Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056424.t1 | RHN41616.1 | 90 | 611 | 55 | 2 | 49 | 657 | 131 | 737 | 2.90E-287 | 998 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056424.t1 | A0A396GKG8 | 90.0 | 611 | 55 | 2 | 49 | 657 | 131 | 737 | 2.1e-287 | 998.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051744 | MS.gene056424 | 0.817224 | 3.68E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene056424 | 0.816987 | 4.17E-52 | -1.69E-46 |
| MS.gene056424 | MS.gene057915 | 0.809497 | 1.84E-50 | -1.69E-46 |
| MS.gene056424 | MS.gene061594 | 0.802534 | 5.36E-49 | -1.69E-46 |
| MS.gene056424 | MS.gene066784 | 0.806532 | 7.86E-50 | -1.69E-46 |
| MS.gene056424 | MS.gene070301 | 0.817942 | 2.54E-52 | -1.69E-46 |
| MS.gene056424 | MS.gene07876 | 0.80841 | 3.14E-50 | -1.69E-46 |
| MS.gene056424 | MS.gene08396 | 0.85138 | 9.22E-61 | -1.69E-46 |
| MS.gene056424 | MS.gene09600 | 0.805268 | 1.45E-49 | -1.69E-46 |
| MS.gene056424 | MS.gene20298 | 0.804646 | 1.96E-49 | -1.69E-46 |
| MS.gene056424 | MS.gene35218 | 0.862442 | 5.05E-64 | -1.69E-46 |
| MS.gene056424 | MS.gene44434 | 0.835917 | 1.27E-56 | -1.69E-46 |
| MS.gene056424 | MS.gene45613 | 0.805722 | 1.16E-49 | -1.69E-46 |
| MS.gene056424 | MS.gene51818 | 0.802227 | 6.20E-49 | -1.69E-46 |
| MS.gene056424 | MS.gene53409 | 0.812127 | 4.96E-51 | -1.69E-46 |
| MS.gene056424 | MS.gene55406 | 0.810404 | 1.17E-50 | -1.69E-46 |
| MS.gene056424 | MS.gene58802 | 0.804259 | 2.35E-49 | -1.69E-46 |
| MS.gene056424 | MS.gene60171 | 0.804869 | 1.76E-49 | -1.69E-46 |
| MS.gene056424 | MS.gene60935 | 0.825476 | 4.59E-54 | -1.69E-46 |
| MS.gene056424 | MS.gene67168 | 0.808332 | 3.26E-50 | -1.69E-46 |
| MS.gene056424 | MS.gene71718 | 0.801835 | 7.46E-49 | -1.69E-46 |
| MS.gene056424 | MS.gene73564 | 0.8093 | 2.03E-50 | -1.69E-46 |
| MS.gene056424 | MS.gene79285 | 0.814453 | 1.53E-51 | -1.69E-46 |
| MS.gene056424 | MS.gene80280 | 0.826156 | 3.17E-54 | -1.69E-46 |
| MS.gene056424 | MS.gene88171 | 0.819333 | 1.23E-52 | -1.69E-46 |
| MS.gene056424 | MS.gene89419 | 0.815233 | 1.03E-51 | -1.69E-46 |
| MS.gene056424 | MS.gene97344 | 0.803358 | 3.62E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056424.t1 | MTR_8g069400 | 93.875 | 898 | 24 | 4 | 49 | 942 | 131 | 1001 | 0.0 | 1659 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056424.t1 | AT1G70620 | 33.850 | 774 | 362 | 28 | 49 | 780 | 141 | 806 | 5.61e-61 | 225 |
| MS.gene056424.t1 | AT1G70620 | 33.290 | 772 | 352 | 28 | 49 | 780 | 141 | 789 | 9.91e-59 | 218 |
| MS.gene056424.t1 | AT1G70620 | 32.994 | 785 | 367 | 29 | 49 | 780 | 141 | 819 | 7.46e-56 | 209 |
| MS.gene056424.t1 | AT1G70620 | 32.994 | 785 | 367 | 29 | 49 | 780 | 141 | 819 | 1.64e-55 | 208 |
| MS.gene056424.t1 | AT1G70620 | 36.563 | 547 | 265 | 16 | 274 | 780 | 20 | 524 | 1.18e-51 | 192 |
| MS.gene056424.t1 | AT1G70620 | 36.563 | 547 | 265 | 16 | 274 | 780 | 20 | 524 | 1.18e-51 | 192 |
| MS.gene056424.t1 | AT1G70620 | 36.514 | 545 | 268 | 15 | 274 | 780 | 20 | 524 | 1.55e-51 | 192 |
| MS.gene056424.t1 | AT1G70620 | 36.563 | 547 | 265 | 16 | 274 | 780 | 20 | 524 | 1.70e-51 | 192 |
| MS.gene056424.t1 | AT1G70620 | 35.284 | 564 | 265 | 17 | 260 | 780 | 1 | 507 | 7.01e-50 | 186 |
Find 247 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGATGCATATGGTGTTTC+TGG | 0.102966 | 8.2:+33654843 | MS.gene056424:CDS |
| TTTCATCTGGCCTGGTCTTA+TGG | 0.189173 | 8.2:-33656317 | None:intergenic |
| CTGGTTCTTCAATGAATAAC+TGG | 0.226524 | 8.2:+33654523 | MS.gene056424:CDS |
| AGAAGCCACAATAGGTTTAA+TGG | 0.228827 | 8.2:+33656123 | MS.gene056424:CDS |
| TCTGTTTCCTTTGCTTTAAC+TGG | 0.244662 | 8.2:-33655802 | None:intergenic |
| TCTAAAGATGCTAGGGATAA+TGG | 0.258472 | 8.2:+33656084 | MS.gene056424:CDS |
| ACAAGTGTTTCTTCCACTTT+TGG | 0.261379 | 8.2:-33655029 | None:intergenic |
| ACTTATAATCATCATGATTC+TGG | 0.266642 | 8.2:+33654504 | MS.gene056424:CDS |
| CCATCTATGCAGCGAAATTC+AGG | 0.277511 | 8.2:+33652317 | MS.gene056424:CDS |
| TTGCTTTCTCCGCGCCATTC+TGG | 0.278935 | 8.2:-33656194 | None:intergenic |
| ATTCTTCTCTTGATAATTCC+AGG | 0.286253 | 8.2:+33658321 | MS.gene056424:CDS |
| TCAGAAATTACCTACCTTCT+TGG | 0.296391 | 8.2:-33654880 | None:intergenic |
| CGAAGATACTAGCCGGAAAA+AGG | 0.308241 | 8.2:+33656542 | MS.gene056424:CDS |
| ATCAGCCCATGCTCTGGCCT+TGG | 0.315100 | 8.2:-33652120 | None:intergenic |
| ATCTGAATGATCAGATTCTT+TGG | 0.317443 | 8.2:-33656046 | None:intergenic |
| ATGCTTCCGAACTGGTGATT+TGG | 0.318966 | 8.2:-33658517 | None:intergenic |
| AACGTAGGTGCAAAATTTAA+AGG | 0.319914 | 8.2:-33654450 | None:intergenic |
| AGTATAAGCTGCCTCTAAAT+TGG | 0.320060 | 8.2:-33652363 | None:intergenic |
| TTCAGGCATCAGTCCCTAAC+TGG | 0.335029 | 8.2:+33654955 | MS.gene056424:intron |
| TATAAGTTGATTGCATTTGC+AGG | 0.347845 | 8.2:-33654488 | None:intergenic |
| GGAATTATCAAGAGAAGAAT+AGG | 0.348274 | 8.2:-33658318 | None:intergenic |
| ATTTCCTCTCTAAGCCAGTT+AGG | 0.348825 | 8.2:-33654969 | None:intergenic |
| CTAAAGATGCTAGGGATAAT+GGG | 0.349840 | 8.2:+33656085 | MS.gene056424:CDS |
| TCTAGTTATAGTTCTGTTGC+AGG | 0.351270 | 8.2:+33652500 | MS.gene056424:CDS |
| TGCAAAAGATGATGCATATA+TGG | 0.353043 | 8.2:+33655939 | MS.gene056424:CDS |
| GCACCATATGGAAGGTTTCC+TGG | 0.355883 | 8.2:+33654732 | MS.gene056424:CDS |
| TGATAGTGATGAGTTGGTTT+TGG | 0.356609 | 8.2:-33655974 | None:intergenic |
| CCTGAATTTCGCTGCATAGA+TGG | 0.363036 | 8.2:-33652317 | None:intergenic |
| CCCAATCTTCTTCATTCGTA+TGG | 0.364632 | 8.2:-33652094 | None:intergenic |
| GGGTCTACAGATTGCTGATA+TGG | 0.367987 | 8.2:-33652227 | None:intergenic |
| GGATGAAAGAAATCAGAAAA+AGG | 0.371098 | 8.2:+33656365 | MS.gene056424:CDS |
| CAGAAATTACCTACCTTCTT+GGG | 0.373246 | 8.2:-33654879 | None:intergenic |
| GGCGTGATTATGATCCTTGC+TGG | 0.373541 | 8.2:-33656670 | None:intergenic |
| GCTCCAGTGGCACCTGGTGT+TGG | 0.376044 | 8.2:+33654549 | MS.gene056424:CDS |
| CCTACCTTCTTGGGACGTTC+AGG | 0.382495 | 8.2:-33654870 | None:intergenic |
| GTGGAGAGATCGATGCCTTA+TGG | 0.385755 | 8.2:-33655738 | None:intergenic |
| AGGTAAAGAGGCAGCTGATC+AGG | 0.389396 | 8.2:+33654290 | MS.gene056424:intron |
| GCTGATATGGATCATGATAA+TGG | 0.398791 | 8.2:-33652214 | None:intergenic |
| AAGACCAGGCCAGATGAAAA+AGG | 0.401623 | 8.2:+33656321 | MS.gene056424:CDS |
| CTTGACCTATGCTGCCGAAC+AGG | 0.410457 | 8.2:-33658717 | None:intergenic |
| AATTCTAATTCCAGCTCTCC+TGG | 0.413162 | 8.2:+33655844 | MS.gene056424:CDS |
| TTAGCAGTTGCCTTAGGAAC+CGG | 0.418503 | 8.2:-33655769 | None:intergenic |
| TGGTCACGCAATTCAGATCT+TGG | 0.419022 | 8.2:-33656174 | None:intergenic |
| AAGGCTCAGATGGCTCAAAA+AGG | 0.424712 | 8.2:+33656709 | MS.gene056424:CDS |
| AACCATTCTCATTCATCATC+AGG | 0.428057 | 8.2:+33652269 | MS.gene056424:CDS |
| CCCATACGAATGAAGAAGAT+TGG | 0.431351 | 8.2:+33652093 | MS.gene056424:CDS |
| GGCTCCATCTGCCAATTTAG+AGG | 0.431991 | 8.2:+33652352 | MS.gene056424:CDS |
| AACGATGGTGCATGCATTGA+TGG | 0.432968 | 8.2:-33654378 | None:intergenic |
| ATGCTTCCGAACAGGTGATC+TGG | 0.434226 | 8.2:-33658616 | None:intergenic |
| GCTCGTTCAAACGAAGTAGT+TGG | 0.434934 | 8.2:-33652434 | None:intergenic |
| ATGCTGCCGAACAGGTGATC+TGG | 0.436507 | 8.2:-33658709 | None:intergenic |
| ATGCCGCCGAACAGGTGATC+TGG | 0.437860 | 8.2:-33658742 | None:intergenic |
| CTGATATGGATCATGATAAT+GGG | 0.439803 | 8.2:-33652213 | None:intergenic |
| AGCTGCTGTGTTAAGGGAAT+AGG | 0.440045 | 8.2:-33654793 | None:intergenic |
| CCAGAGACGGGACCAGCGTC+GGG | 0.443632 | 8.2:+33652408 | MS.gene056424:CDS |
| GAATTGTAGCTGCTGTGTTA+AGG | 0.444029 | 8.2:-33654800 | None:intergenic |
| TTTCCTCTCTAAGCCAGTTA+GGG | 0.444463 | 8.2:-33654968 | None:intergenic |
| AAAACTTTAGCAGTTGCCTT+AGG | 0.444942 | 8.2:-33655775 | None:intergenic |
| GCAACAGAACTATAACTAGA+AGG | 0.447924 | 8.2:-33652497 | None:intergenic |
| AAATTGAAAGAAGCCACAAT+AGG | 0.448114 | 8.2:+33656115 | MS.gene056424:CDS |
| CCCGACGCTGGTCCCGTCTC+TGG | 0.451024 | 8.2:-33652408 | None:intergenic |
| CTTGACTTATGCTTCCGAAC+AGG | 0.453503 | 8.2:-33658591 | None:intergenic |
| GTTCACCTATGCCGCCGAAC+AGG | 0.456684 | 8.2:-33658750 | None:intergenic |
| GGCTGCCAAGGCCAGAGCAT+GGG | 0.462042 | 8.2:+33652115 | MS.gene056424:CDS |
| GAGTGAAGGAGCACAATGAT+AGG | 0.463777 | 8.2:+33656421 | MS.gene056424:CDS |
| ATCGTCTTCACTGAGAACTT+TGG | 0.463964 | 8.2:-33655575 | None:intergenic |
| ATGTTGATGTCAAGGATGAT+AGG | 0.464841 | 8.2:+33656490 | MS.gene056424:CDS |
| AATTGTAGCTGCTGTGTTAA+GGG | 0.467051 | 8.2:-33654799 | None:intergenic |
| CTTGATCTATGCTTCCGAAC+AGG | 0.467488 | 8.2:-33658624 | None:intergenic |
| TTTGCTCTCCGTTCCCACTT+TGG | 0.468180 | 8.2:-33650687 | None:intergenic |
| CTTGACCTATGCTTCCGAAC+AGG | 0.471205 | 8.2:-33658558 | None:intergenic |
| CTTGACCTATGCTTCCGAAC+AGG | 0.471205 | 8.2:-33658684 | None:intergenic |
| ATGCTTCCGAACAGGAGATC+TGG | 0.472876 | 8.2:-33658583 | None:intergenic |
| TAAAACATCTCCAGGAGAGC+TGG | 0.474026 | 8.2:-33655854 | None:intergenic |
| CAATGATAGGCATGGGGAGA+AGG | 0.476213 | 8.2:+33656434 | MS.gene056424:CDS |
| TGACCAGGAGTAGTAATAGA+AGG | 0.476320 | 8.2:-33654702 | None:intergenic |
| TAAAACCATTAAACCTATTG+TGG | 0.477394 | 8.2:-33656128 | None:intergenic |
| TGTTCTTGAGATGAGGAACT+TGG | 0.481712 | 8.2:-33654342 | None:intergenic |
| TGCTCTGGCAATCTTCCAGC+AGG | 0.483684 | 8.2:-33652188 | None:intergenic |
| GGATGAACTGATGGAATTGT+AGG | 0.484824 | 8.2:-33652464 | None:intergenic |
| ACTTGTCACCATCTCCAGTC+AGG | 0.485566 | 8.2:+33656828 | MS.gene056424:CDS |
| AATTGGCAGATGGAGCCTCC+TGG | 0.485782 | 8.2:-33652346 | None:intergenic |
| AGGGAATAGGGTGCACCATT+CGG | 0.488722 | 8.2:-33654780 | None:intergenic |
| GGTCATGTAGCAGCACCATA+TGG | 0.488813 | 8.2:+33654720 | MS.gene056424:CDS |
| ACCCTCTGCACCGGTTCCTA+AGG | 0.489380 | 8.2:+33655759 | MS.gene056424:CDS |
| TGATGTCAAGGATGATAGGA+AGG | 0.490397 | 8.2:+33656494 | MS.gene056424:CDS |
| CGTTTAGACCTGACTGGAGA+TGG | 0.490976 | 8.2:-33656836 | None:intergenic |
| GCTGCTGTGTTAAGGGAATA+GGG | 0.492533 | 8.2:-33654792 | None:intergenic |
| TGATGAGAGCAAAAGAAGAA+AGG | 0.494391 | 8.2:+33656344 | MS.gene056424:CDS |
| CTTGACCTATGCTTCCGAAC+TGG | 0.494642 | 8.2:-33658525 | None:intergenic |
| GAATTATCAAGAGAAGAATA+GGG | 0.494699 | 8.2:-33658317 | None:intergenic |
| CAACCACATTATTCGCCTGC+TGG | 0.495906 | 8.2:+33652173 | MS.gene056424:CDS |
| GATCACCTGTTCGGCGGCAT+AGG | 0.496081 | 8.2:+33658745 | MS.gene056424:CDS |
| AGGAGTTTCTACCACATGTT+CGG | 0.498634 | 8.2:+33650710 | MS.gene056424:CDS |
| GAGGGATGACTTGGATGTAT+TGG | 0.499469 | 8.2:-33654579 | None:intergenic |
| ACTGCAGGAAGCTGCGTTCG+AGG | 0.500095 | 8.2:+33656798 | MS.gene056424:intron |
| GAGGCAGCTTATACTTCAGA+TGG | 0.500726 | 8.2:+33652371 | MS.gene056424:CDS |
| ACCTCCTGCGGATGAACTGA+TGG | 0.502788 | 8.2:-33652473 | None:intergenic |
| CTTAGCATCAGCCCATGCTC+TGG | 0.503755 | 8.2:-33652126 | None:intergenic |
| AGGAATCAGAATCAAGGAAA+AGG | 0.504135 | 8.2:+33656460 | MS.gene056424:CDS |
| CCATTCGGTGGAATCGTTGG+AGG | 0.505439 | 8.2:-33654765 | None:intergenic |
| CTTGACCTATGCTTACGAAC+AGG | 0.505591 | 8.2:-33658657 | None:intergenic |
| CCATACGAATGAAGAAGATT+GGG | 0.506320 | 8.2:+33652094 | MS.gene056424:CDS |
| TTCTGCCGATCATCCAAAAG+TGG | 0.508372 | 8.2:+33655016 | MS.gene056424:CDS |
| CCAAGACCTAAAACATCTCC+AGG | 0.509678 | 8.2:-33655862 | None:intergenic |
| TTTAACTCGAAAGACATGTC+AGG | 0.509942 | 8.2:+33656147 | MS.gene056424:CDS |
| TGAGGATGAAGAGGAGGAGG+AGG | 0.514537 | 8.2:+33655130 | MS.gene056424:CDS |
| AGCTGAGGATGAAGAGGAGG+AGG | 0.515002 | 8.2:+33655127 | MS.gene056424:CDS |
| TAACCAACACCAGGTGCCAC+TGG | 0.515029 | 8.2:-33654552 | None:intergenic |
| TGTTAGCACTTCAAACCATA+AGG | 0.515709 | 8.2:+33655723 | MS.gene056424:CDS |
| AAGTGGGAACGGAGAGCAAA+AGG | 0.515849 | 8.2:+33650690 | MS.gene056424:CDS |
| ATTTCTTGATAGTGATGAGT+TGG | 0.517128 | 8.2:-33655980 | None:intergenic |
| TGTGGCCCTGAGGGATGACT+TGG | 0.518193 | 8.2:-33654588 | None:intergenic |
| CAAGATCCAAATCACCAGTT+CGG | 0.518196 | 8.2:+33658511 | MS.gene056424:CDS |
| GACACATATGGCCATGGTAG+CGG | 0.518326 | 8.2:+33650643 | MS.gene056424:CDS |
| AAGTCATCCCTCAGGGCCAC+AGG | 0.520469 | 8.2:+33654590 | MS.gene056424:CDS |
| TGAAGAAGATTGGGCTGCCA+AGG | 0.523456 | 8.2:+33652103 | MS.gene056424:CDS |
| GGGCTGCCAAGGCCAGAGCA+TGG | 0.526619 | 8.2:+33652114 | MS.gene056424:CDS |
| GGTCCAGGAAACCTTCCATA+TGG | 0.526735 | 8.2:-33654735 | None:intergenic |
| GCCTTAGGAACCGGTGCAGA+GGG | 0.527251 | 8.2:-33655760 | None:intergenic |
| TCAAGTGGTGAAGGCTCAGA+TGG | 0.527336 | 8.2:+33656699 | MS.gene056424:CDS |
| TTGTTTCAGCAAGTTACAGT+GGG | 0.528289 | 8.2:+33650606 | MS.gene056424:CDS |
| CAAGATCCAGATCACCTGTT+CGG | 0.528301 | 8.2:+33658610 | MS.gene056424:CDS |
| ATGTAGTTTCTAAAGATGCT+AGG | 0.528799 | 8.2:+33656076 | MS.gene056424:CDS |
| GCGAAATTCAGGACATTCCC+AGG | 0.529277 | 8.2:+33652328 | MS.gene056424:CDS |
| CGATGAGAACGCTTGCTATG+AGG | 0.530591 | 8.2:-33658284 | None:intergenic |
| TTTAGTTCCAGTTAAAGCAA+AGG | 0.534775 | 8.2:+33655795 | MS.gene056424:CDS |
| CCAATCTTCTTCATTCGTAT+GGG | 0.535249 | 8.2:-33652093 | None:intergenic |
| CAAGATCCAGATCTCCTGTT+CGG | 0.535402 | 8.2:+33658577 | MS.gene056424:CDS |
| CAAGATCAAGATCACCTGTT+CGG | 0.535588 | 8.2:+33658544 | MS.gene056424:CDS |
| GTTGGAGGGTGACCAGGTCC+AGG | 0.536337 | 8.2:-33654750 | None:intergenic |
| ATTGGCAGATGGAGCCTCCT+GGG | 0.536837 | 8.2:-33652345 | None:intergenic |
| GCACCATTCGGTGGAATCGT+TGG | 0.537051 | 8.2:-33654768 | None:intergenic |
| GAGAAGCTAGTGACCACGAC+AGG | 0.537315 | 8.2:+33656604 | MS.gene056424:CDS |
| ATACATCCAAGTCATCCCTC+AGG | 0.537759 | 8.2:+33654582 | MS.gene056424:CDS |
| CAAGATCCAGATCACCTGTT+CGG | 0.537884 | 8.2:+33658703 | MS.gene056424:CDS |
| CAAGATCCAGATCACCTGTT+CGG | 0.537884 | 8.2:+33658736 | MS.gene056424:CDS |
| GAAGAAACACTTGTGGTTGA+TGG | 0.538142 | 8.2:+33655038 | MS.gene056424:CDS |
| TGACAAGAGTTCTTCTGAGA+AGG | 0.538296 | 8.2:+33656272 | MS.gene056424:CDS |
| GGAATCGTTGGAGGGTGACC+AGG | 0.540265 | 8.2:-33654756 | None:intergenic |
| GCCTTCACCACTTGAATCAT+CGG | 0.542796 | 8.2:-33656691 | None:intergenic |
| GATCACCTGTTCGGAAGCAT+AGG | 0.547318 | 8.2:+33658553 | MS.gene056424:CDS |
| GATCACCTGTTCGGAAGCAT+AGG | 0.547318 | 8.2:+33658679 | MS.gene056424:CDS |
| AGGAGCACAATGATAGGCAT+GGG | 0.548928 | 8.2:+33656427 | MS.gene056424:CDS |
| GATCACCTGTTCGGCAGCAT+AGG | 0.549043 | 8.2:+33658712 | MS.gene056424:CDS |
| AAAGCAACGGATGATCATCT+AGG | 0.549544 | 8.2:+33656210 | MS.gene056424:CDS |
| AGGCAAAGGAATCAGAATCA+AGG | 0.549749 | 8.2:+33656454 | MS.gene056424:CDS |
| GATCTCTCCACCCTCTGCAC+CGG | 0.550032 | 8.2:+33655750 | MS.gene056424:CDS |
| ATAGCAAGCGTTCTCATCGC+GGG | 0.550556 | 8.2:+33658288 | MS.gene056424:CDS |
| GTCCTCCCATGTTGATGTCA+AGG | 0.551624 | 8.2:+33656482 | MS.gene056424:CDS |
| ATAGGTCAAGATCACCTGTT+CGG | 0.555313 | 8.2:+33658670 | MS.gene056424:CDS |
| CAGAAGAACTCTTGTCATGT+CGG | 0.555511 | 8.2:-33656266 | None:intergenic |
| TTTATAACCTGTGGCCCTGA+GGG | 0.556413 | 8.2:-33654597 | None:intergenic |
| TACCTTCGTTTAGACCTGAC+TGG | 0.558037 | 8.2:-33656842 | None:intergenic |
| TTCCCACTTTGGTGTTCACA+TGG | 0.558975 | 8.2:-33650676 | None:intergenic |
| GGCTGATGCTAAGTCTGCAA+TGG | 0.561151 | 8.2:+33652136 | MS.gene056424:CDS |
| TGTAGTTTCTAAAGATGCTA+GGG | 0.562424 | 8.2:+33656077 | MS.gene056424:CDS |
| AATCACCAGTTCGGAAGCAT+AGG | 0.563807 | 8.2:+33658520 | MS.gene056424:CDS |
| TCATGATAATGGGTTTGCTC+TGG | 0.563836 | 8.2:-33652203 | None:intergenic |
| AGCATCTTTAGAAACTACAT+TGG | 0.565563 | 8.2:-33656073 | None:intergenic |
| GCCGATGATTCAAGTGGTGA+AGG | 0.565656 | 8.2:+33656690 | MS.gene056424:CDS |
| TGGTTCTTCAATGAATAACT+GGG | 0.566749 | 8.2:+33654524 | MS.gene056424:CDS |
| TATGGAAGGTTTCCTGGACC+TGG | 0.567235 | 8.2:+33654738 | MS.gene056424:CDS |
| ATCAGCTGAGGATGAAGAGG+AGG | 0.568444 | 8.2:+33655124 | MS.gene056424:CDS |
| TTAACTCGAAAGACATGTCA+GGG | 0.569314 | 8.2:+33656148 | MS.gene056424:CDS |
| GCAAAGGAAACAGAGAATGA+TGG | 0.569366 | 8.2:+33655811 | MS.gene056424:CDS |
| GATCCTTCTATTACTACTCC+TGG | 0.570460 | 8.2:+33654699 | MS.gene056424:CDS |
| TAGATCAGCTGAGGATGAAG+AGG | 0.570783 | 8.2:+33655121 | MS.gene056424:CDS |
| AAGGAGCACAATGATAGGCA+TGG | 0.573014 | 8.2:+33656426 | MS.gene056424:CDS |
| TTAGGAACCGGTGCAGAGGG+TGG | 0.576066 | 8.2:-33655757 | None:intergenic |
| GTAGTTGCGCTCCGCTACCA+TGG | 0.581454 | 8.2:-33650654 | None:intergenic |
| AGGAACATACAAAGGACAAG+GGG | 0.581889 | 8.2:+33656562 | MS.gene056424:CDS |
| AATTCCATCAGTTCATCCGC+AGG | 0.585562 | 8.2:+33652469 | MS.gene056424:CDS |
| ATGGTATTGTTCTTGAGATG+AGG | 0.585666 | 8.2:-33654349 | None:intergenic |
| GGATGACTTGGATGTATTGG+TGG | 0.586562 | 8.2:-33654576 | None:intergenic |
| GCAGGCGAATAATGTGGTTG+TGG | 0.588429 | 8.2:-33652170 | None:intergenic |
| ACCAGAGACGGGACCAGCGT+CGG | 0.588617 | 8.2:+33652407 | MS.gene056424:CDS |
| TCGTCGTCAGTAAGCAGTAG+AGG | 0.589587 | 8.2:+33656642 | MS.gene056424:CDS |
| GTATCTTCGGTACCTCTATG+AGG | 0.590543 | 8.2:-33656528 | None:intergenic |
| AACGGATGATCATCTAGGAA+AGG | 0.592299 | 8.2:+33656215 | MS.gene056424:CDS |
| TACCATGTGAACACCAAAGT+GGG | 0.593048 | 8.2:+33650674 | MS.gene056424:CDS |
| ATGGAAGACACATATGGCCA+TGG | 0.594123 | 8.2:+33650637 | MS.gene056424:CDS |
| TGTGAACACCAAAGTGGGAA+CGG | 0.594194 | 8.2:+33650679 | MS.gene056424:CDS |
| TCTGAATTGCGTGACCAGAA+TGG | 0.594956 | 8.2:+33656180 | MS.gene056424:CDS |
| TGCCTTAGGAACCGGTGCAG+AGG | 0.595947 | 8.2:-33655761 | None:intergenic |
| AGCATCGTGTGATTGATCAA+TGG | 0.597589 | 8.2:-33656016 | None:intergenic |
| TATGGTGCTGCTACATGACC+AGG | 0.602824 | 8.2:-33654717 | None:intergenic |
| ATGTAGCAGCACCATATGGA+AGG | 0.604277 | 8.2:+33654724 | MS.gene056424:CDS |
| TGTTCCTGAACGTCCCAAGA+AGG | 0.606057 | 8.2:+33654866 | MS.gene056424:CDS |
| GGAGCAGAAAAGCCTCATAG+AGG | 0.610150 | 8.2:+33656516 | MS.gene056424:CDS |
| ATTCATACAGTACCAGAGAC+GGG | 0.614232 | 8.2:+33652396 | MS.gene056424:CDS |
| AGTAGTTGGATCCCCGACGC+TGG | 0.614363 | 8.2:-33652420 | None:intergenic |
| AAAGGAACATACAAAGGACA+AGG | 0.616533 | 8.2:+33656560 | MS.gene056424:CDS |
| GAATAGGGTGCACCATTCGG+TGG | 0.616683 | 8.2:-33654777 | None:intergenic |
| CATTCGGTGGAATCGTTGGA+GGG | 0.616970 | 8.2:-33654764 | None:intergenic |
| AATCACCTGTTCGTAAGCAT+AGG | 0.620727 | 8.2:+33658652 | MS.gene056424:CDS |
| CATTCATACAGTACCAGAGA+CGG | 0.621880 | 8.2:+33652395 | MS.gene056424:CDS |
| GAGGTACCGAAGATACTAGC+CGG | 0.623817 | 8.2:+33656535 | MS.gene056424:CDS |
| ATTTATAACCTGTGGCCCTG+AGG | 0.625981 | 8.2:-33654598 | None:intergenic |
| TACATCCAAGTCATCCCTCA+GGG | 0.626242 | 8.2:+33654583 | MS.gene056424:CDS |
| GAAGACGATCTGACTGCTGA+AGG | 0.626950 | 8.2:+33655589 | MS.gene056424:CDS |
| TAGGCATGGGGAGAAGGCAA+AGG | 0.628292 | 8.2:+33656440 | MS.gene056424:CDS |
| GCTGCCTCTAAATTGGCAGA+TGG | 0.628537 | 8.2:-33652356 | None:intergenic |
| GTTCTTCAATGAATAACTGG+GGG | 0.629955 | 8.2:+33654526 | MS.gene056424:CDS |
| TGAGTCAAAAGAAAGAGTGA+AGG | 0.630751 | 8.2:+33656407 | MS.gene056424:CDS |
| GATCCAGATCACCTGTTCGG+CGG | 0.632215 | 8.2:+33658739 | MS.gene056424:CDS |
| CATGCATTGATGGTTGCCCA+TGG | 0.633583 | 8.2:-33654368 | None:intergenic |
| TCATCTCAAGAACAATACCA+TGG | 0.634147 | 8.2:+33654351 | MS.gene056424:CDS |
| AGCCTGATGATGAATGAGAA+TGG | 0.634421 | 8.2:-33652271 | None:intergenic |
| TTTGTTTCAGCAAGTTACAG+TGG | 0.634648 | 8.2:+33650605 | MS.gene056424:CDS |
| CTTCCAGCAGGCGAATAATG+TGG | 0.635511 | 8.2:-33652176 | None:intergenic |
| TATCATCCTTGACATCAACA+TGG | 0.635716 | 8.2:-33656488 | None:intergenic |
| AGTCCCTAACTGGCTTAGAG+AGG | 0.636096 | 8.2:+33654965 | MS.gene056424:CDS |
| TCACTATCAAGAAATAGCAA+TGG | 0.640627 | 8.2:+33655988 | MS.gene056424:CDS |
| ATCATCCTTGACATCAACAT+GGG | 0.643393 | 8.2:-33656487 | None:intergenic |
| CAGTAGAGGTAGAACCAGCA+AGG | 0.644391 | 8.2:+33656656 | MS.gene056424:CDS |
| GGTTCTTCAATGAATAACTG+GGG | 0.647352 | 8.2:+33654525 | MS.gene056424:CDS |
| CATCTCAAGAACAATACCAT+GGG | 0.648988 | 8.2:+33654352 | MS.gene056424:CDS |
| GCACTTAGGTACCGAACATG+TGG | 0.650325 | 8.2:-33650721 | None:intergenic |
| CATAGCAAGCGTTCTCATCG+CGG | 0.651298 | 8.2:+33658287 | MS.gene056424:CDS |
| CTGCATAGATGGATCTACGA+AGG | 0.654023 | 8.2:-33652306 | None:intergenic |
| GAATGGCGCGGAGAAAGCAA+CGG | 0.654252 | 8.2:+33656197 | MS.gene056424:CDS |
| TCCATCAGTTCATCCGCAGG+AGG | 0.654749 | 8.2:+33652472 | MS.gene056424:CDS |
| CCTCCAACGATTCCACCGAA+TGG | 0.655078 | 8.2:+33654765 | MS.gene056424:CDS |
| AAGGAACATACAAAGGACAA+GGG | 0.655519 | 8.2:+33656561 | MS.gene056424:CDS |
| TGATAGACGAGTCAACAGAA+TGG | 0.656035 | 8.2:-33654413 | None:intergenic |
| CTCCAGTCAGGTCTAAACGA+AGG | 0.657936 | 8.2:+33656840 | MS.gene056424:CDS |
| TTTGAACATCGGTATAACGT+GGG | 0.659505 | 8.2:-33652247 | None:intergenic |
| ATCCTTGACATCAACATGGG+AGG | 0.659888 | 8.2:-33656484 | None:intergenic |
| AATCACGCCGATGATTCAAG+TGG | 0.663870 | 8.2:+33656684 | MS.gene056424:CDS |
| CATTGATAAATCATATGTGA+AGG | 0.668188 | 8.2:+33655061 | MS.gene056424:CDS |
| GATGTCAAGGATGATAGGAA+GGG | 0.668572 | 8.2:+33656495 | MS.gene056424:CDS |
| TAACTAGAAGGTACCTCCTG+CGG | 0.674285 | 8.2:-33652485 | None:intergenic |
| CTACCATGTGAACACCAAAG+TGG | 0.678770 | 8.2:+33650673 | MS.gene056424:CDS |
| TGATTCGTCTAGATCAGCTG+AGG | 0.682527 | 8.2:+33655112 | MS.gene056424:CDS |
| ATTGGTGGATAACCAACACC+AGG | 0.686354 | 8.2:-33654561 | None:intergenic |
| CAGAGACGGGACCAGCGTCG+GGG | 0.689976 | 8.2:+33652409 | MS.gene056424:CDS |
| GGAGCACAATGATAGGCATG+GGG | 0.693128 | 8.2:+33656428 | MS.gene056424:CDS |
| TTCTTCAATGAATAACTGGG+GGG | 0.699308 | 8.2:+33654527 | MS.gene056424:CDS |
| ATTGCGTGACCAGAATGGCG+CGG | 0.704592 | 8.2:+33656185 | MS.gene056424:CDS |
| AAAAGTGGAAGAAACACTTG+TGG | 0.706124 | 8.2:+33655031 | MS.gene056424:CDS |
| TGTTTCAGCAAGTTACAGTG+GGG | 0.712247 | 8.2:+33650607 | MS.gene056424:CDS |
| GGAACATACAAAGGACAAGG+GGG | 0.717310 | 8.2:+33656563 | MS.gene056424:CDS |
| TAACTCGAAAGACATGTCAG+GGG | 0.730959 | 8.2:+33656149 | MS.gene056424:CDS |
| TCACTGTCACGACTAAACGT+AGG | 0.747842 | 8.2:-33654465 | None:intergenic |
| AAATTCAGGACATTCCCAGG+AGG | 0.760682 | 8.2:+33652331 | MS.gene056424:CDS |
| TGGCTGTGAGATGCAAACGA+TGG | 0.764944 | 8.2:-33654393 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 33650587 | 33658770 | 33650587 | ID=MS.gene056424 |
| chr8.2 | mRNA | 33650587 | 33658770 | 33650587 | ID=MS.gene056424.t1;Parent=MS.gene056424 |
| chr8.2 | exon | 33650587 | 33650731 | 33650587 | ID=MS.gene056424.t1.exon1;Parent=MS.gene056424.t1 |
| chr8.2 | CDS | 33650587 | 33650731 | 33650587 | ID=cds.MS.gene056424.t1;Parent=MS.gene056424.t1 |
| chr8.2 | exon | 33652093 | 33652521 | 33652093 | ID=MS.gene056424.t1.exon2;Parent=MS.gene056424.t1 |
| chr8.2 | CDS | 33652093 | 33652521 | 33652093 | ID=cds.MS.gene056424.t1;Parent=MS.gene056424.t1 |
| chr8.2 | exon | 33654292 | 33654611 | 33654292 | ID=MS.gene056424.t1.exon3;Parent=MS.gene056424.t1 |
| chr8.2 | CDS | 33654292 | 33654611 | 33654292 | ID=cds.MS.gene056424.t1;Parent=MS.gene056424.t1 |
| chr8.2 | exon | 33654696 | 33654887 | 33654696 | ID=MS.gene056424.t1.exon4;Parent=MS.gene056424.t1 |
| chr8.2 | CDS | 33654696 | 33654887 | 33654696 | ID=cds.MS.gene056424.t1;Parent=MS.gene056424.t1 |
| chr8.2 | exon | 33654960 | 33655151 | 33654960 | ID=MS.gene056424.t1.exon5;Parent=MS.gene056424.t1 |
| chr8.2 | CDS | 33654960 | 33655151 | 33654960 | ID=cds.MS.gene056424.t1;Parent=MS.gene056424.t1 |
| chr8.2 | exon | 33655287 | 33655355 | 33655287 | ID=MS.gene056424.t1.exon6;Parent=MS.gene056424.t1 |
| chr8.2 | CDS | 33655287 | 33655355 | 33655287 | ID=cds.MS.gene056424.t1;Parent=MS.gene056424.t1 |
| chr8.2 | exon | 33655544 | 33655610 | 33655544 | ID=MS.gene056424.t1.exon7;Parent=MS.gene056424.t1 |
| chr8.2 | CDS | 33655544 | 33655610 | 33655544 | ID=cds.MS.gene056424.t1;Parent=MS.gene056424.t1 |
| chr8.2 | exon | 33655719 | 33656730 | 33655719 | ID=MS.gene056424.t1.exon8;Parent=MS.gene056424.t1 |
| chr8.2 | CDS | 33655719 | 33656730 | 33655719 | ID=cds.MS.gene056424.t1;Parent=MS.gene056424.t1 |
| chr8.2 | exon | 33656805 | 33656861 | 33656805 | ID=MS.gene056424.t1.exon9;Parent=MS.gene056424.t1 |
| chr8.2 | CDS | 33656805 | 33656861 | 33656805 | ID=cds.MS.gene056424.t1;Parent=MS.gene056424.t1 |
| chr8.2 | exon | 33658268 | 33658342 | 33658268 | ID=MS.gene056424.t1.exon10;Parent=MS.gene056424.t1 |
| chr8.2 | CDS | 33658268 | 33658342 | 33658268 | ID=cds.MS.gene056424.t1;Parent=MS.gene056424.t1 |
| chr8.2 | exon | 33658500 | 33658770 | 33658500 | ID=MS.gene056424.t1.exon11;Parent=MS.gene056424.t1 |
| chr8.2 | CDS | 33658500 | 33658770 | 33658500 | ID=cds.MS.gene056424.t1;Parent=MS.gene056424.t1 |
| Gene Sequence |
| Protein sequence |
