AlfalfaGEDB | MS.gene67182

M. sativa cultivar XinJiangDaYe / MS.gene67182

KEGG: -
GO: -
PFAM: PF08646.13

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67182.t1	XP_024628928.1	72.5	91	22	1	2	92	31	118	7.00E-29	136.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67182.t1	G7L9T4	73.9	88	20	1	2	89	20	104	1.1e-28	135.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049262	MS.gene67182	0.800579	1.35E-48	-1.69E-46
MS.gene049853	MS.gene67182	0.833592	4.88E-56	-1.69E-46
MS.gene052447	MS.gene67182	0.800635	1.31E-48	-1.69E-46
MS.gene054174	MS.gene67182	0.827681	1.37E-54	-1.69E-46
MS.gene054175	MS.gene67182	0.830427	2.95E-55	-1.69E-46
MS.gene054484	MS.gene67182	0.867541	1.27E-65	-1.69E-46
MS.gene055058	MS.gene67182	0.802518	5.40E-49	-1.69E-46
MS.gene058580	MS.gene67182	0.807148	5.82E-50	-1.69E-46
MS.gene059276	MS.gene67182	0.82884	7.19E-55	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67182.t1	MTR_8g104590	72.727	88	21	1	2	89	20	104	1.16e-41	135
MS.gene67182.t1	MTR_4g060433	71.429	84	24	0	3	86	32	115	5.89e-40	131
MS.gene67182.t1	MTR_1g105785	52.809	89	42	0	2	90	287	375	1.01e-29	110
MS.gene67182.t1	MTR_4g032565	49.425	87	44	0	6	92	35	121	7.98e-28	102
MS.gene67182.t1	MTR_4g032585	48.276	87	45	0	6	92	35	121	4.00e-27	100
MS.gene67182.t1	MTR_7g051400	47.191	89	47	0	2	90	265	353	9.07e-26	99.4
MS.gene67182.t1	MTR_7g110100	46.154	91	49	0	2	92	287	377	5.06e-25	97.1
MS.gene67182.t1	MTR_1g115520	48.837	86	14	1	2	87	5	60	6.05e-19	75.9
MS.gene67182.t1	MTR_0048s0080	44.872	78	33	1	11	88	160	227	1.43e-17	75.5
MS.gene67182.t1	MTR_1g492690	40.659	91	44	1	2	92	90	170	8.43e-15	68.2
MS.gene67182.t1	MTR_3g068135	49.020	51	26	0	8	58	80	130	7.34e-13	61.2
MS.gene67182.t1	MTR_4g011200	55.357	56	22	1	1	56	50	102	1.99e-12	58.9
MS.gene67182.t1	MTR_8g064300	47.917	48	25	0	45	92	115	162	1.28e-11	58.9
MS.gene67182.t1	MTR_3g046650	44.643	56	31	0	2	57	122	177	3.22e-11	57.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 0 sgRNAs with CRISPR-Local

Find 31 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GTAAAAACAAAAATTATATT+CGG	-	10371:7137-7156	MS.gene67182:intergenic	10.0%
!!	GATATAGTTGATTATTTGAT+AGG	+	10371:7175-7194	MS.gene67182:intron	20.0%
!	ATCAAAAAGAACATAAGTAG+TGG	-	10371:7238-7257	MS.gene67182:intergenic	25.0%
!	GGATAAACTTTGTTTACCTT+GGG	-	10371:7116-7135	MS.gene67182:intergenic	30.0%
!!!	ATTTTTGTTTTTACCATGCG+TGG	+	10371:7143-7162	MS.gene67182:intron	30.0%
	ACTATATGTGAGATCGAAAC+TGG	+	10371:6988-7007	MS.gene67182:CDS	35.0%
	AGTTTCGATCTCACATATAG+TGG	-	10371:6989-7008	MS.gene67182:intergenic	35.0%
	CACATTATGCCCAATAAACT+GGG	-	10371:7271-7290	MS.gene67182:intergenic	35.0%
	CTATATGTGAGATCGAAACT+GGG	+	10371:6989-7008	MS.gene67182:CDS	35.0%
	TATATGTGAGATCGAAACTG+GGG	+	10371:6990-7009	MS.gene67182:CDS	35.0%
	TATCAATACAATTCCACGCA+TGG	-	10371:7159-7178	MS.gene67182:intergenic	35.0%
!	AAGTTTTACACTTGCGACAA+CGG	-	10371:7080-7099	MS.gene67182:intergenic	35.0%
!	CGGATAAACTTTGTTTACCT+TGG	-	10371:7117-7136	MS.gene67182:intergenic	35.0%
!	TTATGTTCTTTTTGATCGCC+AGG	+	10371:7242-7261	MS.gene67182:CDS	35.0%
	CGCAAGTGTAAAACTTGCAA+GGG	+	10371:7084-7103	MS.gene67182:CDS	40.0%
	GCACATTATGCCCAATAAAC+TGG	-	10371:7272-7291	MS.gene67182:intergenic	40.0%
	TCGCAAGTGTAAAACTTGCA+AGG	+	10371:7083-7102	MS.gene67182:CDS	40.0%
!	AGATCGAAACTGGGGTTGAT+TGG	+	10371:6998-7017	MS.gene67182:CDS	45.0%
	ATGCACCCAGTGTGCTTCAT+TGG	+	10371:7032-7051	MS.gene67182:CDS	50.0%
	CAAGCTGCATGTCATCGTGA+TGG	+	10371:7200-7219	MS.gene67182:CDS	50.0%
	GCCAGGTGACCCAGTTTATT+GGG	+	10371:7259-7278	MS.gene67182:CDS	50.0%
	TCATTGGCCACCGTTGACAA+TGG	+	10371:7048-7067	MS.gene67182:CDS	50.0%
!	ACGGAGCACTCCATTGTCAA+CGG	-	10371:7061-7080	MS.gene67182:intergenic	50.0%
!!	TCATCGTGATGGACGACACA+GGG	+	10371:7211-7230	MS.gene67182:CDS	50.0%
	CGCCAGGTGACCCAGTTTAT+TGG	+	10371:7258-7277	MS.gene67182:CDS	55.0%
	GAGCACTCCATTGTCAACGG+TGG	-	10371:7058-7077	MS.gene67182:intergenic	55.0%
	GCCCAATAAACTGGGTCACC+TGG	-	10371:7263-7282	MS.gene67182:intergenic	55.0%
	GGTGGCCAATGAAGCACACT+GGG	-	10371:7040-7059	MS.gene67182:intergenic	55.0%
!	CTTGCAAGGGTGCAATCCCA+AGG	+	10371:7097-7116	MS.gene67182:CDS	55.0%
!!	GTCATCGTGATGGACGACAC+AGG	+	10371:7210-7229	MS.gene67182:CDS	55.0%
	CGGTGGCCAATGAAGCACAC+TGG	-	10371:7041-7060	MS.gene67182:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
10371	gene	6964	7317	6964	ID=MS.gene67182
10371	mRNA	6964	7317	6964	ID=MS.gene67182.t1;Parent=MS.gene67182
10371	exon	6964	7118	6964	ID=MS.gene67182.t1.exon1;Parent=MS.gene67182.t1
10371	CDS	6964	7118	6964	ID=cds.MS.gene67182.t1;Parent=MS.gene67182.t1
10371	exon	7197	7317	7197	ID=MS.gene67182.t1.exon2;Parent=MS.gene67182.t1
10371	CDS	7197	7317	7197	ID=cds.MS.gene67182.t1;Parent=MS.gene67182.t1

Gene Sequence	>MS.gene67182 ATCTGTCAAGGTTCGGTGCTTGCCACTATATGTGAGATCGAAACTGGGGTTGATTGGTACTTTCGATCATGCACCCAGTGTGCTTCATTGGCCACCGTTGACAATGGAGTGCTCCGTTGTCGCAAGTGTAAAACTTGCAAGGGTGCAATCCCAAGGTAAACAAAGTTTATCCGAATATAATTTTTGTTTTTACCATGCGTGGAATTGTATTGATATAGTTGATTATTTGATAGGTTCAAGCTGCATGTCATCGTGATGGACGACACAGGGTCCACTACTTATGTTCTTTTTGATCGCCAGGTGACCCAGTTTATTGGGCATAATGTGCAAGACTTGATCAATGAACGTGATGAG
Protein sequence	>MS.gene67182.t1 ICQGSVLATICEIETGVDWYFRSCTQCASLATVDNGVLRCRKCKTCKGAIPRFKLHVIVMDDTGSTTYVLFDRQVTQFIGHNVQDLINERDE