Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65244.t1 | XP_013451617.1 | 95.6 | 344 | 15 | 0 | 1 | 344 | 1 | 344 | 1.90E-188 | 668.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65244.t1 | Q9FMU6 | 69.6 | 365 | 93 | 3 | 4 | 351 | 7 | 370 | 2.9e-148 | 526.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65244.t1 | A0A072UIJ9 | 95.6 | 344 | 15 | 0 | 1 | 344 | 1 | 344 | 1.4e-188 | 668.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049283 | MS.gene65244 | 0.823799 | 1.14E-53 | -1.69E-46 |
MS.gene052053 | MS.gene65244 | 0.811577 | 6.53E-51 | -1.69E-46 |
MS.gene053963 | MS.gene65244 | 0.8279 | 1.21E-54 | -1.69E-46 |
MS.gene054892 | MS.gene65244 | 0.858046 | 1.08E-62 | -1.69E-46 |
MS.gene054893 | MS.gene65244 | 0.858404 | 8.43E-63 | -1.69E-46 |
MS.gene054957 | MS.gene65244 | 0.818901 | 1.54E-52 | -1.69E-46 |
MS.gene055147 | MS.gene65244 | 0.848248 | 6.92E-60 | -1.69E-46 |
MS.gene055148 | MS.gene65244 | 0.852114 | 5.71E-61 | -1.69E-46 |
MS.gene055150 | MS.gene65244 | 0.826248 | 3.01E-54 | -1.69E-46 |
MS.gene055226 | MS.gene65244 | 0.804733 | 1.87E-49 | -1.69E-46 |
MS.gene056100 | MS.gene65244 | 0.804149 | 2.48E-49 | -1.69E-46 |
MS.gene057622 | MS.gene65244 | 0.825006 | 5.93E-54 | -1.69E-46 |
MS.gene05952 | MS.gene65244 | 0.819165 | 1.34E-52 | -1.69E-46 |
MS.gene05956 | MS.gene65244 | 0.807088 | 6.00E-50 | -1.69E-46 |
MS.gene05985 | MS.gene65244 | -0.814197 | 1.74E-51 | -1.69E-46 |
MS.gene06023 | MS.gene65244 | 0.806236 | 9.07E-50 | -1.69E-46 |
MS.gene060412 | MS.gene65244 | 0.814645 | 1.39E-51 | -1.69E-46 |
MS.gene060413 | MS.gene65244 | 0.800829 | 1.20E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65244.t1 | MTR_6g033280 | 95.627 | 343 | 15 | 0 | 1 | 343 | 1 | 343 | 0.0 | 677 |
MS.gene65244.t1 | MTR_7g083790 | 71.629 | 356 | 91 | 3 | 3 | 349 | 14 | 368 | 0.0 | 523 |
MS.gene65244.t1 | MTR_8g099910 | 76.699 | 309 | 68 | 1 | 39 | 347 | 53 | 357 | 0.0 | 506 |
MS.gene65244.t1 | MTR_4g094578 | 44.138 | 290 | 160 | 1 | 57 | 344 | 23 | 312 | 1.10e-91 | 277 |
MS.gene65244.t1 | MTR_5g024770 | 44.286 | 280 | 134 | 1 | 58 | 337 | 16 | 273 | 3.60e-83 | 254 |
MS.gene65244.t1 | MTR_6g034515 | 26.690 | 281 | 172 | 9 | 73 | 335 | 77 | 341 | 2.62e-16 | 79.7 |
MS.gene65244.t1 | MTR_8g027975 | 25.500 | 200 | 125 | 5 | 64 | 239 | 154 | 353 | 1.67e-14 | 74.3 |
MS.gene65244.t1 | MTR_8g027975 | 27.313 | 227 | 151 | 5 | 64 | 279 | 52 | 275 | 4.37e-13 | 70.1 |
MS.gene65244.t1 | MTR_5g073040 | 26.552 | 290 | 186 | 5 | 58 | 332 | 34 | 311 | 1.97e-14 | 73.6 |
MS.gene65244.t1 | MTR_5g009500 | 25.253 | 198 | 126 | 5 | 64 | 239 | 141 | 338 | 3.79e-14 | 73.2 |
MS.gene65244.t1 | MTR_5g009500 | 28.821 | 229 | 145 | 8 | 64 | 279 | 39 | 262 | 6.74e-13 | 69.3 |
MS.gene65244.t1 | MTR_8g076760 | 26.368 | 201 | 116 | 6 | 61 | 239 | 115 | 305 | 4.58e-14 | 72.4 |
MS.gene65244.t1 | MTR_8g076760 | 26.590 | 173 | 109 | 5 | 79 | 239 | 30 | 196 | 8.32e-12 | 65.9 |
MS.gene65244.t1 | MTR_8g098240 | 25.610 | 328 | 210 | 13 | 27 | 340 | 289 | 596 | 8.79e-14 | 72.8 |
MS.gene65244.t1 | MTR_1g012030 | 26.154 | 195 | 140 | 3 | 64 | 258 | 140 | 330 | 1.85e-13 | 71.2 |
MS.gene65244.t1 | MTR_1g012030 | 31.395 | 172 | 106 | 5 | 69 | 233 | 238 | 404 | 2.56e-13 | 70.9 |
MS.gene65244.t1 | MTR_8g096050 | 28.436 | 211 | 142 | 5 | 64 | 271 | 228 | 432 | 3.10e-13 | 70.9 |
MS.gene65244.t1 | MTR_8g096050 | 26.404 | 178 | 120 | 4 | 66 | 235 | 324 | 498 | 6.14e-12 | 67.0 |
MS.gene65244.t1 | MTR_3g107510 | 29.379 | 177 | 112 | 4 | 61 | 233 | 220 | 387 | 3.59e-13 | 70.5 |
MS.gene65244.t1 | MTR_3g107510 | 24.706 | 170 | 125 | 2 | 66 | 235 | 125 | 291 | 3.14e-11 | 64.3 |
MS.gene65244.t1 | MTR_2g436930 | 26.768 | 198 | 118 | 7 | 59 | 233 | 35 | 228 | 1.44e-12 | 67.0 |
MS.gene65244.t1 | MTR_7g066690 | 26.872 | 227 | 134 | 8 | 72 | 279 | 26 | 239 | 1.64e-12 | 67.8 |
MS.gene65244.t1 | MTR_4g119770 | 22.176 | 239 | 159 | 4 | 65 | 279 | 16 | 251 | 1.70e-12 | 67.0 |
MS.gene65244.t1 | MTR_4g057850 | 23.214 | 224 | 157 | 4 | 63 | 279 | 22 | 237 | 2.69e-12 | 67.0 |
MS.gene65244.t1 | MTR_2g436930 | 26.768 | 198 | 118 | 7 | 59 | 233 | 125 | 318 | 2.90e-12 | 67.4 |
MS.gene65244.t1 | MTR_2g436930 | 22.857 | 245 | 158 | 5 | 60 | 279 | 12 | 250 | 1.87e-11 | 64.7 |
MS.gene65244.t1 | MTR_4g119770 | 22.176 | 239 | 159 | 4 | 65 | 279 | 16 | 251 | 3.66e-12 | 67.0 |
MS.gene65244.t1 | MTR_4g119770 | 23.902 | 205 | 127 | 7 | 59 | 239 | 126 | 325 | 5.20e-12 | 66.6 |
MS.gene65244.t1 | MTR_4g114320 | 25.946 | 185 | 131 | 3 | 61 | 242 | 216 | 397 | 4.67e-12 | 67.0 |
MS.gene65244.t1 | MTR_4g114320 | 24.312 | 218 | 147 | 6 | 49 | 257 | 104 | 312 | 1.01e-11 | 65.9 |
MS.gene65244.t1 | MTR_3g100570 | 25.000 | 260 | 153 | 6 | 59 | 289 | 6 | 252 | 5.52e-12 | 66.2 |
MS.gene65244.t1 | MTR_7g064980 | 26.036 | 169 | 113 | 4 | 79 | 239 | 150 | 314 | 8.16e-12 | 65.9 |
MS.gene65244.t1 | MTR_4g018750 | 27.600 | 250 | 147 | 9 | 72 | 300 | 24 | 260 | 1.43e-11 | 64.7 |
MS.gene65244.t1 | MTR_7g084400 | 25.887 | 282 | 193 | 8 | 64 | 337 | 214 | 487 | 2.44e-11 | 65.1 |
MS.gene65244.t1 | MTR_4g018750 | 27.313 | 227 | 133 | 8 | 72 | 279 | 24 | 237 | 2.65e-11 | 63.9 |
MS.gene65244.t1 | MTR_7g068340 | 24.645 | 211 | 135 | 6 | 79 | 281 | 103 | 297 | 3.22e-11 | 64.3 |
MS.gene65244.t1 | MTR_7g068340 | 24.561 | 171 | 121 | 4 | 70 | 239 | 193 | 356 | 4.39e-11 | 63.9 |
MS.gene65244.t1 | MTR_1g088995 | 24.206 | 252 | 161 | 8 | 57 | 299 | 31 | 261 | 3.62e-11 | 63.9 |
MS.gene65244.t1 | MTR_1g087840 | 27.168 | 173 | 106 | 6 | 77 | 235 | 33 | 199 | 5.23e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65244.t1 | AT5G14040 | 68.852 | 366 | 96 | 2 | 3 | 351 | 6 | 370 | 0.0 | 525 |
MS.gene65244.t1 | AT3G48850 | 68.079 | 354 | 100 | 3 | 2 | 346 | 5 | 354 | 0.0 | 506 |
MS.gene65244.t1 | AT2G17270 | 48.333 | 300 | 150 | 3 | 52 | 351 | 11 | 305 | 9.15e-102 | 302 |
MS.gene65244.t1 | AT5G51050 | 27.273 | 286 | 184 | 8 | 64 | 337 | 224 | 497 | 2.62e-17 | 83.2 |
MS.gene65244.t1 | AT5G66380 | 27.232 | 224 | 126 | 9 | 49 | 249 | 99 | 308 | 2.73e-15 | 75.9 |
MS.gene65244.t1 | AT5G66380 | 24.510 | 204 | 139 | 4 | 63 | 255 | 10 | 209 | 7.44e-11 | 62.8 |
MS.gene65244.t1 | AT4G01100 | 25.442 | 283 | 179 | 8 | 23 | 279 | 4 | 280 | 1.38e-14 | 74.3 |
MS.gene65244.t1 | AT4G01100 | 24.500 | 200 | 127 | 5 | 64 | 239 | 159 | 358 | 2.43e-12 | 67.8 |
MS.gene65244.t1 | AT1G25380 | 29.730 | 185 | 114 | 6 | 73 | 245 | 131 | 311 | 2.77e-14 | 73.6 |
MS.gene65244.t1 | AT1G25380 | 29.730 | 185 | 114 | 6 | 73 | 245 | 131 | 311 | 2.77e-14 | 73.6 |
MS.gene65244.t1 | AT4G01100 | 25.926 | 270 | 180 | 8 | 23 | 279 | 4 | 266 | 3.36e-14 | 73.2 |
MS.gene65244.t1 | AT4G01100 | 24.500 | 200 | 127 | 5 | 64 | 239 | 145 | 344 | 1.59e-12 | 68.2 |
MS.gene65244.t1 | AT3G53940 | 25.581 | 172 | 116 | 4 | 76 | 239 | 193 | 360 | 4.62e-13 | 70.1 |
MS.gene65244.t1 | AT1G07030 | 26.590 | 173 | 118 | 2 | 64 | 233 | 41 | 207 | 7.49e-13 | 68.9 |
MS.gene65244.t1 | AT4G03115 | 26.160 | 237 | 152 | 8 | 67 | 299 | 46 | 263 | 1.21e-12 | 68.2 |
MS.gene65244.t1 | AT4G01100 | 24.500 | 200 | 127 | 5 | 64 | 239 | 95 | 294 | 1.27e-12 | 68.2 |
MS.gene65244.t1 | AT4G01100 | 26.941 | 219 | 146 | 6 | 72 | 279 | 1 | 216 | 3.02e-12 | 67.0 |
MS.gene65244.t1 | AT2G30160 | 26.804 | 194 | 129 | 3 | 64 | 250 | 43 | 230 | 1.41e-12 | 68.2 |
MS.gene65244.t1 | AT5G01500 | 27.684 | 177 | 120 | 4 | 64 | 239 | 219 | 388 | 1.76e-12 | 68.6 |
MS.gene65244.t1 | AT4G32400 | 30.000 | 170 | 111 | 4 | 69 | 233 | 213 | 379 | 2.21e-12 | 68.2 |
MS.gene65244.t1 | AT4G32400 | 24.590 | 244 | 172 | 5 | 64 | 307 | 115 | 346 | 3.10e-11 | 64.7 |
MS.gene65244.t1 | AT4G03115 | 26.160 | 237 | 152 | 8 | 67 | 299 | 78 | 295 | 2.67e-12 | 67.4 |
MS.gene65244.t1 | AT3G21390 | 26.866 | 201 | 118 | 7 | 59 | 233 | 127 | 324 | 3.76e-12 | 67.0 |
MS.gene65244.t1 | AT3G21390 | 26.866 | 201 | 118 | 7 | 59 | 233 | 149 | 346 | 4.04e-12 | 67.0 |
MS.gene65244.t1 | AT5G48970 | 26.263 | 198 | 122 | 5 | 59 | 233 | 61 | 257 | 1.00e-11 | 65.1 |
MS.gene65244.t1 | AT1G79900 | 23.651 | 241 | 172 | 4 | 7 | 247 | 62 | 290 | 1.08e-11 | 65.1 |
MS.gene65244.t1 | AT3G51870 | 22.093 | 172 | 126 | 3 | 69 | 239 | 196 | 360 | 1.13e-11 | 65.9 |
MS.gene65244.t1 | AT5G48970 | 26.263 | 198 | 122 | 5 | 59 | 233 | 132 | 328 | 1.15e-11 | 65.5 |
MS.gene65244.t1 | AT5G48970 | 22.857 | 245 | 161 | 5 | 60 | 279 | 19 | 260 | 5.04e-11 | 63.5 |
MS.gene65244.t1 | AT3G54110 | 24.719 | 267 | 158 | 10 | 46 | 291 | 4 | 248 | 1.35e-11 | 65.1 |
MS.gene65244.t1 | AT2G37890 | 26.163 | 172 | 115 | 4 | 76 | 239 | 165 | 332 | 1.51e-11 | 65.1 |
MS.gene65244.t1 | AT3G20240 | 23.292 | 322 | 203 | 9 | 36 | 332 | 34 | 336 | 1.74e-11 | 65.1 |
MS.gene65244.t1 | AT4G11440 | 24.542 | 273 | 187 | 6 | 75 | 337 | 342 | 605 | 2.25e-11 | 65.5 |
MS.gene65244.t1 | AT4G11440 | 24.542 | 273 | 187 | 6 | 75 | 337 | 342 | 605 | 2.25e-11 | 65.5 |
MS.gene65244.t1 | AT4G03115 | 26.667 | 180 | 117 | 5 | 67 | 242 | 46 | 214 | 2.51e-11 | 63.2 |
MS.gene65244.t1 | AT4G03115 | 26.667 | 180 | 117 | 5 | 67 | 242 | 46 | 214 | 2.78e-11 | 63.2 |
MS.gene65244.t1 | AT2G33820 | 25.847 | 236 | 157 | 7 | 79 | 300 | 34 | 265 | 4.70e-11 | 63.5 |
MS.gene65244.t1 | AT4G26180 | 22.256 | 328 | 188 | 9 | 50 | 338 | 13 | 312 | 9.79e-11 | 62.8 |
Find 97 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTTCAGATCTGAGCAATT+TGG | 0.187636 | 6.2:-23127194 | None:intergenic |
GCACAAGGTGCTTTCAAATA+TGG | 0.247065 | 6.2:+23126974 | MS.gene65244:CDS |
TTGTCCATTTGAGGCAATTA+AGG | 0.262012 | 6.2:+23127120 | MS.gene65244:CDS |
CAAGGGCGTTGTACCTCTTT+GGG | 0.263647 | 6.2:+23127667 | MS.gene65244:CDS |
TCTCCCTCTTCGAATTCTTA+TGG | 0.265900 | 6.2:+23128547 | MS.gene65244:CDS |
ATTCCTTCTCCCAGTGAATC+TGG | 0.282142 | 6.2:+23126239 | MS.gene65244:CDS |
ACAAGGGCGTTGTACCTCTT+TGG | 0.286638 | 6.2:+23127666 | MS.gene65244:CDS |
CTGTGAAGAAGTTGGGATTA+TGG | 0.287366 | 6.2:+23128507 | MS.gene65244:CDS |
AAGAGCATTTCCTCAGGATT+TGG | 0.293211 | 6.2:+23126881 | MS.gene65244:CDS |
ATCAGCAGCAGTTGCTCCTT+TGG | 0.315192 | 6.2:-23128135 | None:intergenic |
GGATGGGCACCAACATTTCT+TGG | 0.315259 | 6.2:+23126944 | MS.gene65244:CDS |
AACTCTAACCGGAGCTCAAT+GGG | 0.324460 | 6.2:+23128574 | MS.gene65244:CDS |
CCTTCAGATCTGAGCAATTT+GGG | 0.337308 | 6.2:-23127193 | None:intergenic |
TGTGAAGAAGTTGGGATTAT+GGG | 0.338340 | 6.2:+23128508 | MS.gene65244:CDS |
TACTATCTTGCTTGCGCCGT+TGG | 0.367277 | 6.2:+23126293 | MS.gene65244:CDS |
CACAAGGTGCTTTCAAATAT+GGG | 0.381124 | 6.2:+23126975 | MS.gene65244:CDS |
CTCAGATCTGAAGGAGTCTC+AGG | 0.382857 | 6.2:+23127202 | MS.gene65244:CDS |
GTGCATTCTTCCTTTGGTGT+AGG | 0.391511 | 6.2:-23128005 | None:intergenic |
CTTATGGTTGGAACTCTAAC+CGG | 0.393210 | 6.2:+23128563 | MS.gene65244:CDS |
CTCAAGGAACAAGGAGTTAG+AGG | 0.409377 | 6.2:+23126911 | MS.gene65244:CDS |
AAGACATTAGTCTACCTTGC+TGG | 0.423131 | 6.2:+23127061 | MS.gene65244:CDS |
TGGACCAACAACATCTGAAT+AGG | 0.423609 | 6.2:-23127020 | None:intergenic |
TTTGCTAGAGGTCTTTCTGA+TGG | 0.431106 | 6.2:+23127166 | MS.gene65244:CDS |
CTAACCTTAATTGCCTCAAA+TGG | 0.433715 | 6.2:-23127124 | None:intergenic |
ATTCCTTCTCCCAGATTCAC+TGG | 0.435366 | 6.2:-23126249 | None:intergenic |
TGCATTCTTCCTTTGGTGTA+GGG | 0.436971 | 6.2:-23128004 | None:intergenic |
CCTCTTCGAATTCTTATGGT+TGG | 0.441909 | 6.2:+23128551 | MS.gene65244:CDS |
GAAATGCTCTTGTACTTAGC+AGG | 0.446308 | 6.2:-23126869 | None:intergenic |
TTCTTCCTTTGGTGTAGGGA+TGG | 0.448749 | 6.2:-23128000 | None:intergenic |
TTGTTGTGGATTTACTCATA+TGG | 0.450811 | 6.2:+23126325 | MS.gene65244:CDS |
CAATGATTTCAGGTTGTACA+AGG | 0.451404 | 6.2:+23127649 | MS.gene65244:intron |
CAAAGCTAAGAAGCAGAAAT+CGG | 0.451751 | 6.2:-23128777 | None:intergenic |
TCCTTTATCAGGCCAACCAC+TGG | 0.452524 | 6.2:+23128738 | MS.gene65244:intron |
CAACACTCACACCAAGTTGT+AGG | 0.458197 | 6.2:-23128034 | None:intergenic |
TATCTTGCTTGCGCCGTTGG+TGG | 0.461277 | 6.2:+23126296 | MS.gene65244:CDS |
TGTTGCACTTTGTCCATTTG+AGG | 0.466804 | 6.2:+23127111 | MS.gene65244:CDS |
GAACTCTAACCGGAGCTCAA+TGG | 0.482681 | 6.2:+23128573 | MS.gene65244:CDS |
CAACTTGGTGTGAGTGTTGT+CGG | 0.483390 | 6.2:+23128038 | MS.gene65244:CDS |
CCCAAATTGCTCAGATCTGA+AGG | 0.485546 | 6.2:+23127193 | MS.gene65244:CDS |
AACACTCACACCAAGTTGTA+GGG | 0.491562 | 6.2:-23128033 | None:intergenic |
GGAGAAGGAATCATAAACTT+AGG | 0.505347 | 6.2:-23126227 | None:intergenic |
GCAGTTGAGTAGAGGAAGCT+TGG | 0.516553 | 6.2:-23126140 | None:intergenic |
CCGCCGCCACATGATGGACG+TGG | 0.516892 | 6.2:-23126199 | None:intergenic |
CTCCCAGATTCACTGGGAGA+AGG | 0.522248 | 6.2:-23126242 | None:intergenic |
TTCCTTCTCCCAGTGAATCT+GGG | 0.522764 | 6.2:+23126240 | MS.gene65244:CDS |
TTGCTCCTTTGGAACTGTTG+AGG | 0.524603 | 6.2:-23128124 | None:intergenic |
AAAGAGACAAGATTATCTGC+AGG | 0.540708 | 6.2:-23128101 | None:intergenic |
CACAACTGCACATAATATAC+CGG | 0.540838 | 6.2:-23128072 | None:intergenic |
TGATGCATTCAAAGTTTCTG+TGG | 0.542954 | 6.2:+23128604 | MS.gene65244:CDS |
AAGTCCTATTCAGATGTTGT+TGG | 0.545723 | 6.2:+23127016 | MS.gene65244:CDS |
ATAAATTCCCCATTGAGCTC+CGG | 0.548121 | 6.2:-23128582 | None:intergenic |
TGCTGGATCAGCTTCTGCTG+AGG | 0.551750 | 6.2:+23127078 | MS.gene65244:CDS |
GAGATTCCGCCGCCACATGA+TGG | 0.552179 | 6.2:-23126205 | None:intergenic |
GATGCATTCAAAGTTTCTGT+GGG | 0.552496 | 6.2:+23128605 | MS.gene65244:CDS |
CCACGTCCATCATGTGGCGG+CGG | 0.557007 | 6.2:+23126199 | MS.gene65244:CDS |
CTCCCAGTGAATCTGGGAGA+AGG | 0.560633 | 6.2:+23126246 | MS.gene65244:CDS |
TCTTTCCTCAACAGTTCCAA+AGG | 0.563971 | 6.2:+23128119 | MS.gene65244:CDS |
AAGGGCGTTGTACCTCTTTG+GGG | 0.565393 | 6.2:+23127668 | MS.gene65244:CDS |
TAAGAAGCAGAAATCGGAGC+AGG | 0.567869 | 6.2:-23128771 | None:intergenic |
ATGCAGGCTGTGAAGAAGTT+GGG | 0.568691 | 6.2:+23128500 | MS.gene65244:intron |
TTCCTTCTCCCAGATTCACT+GGG | 0.570507 | 6.2:-23126248 | None:intergenic |
AAGTACAAGAGCATTTCCTC+AGG | 0.571463 | 6.2:+23126875 | MS.gene65244:CDS |
TTTATCAGGCCAACCACTGG+TGG | 0.576104 | 6.2:+23128741 | MS.gene65244:intron |
AATGCAGGCTGTGAAGAAGT+TGG | 0.576794 | 6.2:+23128499 | MS.gene65244:intron |
GTCGCCTCAGAAGAAGATCA+TGG | 0.578742 | 6.2:+23126166 | MS.gene65244:CDS |
GTTGTCGGTGGATATTTAGC+CGG | 0.581741 | 6.2:+23128053 | MS.gene65244:CDS |
GGAGCAACACCACCAGTGGT+TGG | 0.584791 | 6.2:-23128750 | None:intergenic |
GTTAGAGTTCAAACTCAACC+TGG | 0.590024 | 6.2:+23127142 | MS.gene65244:CDS |
GCGACGAGGCAGTTGAGTAG+AGG | 0.592476 | 6.2:-23126148 | None:intergenic |
AGCAGGAGCAACACCACCAG+TGG | 0.606837 | 6.2:-23128754 | None:intergenic |
TTACATTTGACAAGATCAAG+AGG | 0.607792 | 6.2:-23126356 | None:intergenic |
TCTTCCATGATCTTCTTCTG+AGG | 0.607964 | 6.2:-23126170 | None:intergenic |
TTTCTTGGTTACAGTGCACA+AGG | 0.613928 | 6.2:+23126959 | MS.gene65244:CDS |
GTGAAGAAGTTGGGATTATG+GGG | 0.615409 | 6.2:+23128509 | MS.gene65244:CDS |
TCTTGTCAAATGTAACATGC+AGG | 0.616213 | 6.2:+23126364 | MS.gene65244:CDS |
GTTGGTGGAAGTATTTGTTG+TGG | 0.617067 | 6.2:+23126311 | MS.gene65244:CDS |
GGAGTGATGCTCAAGGAACA+AGG | 0.620748 | 6.2:+23126902 | MS.gene65244:CDS |
AAATGCTCTTGTACTTAGCA+GGG | 0.620905 | 6.2:-23126868 | None:intergenic |
CAGCAGAAGCTGATCCAGCA+AGG | 0.621627 | 6.2:-23127075 | None:intergenic |
CAACCATAAGAATTCGAAGA+GGG | 0.629648 | 6.2:-23128550 | None:intergenic |
AGGATTTGGAGTGATGCTCA+AGG | 0.637160 | 6.2:+23126895 | MS.gene65244:CDS |
ACAACAAATACTTCCACCAA+CGG | 0.638726 | 6.2:-23126309 | None:intergenic |
CGCCGCCACATGATGGACGT+GGG | 0.639778 | 6.2:-23126198 | None:intergenic |
CGTTTCCCACGTCCATCATG+TGG | 0.641929 | 6.2:+23126193 | MS.gene65244:CDS |
GCATGCCATCCCTACACCAA+AGG | 0.646638 | 6.2:+23127995 | MS.gene65244:CDS |
GGAACTTGTCTTCCCCAAAG+AGG | 0.653133 | 6.2:-23127680 | None:intergenic |
TTCCCACGTCCATCATGTGG+CGG | 0.653553 | 6.2:+23126196 | MS.gene65244:CDS |
GATCTTCTTCTGAGGCGACG+AGG | 0.657464 | 6.2:-23126162 | None:intergenic |
GCACTGTAACCAAGAAATGT+TGG | 0.663444 | 6.2:-23126953 | None:intergenic |
GAAAGACCTCTAGCAAAACC+AGG | 0.669110 | 6.2:-23127160 | None:intergenic |
GAGCATCACTCCAAATCCTG+AGG | 0.669573 | 6.2:-23126891 | None:intergenic |
TCAGATCTGAAGGAGTCTCA+GGG | 0.672635 | 6.2:+23127203 | MS.gene65244:CDS |
AATGATTTCAGGTTGTACAA+GGG | 0.688012 | 6.2:+23127650 | MS.gene65244:intron |
ACTCTAACCGGAGCTCAATG+GGG | 0.705197 | 6.2:+23128575 | MS.gene65244:CDS |
CTTGGTGTGAGTGTTGTCGG+TGG | 0.705258 | 6.2:+23128041 | MS.gene65244:CDS |
TTATGGGGTATGTGTACACG+CGG | 0.708012 | 6.2:+23128524 | MS.gene65244:CDS |
CCAACCATAAGAATTCGAAG+AGG | 0.749924 | 6.2:-23128551 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ACTTTGTTAATAATTTTGTA+TGG | + | chr6.2:23127398-23127417 | MS.gene65244:intron | 15.0% |
!!! | ATTACTAACATTTTTTATGT+AGG | - | chr6.2:23128248-23128267 | None:intergenic | 15.0% |
!!! | TGAATTTGTTTAGATTATTA+CGG | + | chr6.2:23128699-23128718 | MS.gene65244:intron | 15.0% |
!! | AATAACGAAAGACATAATTT+AGG | + | chr6.2:23127430-23127449 | MS.gene65244:intron | 20.0% |
!! | ATAACGAAAGACATAATTTA+GGG | + | chr6.2:23127431-23127450 | MS.gene65244:intron | 20.0% |
!! | CATGCTTTATCAATTAATAT+GGG | + | chr6.2:23126804-23126823 | MS.gene65244:intron | 20.0% |
!! | CTAAACAAATTCAAAAAGTT+GGG | - | chr6.2:23128692-23128711 | None:intergenic | 20.0% |
!! | TCTAAACAAATTCAAAAAGT+TGG | - | chr6.2:23128693-23128712 | None:intergenic | 20.0% |
!!! | AAAATTGTTTTTCCTTTATC+AGG | + | chr6.2:23128727-23128746 | MS.gene65244:intron | 20.0% |
!!! | CATGACTTTTACATTATTTT+AGG | + | chr6.2:23126435-23126454 | MS.gene65244:intron | 20.0% |
!!! | GTTTATGAACTTTTATACAT+TGG | + | chr6.2:23127519-23127538 | MS.gene65244:intron | 20.0% |
!!! | TTATATTTTGTAGCATATTC+TGG | - | chr6.2:23127043-23127062 | None:intergenic | 20.0% |
! | ATCAAAATGCCAAAATTGTT+AGG | - | chr6.2:23127357-23127376 | None:intergenic | 25.0% |
! | ATCATTGTACATTTCATCAA+AGG | - | chr6.2:23127636-23127655 | None:intergenic | 25.0% |
! | ATGAAAAATCTTCAATGCAA+AGG | - | chr6.2:23126418-23126437 | None:intergenic | 25.0% |
! | ATGAAATGTACAATGATTTC+AGG | + | chr6.2:23127639-23127658 | MS.gene65244:intron | 25.0% |
! | ATGTCTTTCGTTATTCAATT+TGG | - | chr6.2:23127425-23127444 | None:intergenic | 25.0% |
! | CTGCAACAAAAAAACATTAT+AGG | - | chr6.2:23127923-23127942 | None:intergenic | 25.0% |
! | CTTTATCAATTAATATGGGA+CGG | + | chr6.2:23126808-23126827 | MS.gene65244:intron | 25.0% |
! | GCATGCTTTATCAATTAATA+TGG | + | chr6.2:23126803-23126822 | MS.gene65244:intron | 25.0% |
! | GTCAATAACAATGATGAAAT+AGG | - | chr6.2:23128469-23128488 | None:intergenic | 25.0% |
! | GTTATATATCTAAGAAAGAG+CGG | - | chr6.2:23128212-23128231 | None:intergenic | 25.0% |
! | TGAAAAATCTTCAATGCAAA+GGG | - | chr6.2:23126417-23126436 | None:intergenic | 25.0% |
! | TTAGGGACTAAAATAAGAAA+GGG | - | chr6.2:23128185-23128204 | None:intergenic | 25.0% |
! | TTAGTTTATTGTTCACATAG+TGG | - | chr6.2:23127894-23127913 | None:intergenic | 25.0% |
! | TTTAGGGACTAAAATAAGAA+AGG | - | chr6.2:23128186-23128205 | None:intergenic | 25.0% |
!! | ACATGTACAATTTTAAGCAA+TGG | - | chr6.2:23127588-23127607 | None:intergenic | 25.0% |
!! | TACATAAATGTGTCTTTTGT+TGG | - | chr6.2:23127498-23127517 | None:intergenic | 25.0% |
!!! | AACATTTTTTATGTAGGAGT+AGG | - | chr6.2:23128242-23128261 | None:intergenic | 25.0% |
!!! | TACTACTTCAGTAGATTTTT+TGG | + | chr6.2:23127246-23127265 | MS.gene65244:intron | 25.0% |
!!! | TCTAGTTCTGATATATTGAT+TGG | + | chr6.2:23128661-23128680 | MS.gene65244:intron | 25.0% |
!!! | TGTATTTTATTTAGTATCGC+TGG | + | chr6.2:23128360-23128379 | MS.gene65244:intron | 25.0% |
!!! | TTGTTGGTAATTTTGATACT+CGG | - | chr6.2:23127482-23127501 | None:intergenic | 25.0% |
AATAAGTGTGGAAACTTACA+TGG | - | chr6.2:23127704-23127723 | None:intergenic | 30.0% | |
CATAGATTCCACTTTCAATT+CGG | - | chr6.2:23128342-23128361 | None:intergenic | 30.0% | |
CTGCTAAGTATAAATAAGTG+TGG | - | chr6.2:23127716-23127735 | None:intergenic | 30.0% | |
TGTTGCTCATTCTAGATATT+AGG | + | chr6.2:23127605-23127624 | MS.gene65244:intron | 30.0% | |
TTACATTTGACAAGATCAAG+AGG | - | chr6.2:23126359-23126378 | None:intergenic | 30.0% | |
TTGACTATACTTTGTAATGC+AGG | + | chr6.2:23128484-23128503 | MS.gene65244:intron | 30.0% | |
TTGTTGTGGATTTACTCATA+TGG | + | chr6.2:23126325-23126344 | MS.gene65244:CDS | 30.0% | |
TTTATAGAATTGGATCGAAC+TGG | - | chr6.2:23127820-23127839 | None:intergenic | 30.0% | |
! | AGTCTTGTCAAACAAGAAAA+GGG | + | chr6.2:23128311-23128330 | MS.gene65244:intron | 30.0% |
! | TACTGATTATCTTATACTCG+AGG | + | chr6.2:23128443-23128462 | MS.gene65244:intron | 30.0% |
!! | AATGATTTCAGGTTGTACAA+GGG | + | chr6.2:23127650-23127669 | MS.gene65244:intron | 30.0% |
!!! | TTTTTGGTTGATAGACGAAA+TGG | + | chr6.2:23127262-23127281 | MS.gene65244:intron | 30.0% |
AAAGAGACAAGATTATCTGC+AGG | - | chr6.2:23128104-23128123 | None:intergenic | 35.0% | |
AAATGCTCTTGTACTTAGCA+GGG | - | chr6.2:23126871-23126890 | None:intergenic | 35.0% | |
AAGTCCTATTCAGATGTTGT+TGG | + | chr6.2:23127016-23127035 | MS.gene65244:CDS | 35.0% | |
ACAACAAATACTTCCACCAA+CGG | - | chr6.2:23126312-23126331 | None:intergenic | 35.0% | |
ATCAATTAATATGGGACGGA+GGG | + | chr6.2:23126812-23126831 | MS.gene65244:intron | 35.0% | |
CAACCATAAGAATTCGAAGA+GGG | - | chr6.2:23128553-23128572 | None:intergenic | 35.0% | |
CACAACTGCACATAATATAC+CGG | - | chr6.2:23128075-23128094 | None:intergenic | 35.0% | |
CTAACCTTAATTGCCTCAAA+TGG | - | chr6.2:23127127-23127146 | None:intergenic | 35.0% | |
CTATAAAACCGACAACCAAT+CGG | + | chr6.2:23127833-23127852 | MS.gene65244:intron | 35.0% | |
GATGCATTCAAAGTTTCTGT+GGG | + | chr6.2:23128605-23128624 | MS.gene65244:CDS | 35.0% | |
GGAGAAGGAATCATAAACTT+AGG | - | chr6.2:23126230-23126249 | None:intergenic | 35.0% | |
TAAGAAAGAGCGGTAGTTTA+GGG | - | chr6.2:23128202-23128221 | None:intergenic | 35.0% | |
TATCAATTAATATGGGACGG+AGG | + | chr6.2:23126811-23126830 | MS.gene65244:intron | 35.0% | |
TCTTGTCAAATGTAACATGC+AGG | + | chr6.2:23126364-23126383 | MS.gene65244:CDS | 35.0% | |
TGATGCATTCAAAGTTTCTG+TGG | + | chr6.2:23128604-23128623 | MS.gene65244:CDS | 35.0% | |
TGTGAAGAAGTTGGGATTAT+GGG | + | chr6.2:23128508-23128527 | MS.gene65244:CDS | 35.0% | |
! | AAACCACAGTTTGCTTAATC+AGG | - | chr6.2:23127794-23127813 | None:intergenic | 35.0% |
! | CACAAGGTGCTTTCAAATAT+GGG | + | chr6.2:23126975-23126994 | MS.gene65244:CDS | 35.0% |
! | CAGTCTTGTCAAACAAGAAA+AGG | + | chr6.2:23128310-23128329 | MS.gene65244:intron | 35.0% |
! | GTTTTTGTGCATTCTTCCTT+TGG | - | chr6.2:23128014-23128033 | None:intergenic | 35.0% |
! | TTGTCCATTTGAGGCAATTA+AGG | + | chr6.2:23127120-23127139 | MS.gene65244:CDS | 35.0% |
!! | CAATGATTTCAGGTTGTACA+AGG | + | chr6.2:23127649-23127668 | MS.gene65244:intron | 35.0% |
!! | TAGAGGATTTTTCAGAGGAT+GGG | + | chr6.2:23126928-23126947 | MS.gene65244:CDS | 35.0% |
!! | TTAATCAGGTTCGTTTTAGC+AGG | - | chr6.2:23127780-23127799 | None:intergenic | 35.0% |
!! | TTAGAGGATTTTTCAGAGGA+TGG | + | chr6.2:23126927-23126946 | MS.gene65244:CDS | 35.0% |
!!! | GGTTGTCGGTTTTATAGAAT+TGG | - | chr6.2:23127830-23127849 | None:intergenic | 35.0% |
AAACTCACACACACAAGTAG+AGG | + | chr6.2:23127298-23127317 | MS.gene65244:intron | 40.0% | |
AACACTCACACCAAGTTGTA+GGG | - | chr6.2:23128036-23128055 | None:intergenic | 40.0% | |
ACACACACAAGTAGAGGAAT+CGG | + | chr6.2:23127304-23127323 | MS.gene65244:intron | 40.0% | |
ATAAATTCCCCATTGAGCTC+CGG | - | chr6.2:23128585-23128604 | None:intergenic | 40.0% | |
CCAACCATAAGAATTCGAAG+AGG | - | chr6.2:23128554-23128573 | None:intergenic | 40.0% | |
CCTCTTCGAATTCTTATGGT+TGG | + | chr6.2:23128551-23128570 | MS.gene65244:CDS | 40.0% | |
CCTTCAGATCTGAGCAATTT+GGG | - | chr6.2:23127196-23127215 | None:intergenic | 40.0% | |
CTAAGAAAGAGCGGTAGTTT+AGG | - | chr6.2:23128203-23128222 | None:intergenic | 40.0% | |
CTGTGAAGAAGTTGGGATTA+TGG | + | chr6.2:23128507-23128526 | MS.gene65244:CDS | 40.0% | |
CTTATGGTTGGAACTCTAAC+CGG | + | chr6.2:23128563-23128582 | MS.gene65244:CDS | 40.0% | |
GAAATGCTCTTGTACTTAGC+AGG | - | chr6.2:23126872-23126891 | None:intergenic | 40.0% | |
GAACCTGATTAAGCAAACTG+TGG | + | chr6.2:23127788-23127807 | MS.gene65244:intron | 40.0% | |
GCACTGTAACCAAGAAATGT+TGG | - | chr6.2:23126956-23126975 | None:intergenic | 40.0% | |
GGGACTAAAATAAGAAAGGG+CGG | - | chr6.2:23128182-23128201 | None:intergenic | 40.0% | |
GTCAAATGTAACATGCAGGT+TGG | + | chr6.2:23126368-23126387 | MS.gene65244:intron | 40.0% | |
GTGAAGAAGTTGGGATTATG+GGG | + | chr6.2:23128509-23128528 | MS.gene65244:CDS | 40.0% | |
GTTAGAGTTCAAACTCAACC+TGG | + | chr6.2:23127142-23127161 | MS.gene65244:CDS | 40.0% | |
TCCTTCAGATCTGAGCAATT+TGG | - | chr6.2:23127197-23127216 | None:intergenic | 40.0% | |
TCTCCCTCTTCGAATTCTTA+TGG | + | chr6.2:23128547-23128566 | MS.gene65244:CDS | 40.0% | |
TCTTCCATGATCTTCTTCTG+AGG | - | chr6.2:23126173-23126192 | None:intergenic | 40.0% | |
TCTTTCCTCAACAGTTCCAA+AGG | + | chr6.2:23128119-23128138 | MS.gene65244:CDS | 40.0% | |
TGCACAAAAACCCTACAACT+TGG | + | chr6.2:23128023-23128042 | MS.gene65244:CDS | 40.0% | |
TGGACCAACAACATCTGAAT+AGG | - | chr6.2:23127023-23127042 | None:intergenic | 40.0% | |
TGTTGCACTTTGTCCATTTG+AGG | + | chr6.2:23127111-23127130 | MS.gene65244:CDS | 40.0% | |
TTGAGCGTACTCTCGATTAT+TGG | + | chr6.2:23128274-23128293 | MS.gene65244:intron | 40.0% | |
TTTCTTGGTTACAGTGCACA+AGG | + | chr6.2:23126959-23126978 | MS.gene65244:CDS | 40.0% | |
TTTGCTAGAGGTCTTTCTGA+TGG | + | chr6.2:23127166-23127185 | MS.gene65244:CDS | 40.0% | |
! | AAGACATTAGTCTACCTTGC+TGG | + | chr6.2:23127061-23127080 | MS.gene65244:CDS | 40.0% |
! | AGCGTTTGGCCTAACAATTT+TGG | + | chr6.2:23127345-23127364 | MS.gene65244:intron | 40.0% |
! | GCACAAGGTGCTTTCAAATA+TGG | + | chr6.2:23126974-23126993 | MS.gene65244:CDS | 40.0% |
! | TGCATTCTTCCTTTGGTGTA+GGG | - | chr6.2:23128007-23128026 | None:intergenic | 40.0% |
!! | AAGAGCATTTCCTCAGGATT+TGG | + | chr6.2:23126881-23126900 | MS.gene65244:CDS | 40.0% |
!! | AAGTACAAGAGCATTTCCTC+AGG | + | chr6.2:23126875-23126894 | MS.gene65244:CDS | 40.0% |
!! | GCATTTTGATCAGTTGAGCT+AGG | + | chr6.2:23127367-23127386 | MS.gene65244:intron | 40.0% |
!! | GGAGTTAGAGGATTTTTCAG+AGG | + | chr6.2:23126923-23126942 | MS.gene65244:CDS | 40.0% |
!! | GTTGGTGGAAGTATTTGTTG+TGG | + | chr6.2:23126311-23126330 | MS.gene65244:CDS | 40.0% |
AACTCTAACCGGAGCTCAAT+GGG | + | chr6.2:23128574-23128593 | MS.gene65244:CDS | 45.0% | |
AATGCAGGCTGTGAAGAAGT+TGG | + | chr6.2:23128499-23128518 | MS.gene65244:intron | 45.0% | |
ACACACAAGTAGAGGAATCG+GGG | + | chr6.2:23127306-23127325 | MS.gene65244:intron | 45.0% | |
AGTGGAACAGTCCGTTCAAT+TGG | - | chr6.2:23127876-23127895 | None:intergenic | 45.0% | |
ATGCAGGCTGTGAAGAAGTT+GGG | + | chr6.2:23128500-23128519 | MS.gene65244:intron | 45.0% | |
ATTCCTTCTCCCAGATTCAC+TGG | - | chr6.2:23126252-23126271 | None:intergenic | 45.0% | |
ATTCCTTCTCCCAGTGAATC+TGG | + | chr6.2:23126239-23126258 | MS.gene65244:CDS | 45.0% | |
CAACACTCACACCAAGTTGT+AGG | - | chr6.2:23128037-23128056 | None:intergenic | 45.0% | |
CACACACAAGTAGAGGAATC+GGG | + | chr6.2:23127305-23127324 | MS.gene65244:intron | 45.0% | |
CCCAAATTGCTCAGATCTGA+AGG | + | chr6.2:23127193-23127212 | MS.gene65244:CDS | 45.0% | |
CTCAAGGAACAAGGAGTTAG+AGG | + | chr6.2:23126911-23126930 | MS.gene65244:CDS | 45.0% | |
CTTGTTTGACAAGACTGACG+TGG | - | chr6.2:23128307-23128326 | None:intergenic | 45.0% | |
GAAAGACCTCTAGCAAAACC+AGG | - | chr6.2:23127163-23127182 | None:intergenic | 45.0% | |
GGCTCGTTCAACCAATTGAA+CGG | + | chr6.2:23127862-23127881 | MS.gene65244:intron | 45.0% | |
GTTGTCGGTGGATATTTAGC+CGG | + | chr6.2:23128053-23128072 | MS.gene65244:CDS | 45.0% | |
TAAGAAGCAGAAATCGGAGC+AGG | - | chr6.2:23128774-23128793 | None:intergenic | 45.0% | |
TCAGATCTGAAGGAGTCTCA+GGG | + | chr6.2:23127203-23127222 | MS.gene65244:CDS | 45.0% | |
TTATGGGGTATGTGTACACG+CGG | + | chr6.2:23128524-23128543 | MS.gene65244:CDS | 45.0% | |
TTCCTTCTCCCAGATTCACT+GGG | - | chr6.2:23126251-23126270 | None:intergenic | 45.0% | |
TTCCTTCTCCCAGTGAATCT+GGG | + | chr6.2:23126240-23126259 | MS.gene65244:CDS | 45.0% | |
! | AGGATTTGGAGTGATGCTCA+AGG | + | chr6.2:23126895-23126914 | MS.gene65244:CDS | 45.0% |
! | GTGCATTCTTCCTTTGGTGT+AGG | - | chr6.2:23128008-23128027 | None:intergenic | 45.0% |
! | TTCTTCCTTTGGTGTAGGGA+TGG | - | chr6.2:23128003-23128022 | None:intergenic | 45.0% |
!! | CAACTTGGTGTGAGTGTTGT+CGG | + | chr6.2:23128038-23128057 | MS.gene65244:CDS | 45.0% |
!! | TTGCTCCTTTGGAACTGTTG+AGG | - | chr6.2:23128127-23128146 | None:intergenic | 45.0% |
!!! | ACTCAACCTGGTTTTGCTAG+AGG | + | chr6.2:23127154-23127173 | MS.gene65244:CDS | 45.0% |
ACTCTAACCGGAGCTCAATG+GGG | + | chr6.2:23128575-23128594 | MS.gene65244:CDS | 50.0% | |
ATCAGCAGCAGTTGCTCCTT+TGG | - | chr6.2:23128138-23128157 | None:intergenic | 50.0% | |
CTCAGATCTGAAGGAGTCTC+AGG | + | chr6.2:23127202-23127221 | MS.gene65244:CDS | 50.0% | |
GAACTCTAACCGGAGCTCAA+TGG | + | chr6.2:23128573-23128592 | MS.gene65244:CDS | 50.0% | |
GACGAAATGGCAAGAGCTGT+TGG | + | chr6.2:23127275-23127294 | MS.gene65244:intron | 50.0% | |
GAGCATCACTCCAAATCCTG+AGG | - | chr6.2:23126894-23126913 | None:intergenic | 50.0% | |
GCAGTTGAGTAGAGGAAGCT+TGG | - | chr6.2:23126143-23126162 | None:intergenic | 50.0% | |
GGAACTTGTCTTCCCCAAAG+AGG | - | chr6.2:23127683-23127702 | None:intergenic | 50.0% | |
GGAGTGATGCTCAAGGAACA+AGG | + | chr6.2:23126902-23126921 | MS.gene65244:CDS | 50.0% | |
GGATGGGCACCAACATTTCT+TGG | + | chr6.2:23126944-23126963 | MS.gene65244:CDS | 50.0% | |
GGGTCTCACCGAATTGAAAG+TGG | + | chr6.2:23128331-23128350 | MS.gene65244:intron | 50.0% | |
GTCGCCTCAGAAGAAGATCA+TGG | + | chr6.2:23126166-23126185 | MS.gene65244:CDS | 50.0% | |
GTTAGGCCAAACGCTGTGAT+CGG | - | chr6.2:23127340-23127359 | None:intergenic | 50.0% | |
TACTATCTTGCTTGCGCCGT+TGG | + | chr6.2:23126293-23126312 | MS.gene65244:CDS | 50.0% | |
TCCTTTATCAGGCCAACCAC+TGG | + | chr6.2:23128738-23128757 | MS.gene65244:intron | 50.0% | |
TTAGGCCAAACGCTGTGATC+GGG | - | chr6.2:23127339-23127358 | None:intergenic | 50.0% | |
TTTATCAGGCCAACCACTGG+TGG | + | chr6.2:23128741-23128760 | MS.gene65244:intron | 50.0% | |
!! | AAGGGCGTTGTACCTCTTTG+GGG | + | chr6.2:23127668-23127687 | MS.gene65244:CDS | 50.0% |
!! | ACAAGGGCGTTGTACCTCTT+TGG | + | chr6.2:23127666-23127685 | MS.gene65244:CDS | 50.0% |
!! | ACCAGTGGTTGGCCTGATAA+AGG | - | chr6.2:23128742-23128761 | None:intergenic | 50.0% |
!! | CAAGGGCGTTGTACCTCTTT+GGG | + | chr6.2:23127667-23127686 | MS.gene65244:CDS | 50.0% |
CAAACCCCGATCACAGCGTT+TGG | + | chr6.2:23127331-23127350 | MS.gene65244:intron | 55.0% | |
CAGCAGAAGCTGATCCAGCA+AGG | - | chr6.2:23127078-23127097 | None:intergenic | 55.0% | |
CGTTTCCCACGTCCATCATG+TGG | + | chr6.2:23126193-23126212 | MS.gene65244:CDS | 55.0% | |
CTCCCAGATTCACTGGGAGA+AGG | - | chr6.2:23126245-23126264 | None:intergenic | 55.0% | |
CTCCCAGTGAATCTGGGAGA+AGG | + | chr6.2:23126246-23126265 | MS.gene65244:CDS | 55.0% | |
GCATGCCATCCCTACACCAA+AGG | + | chr6.2:23127995-23128014 | MS.gene65244:CDS | 55.0% | |
TAGGCCAAACGCTGTGATCG+GGG | - | chr6.2:23127338-23127357 | None:intergenic | 55.0% | |
TATCTTGCTTGCGCCGTTGG+TGG | + | chr6.2:23126296-23126315 | MS.gene65244:CDS | 55.0% | |
TGCTGGATCAGCTTCTGCTG+AGG | + | chr6.2:23127078-23127097 | MS.gene65244:CDS | 55.0% | |
TTCCCACGTCCATCATGTGG+CGG | + | chr6.2:23126196-23126215 | MS.gene65244:CDS | 55.0% | |
! | CCAGTCTGCCGATTGGTTGT+CGG | - | chr6.2:23127844-23127863 | None:intergenic | 55.0% |
! | CTTGGTGTGAGTGTTGTCGG+TGG | + | chr6.2:23128041-23128060 | MS.gene65244:CDS | 55.0% |
!! | GATCTTCTTCTGAGGCGACG+AGG | - | chr6.2:23126165-23126184 | None:intergenic | 55.0% |
AGCAGGAGCAACACCACCAG+TGG | - | chr6.2:23128757-23128776 | None:intergenic | 60.0% | |
CCGACAACCAATCGGCAGAC+TGG | + | chr6.2:23127841-23127860 | MS.gene65244:intron | 60.0% | |
GAACGAGCCAGTCTGCCGAT+TGG | - | chr6.2:23127851-23127870 | None:intergenic | 60.0% | |
GAGATTCCGCCGCCACATGA+TGG | - | chr6.2:23126208-23126227 | None:intergenic | 60.0% | |
GCGACGAGGCAGTTGAGTAG+AGG | - | chr6.2:23126151-23126170 | None:intergenic | 60.0% | |
GGAGCAACACCACCAGTGGT+TGG | - | chr6.2:23128753-23128772 | None:intergenic | 60.0% | |
CCACGTCCATCATGTGGCGG+CGG | + | chr6.2:23126199-23126218 | MS.gene65244:CDS | 65.0% | |
!! | CGCCGCCACATGATGGACGT+GGG | - | chr6.2:23126201-23126220 | None:intergenic | 65.0% |
!! | CCGCCGCCACATGATGGACG+TGG | - | chr6.2:23126202-23126221 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 23126122 | 23128794 | 23126122 | ID=MS.gene65244 |
chr6.2 | mRNA | 23126122 | 23128794 | 23126122 | ID=MS.gene65244.t1;Parent=MS.gene65244 |
chr6.2 | exon | 23126122 | 23126385 | 23126122 | ID=MS.gene65244.t1.exon1;Parent=MS.gene65244.t1 |
chr6.2 | CDS | 23126122 | 23126385 | 23126122 | ID=cds.MS.gene65244.t1;Parent=MS.gene65244.t1 |
chr6.2 | exon | 23126863 | 23127224 | 23126863 | ID=MS.gene65244.t1.exon2;Parent=MS.gene65244.t1 |
chr6.2 | CDS | 23126863 | 23127224 | 23126863 | ID=cds.MS.gene65244.t1;Parent=MS.gene65244.t1 |
chr6.2 | exon | 23127661 | 23127704 | 23127661 | ID=MS.gene65244.t1.exon3;Parent=MS.gene65244.t1 |
chr6.2 | CDS | 23127661 | 23127704 | 23127661 | ID=cds.MS.gene65244.t1;Parent=MS.gene65244.t1 |
chr6.2 | exon | 23127943 | 23128157 | 23127943 | ID=MS.gene65244.t1.exon4;Parent=MS.gene65244.t1 |
chr6.2 | CDS | 23127943 | 23128157 | 23127943 | ID=cds.MS.gene65244.t1;Parent=MS.gene65244.t1 |
chr6.2 | exon | 23128506 | 23128630 | 23128506 | ID=MS.gene65244.t1.exon5;Parent=MS.gene65244.t1 |
chr6.2 | CDS | 23128506 | 23128630 | 23128506 | ID=cds.MS.gene65244.t1;Parent=MS.gene65244.t1 |
chr6.2 | exon | 23128749 | 23128794 | 23128749 | ID=MS.gene65244.t1.exon6;Parent=MS.gene65244.t1 |
chr6.2 | CDS | 23128749 | 23128794 | 23128749 | ID=cds.MS.gene65244.t1;Parent=MS.gene65244.t1 |
Gene Sequence |
Protein sequence |