Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66349.t1 | XP_003620871.1 | 97.1 | 238 | 7 | 0 | 1 | 238 | 1 | 238 | 2.80E-130 | 474.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66349.t1 | Q9C5D7 | 62.8 | 223 | 83 | 0 | 15 | 237 | 9 | 231 | 7.8e-81 | 301.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66349.t1 | G7KJ71 | 97.1 | 238 | 7 | 0 | 1 | 238 | 1 | 238 | 2.0e-130 | 474.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene66349 | MS.gene28756 | PPI |
| MS.gene66349 | MS.gene059423 | PPI |
| MS.gene66349 | MS.gene053539 | PPI |
| MS.gene66349 | MS.gene053535 | PPI |
| MS.gene66349 | MS.gene35069 | PPI |
| MS.gene66349 | MS.gene26463 | PPI |
| MS.gene028389 | MS.gene66349 | PPI |
| MS.gene66349 | MS.gene047856 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66349.t1 | MTR_6g091680 | 97.059 | 238 | 7 | 0 | 1 | 238 | 1 | 238 | 4.82e-171 | 470 |
| MS.gene66349.t1 | MTR_8g021225 | 70.404 | 223 | 65 | 1 | 15 | 236 | 11 | 233 | 8.18e-114 | 325 |
| MS.gene66349.t1 | MTR_8g101900 | 71.429 | 231 | 66 | 0 | 8 | 238 | 5 | 235 | 3.31e-109 | 314 |
| MS.gene66349.t1 | MTR_4g085590 | 55.804 | 224 | 98 | 1 | 15 | 237 | 23 | 246 | 1.16e-90 | 267 |
| MS.gene66349.t1 | MTR_4g094815 | 57.080 | 226 | 94 | 2 | 15 | 238 | 24 | 248 | 5.49e-90 | 266 |
| MS.gene66349.t1 | MTR_4g094925 | 55.111 | 225 | 98 | 2 | 15 | 237 | 19 | 242 | 3.19e-86 | 256 |
| MS.gene66349.t1 | MTR_4g094898 | 56.637 | 226 | 95 | 2 | 14 | 237 | 23 | 247 | 3.13e-81 | 243 |
| MS.gene66349.t1 | MTR_4g094812 | 56.889 | 225 | 94 | 2 | 15 | 237 | 22 | 245 | 6.57e-81 | 243 |
| MS.gene66349.t1 | MTR_4g094925 | 54.545 | 187 | 84 | 1 | 52 | 237 | 25 | 211 | 1.32e-72 | 220 |
| MS.gene66349.t1 | MTR_4g094368 | 49.784 | 231 | 106 | 5 | 8 | 235 | 4 | 227 | 1.76e-72 | 221 |
| MS.gene66349.t1 | MTR_4g094898 | 57.692 | 182 | 74 | 2 | 58 | 237 | 6 | 186 | 2.91e-65 | 201 |
| MS.gene66349.t1 | MTR_2g070410 | 37.037 | 216 | 127 | 3 | 21 | 236 | 91 | 297 | 1.53e-46 | 156 |
| MS.gene66349.t1 | MTR_2g070410 | 38.547 | 179 | 106 | 2 | 21 | 199 | 91 | 265 | 2.48e-36 | 129 |
| MS.gene66349.t1 | MTR_6g091635 | 94.118 | 34 | 2 | 0 | 198 | 231 | 1 | 34 | 2.65e-16 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66349.t1 | AT4G26220 | 62.780 | 223 | 83 | 0 | 15 | 237 | 9 | 231 | 7.10e-104 | 300 |
| MS.gene66349.t1 | AT4G34050 | 55.111 | 225 | 100 | 1 | 15 | 238 | 35 | 259 | 1.42e-91 | 270 |
| MS.gene66349.t1 | AT4G34050 | 55.111 | 225 | 100 | 1 | 15 | 238 | 62 | 286 | 1.83e-91 | 271 |
| MS.gene66349.t1 | AT1G67980 | 54.425 | 226 | 96 | 3 | 15 | 237 | 10 | 231 | 2.31e-84 | 251 |
| MS.gene66349.t1 | AT1G24735 | 53.744 | 227 | 98 | 4 | 15 | 237 | 16 | 239 | 8.57e-81 | 242 |
| MS.gene66349.t1 | AT1G67990 | 50.442 | 226 | 106 | 3 | 15 | 237 | 10 | 232 | 1.89e-74 | 226 |
| MS.gene66349.t1 | AT1G24735 | 44.765 | 277 | 97 | 4 | 15 | 237 | 16 | 290 | 2.61e-74 | 227 |
| MS.gene66349.t1 | AT1G24735 | 56.983 | 179 | 74 | 2 | 60 | 237 | 18 | 194 | 1.63e-70 | 214 |
| MS.gene66349.t1 | AT1G67980 | 52.663 | 169 | 69 | 4 | 73 | 237 | 2 | 163 | 6.54e-53 | 169 |
| MS.gene66349.t1 | AT3G62000 | 37.021 | 235 | 136 | 5 | 4 | 236 | 53 | 277 | 1.03e-47 | 159 |
| MS.gene66349.t1 | AT3G61990 | 37.179 | 234 | 134 | 5 | 4 | 236 | 68 | 289 | 1.54e-45 | 154 |
| MS.gene66349.t1 | AT3G62000 | 36.444 | 225 | 131 | 5 | 4 | 226 | 53 | 267 | 1.20e-40 | 142 |
| MS.gene66349.t1 | AT4G34050 | 50.806 | 124 | 60 | 1 | 116 | 238 | 25 | 148 | 2.04e-39 | 134 |
Find 39 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTCCAGCTCTACCAATTT+TGG | 0.186253 | 6.4:-63086308 | MS.gene66349:CDS |
| GACAGGAAAACTTATGAAAT+TGG | 0.203207 | 6.4:-63086382 | MS.gene66349:CDS |
| TCTAGCAGTTTATCCAAAAT+TGG | 0.261995 | 6.4:+63086295 | None:intergenic |
| TCAAATGTTCCTTCATTTGT+AGG | 0.273170 | 6.4:+63085504 | None:intergenic |
| AATGGTATTGCAGTATATAT+TGG | 0.318254 | 6.4:-63087131 | MS.gene66349:intron |
| TTGAGAGGCTCAGGCTCTCT+AGG | 0.392368 | 6.4:+63087094 | None:intergenic |
| CTCAGCTCTTTGAGAGGCTC+AGG | 0.393899 | 6.4:+63087085 | None:intergenic |
| TGCACTGGAACATTCTCTTC+AGG | 0.394174 | 6.4:+63085357 | None:intergenic |
| GAATTTGCTCTCACTTCTGT+TGG | 0.419050 | 6.4:-63085270 | MS.gene66349:CDS |
| CCATGAAAGACTGATAAAAC+TGG | 0.437778 | 6.4:-63085439 | MS.gene66349:CDS |
| GCTCTCACTTCTGTTGGAGA+TGG | 0.460645 | 6.4:-63085264 | MS.gene66349:CDS |
| TTATCCAAAATTGGTAGAGC+TGG | 0.462919 | 6.4:+63086304 | None:intergenic |
| ATGCAAACCTTTCCATCGTC+GGG | 0.470357 | 6.4:+63086506 | None:intergenic |
| CTACCTGTCATAAGAAAGGC+TGG | 0.478364 | 6.4:-63086358 | MS.gene66349:CDS |
| CTGATAAAACTGGTCAAAGT+TGG | 0.482685 | 6.4:-63085429 | MS.gene66349:CDS |
| ATAGCAACTTTACCTGAGGC+TGG | 0.500969 | 6.4:-63086629 | MS.gene66349:CDS |
| ATGATGCAGCCTACAAATGA+AGG | 0.509526 | 6.4:-63085513 | MS.gene66349:intron |
| ACTCCAGCCTTTCTTATGAC+AGG | 0.521115 | 6.4:+63086355 | None:intergenic |
| TCCTCGCTCTGCAATATGAC+AGG | 0.524552 | 6.4:+63087249 | None:intergenic |
| ATAAAACTGGTCAAAGTTGG+TGG | 0.527329 | 6.4:-63085426 | MS.gene66349:CDS |
| TGGACTACCTGTCATAAGAA+AGG | 0.529586 | 6.4:-63086362 | MS.gene66349:CDS |
| CGGGAATGTTGAGTGCAGTA+AGG | 0.537602 | 6.4:+63086525 | None:intergenic |
| CTCTGTGGTCTAGAATGCAC+TGG | 0.539673 | 6.4:+63085342 | None:intergenic |
| GTGATTAGTTGACCAGCCTC+AGG | 0.545407 | 6.4:+63086617 | None:intergenic |
| GCATTCCTCAGCTCTTTGAG+AGG | 0.548288 | 6.4:+63087079 | None:intergenic |
| TTACAGCCATAGATATTGAC+AGG | 0.548694 | 6.4:-63086399 | MS.gene66349:CDS |
| TATGGGGTGGACGTGTTGCA+TGG | 0.558956 | 6.4:-63085380 | MS.gene66349:CDS |
| TATGCAAACCTTTCCATCGT+CGG | 0.561122 | 6.4:+63086505 | None:intergenic |
| TGAGAGGCTCAGGCTCTCTA+GGG | 0.570036 | 6.4:+63087095 | None:intergenic |
| CAACATTCCCGACGATGGAA+AGG | 0.570116 | 6.4:-63086513 | MS.gene66349:intron |
| TGTCATAAGAAAGGCTGGAG+TGG | 0.586841 | 6.4:-63086353 | MS.gene66349:CDS |
| TCAATTGCTGCTAGTCTCTG+TGG | 0.590797 | 6.4:+63085327 | None:intergenic |
| ATGCCACTGAGAATCATCCT+TGG | 0.600903 | 6.4:-63087060 | MS.gene66349:intron |
| TCCTGTCATATTGCAGAGCG+AGG | 0.609373 | 6.4:-63087250 | MS.gene66349:CDS |
| GCACTCAACATTCCCGACGA+TGG | 0.616697 | 6.4:-63086518 | MS.gene66349:CDS |
| TTTCATAGCAACTTTACCTG+AGG | 0.618675 | 6.4:-63086633 | MS.gene66349:CDS |
| CTGAGCCTCTCAAAGAGCTG+AGG | 0.634468 | 6.4:-63087084 | MS.gene66349:CDS |
| GCAGAGCGAGGACTTAACAA+AGG | 0.664516 | 6.4:-63087238 | MS.gene66349:intron |
| TTACCAAGGATGATTCTCAG+TGG | 0.746004 | 6.4:+63087057 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATATGACAACATTTTAT+GGG | - | chr6.4:63087124-63087143 | MS.gene66349:intron | 15.0% |
| !!! | TTATATATGACAACATTTTA+TGG | - | chr6.4:63087123-63087142 | MS.gene66349:intron | 15.0% |
| !!! | TTTAATTTCGTAAACTAAAT+TGG | - | chr6.4:63086942-63086961 | MS.gene66349:intron | 15.0% |
| !! | ACAATATCGAATTATATCTA+CGG | + | chr6.4:63086051-63086070 | None:intergenic | 20.0% |
| !! | CATAGTAAGAAGAAATAAAA+GGG | + | chr6.4:63085340-63085359 | None:intergenic | 20.0% |
| !! | CTTAAAATGGAAATAGATTT+AGG | + | chr6.4:63086463-63086482 | None:intergenic | 20.0% |
| !! | CTTCAAGATTATGATTTAAT+TGG | - | chr6.4:63085542-63085561 | MS.gene66349:intron | 20.0% |
| !!! | AATGATTTTTAATGTTACGT+AGG | + | chr6.4:63086913-63086932 | None:intergenic | 20.0% |
| !!! | AATTTTTTCATACATGTCAT+AGG | + | chr6.4:63086352-63086371 | None:intergenic | 20.0% |
| !!! | ATATATGACAACATTTTATG+GGG | - | chr6.4:63087125-63087144 | MS.gene66349:intron | 20.0% |
| !!! | ATTTTTTGACAATTTTTGTG+TGG | - | chr6.4:63086979-63086998 | MS.gene66349:intron | 20.0% |
| !!! | TATGTTATCAACAACTTTTA+GGG | + | chr6.4:63086520-63086539 | None:intergenic | 20.0% |
| !!! | TTCTCTTTTTATTATCTGTT+TGG | - | chr6.4:63086266-63086285 | MS.gene66349:intron | 20.0% |
| ! | AAAACGTTAGTATATTGTGA+TGG | - | chr6.4:63085836-63085855 | MS.gene66349:intron | 25.0% |
| ! | AATGGTATTGCAGTATATAT+TGG | - | chr6.4:63085390-63085409 | MS.gene66349:CDS | 25.0% |
| ! | AGAAGATAGAATAATTACCA+AGG | + | chr6.4:63085481-63085500 | None:intergenic | 25.0% |
| ! | CTAGAAATGTGAACTTAAAA+TGG | + | chr6.4:63086476-63086495 | None:intergenic | 25.0% |
| ! | GCATAGTAAGAAGAAATAAA+AGG | + | chr6.4:63085341-63085360 | None:intergenic | 25.0% |
| !! | GTATGTTATCAACAACTTTT+AGG | + | chr6.4:63086521-63086540 | None:intergenic | 25.0% |
| !!! | ATACATTTCTAGTAGATCTT+CGG | - | chr6.4:63086537-63086556 | MS.gene66349:CDS | 25.0% |
| !!! | CGTTTTAAAATTGAACAGAT+CGG | + | chr6.4:63085792-63085811 | None:intergenic | 25.0% |
| !!! | TTGGTTTTCATATTCATTCA+GGG | - | chr6.4:63085864-63085883 | MS.gene66349:intron | 25.0% |
| GACAGGAAAACTTATGAAAT+TGG | - | chr6.4:63086139-63086158 | MS.gene66349:intron | 30.0% | |
| GTATATTGTGATGGTTAACT+TGG | - | chr6.4:63085845-63085864 | MS.gene66349:intron | 30.0% | |
| TCAAATGTTCCTTCATTTGT+AGG | + | chr6.4:63087020-63087039 | None:intergenic | 30.0% | |
| TCTAGCAGTTTATCCAAAAT+TGG | + | chr6.4:63086229-63086248 | None:intergenic | 30.0% | |
| TTCGGTTAAGGTAATTAGTT+AGG | - | chr6.4:63086555-63086574 | MS.gene66349:CDS | 30.0% | |
| ! | AATGTTACGTAGGTTGAAAT+TGG | + | chr6.4:63086903-63086922 | None:intergenic | 30.0% |
| ! | ACAGGATTTTTGTAGATTGA+TGG | + | chr6.4:63085257-63085276 | None:intergenic | 30.0% |
| ! | AGTTTTCCTGTCAATATCTA+TGG | + | chr6.4:63086131-63086150 | None:intergenic | 30.0% |
| ! | TGGTTTTCATATTCATTCAG+GGG | - | chr6.4:63085865-63085884 | MS.gene66349:intron | 30.0% |
| !! | CTTGGTTTTCATATTCATTC+AGG | - | chr6.4:63085863-63085882 | MS.gene66349:intron | 30.0% |
| !! | TTCTGCAATGCTTTGAAATT+CGG | - | chr6.4:63085497-63085516 | MS.gene66349:CDS | 30.0% |
| AAATAGAACGTTCAAGTGAG+CGG | - | chr6.4:63086724-63086743 | MS.gene66349:intron | 35.0% | |
| AAATAGATTTAGGCCCTGTT+TGG | + | chr6.4:63086453-63086472 | None:intergenic | 35.0% | |
| AGAAACTACCTCTAGTATTG+AGG | + | chr6.4:63086074-63086093 | None:intergenic | 35.0% | |
| ATAAAACTGGTCAAAGTTGG+TGG | - | chr6.4:63087095-63087114 | MS.gene66349:CDS | 35.0% | |
| ATCATGATGTTTGTCCAAAC+AGG | - | chr6.4:63086436-63086455 | MS.gene66349:intron | 35.0% | |
| CAAAAAGACAATTGAAGTGG+GGG | - | chr6.4:63085951-63085970 | MS.gene66349:intron | 35.0% | |
| CCAAAAAGACAATTGAAGTG+GGG | - | chr6.4:63085950-63085969 | MS.gene66349:intron | 35.0% | |
| CCATGAAAGACTGATAAAAC+TGG | - | chr6.4:63087082-63087101 | MS.gene66349:CDS | 35.0% | |
| CCCAAAAAGACAATTGAAGT+GGG | - | chr6.4:63085949-63085968 | MS.gene66349:intron | 35.0% | |
| CGATTCAACCATAGTTTAAC+AGG | - | chr6.4:63085673-63085692 | MS.gene66349:intron | 35.0% | |
| CTCACATAAGTGTTTATGCT+AGG | + | chr6.4:63086314-63086333 | None:intergenic | 35.0% | |
| CTGATAAAACTGGTCAAAGT+TGG | - | chr6.4:63087092-63087111 | MS.gene66349:CDS | 35.0% | |
| GATATTGTCCTCAATACTAG+AGG | - | chr6.4:63086063-63086082 | MS.gene66349:intron | 35.0% | |
| GTTAAACTATGGTTGAATCG+TGG | + | chr6.4:63085673-63085692 | None:intergenic | 35.0% | |
| TATCTGTCATCCAGTTTAAC+CGG | + | chr6.4:63085583-63085602 | None:intergenic | 35.0% | |
| TCATGATGTTTGTCCAAACA+GGG | - | chr6.4:63086437-63086456 | MS.gene66349:intron | 35.0% | |
| TCCCAAAAAGACAATTGAAG+TGG | - | chr6.4:63085948-63085967 | MS.gene66349:intron | 35.0% | |
| TGATGACTCTTGATGAACAA+TGG | - | chr6.4:63085372-63085391 | MS.gene66349:CDS | 35.0% | |
| TTACAGCCATAGATATTGAC+AGG | - | chr6.4:63086122-63086141 | MS.gene66349:intron | 35.0% | |
| TTATCCAAAATTGGTAGAGC+TGG | + | chr6.4:63086220-63086239 | None:intergenic | 35.0% | |
| TTCTAGTAGATCTTCGGTTA+AGG | - | chr6.4:63086543-63086562 | MS.gene66349:CDS | 35.0% | |
| TTTCATAGCAACTTTACCTG+AGG | - | chr6.4:63085888-63085907 | MS.gene66349:intron | 35.0% | |
| ! | CCCACTTCAATTGTCTTTTT+GGG | + | chr6.4:63085952-63085971 | None:intergenic | 35.0% |
| ! | TATGACAACATTTTATGGGG+TGG | - | chr6.4:63087128-63087147 | MS.gene66349:intron | 35.0% |
| ! | TCTCATTCTCTCGTTTTACA+AGG | + | chr6.4:63086673-63086692 | None:intergenic | 35.0% |
| !! | CCAGTTTTATCAGTCTTTCA+TGG | + | chr6.4:63087085-63087104 | None:intergenic | 35.0% |
| AATAGAACGTTCAAGTGAGC+GGG | - | chr6.4:63086725-63086744 | MS.gene66349:intron | 40.0% | |
| ACACGAGATTTATCGAGGTT+CGG | + | chr6.4:63086857-63086876 | None:intergenic | 40.0% | |
| AGGTTCAACCCGATTCAATA+CGG | - | chr6.4:63085693-63085712 | MS.gene66349:intron | 40.0% | |
| ATGATGCAGCCTACAAATGA+AGG | - | chr6.4:63087008-63087027 | MS.gene66349:intron | 40.0% | |
| CTGGTTGAACCGTATTGAAT+CGG | + | chr6.4:63085705-63085724 | None:intergenic | 40.0% | |
| GGGTTGAACCTGTTAAACTA+TGG | + | chr6.4:63085684-63085703 | None:intergenic | 40.0% | |
| TATGCAAACCTTTCCATCGT+CGG | + | chr6.4:63086019-63086038 | None:intergenic | 40.0% | |
| TGGACTACCTGTCATAAGAA+AGG | - | chr6.4:63086159-63086178 | MS.gene66349:intron | 40.0% | |
| TGGTTGAACCGTATTGAATC+GGG | + | chr6.4:63085704-63085723 | None:intergenic | 40.0% | |
| TGTACACACGAGATTTATCG+AGG | + | chr6.4:63086862-63086881 | None:intergenic | 40.0% | |
| TTACCAAGGATGATTCTCAG+TGG | + | chr6.4:63085467-63085486 | None:intergenic | 40.0% | |
| TTCTCTGTTGTATTGCAGTC+TGG | + | chr6.4:63085724-63085743 | None:intergenic | 40.0% | |
| TTGGTTCAATCAGTTCACTC+CGG | - | chr6.4:63085561-63085580 | MS.gene66349:intron | 40.0% | |
| ! | CCCCACTTCAATTGTCTTTT+TGG | + | chr6.4:63085953-63085972 | None:intergenic | 40.0% |
| ! | GAATTTGCTCTCACTTCTGT+TGG | - | chr6.4:63087251-63087270 | MS.gene66349:CDS | 40.0% |
| !! | AGCGTTTTGGACAAGTTAGT+CGG | - | chr6.4:63086585-63086604 | MS.gene66349:CDS | 40.0% |
| !! | CATTTCTAGTAGCGAATCAC+TGG | - | chr6.4:63086487-63086506 | MS.gene66349:intron | 40.0% |
| ACTCCAGCCTTTCTTATGAC+AGG | + | chr6.4:63086169-63086188 | None:intergenic | 45.0% | |
| ACTTGTCCAAAACGCTGAAC+AGG | + | chr6.4:63086581-63086600 | None:intergenic | 45.0% | |
| ATAGCAACTTTACCTGAGGC+TGG | - | chr6.4:63085892-63085911 | MS.gene66349:intron | 45.0% | |
| ATGCAAACCTTTCCATCGTC+GGG | + | chr6.4:63086018-63086037 | None:intergenic | 45.0% | |
| ATGCCACTGAGAATCATCCT+TGG | - | chr6.4:63085461-63085480 | MS.gene66349:CDS | 45.0% | |
| CTACCTGTCATAAGAAAGGC+TGG | - | chr6.4:63086163-63086182 | MS.gene66349:intron | 45.0% | |
| GAACAAACCAACTGACGAGT+TGG | - | chr6.4:63085741-63085760 | MS.gene66349:intron | 45.0% | |
| TCAGTTCACTCCGGTTAAAC+TGG | - | chr6.4:63085570-63085589 | MS.gene66349:intron | 45.0% | |
| TGCACTGGAACATTCTCTTC+AGG | + | chr6.4:63087167-63087186 | None:intergenic | 45.0% | |
| TGTCATAAGAAAGGCTGGAG+TGG | - | chr6.4:63086168-63086187 | MS.gene66349:intron | 45.0% | |
| ! | GGACAAGTTAGTCGGTGTTT+CGG | - | chr6.4:63086593-63086612 | MS.gene66349:CDS | 45.0% |
| ! | GTCTCCAGCTCTACCAATTT+TGG | - | chr6.4:63086213-63086232 | MS.gene66349:intron | 45.0% |
| ! | TCAATTGCTGCTAGTCTCTG+TGG | + | chr6.4:63087197-63087216 | None:intergenic | 45.0% |
| !! | AAACCAACTGACGAGTTGGT+CGG | - | chr6.4:63085745-63085764 | MS.gene66349:intron | 45.0% |
| !! | ATTGAAGTGGGGGTGTTTAC+TGG | - | chr6.4:63085961-63085980 | MS.gene66349:intron | 45.0% |
| ATCAACCTCGACGAGGATGT+AGG | - | chr6.4:63086818-63086837 | MS.gene66349:intron | 50.0% | |
| CAACATTCCCGACGATGGAA+AGG | - | chr6.4:63086008-63086027 | MS.gene66349:intron | 50.0% | |
| CGGGAATGTTGAGTGCAGTA+AGG | + | chr6.4:63085999-63086018 | None:intergenic | 50.0% | |
| GCAGAGCGAGGACTTAACAA+AGG | - | chr6.4:63085283-63085302 | MS.gene66349:CDS | 50.0% | |
| GCATTCCTCAGCTCTTTGAG+AGG | + | chr6.4:63085445-63085464 | None:intergenic | 50.0% | |
| GCTCTCACTTCTGTTGGAGA+TGG | - | chr6.4:63087257-63087276 | MS.gene66349:CDS | 50.0% | |
| TCCTCGCTCTGCAATATGAC+AGG | + | chr6.4:63085275-63085294 | None:intergenic | 50.0% | |
| TCCTGTCATATTGCAGAGCG+AGG | - | chr6.4:63085271-63085290 | MS.gene66349:CDS | 50.0% | |
| TGAATCCTACATCCTCGTCG+AGG | + | chr6.4:63086826-63086845 | None:intergenic | 50.0% | |
| ! | CTCTGTGGTCTAGAATGCAC+TGG | + | chr6.4:63087182-63087201 | None:intergenic | 50.0% |
| ! | GTGATTAGTTGACCAGCCTC+AGG | + | chr6.4:63085907-63085926 | None:intergenic | 50.0% |
| ! | GTTAGGCCTGTTCAGCGTTT+TGG | - | chr6.4:63086572-63086591 | MS.gene66349:CDS | 50.0% |
| ! | TGGTCGGTTCTCTGTTCAAC+TGG | - | chr6.4:63085761-63085780 | MS.gene66349:intron | 50.0% |
| CTGAGCCTCTCAAAGAGCTG+AGG | - | chr6.4:63085437-63085456 | MS.gene66349:CDS | 55.0% | |
| GAACCGACCAACTCGTCAGT+TGG | + | chr6.4:63085751-63085770 | None:intergenic | 55.0% | |
| GCACTCAACATTCCCGACGA+TGG | - | chr6.4:63086003-63086022 | MS.gene66349:intron | 55.0% | |
| TATGGGGTGGACGTGTTGCA+TGG | - | chr6.4:63087141-63087160 | MS.gene66349:intron | 55.0% | |
| TGAGAGGCTCAGGCTCTCTA+GGG | + | chr6.4:63085429-63085448 | None:intergenic | 55.0% | |
| TGCTGAGATCAACCTCGACG+AGG | - | chr6.4:63086811-63086830 | MS.gene66349:intron | 55.0% | |
| TTGAGAGGCTCAGGCTCTCT+AGG | + | chr6.4:63085430-63085449 | None:intergenic | 55.0% | |
| ! | CTCAGCTCTTTGAGAGGCTC+AGG | + | chr6.4:63085439-63085458 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 63085236 | 63087307 | 63085236 | ID=MS.gene66349 |
| chr6.4 | mRNA | 63085236 | 63087307 | 63085236 | ID=MS.gene66349.t1;Parent=MS.gene66349 |
| chr6.4 | exon | 63087239 | 63087307 | 63087239 | ID=MS.gene66349.t1.exon1;Parent=MS.gene66349.t1 |
| chr6.4 | CDS | 63087239 | 63087307 | 63087239 | ID=cds.MS.gene66349.t1;Parent=MS.gene66349.t1 |
| chr6.4 | exon | 63087061 | 63087140 | 63087061 | ID=MS.gene66349.t1.exon2;Parent=MS.gene66349.t1 |
| chr6.4 | CDS | 63087061 | 63087140 | 63087061 | ID=cds.MS.gene66349.t1;Parent=MS.gene66349.t1 |
| chr6.4 | exon | 63086514 | 63086658 | 63086514 | ID=MS.gene66349.t1.exon3;Parent=MS.gene66349.t1 |
| chr6.4 | CDS | 63086514 | 63086658 | 63086514 | ID=cds.MS.gene66349.t1;Parent=MS.gene66349.t1 |
| chr6.4 | exon | 63086291 | 63086422 | 63086291 | ID=MS.gene66349.t1.exon4;Parent=MS.gene66349.t1 |
| chr6.4 | CDS | 63086291 | 63086422 | 63086291 | ID=cds.MS.gene66349.t1;Parent=MS.gene66349.t1 |
| chr6.4 | exon | 63085236 | 63085526 | 63085236 | ID=MS.gene66349.t1.exon5;Parent=MS.gene66349.t1 |
| chr6.4 | CDS | 63085236 | 63085526 | 63085236 | ID=cds.MS.gene66349.t1;Parent=MS.gene66349.t1 |
| Gene Sequence |
| Protein sequence |
