Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65090.t1 | XP_003622929.1 | 88.9 | 784 | 63 | 1 | 1 | 760 | 1 | 784 | 0.00E+00 | 1219.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65090.t1 | O48847 | 52.4 | 790 | 335 | 13 | 8 | 760 | 2 | 787 | 6.3e-209 | 728.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65090.t1 | G7L191 | 88.9 | 784 | 63 | 1 | 1 | 760 | 1 | 784 | 0.0e+00 | 1219.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene65090.t1 | TR | LUG |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene65090 | 0.83417 | 3.50E-56 | -1.69E-46 |
MS.gene049159 | MS.gene65090 | 0.811894 | 5.57E-51 | -1.69E-46 |
MS.gene050551 | MS.gene65090 | 0.818085 | 2.36E-52 | -1.69E-46 |
MS.gene051198 | MS.gene65090 | 0.805017 | 1.64E-49 | -1.69E-46 |
MS.gene051363 | MS.gene65090 | 0.816874 | 4.42E-52 | -1.69E-46 |
MS.gene051365 | MS.gene65090 | 0.811408 | 7.11E-51 | -1.69E-46 |
MS.gene052519 | MS.gene65090 | 0.801889 | 7.28E-49 | -1.69E-46 |
MS.gene052611 | MS.gene65090 | 0.813148 | 2.96E-51 | -1.69E-46 |
MS.gene052773 | MS.gene65090 | 0.819083 | 1.40E-52 | -1.69E-46 |
MS.gene052863 | MS.gene65090 | 0.809537 | 1.80E-50 | -1.69E-46 |
MS.gene053079 | MS.gene65090 | 0.820898 | 5.38E-53 | -1.69E-46 |
MS.gene053226 | MS.gene65090 | 0.825628 | 4.23E-54 | -1.69E-46 |
MS.gene05458 | MS.gene65090 | 0.814225 | 1.72E-51 | -1.69E-46 |
MS.gene054651 | MS.gene65090 | 0.822987 | 1.77E-53 | -1.69E-46 |
MS.gene054775 | MS.gene65090 | 0.807282 | 5.45E-50 | -1.69E-46 |
MS.gene055465 | MS.gene65090 | 0.805213 | 1.49E-49 | -1.69E-46 |
MS.gene055466 | MS.gene65090 | 0.810785 | 9.70E-51 | -1.69E-46 |
MS.gene055468 | MS.gene65090 | 0.804222 | 2.40E-49 | -1.69E-46 |
MS.gene055513 | MS.gene65090 | 0.820985 | 5.14E-53 | -1.69E-46 |
MS.gene057915 | MS.gene65090 | 0.808797 | 2.60E-50 | -1.69E-46 |
MS.gene058625 | MS.gene65090 | 0.814229 | 1.71E-51 | -1.69E-46 |
MS.gene059570 | MS.gene65090 | 0.806477 | 8.07E-50 | -1.69E-46 |
MS.gene059842 | MS.gene65090 | 0.822503 | 2.29E-53 | -1.69E-46 |
MS.gene060637 | MS.gene65090 | 0.800056 | 1.72E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65090.t1 | MTR_7g058460 | 93.112 | 784 | 30 | 1 | 1 | 760 | 1 | 784 | 0.0 | 1452 |
MS.gene65090.t1 | MTR_7g058440 | 89.668 | 784 | 48 | 2 | 1 | 760 | 1 | 775 | 0.0 | 1387 |
MS.gene65090.t1 | MTR_1g050340 | 61.675 | 788 | 264 | 12 | 8 | 760 | 2 | 786 | 0.0 | 924 |
MS.gene65090.t1 | MTR_1g050340 | 61.597 | 789 | 264 | 12 | 8 | 760 | 2 | 787 | 0.0 | 924 |
MS.gene65090.t1 | MTR_1g011610 | 53.461 | 419 | 172 | 7 | 352 | 760 | 488 | 893 | 7.22e-132 | 413 |
MS.gene65090.t1 | MTR_1g011610 | 40.047 | 427 | 150 | 16 | 8 | 352 | 2 | 404 | 9.21e-55 | 203 |
MS.gene65090.t1 | MTR_3g107910 | 46.154 | 494 | 218 | 10 | 284 | 760 | 435 | 897 | 1.95e-129 | 407 |
MS.gene65090.t1 | MTR_3g107910 | 36.940 | 268 | 114 | 15 | 114 | 352 | 155 | 396 | 4.75e-19 | 92.8 |
MS.gene65090.t1 | MTR_3g107910 | 46.154 | 494 | 218 | 10 | 284 | 760 | 442 | 904 | 2.12e-129 | 407 |
MS.gene65090.t1 | MTR_3g107910 | 35.636 | 275 | 115 | 15 | 114 | 352 | 155 | 403 | 3.94e-17 | 86.7 |
MS.gene65090.t1 | MTR_1g011610 | 51.991 | 427 | 175 | 8 | 352 | 760 | 488 | 902 | 6.44e-129 | 405 |
MS.gene65090.t1 | MTR_1g011610 | 40.047 | 427 | 150 | 16 | 8 | 352 | 2 | 404 | 1.15e-54 | 203 |
MS.gene65090.t1 | MTR_4g113080 | 33.625 | 800 | 421 | 25 | 18 | 760 | 35 | 781 | 2.94e-120 | 380 |
MS.gene65090.t1 | MTR_2g014020 | 44.126 | 349 | 186 | 5 | 418 | 760 | 179 | 524 | 5.67e-96 | 308 |
MS.gene65090.t1 | MTR_2g014020 | 43.162 | 234 | 128 | 3 | 418 | 647 | 179 | 411 | 2.29e-57 | 201 |
MS.gene65090.t1 | MTR_4g088620 | 35.484 | 279 | 177 | 3 | 484 | 760 | 31 | 308 | 1.06e-56 | 196 |
MS.gene65090.t1 | MTR_4g088640 | 38.889 | 288 | 169 | 5 | 476 | 760 | 100 | 383 | 6.19e-55 | 194 |
MS.gene65090.t1 | MTR_4g088625 | 38.267 | 277 | 162 | 6 | 488 | 760 | 28 | 299 | 4.85e-53 | 186 |
MS.gene65090.t1 | MTR_4g088665 | 36.655 | 281 | 170 | 5 | 486 | 760 | 104 | 382 | 3.51e-52 | 186 |
MS.gene65090.t1 | MTR_4g088635 | 36.713 | 286 | 167 | 6 | 486 | 760 | 101 | 383 | 1.60e-50 | 182 |
MS.gene65090.t1 | MTR_4g088660 | 36.232 | 276 | 173 | 3 | 486 | 760 | 208 | 481 | 4.88e-50 | 183 |
MS.gene65090.t1 | MTR_4g088670 | 36.765 | 272 | 154 | 5 | 488 | 754 | 31 | 289 | 1.07e-47 | 171 |
MS.gene65090.t1 | MTR_4g088675 | 32.365 | 241 | 118 | 7 | 524 | 760 | 21 | 220 | 3.93e-32 | 124 |
MS.gene65090.t1 | MTR_1g072140 | 25.733 | 307 | 170 | 9 | 461 | 759 | 12 | 268 | 9.62e-20 | 91.3 |
MS.gene65090.t1 | MTR_5g022690 | 24.272 | 309 | 203 | 9 | 476 | 759 | 173 | 475 | 3.01e-19 | 92.0 |
MS.gene65090.t1 | MTR_3g045130 | 26.990 | 289 | 163 | 7 | 476 | 759 | 265 | 510 | 3.71e-18 | 89.0 |
MS.gene65090.t1 | MTR_4g119620 | 25.000 | 292 | 163 | 8 | 483 | 759 | 27 | 277 | 4.83e-18 | 86.7 |
MS.gene65090.t1 | MTR_4g119620 | 23.868 | 243 | 173 | 6 | 486 | 718 | 81 | 321 | 4.12e-12 | 68.6 |
MS.gene65090.t1 | MTR_4g095058 | 26.378 | 254 | 166 | 9 | 486 | 724 | 292 | 539 | 4.14e-16 | 82.8 |
MS.gene65090.t1 | MTR_4g095058 | 26.378 | 254 | 166 | 9 | 486 | 724 | 290 | 537 | 4.70e-16 | 82.4 |
MS.gene65090.t1 | MTR_8g038550 | 19.408 | 304 | 234 | 8 | 464 | 759 | 164 | 464 | 9.06e-15 | 79.0 |
MS.gene65090.t1 | MTR_1g090827 | 23.529 | 272 | 172 | 7 | 486 | 724 | 54 | 322 | 2.16e-13 | 74.7 |
MS.gene65090.t1 | MTR_4g071130 | 22.794 | 272 | 174 | 8 | 486 | 724 | 54 | 322 | 3.00e-13 | 74.3 |
MS.gene65090.t1 | MTR_6g004040 | 24.537 | 216 | 157 | 4 | 496 | 707 | 30 | 243 | 5.42e-13 | 73.2 |
MS.gene65090.t1 | MTR_8g092620 | 21.631 | 282 | 210 | 7 | 486 | 760 | 21 | 298 | 8.43e-13 | 70.5 |
MS.gene65090.t1 | MTR_1g044720 | 27.273 | 187 | 130 | 4 | 497 | 678 | 236 | 421 | 1.88e-12 | 70.9 |
MS.gene65090.t1 | MTR_2g102277 | 23.923 | 209 | 153 | 3 | 486 | 688 | 60 | 268 | 2.08e-12 | 71.2 |
MS.gene65090.t1 | MTR_2g102277 | 23.923 | 209 | 153 | 3 | 486 | 688 | 60 | 268 | 2.23e-12 | 71.2 |
MS.gene65090.t1 | MTR_4g011950 | 23.923 | 209 | 153 | 3 | 486 | 688 | 60 | 268 | 2.75e-12 | 70.9 |
MS.gene65090.t1 | MTR_5g016350 | 23.320 | 253 | 175 | 8 | 486 | 724 | 233 | 480 | 1.98e-11 | 67.8 |
MS.gene65090.t1 | MTR_5g016350 | 23.789 | 227 | 157 | 8 | 481 | 694 | 269 | 492 | 4.77e-11 | 66.2 |
MS.gene65090.t1 | MTR_5g016350 | 23.320 | 253 | 175 | 8 | 486 | 724 | 297 | 544 | 2.26e-11 | 67.8 |
MS.gene65090.t1 | MTR_5g016350 | 23.789 | 227 | 157 | 8 | 481 | 694 | 333 | 556 | 3.73e-11 | 67.0 |
MS.gene65090.t1 | MTR_1g097140 | 22.909 | 275 | 198 | 7 | 493 | 759 | 91 | 359 | 3.64e-11 | 66.2 |
MS.gene65090.t1 | MTR_3g106080 | 28.324 | 173 | 118 | 4 | 475 | 643 | 452 | 622 | 4.32e-11 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65090.t1 | AT2G32700 | 58.122 | 788 | 291 | 13 | 8 | 760 | 2 | 785 | 0.0 | 887 |
MS.gene65090.t1 | AT2G32700 | 57.975 | 790 | 291 | 14 | 8 | 760 | 2 | 787 | 0.0 | 882 |
MS.gene65090.t1 | AT2G32700 | 57.975 | 790 | 291 | 14 | 8 | 760 | 2 | 787 | 0.0 | 882 |
MS.gene65090.t1 | AT2G32700 | 57.975 | 790 | 291 | 14 | 8 | 760 | 2 | 787 | 0.0 | 882 |
MS.gene65090.t1 | AT2G32700 | 57.975 | 790 | 291 | 14 | 8 | 760 | 2 | 787 | 0.0 | 882 |
MS.gene65090.t1 | AT2G32700 | 57.975 | 790 | 291 | 14 | 8 | 760 | 2 | 787 | 0.0 | 882 |
MS.gene65090.t1 | AT2G32700 | 56.613 | 809 | 291 | 15 | 8 | 760 | 2 | 806 | 0.0 | 870 |
MS.gene65090.t1 | AT4G32551 | 53.089 | 437 | 184 | 7 | 336 | 760 | 504 | 931 | 3.06e-141 | 439 |
MS.gene65090.t1 | AT4G32551 | 75.862 | 87 | 21 | 0 | 8 | 94 | 2 | 88 | 5.52e-38 | 152 |
MS.gene65090.t1 | AT4G32551 | 38.115 | 244 | 106 | 13 | 113 | 330 | 185 | 409 | 2.08e-18 | 90.9 |
MS.gene65090.t1 | AT4G32551 | 53.089 | 437 | 184 | 7 | 336 | 760 | 542 | 969 | 6.84e-141 | 439 |
MS.gene65090.t1 | AT4G32551 | 75.862 | 87 | 21 | 0 | 8 | 94 | 2 | 88 | 6.45e-38 | 152 |
MS.gene65090.t1 | AT4G32551 | 35.793 | 271 | 113 | 15 | 113 | 330 | 185 | 447 | 4.97e-16 | 83.2 |
MS.gene65090.t1 | AT4G02730 | 24.845 | 322 | 178 | 8 | 446 | 759 | 20 | 285 | 2.48e-21 | 96.7 |
MS.gene65090.t1 | AT3G49660 | 27.431 | 288 | 153 | 9 | 486 | 760 | 27 | 271 | 6.98e-20 | 92.0 |
MS.gene65090.t1 | AT2G41500 | 25.623 | 281 | 199 | 7 | 486 | 759 | 258 | 535 | 1.02e-19 | 94.0 |
MS.gene65090.t1 | AT2G41500 | 25.623 | 281 | 199 | 7 | 486 | 759 | 258 | 535 | 1.02e-19 | 94.0 |
MS.gene65090.t1 | AT5G13480 | 22.789 | 294 | 216 | 9 | 474 | 759 | 114 | 404 | 1.19e-17 | 87.8 |
MS.gene65090.t1 | AT5G13480 | 22.789 | 294 | 216 | 9 | 474 | 759 | 102 | 392 | 1.37e-17 | 87.8 |
MS.gene65090.t1 | AT5G13480 | 22.789 | 294 | 216 | 9 | 474 | 759 | 102 | 392 | 1.50e-17 | 87.4 |
MS.gene65090.t1 | AT5G13480 | 22.789 | 294 | 216 | 9 | 474 | 759 | 125 | 415 | 2.26e-17 | 87.0 |
MS.gene65090.t1 | AT5G25150 | 26.923 | 260 | 163 | 7 | 409 | 643 | 364 | 621 | 1.54e-13 | 74.7 |
MS.gene65090.t1 | AT5G25150 | 26.923 | 260 | 163 | 7 | 409 | 643 | 364 | 621 | 1.82e-13 | 74.7 |
MS.gene65090.t1 | AT2G21390 | 22.490 | 249 | 158 | 7 | 486 | 701 | 54 | 300 | 2.08e-13 | 74.7 |
MS.gene65090.t1 | AT1G62020 | 22.426 | 272 | 175 | 7 | 486 | 724 | 54 | 322 | 2.28e-13 | 74.7 |
MS.gene65090.t1 | AT1G52360 | 23.923 | 209 | 153 | 3 | 486 | 688 | 60 | 268 | 9.38e-13 | 72.4 |
MS.gene65090.t1 | AT1G52360 | 23.923 | 209 | 153 | 3 | 486 | 688 | 60 | 268 | 9.38e-13 | 72.4 |
MS.gene65090.t1 | AT1G52360 | 23.923 | 209 | 153 | 3 | 486 | 688 | 60 | 268 | 1.03e-12 | 72.4 |
MS.gene65090.t1 | AT3G15980 | 24.402 | 209 | 152 | 3 | 486 | 688 | 60 | 268 | 1.38e-12 | 72.0 |
MS.gene65090.t1 | AT3G15980 | 24.402 | 209 | 152 | 3 | 486 | 688 | 60 | 268 | 1.38e-12 | 72.0 |
MS.gene65090.t1 | AT3G15980 | 24.402 | 209 | 152 | 3 | 486 | 688 | 60 | 268 | 1.38e-12 | 72.0 |
MS.gene65090.t1 | AT3G15980 | 24.402 | 209 | 152 | 3 | 486 | 688 | 60 | 268 | 1.38e-12 | 72.0 |
MS.gene65090.t1 | AT3G15980 | 24.402 | 209 | 152 | 3 | 486 | 688 | 60 | 268 | 1.41e-12 | 72.0 |
MS.gene65090.t1 | AT3G15980 | 24.402 | 209 | 152 | 3 | 486 | 688 | 60 | 268 | 1.54e-12 | 72.0 |
MS.gene65090.t1 | AT3G15980 | 24.402 | 209 | 152 | 3 | 486 | 688 | 60 | 268 | 1.57e-12 | 71.6 |
MS.gene65090.t1 | AT2G33340 | 26.357 | 258 | 169 | 8 | 497 | 745 | 236 | 481 | 1.75e-12 | 71.2 |
MS.gene65090.t1 | AT2G33340 | 26.357 | 258 | 169 | 8 | 497 | 745 | 236 | 481 | 1.75e-12 | 71.2 |
MS.gene65090.t1 | AT1G52360 | 23.923 | 209 | 153 | 3 | 486 | 688 | 104 | 312 | 1.82e-12 | 71.6 |
MS.gene65090.t1 | AT1G11160 | 21.759 | 216 | 163 | 4 | 496 | 707 | 29 | 242 | 2.66e-12 | 71.2 |
MS.gene65090.t1 | AT5G60940 | 24.783 | 230 | 144 | 10 | 520 | 724 | 118 | 343 | 2.68e-12 | 70.1 |
MS.gene65090.t1 | AT2G33340 | 26.357 | 258 | 169 | 8 | 497 | 745 | 236 | 481 | 2.81e-12 | 70.1 |
MS.gene65090.t1 | AT1G11160 | 21.759 | 216 | 163 | 4 | 496 | 707 | 29 | 242 | 3.10e-12 | 70.9 |
MS.gene65090.t1 | AT1G11160 | 21.759 | 216 | 163 | 4 | 496 | 707 | 29 | 242 | 3.47e-12 | 70.9 |
MS.gene65090.t1 | AT5G60940 | 24.783 | 230 | 144 | 10 | 520 | 724 | 26 | 251 | 4.91e-12 | 68.6 |
MS.gene65090.t1 | AT5G67320 | 24.601 | 313 | 185 | 9 | 486 | 759 | 268 | 568 | 6.21e-12 | 69.7 |
MS.gene65090.t1 | AT1G71840 | 24.113 | 282 | 192 | 8 | 493 | 759 | 81 | 355 | 6.55e-12 | 68.6 |
MS.gene65090.t1 | AT5G23430 | 24.091 | 220 | 153 | 6 | 496 | 707 | 30 | 243 | 7.34e-12 | 69.7 |
MS.gene65090.t1 | AT5G23430 | 24.091 | 220 | 153 | 6 | 496 | 707 | 30 | 243 | 7.34e-12 | 69.7 |
MS.gene65090.t1 | AT5G23430 | 24.091 | 220 | 153 | 6 | 496 | 707 | 30 | 243 | 7.67e-12 | 69.7 |
MS.gene65090.t1 | AT5G08390 | 22.685 | 216 | 161 | 4 | 496 | 707 | 30 | 243 | 9.27e-12 | 69.3 |
MS.gene65090.t1 | AT5G43920 | 22.507 | 351 | 228 | 16 | 434 | 759 | 182 | 513 | 1.06e-11 | 68.6 |
MS.gene65090.t1 | AT5G16750 | 21.277 | 282 | 203 | 5 | 496 | 759 | 372 | 652 | 1.58e-11 | 68.6 |
MS.gene65090.t1 | AT1G79990 | 23.445 | 209 | 154 | 3 | 486 | 688 | 60 | 268 | 3.55e-11 | 67.4 |
MS.gene65090.t1 | AT1G79990 | 23.445 | 209 | 154 | 3 | 486 | 688 | 60 | 268 | 3.89e-11 | 67.4 |
Find 182 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCCATATCTTCACCAAATT+TGG | 0.073622 | 7.1:-43287384 | None:intergenic |
ATGGATCCACGTAGACTTTC+TGG | 0.180048 | 7.1:+43284145 | MS.gene65090:CDS |
TTGAGTGGTGGTCCGTCTTT+TGG | 0.188375 | 7.1:+43281175 | MS.gene65090:CDS |
AATGCAAAACCAATATATTT+TGG | 0.201165 | 7.1:+43284048 | MS.gene65090:CDS |
GGCATCTATTAGTCCAAATT+TGG | 0.206338 | 7.1:+43287371 | MS.gene65090:CDS |
CAGAAAATATCAGTCTTCTT+AGG | 0.218260 | 7.1:-43286645 | None:intergenic |
AGCCTTGGAAATTCTAATTA+TGG | 0.228558 | 7.1:+43284118 | MS.gene65090:CDS |
CAGTTGGTCCATGGTAATTC+AGG | 0.252220 | 7.1:+43282035 | MS.gene65090:CDS |
AGGAAGCAAGCTTCTTCTTC+TGG | 0.267297 | 7.1:+43284924 | MS.gene65090:CDS |
ATAACTAATTTGTGTTCTTC+AGG | 0.271953 | 7.1:-43286338 | None:intergenic |
GAATCCATGGGAAAATTCTT+TGG | 0.279765 | 7.1:-43282257 | None:intergenic |
GTTCTCTGGCCTTCGTCTGC+TGG | 0.286432 | 7.1:-43281636 | None:intergenic |
GTTGCCAACTGAGATGAATT+TGG | 0.300359 | 7.1:-43286380 | None:intergenic |
GTCATCAGAGTAACAGAAAA+AGG | 0.305770 | 7.1:+43284904 | MS.gene65090:intron |
GTCCAAATTTGGTGAAGATA+TGG | 0.313890 | 7.1:+43287382 | MS.gene65090:CDS |
ACATTTCAACTCACAGTTAG+AGG | 0.314147 | 7.1:-43283896 | None:intergenic |
AAATTCTAATTATGGTGATA+TGG | 0.317057 | 7.1:+43284126 | MS.gene65090:CDS |
TGATCAACTAAGACCTGGTT+TGG | 0.320891 | 7.1:+43283997 | MS.gene65090:CDS |
TAGGTGAACCTGATTGCATT+TGG | 0.330287 | 7.1:-43284234 | None:intergenic |
CTATTTGCATCAATAAGATT+TGG | 0.330561 | 7.1:-43281862 | None:intergenic |
CTGCATTTGAAGCTGTTCTC+TGG | 0.336521 | 7.1:-43281650 | None:intergenic |
TCAGGTTGTCCTGTGGAATA+TGG | 0.337781 | 7.1:+43286292 | MS.gene65090:intron |
ATTAGTAGTCGGAGGGATTT+CGG | 0.339596 | 7.1:+43287494 | MS.gene65090:CDS |
TCGATTCTACAATCGAAATC+TGG | 0.345323 | 7.1:+43282296 | MS.gene65090:CDS |
CAGGATGATATAGTTCGATT+TGG | 0.350262 | 7.1:+43285430 | MS.gene65090:intron |
TTCATGGCCAATGCACTTGC+TGG | 0.354921 | 7.1:-43281787 | None:intergenic |
CCATGGATTCGTCAGTTTAT+CGG | 0.359532 | 7.1:+43282270 | MS.gene65090:CDS |
CCACCCAGTCCAGGATGATT+AGG | 0.373675 | 7.1:-43281721 | None:intergenic |
GTCAATATGAAGCCAACTTT+GGG | 0.383304 | 7.1:+43280644 | None:intergenic |
CAACATACCTTCAGAGTTCA+TGG | 0.387665 | 7.1:-43281755 | None:intergenic |
GTGACAAATCTGTGCGGTTA+TGG | 0.388414 | 7.1:+43286411 | MS.gene65090:CDS |
GGAGATGCTGGCAATCTCTA+TGG | 0.392177 | 7.1:+43285505 | MS.gene65090:CDS |
CAAAGGATGGTCAATCTAAC+AGG | 0.400484 | 7.1:+43284191 | MS.gene65090:CDS |
AGCCATGTTCCACAGCTCTA+AGG | 0.401681 | 7.1:-43288102 | None:intergenic |
AGGTGAACCTGATTGCATTT+GGG | 0.402536 | 7.1:-43284233 | None:intergenic |
TTCTCTGGCCTTCGTCTGCT+GGG | 0.402566 | 7.1:-43281635 | None:intergenic |
GCTATATTCTTGAACACAAT+AGG | 0.403277 | 7.1:-43286586 | None:intergenic |
CAAATATTGTTCACCGGCTC+AGG | 0.410939 | 7.1:-43287324 | None:intergenic |
TGTCAATATGAAGCCAACTT+TGG | 0.411714 | 7.1:+43280643 | None:intergenic |
CAGTGCTGGAGAAGACAAAA+AGG | 0.412474 | 7.1:+43285739 | MS.gene65090:CDS |
ATGAACTCTGAAGGTATGTT+GGG | 0.414053 | 7.1:+43281757 | MS.gene65090:CDS |
GTTTCCAGTACCAGTGCTAT+TGG | 0.416797 | 7.1:-43284952 | None:intergenic |
GTTCAGGAGCTCAACTCTAC+TGG | 0.418673 | 7.1:+43287426 | MS.gene65090:CDS |
TTGGCTGAGTGTGCTGCTAC+TGG | 0.422243 | 7.1:+43288173 | MS.gene65090:CDS |
AGAAAATATCAGTCTTCTTA+GGG | 0.424155 | 7.1:-43286644 | None:intergenic |
CTCGTGTACCCGTGTATCTA+AGG | 0.424307 | 7.1:+43286716 | MS.gene65090:CDS |
ATTTCCTCCCAAATGCAATC+AGG | 0.425797 | 7.1:+43284226 | MS.gene65090:CDS |
TGTGTCGATGATGGTGAATT+AGG | 0.429565 | 7.1:-43284990 | None:intergenic |
GCAGAAGCAACTGGAGGACT+TGG | 0.435271 | 7.1:+43285092 | MS.gene65090:CDS |
GACCTCAGGAGAATGCGTTC+AGG | 0.436546 | 7.1:+43287410 | MS.gene65090:CDS |
GTTGTGATGCCAAAATATAT+TGG | 0.439571 | 7.1:-43284057 | None:intergenic |
ACAGGTCTTGGCACAGGCTC+TGG | 0.440258 | 7.1:+43284084 | MS.gene65090:CDS |
GTGATAATGAAAATGAAATT+CGG | 0.440447 | 7.1:+43286673 | MS.gene65090:CDS |
TTTGGCATCACAACAACAAC+AGG | 0.440995 | 7.1:+43284066 | MS.gene65090:CDS |
TCCTGCATCATTTGATAGAA+AGG | 0.441149 | 7.1:-43285485 | None:intergenic |
AGCCGGTGAACAATATTTGT+TGG | 0.446057 | 7.1:+43287328 | MS.gene65090:CDS |
AATGAAACACCCTCATTCAA+TGG | 0.448834 | 7.1:+43281825 | MS.gene65090:CDS |
ACTAATAAAGTTGCATAGCT+TGG | 0.449679 | 7.1:-43287477 | None:intergenic |
TGTCTTTCAGGATTAAATCA+AGG | 0.450668 | 7.1:+43283845 | MS.gene65090:intron |
TCTTCTTAGGGTGGAAATCA+AGG | 0.451351 | 7.1:-43286632 | None:intergenic |
GGAAAGTTGCTTGCCAGTGC+TGG | 0.454974 | 7.1:+43285725 | MS.gene65090:CDS |
GTGAGGTTTCAGCCTGGATC+AGG | 0.455249 | 7.1:+43286828 | MS.gene65090:CDS |
GCCGGTGAACAATATTTGTT+GGG | 0.455398 | 7.1:+43287329 | MS.gene65090:CDS |
CCGATAAACTGACGAATCCA+TGG | 0.456114 | 7.1:-43282270 | None:intergenic |
GTGGAAATCAAGGGACATAA+TGG | 0.456387 | 7.1:-43286622 | None:intergenic |
TGGGTCAAGCTCAAACTACC+TGG | 0.458013 | 7.1:+43280663 | MS.gene65090:CDS |
TGACAAATCTGTGCGGTTAT+GGG | 0.458834 | 7.1:+43286412 | MS.gene65090:CDS |
CTGGAGGATTTCTCTTTGAG+TGG | 0.460742 | 7.1:+43281160 | MS.gene65090:CDS |
GAGATGAATTTGGTCTAAAA+CGG | 0.460751 | 7.1:-43286370 | None:intergenic |
GTTAGAGGCCATCCCTTCAA+TGG | 0.469250 | 7.1:-43283881 | None:intergenic |
GCAAGCAACTGTCCTGATCC+AGG | 0.471944 | 7.1:-43286840 | None:intergenic |
GATCAACTAAGACCTGGTTT+GGG | 0.472897 | 7.1:+43283998 | MS.gene65090:CDS |
ATGTATGGTGCAGAAGCAAC+TGG | 0.477378 | 7.1:+43285083 | MS.gene65090:CDS |
GCTGCCAATAGCACTGGTAC+TGG | 0.478935 | 7.1:+43284948 | MS.gene65090:CDS |
TGCGGTATTGCAGCAAATGC+AGG | 0.483221 | 7.1:+43282067 | MS.gene65090:CDS |
AATATTTGTTGGGATACTAC+TGG | 0.484000 | 7.1:+43287339 | MS.gene65090:CDS |
TAGACCAAATTCATCTCAGT+TGG | 0.486643 | 7.1:+43286376 | MS.gene65090:CDS |
TCAAATGATGCAGGAGATGC+TGG | 0.486665 | 7.1:+43285493 | MS.gene65090:CDS |
CATGAACTCTGAAGGTATGT+TGG | 0.492726 | 7.1:+43281756 | MS.gene65090:CDS |
AGATCCTAATCATCCTGGAC+TGG | 0.494987 | 7.1:+43281717 | MS.gene65090:CDS |
GAAATCACATTCTCATGTGC+AGG | 0.497961 | 7.1:-43288146 | None:intergenic |
GGTCAATCTAACAGGAATGA+TGG | 0.498321 | 7.1:+43284199 | MS.gene65090:CDS |
TGTCTCAGTCAGTTGGTCCA+TGG | 0.501237 | 7.1:+43282026 | MS.gene65090:intron |
TCTTATTGATGCAAATAGAA+TGG | 0.502350 | 7.1:+43281867 | MS.gene65090:CDS |
ATACACTTTATCAGCTTCCC+AGG | 0.504001 | 7.1:-43280681 | None:intergenic |
CGATTCTACAATCGAAATCT+GGG | 0.506221 | 7.1:+43282297 | MS.gene65090:CDS |
GAGGATTTCTCTTTGAGTGG+TGG | 0.509302 | 7.1:+43281163 | MS.gene65090:CDS |
CTGGCACAACAAAACAGCCT+TGG | 0.512766 | 7.1:+43284103 | MS.gene65090:CDS |
AAATCAGCAACAAGTCATCA+AGG | 0.513351 | 7.1:+43281898 | MS.gene65090:CDS |
AAATCTGGGTTAGGCAGTGC+AGG | 0.515833 | 7.1:+43282311 | MS.gene65090:CDS |
TATTCTTGAACACAATAGGT+TGG | 0.516797 | 7.1:-43286582 | None:intergenic |
GGATACTACTGGAGATATGC+TGG | 0.518775 | 7.1:+43287350 | MS.gene65090:CDS |
GCAGCCACCAGCAAGTGCAT+TGG | 0.523196 | 7.1:+43281780 | MS.gene65090:CDS |
CATGGGAAAATTCTTTGGAC+TGG | 0.526682 | 7.1:-43282252 | None:intergenic |
TTCAAAGAACCACCCAGTCC+AGG | 0.526740 | 7.1:-43281730 | None:intergenic |
CACCATAATTAGAATTTCCA+AGG | 0.530895 | 7.1:-43284120 | None:intergenic |
AGTTACAAGTCTTCCATTGA+AGG | 0.531861 | 7.1:+43283868 | MS.gene65090:CDS |
ATCACAACAACAACAGGTCT+TGG | 0.532144 | 7.1:+43284072 | MS.gene65090:CDS |
TCCTTTCTATCAAATGATGC+AGG | 0.532417 | 7.1:+43285484 | MS.gene65090:CDS |
ATGGCCAATGCACTTGCTGG+TGG | 0.533520 | 7.1:-43281784 | None:intergenic |
CAAGTCTTCCATTGAAGGGA+TGG | 0.533713 | 7.1:+43283873 | MS.gene65090:CDS |
TGAGAATGTGATTTCTGCGT+TGG | 0.535664 | 7.1:+43288154 | MS.gene65090:CDS |
GTTTGAGCTTGACCCAAAGT+TGG | 0.537305 | 7.1:-43280656 | None:intergenic |
CGAAGAGATCCTAATCATCC+TGG | 0.545254 | 7.1:+43281712 | MS.gene65090:CDS |
GATCCTAATCATCCTGGACT+GGG | 0.546709 | 7.1:+43281718 | MS.gene65090:CDS |
ACATCTGAATCCATTGAATG+AGG | 0.547319 | 7.1:-43281835 | None:intergenic |
GTCCTTAGAGCTGTGGAACA+TGG | 0.548837 | 7.1:+43288100 | MS.gene65090:intron |
AACATACCTTCAGAGTTCAT+GGG | 0.549284 | 7.1:-43281754 | None:intergenic |
CAACTTTATTAGTAGTCGGA+GGG | 0.550250 | 7.1:+43287487 | MS.gene65090:CDS |
CAAAAGAGCATGATGATGTA+TGG | 0.551022 | 7.1:+43285068 | MS.gene65090:CDS |
TTCAGGAGCTCAACTCTACT+GGG | 0.552222 | 7.1:+43287427 | MS.gene65090:CDS |
TATGCAACTTTATTAGTAGT+CGG | 0.552448 | 7.1:+43287483 | MS.gene65090:CDS |
TCTGGAGCTGCCAATAGCAC+TGG | 0.557212 | 7.1:+43284942 | MS.gene65090:CDS |
TGAGTGTGCTGCTACTGGAA+TGG | 0.557700 | 7.1:+43288178 | MS.gene65090:CDS |
AAGATATGGAATTTGACCTC+AGG | 0.557728 | 7.1:+43287396 | MS.gene65090:CDS |
CTTTACAGAGTTGTCACGAC+TGG | 0.558560 | 7.1:-43288210 | None:intergenic |
CCAGGTGTGTGTGTCGATGA+TGG | 0.560213 | 7.1:-43284999 | None:intergenic |
AGTTGGTCCATGGTAATTCA+GGG | 0.560693 | 7.1:+43282036 | MS.gene65090:CDS |
CTACAATCGAAATCTGGGTT+AGG | 0.560952 | 7.1:+43282302 | MS.gene65090:CDS |
TTGAACCCCATGAACTCTGA+AGG | 0.565456 | 7.1:+43281748 | MS.gene65090:CDS |
TTTGCAGGGTCATCCTGAGC+CGG | 0.566190 | 7.1:+43287311 | MS.gene65090:intron |
CCATCATCGACACACACACC+TGG | 0.568091 | 7.1:+43284999 | MS.gene65090:CDS |
AGAGTTGTCACGACTGGCAG+AGG | 0.573691 | 7.1:-43288204 | None:intergenic |
CATCTGAATCCATTGAATGA+GGG | 0.576618 | 7.1:-43281834 | None:intergenic |
GTTACAAGTCTTCCATTGAA+GGG | 0.577894 | 7.1:+43283869 | MS.gene65090:CDS |
TATGCAGCTAAATTCAGCAA+AGG | 0.578065 | 7.1:-43285660 | None:intergenic |
TCCCAACAAATATTGTTCAC+CGG | 0.579006 | 7.1:-43287330 | None:intergenic |
TCGACACACACACCTGGTGA+TGG | 0.580879 | 7.1:+43285005 | MS.gene65090:CDS |
TTGATAGCAATTGATGCACC+TGG | 0.581055 | 7.1:+43281141 | MS.gene65090:intron |
CAGACAAATTTACTCACTCC+AGG | 0.587469 | 7.1:+43286908 | MS.gene65090:CDS |
ACTGGTACTGGAAACACAGC+TGG | 0.587738 | 7.1:+43284960 | MS.gene65090:CDS |
CTTCTTAGGGTGGAAATCAA+GGG | 0.588390 | 7.1:-43286631 | None:intergenic |
ATTGTGTTCAAGAATATAGC+GGG | 0.590018 | 7.1:+43286589 | MS.gene65090:CDS |
GCAACTTTATTAGTAGTCGG+AGG | 0.592041 | 7.1:+43287486 | MS.gene65090:CDS |
GTGACAACTCTGTAAAGTTG+TGG | 0.593245 | 7.1:+43288216 | MS.gene65090:CDS |
GTGTGCAGTCCTTAGAGCTG+TGG | 0.595446 | 7.1:+43288093 | MS.gene65090:intron |
TATTGCAGCAAATGCAGGCA+CGG | 0.597994 | 7.1:+43282072 | MS.gene65090:CDS |
CACTCAAAGAGAAATCCTCC+AGG | 0.599972 | 7.1:-43281159 | None:intergenic |
AATGCAATCAGGTTCACCTA+AGG | 0.600370 | 7.1:+43284237 | MS.gene65090:CDS |
ATCAAAGGAGAAGTTAACAT+TGG | 0.600466 | 7.1:+43282227 | MS.gene65090:CDS |
AAATATCAGTCTTCTTAGGG+TGG | 0.601273 | 7.1:-43286641 | None:intergenic |
GCAAAAGTGAGGTTTCAGCC+TGG | 0.602949 | 7.1:+43286822 | MS.gene65090:CDS |
TCGAGGTAGCTTAAACGCAA+AGG | 0.606036 | 7.1:+43284174 | MS.gene65090:CDS |
AGACTTTCTGGTCTTTCTCG+AGG | 0.606690 | 7.1:+43284157 | MS.gene65090:CDS |
CGATAAACTGACGAATCCAT+GGG | 0.609032 | 7.1:-43282269 | None:intergenic |
GATGTATTTAATCCATCACC+AGG | 0.609873 | 7.1:-43285017 | None:intergenic |
GGTAGCTTAAACGCAAAGGA+TGG | 0.610775 | 7.1:+43284178 | MS.gene65090:CDS |
TGAACCTGATTGCATTTGGG+AGG | 0.613490 | 7.1:-43284230 | None:intergenic |
CTTAGATACACGGGTACACG+AGG | 0.614445 | 7.1:-43286715 | None:intergenic |
ATAGTTCGATTTGGAGATGT+GGG | 0.615147 | 7.1:+43285439 | MS.gene65090:CDS |
ACAACAACAGGTCTTGGCAC+AGG | 0.616147 | 7.1:+43284078 | MS.gene65090:CDS |
AAAGTTTCAACTGATCCAGT+AGG | 0.618148 | 7.1:+43280916 | MS.gene65090:CDS |
GCAGAGAGTCCATATTCCAC+AGG | 0.618226 | 7.1:-43286301 | None:intergenic |
TTGACCAACCTTAGATACAC+GGG | 0.620122 | 7.1:-43286724 | None:intergenic |
TGAACTTGTACACCCAAACC+AGG | 0.624306 | 7.1:-43284010 | None:intergenic |
AATCAGCAACAAGTCATCAA+GGG | 0.625746 | 7.1:+43281899 | MS.gene65090:CDS |
TATAGTTCGATTTGGAGATG+TGG | 0.625894 | 7.1:+43285438 | MS.gene65090:CDS |
CTCCTGAACGCATTCTCCTG+AGG | 0.626633 | 7.1:-43287412 | None:intergenic |
TTTGACCAACCTTAGATACA+CGG | 0.626725 | 7.1:-43286725 | None:intergenic |
CCTAATCATCCTGGACTGGG+TGG | 0.629932 | 7.1:+43281721 | MS.gene65090:CDS |
ACATATTCCCTGAATTACCA+TGG | 0.638649 | 7.1:-43282043 | None:intergenic |
AGGGAGGTAATGCAAAAGTG+AGG | 0.639313 | 7.1:+43286811 | MS.gene65090:intron |
AACAAATGAGATGCATTCTG+AGG | 0.639499 | 7.1:+43281215 | MS.gene65090:CDS |
GACGAATATATCCCAAAAGA+CGG | 0.642895 | 7.1:-43281187 | None:intergenic |
GCATGTATCAGGTTGTCCTG+TGG | 0.643655 | 7.1:+43286285 | MS.gene65090:intron |
CCGCACAGATTTGTCACATG+AGG | 0.645521 | 7.1:-43286405 | None:intergenic |
ACATACCTTCAGAGTTCATG+GGG | 0.646193 | 7.1:-43281753 | None:intergenic |
GGGTCAAGCTCAAACTACCT+GGG | 0.646480 | 7.1:+43280664 | MS.gene65090:CDS |
GGGTGCTTTAGATGATAATG+TGG | 0.647528 | 7.1:+43285459 | MS.gene65090:CDS |
GGAATTGATCAACTAAGACC+TGG | 0.651794 | 7.1:+43283992 | MS.gene65090:CDS |
AATAAAACAAAGCCCAGCTG+AGG | 0.653660 | 7.1:+43285531 | MS.gene65090:CDS |
TGAACTCTGAAGGTATGTTG+GGG | 0.670256 | 7.1:+43281758 | MS.gene65090:CDS |
TCAGTAGACCCAGCAGACGA+AGG | 0.671863 | 7.1:+43281627 | MS.gene65090:intron |
TATTGTGTTCAAGAATATAG+CGG | 0.672769 | 7.1:+43286588 | MS.gene65090:CDS |
ATAGCAATTGATGCACCTGG+AGG | 0.686315 | 7.1:+43281144 | MS.gene65090:intron |
GGCTGCTGCATCTTACATCG+AGG | 0.712980 | 7.1:+43281236 | MS.gene65090:CDS |
TAATTCAGGGAATATGTCTG+CGG | 0.721386 | 7.1:+43282049 | MS.gene65090:CDS |
TATGGTGCAGAAGCAACTGG+AGG | 0.725329 | 7.1:+43285086 | MS.gene65090:CDS |
GATGATGGTGAATTAGGTGA+AGG | 0.730577 | 7.1:-43284984 | None:intergenic |
TGTGGAATATGGACTCTCTG+CGG | 0.738954 | 7.1:+43286303 | MS.gene65090:CDS |
GAAAGACCAGAAAGTCTACG+TGG | 0.762815 | 7.1:-43284151 | None:intergenic |
CCTCATGTGACAAATCTGTG+CGG | 0.774368 | 7.1:+43286405 | MS.gene65090:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 43280650 | 43288244 | 43280650 | ID=MS.gene65090 |
chr7.1 | mRNA | 43280650 | 43288244 | 43280650 | ID=MS.gene65090.t1;Parent=MS.gene65090 |
chr7.1 | exon | 43280650 | 43280699 | 43280650 | ID=MS.gene65090.t1.exon1;Parent=MS.gene65090.t1 |
chr7.1 | CDS | 43280650 | 43280699 | 43280650 | ID=cds.MS.gene65090.t1;Parent=MS.gene65090.t1 |
chr7.1 | exon | 43280840 | 43280937 | 43280840 | ID=MS.gene65090.t1.exon2;Parent=MS.gene65090.t1 |
chr7.1 | CDS | 43280840 | 43280937 | 43280840 | ID=cds.MS.gene65090.t1;Parent=MS.gene65090.t1 |
chr7.1 | exon | 43281148 | 43281257 | 43281148 | ID=MS.gene65090.t1.exon3;Parent=MS.gene65090.t1 |
chr7.1 | CDS | 43281148 | 43281257 | 43281148 | ID=cds.MS.gene65090.t1;Parent=MS.gene65090.t1 |
chr7.1 | exon | 43281634 | 43281920 | 43281634 | ID=MS.gene65090.t1.exon4;Parent=MS.gene65090.t1 |
chr7.1 | CDS | 43281634 | 43281920 | 43281634 | ID=cds.MS.gene65090.t1;Parent=MS.gene65090.t1 |
chr7.1 | exon | 43282034 | 43282109 | 43282034 | ID=MS.gene65090.t1.exon5;Parent=MS.gene65090.t1 |
chr7.1 | CDS | 43282034 | 43282109 | 43282034 | ID=cds.MS.gene65090.t1;Parent=MS.gene65090.t1 |
chr7.1 | exon | 43282224 | 43282332 | 43282224 | ID=MS.gene65090.t1.exon6;Parent=MS.gene65090.t1 |
chr7.1 | CDS | 43282224 | 43282332 | 43282224 | ID=cds.MS.gene65090.t1;Parent=MS.gene65090.t1 |
chr7.1 | exon | 43283855 | 43283904 | 43283855 | ID=MS.gene65090.t1.exon7;Parent=MS.gene65090.t1 |
chr7.1 | CDS | 43283855 | 43283904 | 43283855 | ID=cds.MS.gene65090.t1;Parent=MS.gene65090.t1 |
chr7.1 | exon | 43283992 | 43284258 | 43283992 | ID=MS.gene65090.t1.exon8;Parent=MS.gene65090.t1 |
chr7.1 | CDS | 43283992 | 43284258 | 43283992 | ID=cds.MS.gene65090.t1;Parent=MS.gene65090.t1 |
chr7.1 | exon | 43284912 | 43285133 | 43284912 | ID=MS.gene65090.t1.exon9;Parent=MS.gene65090.t1 |
chr7.1 | CDS | 43284912 | 43285133 | 43284912 | ID=cds.MS.gene65090.t1;Parent=MS.gene65090.t1 |
chr7.1 | exon | 43285433 | 43285574 | 43285433 | ID=MS.gene65090.t1.exon10;Parent=MS.gene65090.t1 |
chr7.1 | CDS | 43285433 | 43285574 | 43285433 | ID=cds.MS.gene65090.t1;Parent=MS.gene65090.t1 |
chr7.1 | exon | 43285654 | 43285760 | 43285654 | ID=MS.gene65090.t1.exon11;Parent=MS.gene65090.t1 |
chr7.1 | CDS | 43285654 | 43285760 | 43285654 | ID=cds.MS.gene65090.t1;Parent=MS.gene65090.t1 |
chr7.1 | exon | 43286296 | 43286445 | 43286296 | ID=MS.gene65090.t1.exon12;Parent=MS.gene65090.t1 |
chr7.1 | CDS | 43286296 | 43286445 | 43286296 | ID=cds.MS.gene65090.t1;Parent=MS.gene65090.t1 |
chr7.1 | exon | 43286582 | 43286737 | 43286582 | ID=MS.gene65090.t1.exon13;Parent=MS.gene65090.t1 |
chr7.1 | CDS | 43286582 | 43286737 | 43286582 | ID=cds.MS.gene65090.t1;Parent=MS.gene65090.t1 |
chr7.1 | exon | 43286813 | 43286929 | 43286813 | ID=MS.gene65090.t1.exon14;Parent=MS.gene65090.t1 |
chr7.1 | CDS | 43286813 | 43286929 | 43286813 | ID=cds.MS.gene65090.t1;Parent=MS.gene65090.t1 |
chr7.1 | exon | 43287318 | 43287515 | 43287318 | ID=MS.gene65090.t1.exon15;Parent=MS.gene65090.t1 |
chr7.1 | CDS | 43287318 | 43287515 | 43287318 | ID=cds.MS.gene65090.t1;Parent=MS.gene65090.t1 |
chr7.1 | exon | 43288101 | 43288244 | 43288101 | ID=MS.gene65090.t1.exon16;Parent=MS.gene65090.t1 |
chr7.1 | CDS | 43288101 | 43288244 | 43288101 | ID=cds.MS.gene65090.t1;Parent=MS.gene65090.t1 |
Gene Sequence |
Protein sequence |