AlfalfaGEDB | MS.gene05956

M. sativa cultivar XinJiangDaYe / MS.gene05956

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05956.t1	XP_013447314.1	88.7	106	12	0	12	117	11	116	3.20E-42	181

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05956.t1	I3S9W1	88.7	106	12	0	12	117	11	116	2.3e-42	181.0

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04920	MS.gene05956	0.807726	4.39E-50	-1.69E-46
MS.gene049283	MS.gene05956	0.829361	5.37E-55	-1.69E-46
MS.gene049983	MS.gene05956	0.803319	3.69E-49	-1.69E-46
MS.gene051699	MS.gene05956	0.805529	1.28E-49	-1.69E-46
MS.gene053963	MS.gene05956	0.80793	3.97E-50	-1.69E-46
MS.gene054892	MS.gene05956	0.826737	2.30E-54	-1.69E-46
MS.gene054893	MS.gene05956	0.839837	1.25E-57	-1.69E-46
MS.gene055150	MS.gene05956	0.827372	1.62E-54	-1.69E-46
MS.gene05624	MS.gene05956	0.808166	3.54E-50	-1.69E-46
MS.gene057622	MS.gene05956	0.801459	8.91E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05956.t1	MTR_8g102755	87.037	108	14	0	12	119	11	118	3.95e-63	191

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 21 sgRNAs with CRISPR-Local

Find 29 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGACAGAAACAAAGAAATT+TGG	0.303541	4.4:-3521964	MS.gene05956:CDS
ACAACTTGGAGTTGAAGAGA+AGG	0.600247	4.4:-3521782	MS.gene05956:CDS
AGAATGGAGTATCAATCTCT+TGG	0.471194	4.4:-3522080	MS.gene05956:CDS
ATAAATTGTTTGGACGGAAA+GGG	0.528425	4.4:-3521909	MS.gene05956:CDS
ATCAAGCTTGTTGCTGGATG+TGG	0.461106	4.4:-3521934	MS.gene05956:CDS
ATCTATTACACCATTATTTG+CGG	0.399079	4.4:+3521725	None:intergenic
ATTCAAATCAAGCTTGTTGC+TGG	0.398775	4.4:-3521940	MS.gene05956:CDS
ATTGAAGATGATGCTACTTT+TGG	0.318948	4.4:-3522019	MS.gene05956:CDS
CAAAAGGGTCTACGTAAAAC+AGG	0.434608	4.4:-3522043	MS.gene05956:CDS
CAACTTGGAGTTGAAGAGAA+GGG	0.601023	4.4:-3521781	MS.gene05956:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAGATGCAGAAAAATG+AGG	-	chr4.4:3522061-3522080	MS.gene05956:CDS	30.0%
ATAAATTGTTTGGACGGAAA+GGG	-	chr4.4:3521910-3521929	MS.gene05956:CDS	30.0%
CATAAATTGTTTGGACGGAA+AGG	-	chr4.4:3521909-3521928	MS.gene05956:CDS	35.0%
GGATGTGGACATAAATTGTT+TGG	-	chr4.4:3521900-3521919	MS.gene05956:CDS	35.0%
GTGGACATAAATTGTTTGGA+CGG	-	chr4.4:3521904-3521923	MS.gene05956:CDS	35.0%
ACAACTTGGAGTTGAAGAGA+AGG	-	chr4.4:3522037-3522056	MS.gene05956:CDS	40.0%
CAAAAGGGTCTACGTAAAAC+AGG	-	chr4.4:3521776-3521795	MS.gene05956:CDS	40.0%
CAACTTGGAGTTGAAGAGAA+GGG	-	chr4.4:3522038-3522057	MS.gene05956:CDS	40.0%
CAAGATGCAGAAAAATGAGG+TGG	-	chr4.4:3522064-3522083	MS.gene05956:CDS	40.0%
GTCAGGAAAAGCTCTTTCAT+CGG	+	chr4.4:3521949-3521968	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	3521738	3522103	3521738	ID=MS.gene05956
chr4.4	mRNA	3521738	3522103	3521738	ID=MS.gene05956.t1;Parent=MS.gene05956
chr4.4	exon	3521738	3522103	3521738	ID=MS.gene05956.t1.exon1;Parent=MS.gene05956.t1
chr4.4	CDS	3521738	3522103	3521738	ID=cds.MS.gene05956.t1;Parent=MS.gene05956.t1

Gene Sequence	>MS.gene05956 AAGAATGGAGTATCAATCTCTTGGAAGGTACCAAAAACCAAAAGGGTCTACGTAAAACAGGTATTGAAGATGATGCTACTTTTGGCTGTTTGTGCCTGGTTGTTATATCAAATCAAGAAGACAGAAACAAAGAAATTTGGTATTCAAATCAAGCTTGTTGCTGGATGTGGACATAAATTGTTTGGACGGAAAGGGATGCTATCACGTCCCGATGAAAGAGCTTTTCCTGACTCAGGAAAGGTAGATTCTGTTGGAGAAGTAACAAATGAGTTTAAAAGTAATGACAAAGAAAAAGAAGTACAACTTGGAGTTGAAGAGAAGGGAAACAAGATGCAGAAAAATGAGGTGGAGAGGTGCCGCAAATAA
Protein sequence	>MS.gene05956.t1 KNGVSISWKVPKTKRVYVKQVLKMMLLLAVCAWLLYQIKKTETKKFGIQIKLVAGCGHKLFGRKGMLSRPDERAFPDSGKVDSVGEVTNEFKSNDKEKEVQLGVEEKGNKMQKNEVERCRK