Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64216.t1 | XP_003589483.1 | 100 | 142 | 0 | 0 | 1 | 142 | 1 | 142 | 1.60E-72 | 282 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64216.t1 | Q84WL9 | 94.4 | 142 | 8 | 0 | 1 | 142 | 1 | 142 | 2.2e-70 | 266.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64216.t1 | B7FMB2 | 100.0 | 142 | 0 | 0 | 1 | 142 | 1 | 142 | 1.1e-72 | 282.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene75781 | MS.gene64216 | PPI |
| MS.gene91504 | MS.gene64216 | PPI |
| MS.gene061903 | MS.gene64216 | PPI |
| MS.gene049041 | MS.gene64216 | PPI |
| MS.gene35343 | MS.gene64216 | PPI |
| MS.gene073113 | MS.gene64216 | PPI |
| MS.gene021005 | MS.gene64216 | PPI |
| MS.gene64514 | MS.gene64216 | PPI |
| MS.gene06157 | MS.gene64216 | PPI |
| MS.gene20143 | MS.gene64216 | PPI |
| MS.gene94633 | MS.gene64216 | PPI |
| MS.gene09847 | MS.gene64216 | PPI |
| MS.gene017498 | MS.gene64216 | PPI |
| MS.gene64216 | MS.gene015847 | PPI |
| MS.gene64216 | MS.gene06156 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64216.t1 | MTR_1g025190 | 100.000 | 142 | 0 | 0 | 1 | 142 | 1 | 142 | 9.54e-102 | 287 |
| MS.gene64216.t1 | MTR_5g098940 | 55.319 | 141 | 63 | 0 | 1 | 141 | 1 | 141 | 2.44e-54 | 168 |
| MS.gene64216.t1 | MTR_5g087820 | 51.773 | 141 | 68 | 0 | 1 | 141 | 25 | 165 | 4.33e-49 | 155 |
| MS.gene64216.t1 | MTR_7g100010 | 46.763 | 139 | 74 | 0 | 2 | 140 | 3 | 141 | 2.02e-38 | 127 |
| MS.gene64216.t1 | MTR_8g102180 | 46.763 | 139 | 74 | 0 | 2 | 140 | 3 | 141 | 2.02e-38 | 127 |
| MS.gene64216.t1 | MTR_8g077600 | 39.597 | 149 | 81 | 3 | 1 | 142 | 1 | 147 | 4.53e-30 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64216.t1 | AT1G47830 | 94.366 | 142 | 8 | 0 | 1 | 142 | 1 | 142 | 2.71e-96 | 273 |
| MS.gene64216.t1 | AT4G35410 | 54.610 | 141 | 64 | 0 | 1 | 141 | 1 | 141 | 1.39e-53 | 166 |
| MS.gene64216.t1 | AT2G17380 | 53.901 | 141 | 65 | 0 | 1 | 141 | 1 | 141 | 1.66e-53 | 166 |
| MS.gene64216.t1 | AT2G19790 | 46.763 | 139 | 74 | 0 | 2 | 140 | 3 | 141 | 1.16e-38 | 128 |
| MS.gene64216.t1 | AT4G35410 | 53.061 | 98 | 46 | 0 | 1 | 98 | 1 | 98 | 4.34e-33 | 112 |
| MS.gene64216.t1 | AT3G50860 | 38.776 | 147 | 85 | 1 | 1 | 142 | 1 | 147 | 9.89e-33 | 114 |
| MS.gene64216.t1 | AT3G50860 | 37.931 | 145 | 85 | 1 | 1 | 140 | 1 | 145 | 1.45e-31 | 110 |
Find 29 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAACAAAATTAGTGTATT+TGG | 0.060687 | 1.3:+1158309 | None:intergenic |
| CCATTTGTTTGTTGAAATCT+TGG | 0.225064 | 1.3:-1157348 | MS.gene64216:CDS |
| TTCAAGAGGAACATAGTATT+TGG | 0.241775 | 1.3:+1158390 | None:intergenic |
| CAATGTCTGCGAACTTGATT+TGG | 0.278261 | 1.3:-1157312 | MS.gene64216:CDS |
| TCAACAAAATTAGTGTATTT+GGG | 0.345238 | 1.3:+1158310 | None:intergenic |
| GAATGAATTCATCAAGTATA+AGG | 0.361705 | 1.3:+1156116 | None:intergenic |
| GTATTCGACCTTGTGTTTCT+CGG | 0.367660 | 1.3:+1158363 | None:intergenic |
| AACATAGTATTTGGCTAAAC+GGG | 0.399817 | 1.3:+1158399 | None:intergenic |
| CAGGCTATCATTGAAAGAAT+GGG | 0.419258 | 1.3:-1155838 | MS.gene64216:CDS |
| GAACATAGTATTTGGCTAAA+CGG | 0.419670 | 1.3:+1158398 | None:intergenic |
| GCAGGCTATCATTGAAAGAA+TGG | 0.433845 | 1.3:-1155839 | MS.gene64216:intron |
| CCAAGATTTCAACAAACAAA+TGG | 0.450421 | 1.3:+1157348 | None:intergenic |
| GTAATATACCGGAGATATGC+TGG | 0.461155 | 1.3:-1157431 | MS.gene64216:CDS |
| CATTCTGTTGCAGAACAGAC+AGG | 0.470525 | 1.3:-1158428 | MS.gene64216:CDS |
| CTTGATGAATTCATTCTAGC+GGG | 0.516282 | 1.3:-1156109 | MS.gene64216:CDS |
| TGTTCTGCAACAGAATGAAT+CGG | 0.534099 | 1.3:+1158434 | None:intergenic |
| AAAACAGTCCAGCATATCTC+CGG | 0.546650 | 1.3:+1157423 | None:intergenic |
| TGTTTCTCGGAATCTTCAAG+AGG | 0.587461 | 1.3:+1158376 | None:intergenic |
| ACTTGATGAATTCATTCTAG+CGG | 0.603094 | 1.3:-1156110 | MS.gene64216:CDS |
| GTACACACAAGGTAATATAC+CGG | 0.616996 | 1.3:-1157442 | MS.gene64216:CDS |
| GAAACACAAGGTCGAATACG+AGG | 0.625603 | 1.3:-1158359 | MS.gene64216:CDS |
| ACTGCAAGAAACAAGCAAGA+AGG | 0.630829 | 1.3:-1156083 | MS.gene64216:intron |
| TGGGATCTCTATTTACGACA+AGG | 0.631018 | 1.3:+1158329 | None:intergenic |
| GTTGCAGTTTCGTACACACA+AGG | 0.632236 | 1.3:-1157453 | MS.gene64216:intron |
| AGGCTATCATTGAAAGAATG+GGG | 0.635618 | 1.3:-1155837 | MS.gene64216:CDS |
| ATTCTGTTGCAGAACAGACA+GGG | 0.638809 | 1.3:-1158427 | MS.gene64216:CDS |
| TGACATCACTGATAATGAGT+TGG | 0.649266 | 1.3:-1157387 | MS.gene64216:CDS |
| TGAAGATTCCGAGAAACACA+AGG | 0.650445 | 1.3:-1158371 | MS.gene64216:CDS |
| GGCTATCATTGAAAGAATGG+GGG | 0.667109 | 1.3:-1155836 | MS.gene64216:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAAATATGCATTATTTA+TGG | + | chr1.3:1156080-1156099 | None:intergenic | 15.0% |
| !! | TTAAATAATAACCGTTTAAT+GGG | - | chr1.3:1156863-1156882 | MS.gene64216:intron | 15.0% |
| !! | TTTATGATACAAAATAATAG+TGG | - | chr1.3:1157290-1157309 | MS.gene64216:intron | 15.0% |
| !!! | AAATAATAGTGGAATATAAA+AGG | - | chr1.3:1157301-1157320 | MS.gene64216:CDS | 15.0% |
| !!! | AATAATAGTGGAATATAAAA+GGG | - | chr1.3:1157302-1157321 | MS.gene64216:CDS | 15.0% |
| !! | AAGTTATTCTATGCATTATT+AGG | - | chr1.3:1157810-1157829 | MS.gene64216:intron | 20.0% |
| !! | GTTAAATAATAACCGTTTAA+TGG | - | chr1.3:1156862-1156881 | MS.gene64216:intron | 20.0% |
| !! | TCAACAAAATTAGTGTATTT+GGG | + | chr1.3:1156040-1156059 | None:intergenic | 20.0% |
| !!! | AAGGACATTTTTCATATATA+TGG | + | chr1.3:1157727-1157746 | None:intergenic | 20.0% |
| !!! | ATAAATTAATTTCCCCTTTT+TGG | - | chr1.3:1155861-1155880 | MS.gene64216:intron | 20.0% |
| !!! | TTTAGTTTTATCTGATTTGA+AGG | - | chr1.3:1158204-1158223 | MS.gene64216:intron | 20.0% |
| !!! | TTTTTTAGAACTAAAACATG+TGG | + | chr1.3:1157528-1157547 | None:intergenic | 20.0% |
| ! | AAAAATTTGTACACACAACA+AGG | + | chr1.3:1157782-1157801 | None:intergenic | 25.0% |
| ! | AACAAATGTTACCCATTAAA+CGG | + | chr1.3:1156877-1156896 | None:intergenic | 25.0% |
| ! | ATTTATAGAAAACGATGTCT+CGG | - | chr1.3:1157248-1157267 | MS.gene64216:intron | 25.0% |
| ! | CATGATTACTGAAAAACAAA+AGG | + | chr1.3:1157100-1157119 | None:intergenic | 25.0% |
| ! | CTCAACAAAATTAGTGTATT+TGG | + | chr1.3:1156041-1156060 | None:intergenic | 25.0% |
| ! | GAATGAATTCATCAAGTATA+AGG | + | chr1.3:1158234-1158253 | None:intergenic | 25.0% |
| ! | GCAATTGCAAATTATTTACT+AGG | + | chr1.3:1157692-1157711 | None:intergenic | 25.0% |
| ! | GTATGTTAAATTAGACACAA+TGG | + | chr1.3:1158013-1158032 | None:intergenic | 25.0% |
| ! | GTTATCTATCTTTGTATTGT+TGG | - | chr1.3:1157176-1157195 | MS.gene64216:intron | 25.0% |
| ! | TAATGAGTTCGATACAAATA+TGG | - | chr1.3:1156130-1156149 | MS.gene64216:intron | 25.0% |
| ! | TGCTTAGATATTCAAAACAT+TGG | - | chr1.3:1157141-1157160 | MS.gene64216:intron | 25.0% |
| ! | TTTAGATCAAAGTGGAAAAT+GGG | + | chr1.3:1157564-1157583 | None:intergenic | 25.0% |
| !! | AGATTTTCAACCAATTAACT+AGG | + | chr1.3:1156574-1156593 | None:intergenic | 25.0% |
| !! | CAAATACACTAATTTTGTTG+AGG | - | chr1.3:1156039-1156058 | MS.gene64216:intron | 25.0% |
| !!! | TCACTTCTTTCATTTGTTTT+TGG | - | chr1.3:1157931-1157950 | MS.gene64216:intron | 25.0% |
| !!! | TGTTTTTCAGTAATCATGTA+GGG | - | chr1.3:1157102-1157121 | MS.gene64216:intron | 25.0% |
| !!! | TTGTTTTTCAGTAATCATGT+AGG | - | chr1.3:1157101-1157120 | MS.gene64216:intron | 25.0% |
| AAATTACTGTTCACAGATGA+TGG | + | chr1.3:1156735-1156754 | None:intergenic | 30.0% | |
| AAATTAGTCCCTAACTTTGT+AGG | + | chr1.3:1156306-1156325 | None:intergenic | 30.0% | |
| AACATAGTATTTGGCTAAAC+GGG | + | chr1.3:1155951-1155970 | None:intergenic | 30.0% | |
| AATATAAAAGGGTAGATGGA+TGG | - | chr1.3:1157313-1157332 | MS.gene64216:CDS | 30.0% | |
| AATTACTGTTCACAGATGAT+GGG | + | chr1.3:1156734-1156753 | None:intergenic | 30.0% | |
| AATTAGTCCCTAACTTTGTA+GGG | + | chr1.3:1156305-1156324 | None:intergenic | 30.0% | |
| ACAATTTATCCCACTAAATG+GGG | + | chr1.3:1156203-1156222 | None:intergenic | 30.0% | |
| ACTTGATGAATTCATTCTAG+CGG | - | chr1.3:1158237-1158256 | MS.gene64216:intron | 30.0% | |
| ATATAAAAGGGTAGATGGAT+GGG | - | chr1.3:1157314-1157333 | MS.gene64216:CDS | 30.0% | |
| CAGATAAAACTAAATGAGCA+AGG | + | chr1.3:1158198-1158217 | None:intergenic | 30.0% | |
| CATAGGTACCTTATGATTTA+AGG | - | chr1.3:1158349-1158368 | MS.gene64216:CDS | 30.0% | |
| CCAAGATTTCAACAAACAAA+TGG | + | chr1.3:1157002-1157021 | None:intergenic | 30.0% | |
| CTTTAGATCAAAGTGGAAAA+TGG | + | chr1.3:1157565-1157584 | None:intergenic | 30.0% | |
| GAACATAGTATTTGGCTAAA+CGG | + | chr1.3:1155952-1155971 | None:intergenic | 30.0% | |
| GAAGTTGGATCTAGTATTTA+CGG | + | chr1.3:1157659-1157678 | None:intergenic | 30.0% | |
| GACAATTTATCCCACTAAAT+GGG | + | chr1.3:1156204-1156223 | None:intergenic | 30.0% | |
| GCAAAAGTTGAAATACATGA+TGG | - | chr1.3:1157406-1157425 | MS.gene64216:CDS | 30.0% | |
| GGTAATGCTATGATGATATT+GGG | - | chr1.3:1157197-1157216 | MS.gene64216:intron | 30.0% | |
| GTGTCTAATTTAACATACAG+CGG | - | chr1.3:1158015-1158034 | MS.gene64216:intron | 30.0% | |
| TACAAAGTTAGGGACTAATT+TGG | - | chr1.3:1156305-1156324 | MS.gene64216:intron | 30.0% | |
| TATATGAAAAATGTCCTTGC+AGG | - | chr1.3:1157729-1157748 | MS.gene64216:intron | 30.0% | |
| TGACAAAATAACAAACCTTG+TGG | + | chr1.3:1157071-1157090 | None:intergenic | 30.0% | |
| TGTGAACAGTAATTTATCTG+TGG | - | chr1.3:1156740-1156759 | MS.gene64216:intron | 30.0% | |
| TTAGATCAAAGTGGAAAATG+GGG | + | chr1.3:1157563-1157582 | None:intergenic | 30.0% | |
| TTCAAGAGGAACATAGTATT+TGG | + | chr1.3:1155960-1155979 | None:intergenic | 30.0% | |
| TTCATATATATGGCAGCAAA+TGG | + | chr1.3:1157717-1157736 | None:intergenic | 30.0% | |
| TTGAAGGATTCCAAGTTAAT+TGG | - | chr1.3:1156395-1156414 | MS.gene64216:intron | 30.0% | |
| ! | AACACAAAACAGGTTAGTTA+AGG | + | chr1.3:1158487-1158506 | None:intergenic | 30.0% |
| ! | ACACTAATTTTGTTGAGGTA+TGG | - | chr1.3:1156044-1156063 | MS.gene64216:intron | 30.0% |
| ! | CAGAATTAAATTTTCCTGCA+AGG | + | chr1.3:1157746-1157765 | None:intergenic | 30.0% |
| ! | CCATTTGTTTGTTGAAATCT+TGG | - | chr1.3:1156999-1157018 | MS.gene64216:intron | 30.0% |
| ! | GAAGCTGTAGTTCTATATAT+TGG | - | chr1.3:1156820-1156839 | MS.gene64216:intron | 30.0% |
| ! | TGGTAATGCTATGATGATAT+TGG | - | chr1.3:1157196-1157215 | MS.gene64216:intron | 30.0% |
| ! | TTAATTTCCCCTTTTTGGAT+TGG | - | chr1.3:1155866-1155885 | MS.gene64216:intron | 30.0% |
| !! | GTTTTTCAGTAATCATGTAG+GGG | - | chr1.3:1157103-1157122 | MS.gene64216:intron | 30.0% |
| !!! | GAAGAATCTGAGTGTTTTTT+AGG | - | chr1.3:1157354-1157373 | MS.gene64216:CDS | 30.0% |
| !!! | TTTGGTTTTTAACTTCCACA+AGG | - | chr1.3:1157053-1157072 | MS.gene64216:intron | 30.0% |
| AAACACGATCCAATCCAAAA+AGG | + | chr1.3:1155878-1155897 | None:intergenic | 35.0% | |
| AAAGTTAGGGACTAATTTGG+TGG | - | chr1.3:1156308-1156327 | MS.gene64216:intron | 35.0% | |
| AACACGATCCAATCCAAAAA+GGG | + | chr1.3:1155877-1155896 | None:intergenic | 35.0% | |
| AAGTGAGAATAAGGTTGCTT+TGG | + | chr1.3:1157876-1157895 | None:intergenic | 35.0% | |
| AATGAAGTTTGTGATTGCTG+AGG | - | chr1.3:1158094-1158113 | MS.gene64216:intron | 35.0% | |
| ACGTGAAAATGACTGTTTGA+AGG | - | chr1.3:1156379-1156398 | MS.gene64216:intron | 35.0% | |
| AGGATTCCAAGTTAATTGGT+TGG | - | chr1.3:1156399-1156418 | MS.gene64216:intron | 35.0% | |
| AGGCTATCATTGAAAGAATG+GGG | - | chr1.3:1158510-1158529 | MS.gene64216:intron | 35.0% | |
| AGGTCTAAGAAGGCAAAAAA+AGG | + | chr1.3:1156478-1156497 | None:intergenic | 35.0% | |
| ATAAAGGACATTCAAGGTCT+TGG | + | chr1.3:1156520-1156539 | None:intergenic | 35.0% | |
| ATGAAGTTTGTGATTGCTGA+GGG | - | chr1.3:1158095-1158114 | MS.gene64216:intron | 35.0% | |
| ATTTCATCCCAAAAGCTTCA+CGG | + | chr1.3:1156599-1156618 | None:intergenic | 35.0% | |
| CAATTAACTAGGACCTTTCA+AGG | + | chr1.3:1156563-1156582 | None:intergenic | 35.0% | |
| CAGCAATCACAAACTTCATT+TGG | + | chr1.3:1158094-1158113 | None:intergenic | 35.0% | |
| CAGGCTATCATTGAAAGAAT+GGG | - | chr1.3:1158509-1158528 | MS.gene64216:intron | 35.0% | |
| CAGTTAGGCCTTAAATCATA+AGG | + | chr1.3:1158360-1158379 | None:intergenic | 35.0% | |
| CGACAATTTATCCCACTAAA+TGG | + | chr1.3:1156205-1156224 | None:intergenic | 35.0% | |
| CTCGGAAATCGAGATAAATT+AGG | - | chr1.3:1157266-1157285 | MS.gene64216:intron | 35.0% | |
| CTTGAAAGGTCCTAGTTAAT+TGG | - | chr1.3:1156561-1156580 | MS.gene64216:intron | 35.0% | |
| CTTGATGAATTCATTCTAGC+GGG | - | chr1.3:1158238-1158257 | MS.gene64216:intron | 35.0% | |
| GGTGTCAGAATTAGAATTAG+CGG | - | chr1.3:1157444-1157463 | MS.gene64216:CDS | 35.0% | |
| GTACACACAAGGTAATATAC+CGG | - | chr1.3:1156905-1156924 | MS.gene64216:intron | 35.0% | |
| GTGGAATATAAAAGGGTAGA+TGG | - | chr1.3:1157309-1157328 | MS.gene64216:CDS | 35.0% | |
| GTGTCAGAATTAGAATTAGC+GGG | - | chr1.3:1157445-1157464 | MS.gene64216:CDS | 35.0% | |
| TAGACTCACTATTCAACTGT+AGG | - | chr1.3:1157493-1157512 | MS.gene64216:intron | 35.0% | |
| TCGATTTCCTTTGCTTCTTT+GGG | - | chr1.3:1158380-1158399 | MS.gene64216:CDS | 35.0% | |
| TGATGGGAAAATCAAACATG+AGG | + | chr1.3:1156718-1156737 | None:intergenic | 35.0% | |
| TGCTCAATTAGAAACTCAAC+AGG | + | chr1.3:1157971-1157990 | None:intergenic | 35.0% | |
| TGTCAGAATTAGAATTAGCG+GGG | - | chr1.3:1157446-1157465 | MS.gene64216:CDS | 35.0% | |
| TGTTCTCCAACCAATTAACT+TGG | + | chr1.3:1156408-1156427 | None:intergenic | 35.0% | |
| TGTTCTGCAACAGAATGAAT+CGG | + | chr1.3:1155916-1155935 | None:intergenic | 35.0% | |
| TTAGACCTTACTGTTGTCAT+TGG | - | chr1.3:1156490-1156509 | MS.gene64216:intron | 35.0% | |
| ! | AAATCTATCCGTGAAGCTTT+TGG | - | chr1.3:1156588-1156607 | MS.gene64216:intron | 35.0% |
| ! | AATCTATCCGTGAAGCTTTT+GGG | - | chr1.3:1156589-1156608 | MS.gene64216:intron | 35.0% |
| ! | ACAGGTTAGTTAAGGAATTG+TGG | + | chr1.3:1158479-1158498 | None:intergenic | 35.0% |
| ! | GACATGTGATTGCTAGTTTA+AGG | - | chr1.3:1158317-1158336 | MS.gene64216:CDS | 35.0% |
| ! | TGACATCACTGATAATGAGT+TGG | - | chr1.3:1156960-1156979 | MS.gene64216:intron | 35.0% |
| !! | AAGGTTGCTTTGGATCTTTT+GGG | + | chr1.3:1157866-1157885 | None:intergenic | 35.0% |
| !! | AGTCATTTTCACGTGTGATA+TGG | + | chr1.3:1156373-1156392 | None:intergenic | 35.0% |
| !! | GTCATTTTCACGTGTGATAT+GGG | + | chr1.3:1156372-1156391 | None:intergenic | 35.0% |
| !! | TAAGGTTGCTTTGGATCTTT+TGG | + | chr1.3:1157867-1157886 | None:intergenic | 35.0% |
| !!! | AGCATTCTGCTGTTTTAAAG+TGG | - | chr1.3:1156795-1156814 | MS.gene64216:intron | 35.0% |
| AAAACAGTCCAGCATATCTC+CGG | + | chr1.3:1156927-1156946 | None:intergenic | 40.0% | |
| AAATGTGCCCAAAGAAGCAA+AGG | + | chr1.3:1158390-1158409 | None:intergenic | 40.0% | |
| ACACGATCCAATCCAAAAAG+GGG | + | chr1.3:1155876-1155895 | None:intergenic | 40.0% | |
| ACATGAGGAAGCAAAAGAGA+TGG | + | chr1.3:1156703-1156722 | None:intergenic | 40.0% | |
| ACTGCAAGAAACAAGCAAGA+AGG | - | chr1.3:1158264-1158283 | MS.gene64216:intron | 40.0% | |
| AGCAAAGGAAATCGACAGTT+AGG | + | chr1.3:1158375-1158394 | None:intergenic | 40.0% | |
| ATAGCCTGCAAACACAAAAC+AGG | + | chr1.3:1158497-1158516 | None:intergenic | 40.0% | |
| ATTCTGTTGCAGAACAGACA+GGG | - | chr1.3:1155920-1155939 | MS.gene64216:intron | 40.0% | |
| CAATGTCTGCGAACTTGATT+TGG | - | chr1.3:1157035-1157054 | MS.gene64216:intron | 40.0% | |
| CAGCTACATGGATCAATCAA+AGG | + | chr1.3:1156179-1156198 | None:intergenic | 40.0% | |
| CATGAGGAAGCAAAAGAGAT+GGG | + | chr1.3:1156702-1156721 | None:intergenic | 40.0% | |
| CGTAGTGAACAGTAAGACTT+AGG | + | chr1.3:1158056-1158075 | None:intergenic | 40.0% | |
| CTAGGTCTTCTACAAGAAGT+TGG | + | chr1.3:1157674-1157693 | None:intergenic | 40.0% | |
| GACAACAGTAAGGTCTAAGA+AGG | + | chr1.3:1156488-1156507 | None:intergenic | 40.0% | |
| GATCTCCAATGACAACAGTA+AGG | + | chr1.3:1156498-1156517 | None:intergenic | 40.0% | |
| GATGCACGGTTACTAAACAA+CGG | + | chr1.3:1156669-1156688 | None:intergenic | 40.0% | |
| GCAGGCTATCATTGAAAGAA+TGG | - | chr1.3:1158508-1158527 | MS.gene64216:intron | 40.0% | |
| GGCTATCATTGAAAGAATGG+GGG | - | chr1.3:1158511-1158530 | MS.gene64216:intron | 40.0% | |
| GTAATATACCGGAGATATGC+TGG | - | chr1.3:1156916-1156935 | MS.gene64216:intron | 40.0% | |
| GTATTCGACCTTGTGTTTCT+CGG | + | chr1.3:1155987-1156006 | None:intergenic | 40.0% | |
| TCTGTTCTCTAACTCCTAGA+AGG | + | chr1.3:1156238-1156257 | None:intergenic | 40.0% | |
| TGAAGATTCCGAGAAACACA+AGG | - | chr1.3:1155976-1155995 | MS.gene64216:intron | 40.0% | |
| TGGGAGAAAAAACTGATGCA+CGG | + | chr1.3:1156683-1156702 | None:intergenic | 40.0% | |
| TGGGATCTCTATTTACGACA+AGG | + | chr1.3:1156021-1156040 | None:intergenic | 40.0% | |
| TGTTTCTCGGAATCTTCAAG+AGG | + | chr1.3:1155974-1155993 | None:intergenic | 40.0% | |
| TTCTCTGCTTACGACAATTG+CGG | - | chr1.3:1158408-1158427 | MS.gene64216:CDS | 40.0% | |
| ! | AGAGCTAAATCACGTTTTGC+TGG | - | chr1.3:1156434-1156453 | MS.gene64216:intron | 40.0% |
| ! | CTAACCTGTTTTGTGTTTGC+AGG | - | chr1.3:1158490-1158509 | MS.gene64216:intron | 40.0% |
| ! | GGAAGCATAAAGGACATTCA+AGG | + | chr1.3:1156526-1156545 | None:intergenic | 40.0% |
| ! | GTCGATTTCCTTTGCTTCTT+TGG | - | chr1.3:1158379-1158398 | MS.gene64216:CDS | 40.0% |
| !! | AGGTTGCTTTGGATCTTTTG+GGG | + | chr1.3:1157865-1157884 | None:intergenic | 40.0% |
| !! | ATACTCTAGCTCTCTGTTAC+TGG | + | chr1.3:1157903-1157922 | None:intergenic | 40.0% |
| !! | GATGCTGCTTTAGATCAAAG+TGG | + | chr1.3:1157572-1157591 | None:intergenic | 40.0% |
| ACTAAATGGGGTCAGCTACA+TGG | + | chr1.3:1156191-1156210 | None:intergenic | 45.0% | |
| ACTGGAGCGAAGTGAGAATA+AGG | + | chr1.3:1157885-1157904 | None:intergenic | 45.0% | |
| AGGACCTTTCAAGGAAAACG+CGG | + | chr1.3:1156554-1156573 | None:intergenic | 45.0% | |
| AGTTTGTGATTGCTGAGGGT+TGG | - | chr1.3:1158099-1158118 | MS.gene64216:intron | 45.0% | |
| ATGTAGCTGACCCCATTTAG+TGG | - | chr1.3:1156190-1156209 | MS.gene64216:intron | 45.0% | |
| CAAAGTGGAAAATGGGGCAA+AGG | + | chr1.3:1157557-1157576 | None:intergenic | 45.0% | |
| CATTCTGTTGCAGAACAGAC+AGG | - | chr1.3:1155919-1155938 | MS.gene64216:intron | 45.0% | |
| GAAACACAAGGTCGAATACG+AGG | - | chr1.3:1155988-1156007 | MS.gene64216:intron | 45.0% | |
| GTCGTTGTTGTAGTCCTTCT+AGG | - | chr1.3:1156221-1156240 | MS.gene64216:intron | 45.0% | |
| GTTGCAGTTTCGTACACACA+AGG | - | chr1.3:1156894-1156913 | MS.gene64216:intron | 45.0% | |
| GTTTGTGATTGCTGAGGGTT+GGG | - | chr1.3:1158100-1158119 | MS.gene64216:intron | 45.0% | |
| TAAAAGGGTAGATGGATGGG+TGG | - | chr1.3:1157317-1157336 | MS.gene64216:CDS | 45.0% | |
| TGATGGCACAAAAAGAGCTG+AGG | - | chr1.3:1157423-1157442 | MS.gene64216:CDS | 45.0% | |
| TGTAGCTGACCCCATTTAGT+GGG | - | chr1.3:1156191-1156210 | MS.gene64216:intron | 45.0% | |
| ! | GTTTAAGGCTTGAGCTGCAT+AGG | - | chr1.3:1158332-1158351 | MS.gene64216:CDS | 45.0% |
| !! | GAGAGTGCCCTACAAAGTTA+GGG | - | chr1.3:1156295-1156314 | MS.gene64216:intron | 45.0% |
| !! | TGAGAGTGCCCTACAAAGTT+AGG | - | chr1.3:1156294-1156313 | MS.gene64216:intron | 45.0% |
| !! | TGATTTAATATATTATAAAT+TGG | - | chr1.3:1157470-1157489 | MS.gene64216:intron | 5.0% |
| ACCTTTCAAGGAAAACGCGG+AGG | + | chr1.3:1156551-1156570 | None:intergenic | 50.0% | |
| CATCAGAAGATGGTCGGATG+TGG | - | chr1.3:1157384-1157403 | MS.gene64216:CDS | 50.0% | |
| CATCCGACCATCTTCTGATG+TGG | + | chr1.3:1157384-1157403 | None:intergenic | 50.0% | |
| CCTTTCAAGGAAAACGCGGA+GGG | + | chr1.3:1156550-1156569 | None:intergenic | 50.0% | |
| GGTAGATGGATGGGTGGATA+TGG | - | chr1.3:1157323-1157342 | MS.gene64216:CDS | 50.0% | |
| GTGCCACATCAGAAGATGGT+CGG | - | chr1.3:1157378-1157397 | MS.gene64216:CDS | 50.0% | |
| !! | AGGAGTGCCACATCAGAAGA+TGG | - | chr1.3:1157374-1157393 | MS.gene64216:CDS | 50.0% |
| GTGATTGCTGAGGGTTGGGT+TGG | - | chr1.3:1158104-1158123 | MS.gene64216:intron | 55.0% | |
| TTCAAGGAAAACGCGGAGGG+AGG | + | chr1.3:1156547-1156566 | None:intergenic | 55.0% | |
| ! | CCCTCCGCGTTTTCCTTGAA+AGG | - | chr1.3:1156547-1156566 | MS.gene64216:intron | 55.0% |
| ! | CGCGGAGGGAGGAAGCATAA+AGG | + | chr1.3:1156536-1156555 | None:intergenic | 60.0% |
| !! | TGCTGAGGGTTGGGTTGGAG+TGG | - | chr1.3:1158109-1158128 | MS.gene64216:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 1155816 | 1158553 | 1155816 | ID=MS.gene64216 |
| chr1.3 | mRNA | 1155816 | 1158553 | 1155816 | ID=MS.gene64216.t1;Parent=MS.gene64216 |
| chr1.3 | exon | 1158551 | 1158553 | 1158551 | ID=MS.gene64216.t1.exon1;Parent=MS.gene64216.t1 |
| chr1.3 | CDS | 1158551 | 1158553 | 1158551 | ID=cds.MS.gene64216.t1;Parent=MS.gene64216.t1 |
| chr1.3 | exon | 1158309 | 1158458 | 1158309 | ID=MS.gene64216.t1.exon2;Parent=MS.gene64216.t1 |
| chr1.3 | CDS | 1158309 | 1158458 | 1158309 | ID=cds.MS.gene64216.t1;Parent=MS.gene64216.t1 |
| chr1.3 | exon | 1157295 | 1157468 | 1157295 | ID=MS.gene64216.t1.exon3;Parent=MS.gene64216.t1 |
| chr1.3 | CDS | 1157295 | 1157468 | 1157295 | ID=cds.MS.gene64216.t1;Parent=MS.gene64216.t1 |
| chr1.3 | exon | 1156084 | 1156143 | 1156084 | ID=MS.gene64216.t1.exon4;Parent=MS.gene64216.t1 |
| chr1.3 | CDS | 1156084 | 1156143 | 1156084 | ID=cds.MS.gene64216.t1;Parent=MS.gene64216.t1 |
| chr1.3 | exon | 1155816 | 1155857 | 1155816 | ID=MS.gene64216.t1.exon5;Parent=MS.gene64216.t1 |
| chr1.3 | CDS | 1155816 | 1155857 | 1155816 | ID=cds.MS.gene64216.t1;Parent=MS.gene64216.t1 |
| Gene Sequence |
| Protein sequence |
