Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66803.t1 | XP_003606227.2 | 98.8 | 419 | 5 | 0 | 10 | 428 | 851 | 1269 | 9.80E-235 | 822.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66803.t1 | F4HW04 | 74.3 | 416 | 89 | 3 | 13 | 428 | 857 | 1254 | 4.7e-169 | 595.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66803.t1 | G7JKW4 | 98.8 | 419 | 5 | 0 | 10 | 428 | 851 | 1269 | 7.1e-235 | 822.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene66803 | 0.801496 | 8.76E-49 | -1.69E-46 |
| MS.gene050838 | MS.gene66803 | 0.816545 | 5.23E-52 | -1.69E-46 |
| MS.gene050901 | MS.gene66803 | 0.810485 | 1.13E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene66803 | 0.814365 | 1.60E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene66803 | 0.847631 | 1.02E-59 | -1.69E-46 |
| MS.gene052732 | MS.gene66803 | 0.806084 | 9.77E-50 | -1.69E-46 |
| MS.gene052776 | MS.gene66803 | 0.814189 | 1.75E-51 | -1.69E-46 |
| MS.gene053143 | MS.gene66803 | 0.863178 | 3.00E-64 | -1.69E-46 |
| MS.gene053171 | MS.gene66803 | 0.810529 | 1.10E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene66803 | 0.809279 | 2.05E-50 | -1.69E-46 |
| MS.gene054554 | MS.gene66803 | 0.806028 | 1.00E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene66803 | 0.801594 | 8.37E-49 | -1.69E-46 |
| MS.gene054824 | MS.gene66803 | 0.852967 | 3.26E-61 | -1.69E-46 |
| MS.gene055465 | MS.gene66803 | 0.803897 | 2.80E-49 | -1.69E-46 |
| MS.gene055469 | MS.gene66803 | 0.85336 | 2.52E-61 | -1.69E-46 |
| MS.gene055513 | MS.gene66803 | 0.831534 | 1.58E-55 | -1.69E-46 |
| MS.gene056308 | MS.gene66803 | 0.846209 | 2.51E-59 | -1.69E-46 |
| MS.gene056507 | MS.gene66803 | 0.830243 | 3.28E-55 | -1.69E-46 |
| MS.gene057294 | MS.gene66803 | 0.804363 | 2.24E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene66803 | 0.81879 | 1.63E-52 | -1.69E-46 |
| MS.gene058639 | MS.gene66803 | 0.815337 | 9.73E-52 | -1.69E-46 |
| MS.gene058649 | MS.gene66803 | 0.822276 | 2.58E-53 | -1.69E-46 |
| MS.gene05870 | MS.gene66803 | 0.823758 | 1.17E-53 | -1.69E-46 |
| MS.gene061006 | MS.gene66803 | 0.860032 | 2.74E-63 | -1.69E-46 |
| MS.gene061100 | MS.gene66803 | 0.820501 | 6.63E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66803.t1 | MTR_4g054980 | 98.807 | 419 | 5 | 0 | 10 | 428 | 851 | 1269 | 0.0 | 861 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66803.t1 | AT1G08260 | 74.279 | 416 | 89 | 3 | 13 | 428 | 857 | 1254 | 0.0 | 626 |
| MS.gene66803.t1 | AT1G08260 | 74.279 | 416 | 89 | 3 | 13 | 428 | 857 | 1254 | 0.0 | 625 |
| MS.gene66803.t1 | AT2G27120 | 69.952 | 416 | 99 | 5 | 13 | 428 | 849 | 1238 | 0.0 | 575 |
| MS.gene66803.t1 | AT2G27120 | 69.952 | 416 | 99 | 5 | 13 | 428 | 849 | 1238 | 0.0 | 575 |
| MS.gene66803.t1 | AT2G27120 | 69.952 | 416 | 99 | 5 | 13 | 428 | 849 | 1238 | 0.0 | 574 |
Find 73 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTTGTTCATTGACTTAA+AGG | 0.103483 | 4.3:-46223815 | None:intergenic |
| TTCTGAATAGCATTCCTTTA+AGG | 0.131604 | 4.3:-46222816 | None:intergenic |
| TCCTGATTGGTTGCATAAAA+AGG | 0.254420 | 4.3:+46223747 | MS.gene66803:CDS |
| GCTTCATAATGGCGTATAAT+TGG | 0.264780 | 4.3:-46223955 | None:intergenic |
| TCTGCATGGATCAACCTTAA+AGG | 0.276947 | 4.3:+46222802 | MS.gene66803:CDS |
| CCAGGGTTGTTCATCCTGAT+TGG | 0.287192 | 4.3:+46223734 | MS.gene66803:CDS |
| ACTAAGCCGCTGCTTGTAAT+AGG | 0.309838 | 4.3:-46223566 | None:intergenic |
| AGCAAGTCTTTAGCTGATTA+TGG | 0.310626 | 4.3:+46223101 | MS.gene66803:CDS |
| TGAAGTTCTATGTCCGAAAA+TGG | 0.314349 | 4.3:+46223497 | MS.gene66803:CDS |
| AAACGTCTTGCTGACTTTCT+TGG | 0.320459 | 4.3:+46223155 | MS.gene66803:CDS |
| GGAACAGCACGCTCACTTAC+AGG | 0.334550 | 4.3:-46223358 | None:intergenic |
| GTTCATTATTAGCTTCATAA+TGG | 0.358576 | 4.3:-46223966 | None:intergenic |
| GAAGCTAATCAAAGTGTTCC+AGG | 0.378755 | 4.3:+46222269 | MS.gene66803:CDS |
| GATACAATGGTCAAAGATAA+AGG | 0.391993 | 4.3:+46223179 | MS.gene66803:CDS |
| TAGTGGTGTCAACCTTGTTA+TGG | 0.396170 | 4.3:+46223864 | MS.gene66803:CDS |
| AGACACTCACGGATCCAAAT+AGG | 0.398415 | 4.3:+46221973 | MS.gene66803:intron |
| TATCTGCAATATCCTTTCCT+TGG | 0.401777 | 4.3:-46223040 | None:intergenic |
| AATTAAAATTCCTTCCTCCT+TGG | 0.449492 | 4.3:-46222166 | None:intergenic |
| TGAGATTGTCAGCTTCCGTT+TGG | 0.451430 | 4.3:-46221749 | None:intergenic |
| CTATTCAGAAGTTGCTAAAG+AGG | 0.457754 | 4.3:+46222829 | MS.gene66803:CDS |
| GTTAATGACATGGAGGACTT+TGG | 0.459747 | 4.3:+46223898 | MS.gene66803:CDS |
| ATTCCTTCCTCCTTGGAAGC+AGG | 0.468173 | 4.3:-46222159 | None:intergenic |
| TATTCCTGCTGCAATGCAAA+AGG | 0.480500 | 4.3:+46223612 | MS.gene66803:CDS |
| TGAATGCTCTATTGAATTTG+AGG | 0.483434 | 4.3:+46222016 | MS.gene66803:CDS |
| CATAGTAGCAAGTGAGCCTA+AGG | 0.488671 | 4.3:+46223217 | MS.gene66803:CDS |
| AGGTTGCAAATCCTGTCCCC+AGG | 0.488878 | 4.3:+46223716 | MS.gene66803:intron |
| TGAGGTGGATGGACCTTACA+AGG | 0.496127 | 4.3:+46222034 | MS.gene66803:CDS |
| AAGGGAAGGAGTTCTACATT+AGG | 0.497304 | 4.3:+46223925 | MS.gene66803:CDS |
| TAATGGCGTATAATTGGTCT+AGG | 0.505227 | 4.3:-46223949 | None:intergenic |
| AATGATAATTCCTGCTTCCA+AGG | 0.510064 | 4.3:+46222149 | MS.gene66803:CDS |
| CAGAATTCAGAGAAGTTCAA+TGG | 0.517166 | 4.3:+46223988 | MS.gene66803:CDS |
| GGATGAACAACCCTGGGGAC+AGG | 0.526311 | 4.3:-46223727 | None:intergenic |
| GCATTCGCTCTATAATTGAC+TGG | 0.526979 | 4.3:+46223542 | MS.gene66803:CDS |
| GATAGAACTGTAGATTATCA+AGG | 0.532652 | 4.3:+46224087 | MS.gene66803:CDS |
| CATGGAGGACTTTGGAAACA+AGG | 0.535859 | 4.3:+46223906 | MS.gene66803:CDS |
| CAATCAGGATGAACAACCCT+GGG | 0.541132 | 4.3:-46223733 | None:intergenic |
| CTGTTTGAAAAGTTTCTGCA+TGG | 0.547367 | 4.3:+46222788 | MS.gene66803:CDS |
| TCAGTTTCAAATATTGCCAC+AGG | 0.556177 | 4.3:-46223379 | None:intergenic |
| CAAAACCTTTCAGTTCTGCA+AGG | 0.565486 | 4.3:-46222224 | None:intergenic |
| TGCATTTCAGAGACTCCAAA+CGG | 0.568011 | 4.3:+46221734 | MS.gene66803:CDS |
| AAAACCTTTCAGTTCTGCAA+GGG | 0.570017 | 4.3:-46222223 | None:intergenic |
| TGTTATGCTTAATGTTGATG+TGG | 0.573088 | 4.3:+46221780 | MS.gene66803:CDS |
| GGTTGCAAATCCTGTCCCCA+GGG | 0.574559 | 4.3:+46223717 | MS.gene66803:intron |
| GGATCCCTTGCAGAACTGAA+AGG | 0.578239 | 4.3:+46222219 | MS.gene66803:CDS |
| GCAATATTTGAAACTGATGC+TGG | 0.582810 | 4.3:+46223385 | MS.gene66803:CDS |
| TTGCTAAAGAGGCAAACCGC+TGG | 0.583860 | 4.3:+46222840 | MS.gene66803:CDS |
| GAACTGTAGATTATCAAGGA+TGG | 0.585665 | 4.3:+46224091 | MS.gene66803:CDS |
| TGCAAGGTCTCATCAGATGT+TGG | 0.586192 | 4.3:+46223520 | MS.gene66803:CDS |
| CCAATCAGGATGAACAACCC+TGG | 0.591941 | 4.3:-46223734 | None:intergenic |
| TCTATTGAATTTGAGGTGGA+TGG | 0.595437 | 4.3:+46222023 | MS.gene66803:CDS |
| ATTCCTGCTTCCAAGGAGGA+AGG | 0.596532 | 4.3:+46222156 | MS.gene66803:CDS |
| TGACTTTCTTGGTGATACAA+TGG | 0.604425 | 4.3:+46223166 | MS.gene66803:CDS |
| CTTCCTGTTGTACAGAACCA+AGG | 0.615726 | 4.3:+46223023 | MS.gene66803:intron |
| ATCAGCTAAAGACTTGCTCA+TGG | 0.618359 | 4.3:-46223096 | None:intergenic |
| CAGTCTCATCAACCATAACA+AGG | 0.619493 | 4.3:-46223876 | None:intergenic |
| ATGGAGGACTTTGGAAACAA+GGG | 0.626822 | 4.3:+46223907 | MS.gene66803:CDS |
| TAATACAAATGATCAGTACC+AGG | 0.630315 | 4.3:+46221810 | MS.gene66803:CDS |
| ACTGGTCCTATTACAAGCAG+CGG | 0.635450 | 4.3:+46223560 | MS.gene66803:CDS |
| ATGCTCTATTGAATTTGAGG+TGG | 0.636284 | 4.3:+46222019 | MS.gene66803:CDS |
| TGTTGTACAGAACCAAGGAA+AGG | 0.641378 | 4.3:+46223028 | MS.gene66803:intron |
| TGGGAAAGAGAAAGAAGCAA+AGG | 0.643964 | 4.3:+46224148 | MS.gene66803:CDS |
| GAAACTTGTCCTCCTTCTCG+CGG | 0.645903 | 4.3:-46223771 | None:intergenic |
| CTATGTCCGAAAATGGTGCA+AGG | 0.647302 | 4.3:+46223504 | MS.gene66803:CDS |
| AAGTGAGCGTGCTGTTCCTG+TGG | 0.650914 | 4.3:+46223363 | MS.gene66803:CDS |
| TGATGAGACTGTTAATGACA+TGG | 0.667501 | 4.3:+46223888 | MS.gene66803:CDS |
| GTCAGCAAGACGTTTAGCAG+TGG | 0.670205 | 4.3:-46223147 | None:intergenic |
| TCAACATTAAGCATAACACA+AGG | 0.682696 | 4.3:-46221775 | None:intergenic |
| AGGACTTTGGAAACAAGGGA+AGG | 0.693143 | 4.3:+46223911 | MS.gene66803:CDS |
| GATAATTCCTGCTTCCAAGG+AGG | 0.696537 | 4.3:+46222152 | MS.gene66803:CDS |
| CATCAAGAAGATCAAGCCAG+CGG | 0.720275 | 4.3:-46222856 | None:intergenic |
| CAACATTAAGCATAACACAA+GGG | 0.720524 | 4.3:-46221774 | None:intergenic |
| TGAGACTGTTAATGACATGG+AGG | 0.783008 | 4.3:+46223891 | MS.gene66803:CDS |
| AATCAGGATGAACAACCCTG+GGG | 0.822010 | 4.3:-46223732 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAAATTATTGCTTGTA+CGG | + | chr4.3:46222109-46222128 | MS.gene66803:intron | 15.0% |
| !!! | AATCTTTTTATTAAAATACC+TGG | - | chr4.3:46222290-46222309 | None:intergenic | 15.0% |
| !! | CAGGAAGAATTTAAATATTT+AGG | - | chr4.3:46223010-46223029 | None:intergenic | 20.0% |
| !! | TAAATAAGTATAGTGAAACA+CGG | - | chr4.3:46222095-46222114 | None:intergenic | 20.0% |
| !! | TTCAATTAAAAAAGAGAAAG+TGG | + | chr4.3:46224115-46224134 | MS.gene66803:CDS | 20.0% |
| ! | AAATAAGTATAGTGAAACAC+GGG | - | chr4.3:46222094-46222113 | None:intergenic | 25.0% |
| ! | TAACTTTGATGTTACATTTC+AGG | - | chr4.3:46222676-46222695 | None:intergenic | 25.0% |
| ! | TACGCAATCTATTAAAATAG+AGG | - | chr4.3:46222639-46222658 | None:intergenic | 25.0% |
| ! | TCAAGCTATCACATTAAAAT+AGG | - | chr4.3:46222609-46222628 | None:intergenic | 25.0% |
| ! | TTATTGTAACTGAATTACCA+GGG | + | chr4.3:46222907-46222926 | MS.gene66803:intron | 25.0% |
| ! | TTCATAAAACATTAGAACAC+AGG | - | chr4.3:46223678-46223697 | None:intergenic | 25.0% |
| ! | TTTATTGTAACTGAATTACC+AGG | + | chr4.3:46222906-46222925 | MS.gene66803:intron | 25.0% |
| !! | AAAAAGCATAATGATTCTAG+TGG | + | chr4.3:46223847-46223866 | MS.gene66803:CDS | 25.0% |
| !! | GTTCATTATTAGCTTCATAA+TGG | - | chr4.3:46223969-46223988 | None:intergenic | 25.0% |
| !! | GTTGTATAAGTTTTCCTATT+TGG | - | chr4.3:46221990-46222009 | None:intergenic | 25.0% |
| !!! | AATAAGATTTGGTAATGACA+AGG | + | chr4.3:46222334-46222353 | MS.gene66803:intron | 25.0% |
| !!! | AGGTATCATCTATTTTTCTT+TGG | - | chr4.3:46223798-46223817 | None:intergenic | 25.0% |
| !!! | ATTCTTGTTCATTGACTTAA+AGG | - | chr4.3:46223818-46223837 | None:intergenic | 25.0% |
| !!! | GGTAAGTTTCTTGTTTTTTA+AGG | + | chr4.3:46223406-46223425 | MS.gene66803:intron | 25.0% |
| !!! | TATGCTGTTTTTAATGATGA+TGG | + | chr4.3:46222198-46222217 | MS.gene66803:CDS | 25.0% |
| !!! | TTGCAGTCTTTATTTTTTCA+GGG | + | chr4.3:46222504-46222523 | MS.gene66803:intron | 25.0% |
| AAAACATTAGAACACAGGAA+TGG | - | chr4.3:46223673-46223692 | None:intergenic | 30.0% | |
| AAAGTTATAGTTCAATGCTC+AGG | + | chr4.3:46222689-46222708 | MS.gene66803:intron | 30.0% | |
| AAGTTATAGTTCAATGCTCA+GGG | + | chr4.3:46222690-46222709 | MS.gene66803:intron | 30.0% | |
| AATATTTCCCTTTCACTACA+AGG | + | chr4.3:46222405-46222424 | MS.gene66803:intron | 30.0% | |
| AATTAAAATTCCTTCCTCCT+TGG | - | chr4.3:46222169-46222188 | None:intergenic | 30.0% | |
| AGAAAAAATATTAAAGCCCC+TGG | - | chr4.3:46222927-46222946 | None:intergenic | 30.0% | |
| AGAAAGAATGATGTAATCAC+AGG | - | chr4.3:46221936-46221955 | None:intergenic | 30.0% | |
| AGAAAGTGGAAAAATATGCT+GGG | + | chr4.3:46224129-46224148 | MS.gene66803:CDS | 30.0% | |
| ATATTTCCCTTTCACTACAA+GGG | + | chr4.3:46222406-46222425 | MS.gene66803:intron | 30.0% | |
| CAACATTAAGCATAACACAA+GGG | - | chr4.3:46221777-46221796 | None:intergenic | 30.0% | |
| CAGTAAACAAGCAGATTATT+TGG | - | chr4.3:46223295-46223314 | None:intergenic | 30.0% | |
| GATACAATGGTCAAAGATAA+AGG | + | chr4.3:46223179-46223198 | MS.gene66803:CDS | 30.0% | |
| GATAGAACTGTAGATTATCA+AGG | + | chr4.3:46224087-46224106 | MS.gene66803:CDS | 30.0% | |
| GGTGTGATCTATGAATAATT+TGG | + | chr4.3:46223238-46223257 | MS.gene66803:intron | 30.0% | |
| GTGATGCATACAATAAGATT+TGG | + | chr4.3:46222323-46222342 | MS.gene66803:intron | 30.0% | |
| TAAAGACTATTGTCATTGCA+GGG | + | chr4.3:46223331-46223350 | MS.gene66803:intron | 30.0% | |
| TAATACAAATGATCAGTACC+AGG | + | chr4.3:46221810-46221829 | MS.gene66803:CDS | 30.0% | |
| TATTGTAACTGAATTACCAG+GGG | + | chr4.3:46222908-46222927 | MS.gene66803:intron | 30.0% | |
| TCAACATTAAGCATAACACA+AGG | - | chr4.3:46221778-46221797 | None:intergenic | 30.0% | |
| TGAATGCTCTATTGAATTTG+AGG | + | chr4.3:46222016-46222035 | MS.gene66803:CDS | 30.0% | |
| TGTTATGCTTAATGTTGATG+TGG | + | chr4.3:46221780-46221799 | MS.gene66803:CDS | 30.0% | |
| TTATTCATAGATCACACCTT+AGG | - | chr4.3:46223236-46223255 | None:intergenic | 30.0% | |
| TTCTGAATAGCATTCCTTTA+AGG | - | chr4.3:46222819-46222838 | None:intergenic | 30.0% | |
| !!! | ATGTATCCATACTTTTTTCC+TGG | + | chr4.3:46222359-46222378 | MS.gene66803:intron | 30.0% |
| !!! | CTTGCAGTCTTTATTTTTTC+AGG | + | chr4.3:46222503-46222522 | MS.gene66803:intron | 30.0% |
| !!! | TTGAAGTTGCTTTTTTCAAC+AGG | + | chr4.3:46222760-46222779 | MS.gene66803:intron | 30.0% |
| AAAACCTTTCAGTTCTGCAA+GGG | - | chr4.3:46222226-46222245 | None:intergenic | 35.0% | |
| AAGAAGAGTTTAATGCTTGC+AGG | + | chr4.3:46223696-46223715 | MS.gene66803:intron | 35.0% | |
| AATGATAATTCCTGCTTCCA+AGG | + | chr4.3:46222149-46222168 | MS.gene66803:CDS | 35.0% | |
| AGCAAGTCTTTAGCTGATTA+TGG | + | chr4.3:46223101-46223120 | MS.gene66803:CDS | 35.0% | |
| AGGACGCAGAAAAATGTATT+GGG | - | chr4.3:46222990-46223009 | None:intergenic | 35.0% | |
| ATGCTCTATTGAATTTGAGG+TGG | + | chr4.3:46222019-46222038 | MS.gene66803:CDS | 35.0% | |
| ATGGACCTTACAAGGTAAAA+TGG | + | chr4.3:46222042-46222061 | MS.gene66803:intron | 35.0% | |
| ATGTATGTGCTAAAGATTGC+AGG | + | chr4.3:46222876-46222895 | MS.gene66803:intron | 35.0% | |
| CAGAATTCAGAGAAGTTCAA+TGG | + | chr4.3:46223988-46224007 | MS.gene66803:CDS | 35.0% | |
| CTAAAGACTATTGTCATTGC+AGG | + | chr4.3:46223330-46223349 | MS.gene66803:intron | 35.0% | |
| CTATTCAGAAGTTGCTAAAG+AGG | + | chr4.3:46222829-46222848 | MS.gene66803:CDS | 35.0% | |
| CTGTTTGAAAAGTTTCTGCA+TGG | + | chr4.3:46222788-46222807 | MS.gene66803:CDS | 35.0% | |
| GAACTGTAGATTATCAAGGA+TGG | + | chr4.3:46224091-46224110 | MS.gene66803:CDS | 35.0% | |
| GAGAAAGTGGAAAAATATGC+TGG | + | chr4.3:46224128-46224147 | MS.gene66803:CDS | 35.0% | |
| GCTTCATAATGGCGTATAAT+TGG | - | chr4.3:46223958-46223977 | None:intergenic | 35.0% | |
| TACAAGGGTGATAGTAAGTA+AGG | + | chr4.3:46222421-46222440 | MS.gene66803:intron | 35.0% | |
| TAGGACGCAGAAAAATGTAT+TGG | - | chr4.3:46222991-46223010 | None:intergenic | 35.0% | |
| TAGTTAGTTGAAGATACCGA+TGG | + | chr4.3:46222958-46222977 | MS.gene66803:intron | 35.0% | |
| TATCTGCAATATCCTTTCCT+TGG | - | chr4.3:46223043-46223062 | None:intergenic | 35.0% | |
| TCAGTTTCAAATATTGCCAC+AGG | - | chr4.3:46223382-46223401 | None:intergenic | 35.0% | |
| TGAAGTTCTATGTCCGAAAA+TGG | + | chr4.3:46223497-46223516 | MS.gene66803:CDS | 35.0% | |
| TGATGAGACTGTTAATGACA+TGG | + | chr4.3:46223888-46223907 | MS.gene66803:CDS | 35.0% | |
| TGTAATCACAGGTATAAGCA+AGG | - | chr4.3:46221925-46221944 | None:intergenic | 35.0% | |
| ! | AATTTTCTGACAGACACTCA+CGG | + | chr4.3:46221962-46221981 | MS.gene66803:intron | 35.0% |
| ! | ACCTTTTTATGCAACCAATC+AGG | - | chr4.3:46223751-46223770 | None:intergenic | 35.0% |
| ! | CTACTCCATTTTACCTTGTA+AGG | - | chr4.3:46222050-46222069 | None:intergenic | 35.0% |
| ! | GCAATATTTGAAACTGATGC+TGG | + | chr4.3:46223385-46223404 | MS.gene66803:CDS | 35.0% |
| ! | TAATGGCGTATAATTGGTCT+AGG | - | chr4.3:46223952-46223971 | None:intergenic | 35.0% |
| ! | TCCTGATTGGTTGCATAAAA+AGG | + | chr4.3:46223747-46223766 | MS.gene66803:CDS | 35.0% |
| ! | TCTATTGAATTTGAGGTGGA+TGG | + | chr4.3:46222023-46222042 | MS.gene66803:CDS | 35.0% |
| ! | TGAACAGTTTGAAACTCGTT+AGG | + | chr4.3:46222581-46222600 | MS.gene66803:intron | 35.0% |
| ! | TGACTTTCTTGGTGATACAA+TGG | + | chr4.3:46223166-46223185 | MS.gene66803:CDS | 35.0% |
| !!! | CAGTCTTTATTTTTTCAGGG+AGG | + | chr4.3:46222507-46222526 | MS.gene66803:intron | 35.0% |
| AAGGGAAGGAGTTCTACATT+AGG | + | chr4.3:46223925-46223944 | MS.gene66803:CDS | 40.0% | |
| ACTATCACCCTTGTAGTGAA+AGG | - | chr4.3:46222416-46222435 | None:intergenic | 40.0% | |
| AGTAAGGTTGTATGCATCTG+TGG | + | chr4.3:46222437-46222456 | MS.gene66803:intron | 40.0% | |
| CAAAACCTTTCAGTTCTGCA+AGG | - | chr4.3:46222227-46222246 | None:intergenic | 40.0% | |
| CAGTCTCATCAACCATAACA+AGG | - | chr4.3:46223879-46223898 | None:intergenic | 40.0% | |
| CTATCACCCTTGTAGTGAAA+GGG | - | chr4.3:46222415-46222434 | None:intergenic | 40.0% | |
| GAAAAAACTACAAGCTCACC+TGG | - | chr4.3:46221831-46221850 | None:intergenic | 40.0% | |
| GATGCACCAGGAAAAAAGTA+TGG | - | chr4.3:46222368-46222387 | None:intergenic | 40.0% | |
| GCATTCGCTCTATAATTGAC+TGG | + | chr4.3:46223542-46223561 | MS.gene66803:CDS | 40.0% | |
| GGACGCAGAAAAATGTATTG+GGG | - | chr4.3:46222989-46223008 | None:intergenic | 40.0% | |
| GTTAATGACATGGAGGACTT+TGG | + | chr4.3:46223898-46223917 | MS.gene66803:CDS | 40.0% | |
| TATTCCTGCTGCAATGCAAA+AGG | + | chr4.3:46223612-46223631 | MS.gene66803:CDS | 40.0% | |
| TCTGCATGGATCAACCTTAA+AGG | + | chr4.3:46222802-46222821 | MS.gene66803:CDS | 40.0% | |
| TGAGACTGTTAATGACATGG+AGG | + | chr4.3:46223891-46223910 | MS.gene66803:CDS | 40.0% | |
| TGCATTTCAGAGACTCCAAA+CGG | + | chr4.3:46221734-46221753 | MS.gene66803:CDS | 40.0% | |
| TGTTGTACAGAACCAAGGAA+AGG | + | chr4.3:46223028-46223047 | MS.gene66803:intron | 40.0% | |
| ! | ATCAGCTAAAGACTTGCTCA+TGG | - | chr4.3:46223099-46223118 | None:intergenic | 40.0% |
| ! | ATGAGACCTTGCACCATTTT+CGG | - | chr4.3:46223513-46223532 | None:intergenic | 40.0% |
| ! | ATGGAGGACTTTGGAAACAA+GGG | + | chr4.3:46223907-46223926 | MS.gene66803:CDS | 40.0% |
| ! | GAAGCTAATCAAAGTGTTCC+AGG | + | chr4.3:46222269-46222288 | MS.gene66803:CDS | 40.0% |
| ! | TAGTGGTGTCAACCTTGTTA+TGG | + | chr4.3:46223864-46223883 | MS.gene66803:CDS | 40.0% |
| ! | TGTACGGTTTGCTTTGTTGT+AGG | + | chr4.3:46222125-46222144 | MS.gene66803:intron | 40.0% |
| !! | AAACGTCTTGCTGACTTTCT+TGG | + | chr4.3:46223155-46223174 | MS.gene66803:CDS | 40.0% |
| !! | TTTCCTTGGTTCTGTACAAC+AGG | - | chr4.3:46223029-46223048 | None:intergenic | 40.0% |
| AATCAGGATGAACAACCCTG+GGG | - | chr4.3:46223735-46223754 | None:intergenic | 45.0% | |
| ACTAAGCCGCTGCTTGTAAT+AGG | - | chr4.3:46223569-46223588 | None:intergenic | 45.0% | |
| ACTGGTCCTATTACAAGCAG+CGG | + | chr4.3:46223560-46223579 | MS.gene66803:CDS | 45.0% | |
| AGACACTCACGGATCCAAAT+AGG | + | chr4.3:46221973-46221992 | MS.gene66803:intron | 45.0% | |
| CAATCAGGATGAACAACCCT+GGG | - | chr4.3:46223736-46223755 | None:intergenic | 45.0% | |
| CATAGTAGCAAGTGAGCCTA+AGG | + | chr4.3:46223217-46223236 | MS.gene66803:CDS | 45.0% | |
| CATCAAGAAGATCAAGCCAG+CGG | - | chr4.3:46222859-46222878 | None:intergenic | 45.0% | |
| CTATGTCCGAAAATGGTGCA+AGG | + | chr4.3:46223504-46223523 | MS.gene66803:CDS | 45.0% | |
| CTTCCTGTTGTACAGAACCA+AGG | + | chr4.3:46223023-46223042 | MS.gene66803:intron | 45.0% | |
| GATAATTCCTGCTTCCAAGG+AGG | + | chr4.3:46222152-46222171 | MS.gene66803:CDS | 45.0% | |
| TGAGATTGTCAGCTTCCGTT+TGG | - | chr4.3:46221752-46221771 | None:intergenic | 45.0% | |
| TGCAAGGTCTCATCAGATGT+TGG | + | chr4.3:46223520-46223539 | MS.gene66803:CDS | 45.0% | |
| ! | AGGACTTTGGAAACAAGGGA+AGG | + | chr4.3:46223911-46223930 | MS.gene66803:CDS | 45.0% |
| ! | CAAACCTTTTGCATTGCAGC+AGG | - | chr4.3:46223619-46223638 | None:intergenic | 45.0% |
| ! | CATGGAGGACTTTGGAAACA+AGG | + | chr4.3:46223906-46223925 | MS.gene66803:CDS | 45.0% |
| ATGTATTGGGGCGAGACCAT+CGG | - | chr4.3:46222977-46222996 | None:intergenic | 50.0% | |
| ATTCCTGCTTCCAAGGAGGA+AGG | + | chr4.3:46222156-46222175 | MS.gene66803:CDS | 50.0% | |
| ATTCCTTCCTCCTTGGAAGC+AGG | - | chr4.3:46222162-46222181 | None:intergenic | 50.0% | |
| CCAATCAGGATGAACAACCC+TGG | - | chr4.3:46223737-46223756 | None:intergenic | 50.0% | |
| CCAGGGTTGTTCATCCTGAT+TGG | + | chr4.3:46223734-46223753 | MS.gene66803:CDS | 50.0% | |
| GAAACTTGTCCTCCTTCTCG+CGG | - | chr4.3:46223774-46223793 | None:intergenic | 50.0% | |
| GCATAAAAAGGTCCGCGAGA+AGG | + | chr4.3:46223759-46223778 | MS.gene66803:CDS | 50.0% | |
| GGATCCCTTGCAGAACTGAA+AGG | + | chr4.3:46222219-46222238 | MS.gene66803:CDS | 50.0% | |
| GTCAGCAAGACGTTTAGCAG+TGG | - | chr4.3:46223150-46223169 | None:intergenic | 50.0% | |
| TAAAAAGGTCCGCGAGAAGG+AGG | + | chr4.3:46223762-46223781 | MS.gene66803:CDS | 50.0% | |
| TCCATCAACTCAGATGCACC+AGG | - | chr4.3:46222380-46222399 | None:intergenic | 50.0% | |
| TGAGGTGGATGGACCTTACA+AGG | + | chr4.3:46222034-46222053 | MS.gene66803:CDS | 50.0% | |
| TTGCTAAAGAGGCAAACCGC+TGG | + | chr4.3:46222840-46222859 | MS.gene66803:CDS | 50.0% | |
| ! | TCCTGGTGCATCTGAGTTGA+TGG | + | chr4.3:46222376-46222395 | MS.gene66803:intron | 50.0% |
| !!! | GGTTTTGAGATCAAGCGCAG+AGG | + | chr4.3:46222240-46222259 | MS.gene66803:CDS | 50.0% |
| AGGTTGCAAATCCTGTCCCC+AGG | + | chr4.3:46223716-46223735 | MS.gene66803:intron | 55.0% | |
| GGAACAGCACGCTCACTTAC+AGG | - | chr4.3:46223361-46223380 | None:intergenic | 55.0% | |
| GGTTGCAAATCCTGTCCCCA+GGG | + | chr4.3:46223717-46223736 | MS.gene66803:intron | 55.0% | |
| ! | AAGTGAGCGTGCTGTTCCTG+TGG | + | chr4.3:46223363-46223382 | MS.gene66803:CDS | 55.0% |
| GGATGAACAACCCTGGGGAC+AGG | - | chr4.3:46223730-46223749 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 46221718 | 46224169 | 46221718 | ID=MS.gene66803 |
| chr4.3 | mRNA | 46221718 | 46224169 | 46221718 | ID=MS.gene66803.t1;Parent=MS.gene66803 |
| chr4.3 | exon | 46221718 | 46221831 | 46221718 | ID=MS.gene66803.t1.exon1;Parent=MS.gene66803.t1 |
| chr4.3 | CDS | 46221718 | 46221831 | 46221718 | ID=cds.MS.gene66803.t1;Parent=MS.gene66803.t1 |
| chr4.3 | exon | 46221975 | 46222055 | 46221975 | ID=MS.gene66803.t1.exon2;Parent=MS.gene66803.t1 |
| chr4.3 | CDS | 46221975 | 46222055 | 46221975 | ID=cds.MS.gene66803.t1;Parent=MS.gene66803.t1 |
| chr4.3 | exon | 46222147 | 46222290 | 46222147 | ID=MS.gene66803.t1.exon3;Parent=MS.gene66803.t1 |
| chr4.3 | CDS | 46222147 | 46222290 | 46222147 | ID=cds.MS.gene66803.t1;Parent=MS.gene66803.t1 |
| chr4.3 | exon | 46222782 | 46222877 | 46222782 | ID=MS.gene66803.t1.exon4;Parent=MS.gene66803.t1 |
| chr4.3 | CDS | 46222782 | 46222877 | 46222782 | ID=cds.MS.gene66803.t1;Parent=MS.gene66803.t1 |
| chr4.3 | exon | 46223038 | 46223238 | 46223038 | ID=MS.gene66803.t1.exon5;Parent=MS.gene66803.t1 |
| chr4.3 | CDS | 46223038 | 46223238 | 46223038 | ID=cds.MS.gene66803.t1;Parent=MS.gene66803.t1 |
| chr4.3 | exon | 46223352 | 46223406 | 46223352 | ID=MS.gene66803.t1.exon6;Parent=MS.gene66803.t1 |
| chr4.3 | CDS | 46223352 | 46223406 | 46223352 | ID=cds.MS.gene66803.t1;Parent=MS.gene66803.t1 |
| chr4.3 | exon | 46223491 | 46223633 | 46223491 | ID=MS.gene66803.t1.exon7;Parent=MS.gene66803.t1 |
| chr4.3 | CDS | 46223491 | 46223633 | 46223491 | ID=cds.MS.gene66803.t1;Parent=MS.gene66803.t1 |
| chr4.3 | exon | 46223718 | 46224169 | 46223718 | ID=MS.gene66803.t1.exon8;Parent=MS.gene66803.t1 |
| chr4.3 | CDS | 46223718 | 46224169 | 46223718 | ID=cds.MS.gene66803.t1;Parent=MS.gene66803.t1 |
| Gene Sequence |
| Protein sequence |
