Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67690.t1 | XP_003612249.1 | 99.3 | 289 | 2 | 0 | 1 | 289 | 1 | 289 | 1.80E-163 | 585.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67690.t1 | F4JZ24 | 76.4 | 288 | 67 | 1 | 1 | 288 | 2 | 288 | 2.7e-128 | 459.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67690.t1 | G7JYR0 | 99.3 | 289 | 2 | 0 | 1 | 289 | 1 | 289 | 1.3e-163 | 585.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049411 | MS.gene67690 | 0.827741 | 1.32E-54 | -1.69E-46 |
| MS.gene050752 | MS.gene67690 | 0.828337 | 9.51E-55 | -1.69E-46 |
| MS.gene050838 | MS.gene67690 | 0.836521 | 8.91E-57 | -1.69E-46 |
| MS.gene050955 | MS.gene67690 | 0.836161 | 1.10E-56 | -1.69E-46 |
| MS.gene051234 | MS.gene67690 | 0.85423 | 1.41E-61 | -1.69E-46 |
| MS.gene051642 | MS.gene67690 | 0.801337 | 9.44E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene67690 | 0.816023 | 6.85E-52 | -1.69E-46 |
| MS.gene052947 | MS.gene67690 | 0.818692 | 1.72E-52 | -1.69E-46 |
| MS.gene053952 | MS.gene67690 | 0.80824 | 3.41E-50 | -1.69E-46 |
| MS.gene054403 | MS.gene67690 | 0.829275 | 5.64E-55 | -1.69E-46 |
| MS.gene056075 | MS.gene67690 | 0.80178 | 7.66E-49 | -1.69E-46 |
| MS.gene059227 | MS.gene67690 | 0.827926 | 1.19E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67690.t1 | MTR_5g022960 | 99.308 | 289 | 2 | 0 | 1 | 289 | 1 | 289 | 0.0 | 596 |
| MS.gene67690.t1 | MTR_5g022960 | 99.015 | 203 | 2 | 0 | 1 | 203 | 1 | 203 | 4.98e-149 | 416 |
| MS.gene67690.t1 | MTR_3g114670 | 65.398 | 289 | 91 | 2 | 1 | 289 | 1 | 280 | 1.81e-143 | 404 |
| MS.gene67690.t1 | MTR_8g074810 | 69.072 | 291 | 75 | 4 | 1 | 289 | 1 | 278 | 2.52e-143 | 404 |
| MS.gene67690.t1 | MTR_8g074880 | 68.045 | 266 | 83 | 1 | 23 | 288 | 62 | 325 | 3.58e-136 | 388 |
| MS.gene67690.t1 | MTR_8g074890 | 64.460 | 287 | 90 | 2 | 1 | 287 | 1 | 275 | 5.71e-135 | 383 |
| MS.gene67690.t1 | MTR_8g074830 | 64.706 | 289 | 90 | 3 | 1 | 287 | 1 | 279 | 4.99e-130 | 370 |
| MS.gene67690.t1 | MTR_8g074870 | 71.171 | 222 | 50 | 2 | 66 | 287 | 16 | 223 | 4.60e-116 | 333 |
| MS.gene67690.t1 | MTR_3g114610 | 62.963 | 216 | 75 | 1 | 73 | 288 | 91 | 301 | 1.20e-97 | 289 |
| MS.gene67690.t1 | MTR_3g114590 | 65.278 | 216 | 69 | 1 | 73 | 288 | 59 | 268 | 1.36e-97 | 299 |
| MS.gene67690.t1 | MTR_3g114590 | 57.360 | 197 | 57 | 3 | 95 | 288 | 293 | 465 | 3.87e-64 | 212 |
| MS.gene67690.t1 | MTR_6g009440 | 56.872 | 211 | 90 | 1 | 78 | 288 | 51 | 260 | 1.08e-85 | 259 |
| MS.gene67690.t1 | MTR_2g020800 | 56.481 | 216 | 86 | 2 | 78 | 287 | 40 | 253 | 1.01e-83 | 254 |
| MS.gene67690.t1 | MTR_2g020800 | 57.009 | 214 | 86 | 2 | 78 | 287 | 40 | 251 | 1.97e-83 | 253 |
| MS.gene67690.t1 | MTR_4g118560 | 53.241 | 216 | 91 | 2 | 78 | 287 | 37 | 248 | 3.73e-79 | 242 |
| MS.gene67690.t1 | MTR_1g116810 | 51.101 | 227 | 95 | 4 | 65 | 283 | 58 | 276 | 1.01e-70 | 220 |
| MS.gene67690.t1 | MTR_4g095370 | 48.571 | 210 | 97 | 7 | 79 | 283 | 86 | 289 | 8.55e-62 | 197 |
| MS.gene67690.t1 | MTR_5g016090 | 45.192 | 208 | 107 | 4 | 79 | 283 | 84 | 287 | 6.93e-55 | 179 |
| MS.gene67690.t1 | MTR_3g051200 | 56.296 | 135 | 57 | 2 | 93 | 226 | 25 | 158 | 3.12e-45 | 150 |
| MS.gene67690.t1 | MTR_6g053720 | 30.038 | 263 | 152 | 9 | 28 | 284 | 4 | 240 | 5.11e-33 | 123 |
| MS.gene67690.t1 | MTR_4g095370 | 43.443 | 122 | 64 | 4 | 79 | 196 | 86 | 206 | 1.76e-25 | 101 |
| MS.gene67690.t1 | MTR_4g095370 | 42.276 | 123 | 66 | 4 | 79 | 197 | 86 | 207 | 1.99e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67690.t1 | AT5G66060 | 76.389 | 288 | 67 | 1 | 1 | 288 | 2 | 288 | 6.28e-169 | 469 |
| MS.gene67690.t1 | AT1G20270 | 70.833 | 288 | 82 | 2 | 1 | 288 | 1 | 286 | 1.42e-156 | 438 |
| MS.gene67690.t1 | AT2G17720 | 71.127 | 284 | 82 | 0 | 5 | 288 | 7 | 290 | 2.68e-144 | 407 |
| MS.gene67690.t1 | AT4G35810 | 72.332 | 253 | 67 | 1 | 38 | 287 | 37 | 289 | 1.45e-138 | 392 |
| MS.gene67690.t1 | AT4G35810 | 72.332 | 253 | 67 | 1 | 38 | 287 | 37 | 289 | 1.45e-138 | 392 |
| MS.gene67690.t1 | AT5G66060 | 72.131 | 244 | 65 | 2 | 1 | 244 | 2 | 242 | 7.03e-129 | 366 |
| MS.gene67690.t1 | AT1G20270 | 66.010 | 203 | 67 | 2 | 1 | 203 | 1 | 201 | 1.24e-96 | 283 |
| MS.gene67690.t1 | AT1G20270 | 66.010 | 203 | 67 | 2 | 1 | 203 | 1 | 201 | 1.24e-96 | 283 |
| MS.gene67690.t1 | AT3G28480 | 46.415 | 265 | 138 | 3 | 24 | 288 | 5 | 265 | 4.11e-83 | 253 |
| MS.gene67690.t1 | AT5G18900 | 55.189 | 212 | 93 | 1 | 78 | 287 | 37 | 248 | 1.42e-81 | 248 |
| MS.gene67690.t1 | AT3G06300 | 55.399 | 213 | 91 | 2 | 78 | 287 | 38 | 249 | 2.64e-80 | 245 |
| MS.gene67690.t1 | AT3G28490 | 53.555 | 211 | 96 | 2 | 78 | 287 | 32 | 241 | 6.91e-78 | 238 |
| MS.gene67690.t1 | AT4G35820 | 57.000 | 200 | 56 | 3 | 75 | 266 | 85 | 262 | 8.65e-73 | 225 |
| MS.gene67690.t1 | AT3G28480 | 43.590 | 273 | 142 | 5 | 24 | 288 | 5 | 273 | 1.31e-72 | 226 |
| MS.gene67690.t1 | AT2G43080 | 54.502 | 211 | 80 | 4 | 79 | 283 | 78 | 278 | 4.83e-72 | 223 |
| MS.gene67690.t1 | AT4G33910 | 39.726 | 292 | 149 | 10 | 7 | 283 | 3 | 282 | 1.20e-57 | 187 |
| MS.gene67690.t1 | AT2G23096 | 35.793 | 271 | 164 | 5 | 20 | 287 | 10 | 273 | 1.95e-49 | 165 |
| MS.gene67690.t1 | AT4G25600 | 32.673 | 202 | 110 | 5 | 81 | 282 | 62 | 237 | 6.32e-27 | 107 |
| MS.gene67690.t1 | AT2G43080 | 52.041 | 98 | 45 | 1 | 79 | 174 | 78 | 175 | 3.69e-25 | 99.8 |
| MS.gene67690.t1 | AT4G25600 | 31.980 | 197 | 108 | 5 | 86 | 282 | 6 | 176 | 3.65e-24 | 98.2 |
| MS.gene67690.t1 | AT4G25600 | 31.980 | 197 | 108 | 5 | 86 | 282 | 3 | 173 | 3.80e-24 | 97.8 |
| MS.gene67690.t1 | AT4G25600 | 31.980 | 197 | 108 | 5 | 86 | 282 | 15 | 185 | 4.55e-24 | 98.2 |
Find 61 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACGAGCTCTGGAACATTTC+TGG | 0.221604 | 5.2:-13937472 | MS.gene67690:CDS |
| GGTGGTTGTCCGGTAATTAA+AGG | 0.264632 | 5.2:-13936524 | MS.gene67690:CDS |
| CACTTATTTCCTTTAATTAC+CGG | 0.297860 | 5.2:+13936515 | None:intergenic |
| GTTACCTATCGACGGTGTTA+TGG | 0.331035 | 5.2:+13939725 | None:intergenic |
| AGTAAAGCATCACCTCTCTT+TGG | 0.342180 | 5.2:+13936734 | None:intergenic |
| GAGGTAAGATCGTTGGGTTT+AGG | 0.404374 | 5.2:+13939754 | None:intergenic |
| GATGAATATAACACAAAGAA+TGG | 0.412374 | 5.2:-13937001 | MS.gene67690:CDS |
| CTGAAATTCCCCTTAGCAGC+AGG | 0.415882 | 5.2:+13936815 | None:intergenic |
| ATGAATATAACACAAAGAAT+GGG | 0.423938 | 5.2:-13937000 | MS.gene67690:CDS |
| TTCATTGACGCGGATCCATT+TGG | 0.424011 | 5.2:+13936484 | None:intergenic |
| CAAGTTCTACATTATGAAGT+TGG | 0.432869 | 5.2:-13937058 | MS.gene67690:CDS |
| TGTAGAGTGCGTACGAGCTC+TGG | 0.433588 | 5.2:-13937483 | MS.gene67690:intron |
| GCTCTGGAACATTTCTGGCC+AGG | 0.442526 | 5.2:-13937467 | MS.gene67690:CDS |
| ATTAGAAATGACGATGAAGA+AGG | 0.462708 | 5.2:-13939628 | MS.gene67690:intron |
| ATAACTTTCAGGTGGTTGTC+CGG | 0.466448 | 5.2:-13936534 | MS.gene67690:intron |
| AAATGACGATGAAGAAGGTA+AGG | 0.469056 | 5.2:-13939623 | MS.gene67690:CDS |
| CAGATATTCACATTCCTCCT+TGG | 0.476063 | 5.2:+13937697 | None:intergenic |
| CTCTGGAACATTTCTGGCCA+GGG | 0.477488 | 5.2:-13937466 | MS.gene67690:CDS |
| AAACGAGAAGAATGAGGATA+AGG | 0.480852 | 5.2:+13939815 | None:intergenic |
| ACAGTTGTTGATAGCGAGAC+TGG | 0.480980 | 5.2:-13937641 | MS.gene67690:CDS |
| ACAATGGAGGTAAGATCGTT+GGG | 0.491811 | 5.2:+13939748 | None:intergenic |
| GACAGTGTTCCCTGCTGCTA+AGG | 0.496932 | 5.2:-13936825 | MS.gene67690:CDS |
| GACAATGGAGGTAAGATCGT+TGG | 0.498696 | 5.2:+13939747 | None:intergenic |
| ACTGTTGACTTGTGCATGCT+CGG | 0.501373 | 5.2:+13937659 | None:intergenic |
| GATGCATCTAAAGTTGCATC+CGG | 0.502828 | 5.2:+13936695 | None:intergenic |
| TATAATGAGCTTTCTGATTG+TGG | 0.504044 | 5.2:-13936779 | MS.gene67690:CDS |
| ATAAGTGGTCAAGTACCAAA+TGG | 0.506402 | 5.2:-13936499 | MS.gene67690:CDS |
| AGTGGGTTGAAGTTGTATCA+TGG | 0.519666 | 5.2:-13939594 | MS.gene67690:CDS |
| TTAGATGCATCAAGCTTGCA+TGG | 0.521772 | 5.2:-13936683 | MS.gene67690:intron |
| TACAGTACAGATGTTGAAGA+AGG | 0.524814 | 5.2:-13936854 | MS.gene67690:intron |
| ATAATGAGCTTTCTGATTGT+GGG | 0.530607 | 5.2:-13936778 | MS.gene67690:CDS |
| AAGAAGGTAAGGGTGAACAG+TGG | 0.530724 | 5.2:-13939612 | MS.gene67690:CDS |
| ACAGTGTTCCCTGCTGCTAA+GGG | 0.531155 | 5.2:-13936824 | MS.gene67690:CDS |
| TTGTGATACACAAAAGCTCT+AGG | 0.533206 | 5.2:+13939568 | None:intergenic |
| CTGGAAAGAGCAAAGACAGC+AGG | 0.539433 | 5.2:-13937622 | MS.gene67690:intron |
| CACAATCTTATCACGTCCCC+TGG | 0.546111 | 5.2:+13937449 | None:intergenic |
| GTGGGTTGAAGTTGTATCAT+GGG | 0.551409 | 5.2:-13939593 | MS.gene67690:CDS |
| AGAAGGTAAGGGTGAACAGT+GGG | 0.565306 | 5.2:-13939611 | MS.gene67690:CDS |
| ACAGTACAGATGTTGAAGAA+GGG | 0.576370 | 5.2:-13936853 | MS.gene67690:intron |
| TGAAATTCCCCTTAGCAGCA+GGG | 0.595044 | 5.2:+13936816 | None:intergenic |
| TTCCGAAAACGAGAAGAATG+AGG | 0.600315 | 5.2:+13939809 | None:intergenic |
| CGGTAATTAAAGGAAATAAG+TGG | 0.603669 | 5.2:-13936514 | MS.gene67690:CDS |
| CAGTACAGATGTTGAAGAAG+GGG | 0.604680 | 5.2:-13936852 | MS.gene67690:CDS |
| TGAATATAACACAAAGAATG+GGG | 0.607097 | 5.2:-13936999 | MS.gene67690:CDS |
| GATTGGAAGAAGGAATGGAG+AGG | 0.608811 | 5.2:+13939785 | None:intergenic |
| CTTTCAATTAAGCCAAAGAG+AGG | 0.612559 | 5.2:-13936746 | MS.gene67690:CDS |
| CAATATACAGAGCACGGTGA+AGG | 0.613394 | 5.2:-13937085 | MS.gene67690:intron |
| ATCGACGGTGTTATGGACAA+TGG | 0.613757 | 5.2:+13939732 | None:intergenic |
| TTGTCCATAACACCGTCGAT+AGG | 0.625451 | 5.2:-13939729 | MS.gene67690:intron |
| CAGTGTTCCCTGCTGCTAAG+GGG | 0.641768 | 5.2:-13936823 | MS.gene67690:CDS |
| AATGACGATGAAGAAGGTAA+GGG | 0.648877 | 5.2:-13939622 | MS.gene67690:CDS |
| TCTGGAACATTTCTGGCCAG+GGG | 0.649054 | 5.2:-13937465 | MS.gene67690:CDS |
| TCAAGAAAGTAGTCATAGTG+AGG | 0.653721 | 5.2:+13937022 | None:intergenic |
| GAATATAACACAAAGAATGG+GGG | 0.666678 | 5.2:-13936998 | MS.gene67690:CDS |
| GGAATTTCAGTAATGTGCCG+TGG | 0.673959 | 5.2:-13936802 | MS.gene67690:CDS |
| ACAGAAACGTTACCTATCGA+CGG | 0.675054 | 5.2:+13939717 | None:intergenic |
| AGTACAGATGTTGAAGAAGG+GGG | 0.685290 | 5.2:-13936851 | MS.gene67690:CDS |
| GGGGACGTGATAAGATTGTG+AGG | 0.685334 | 5.2:-13937446 | MS.gene67690:CDS |
| GACGGTGTTATGGACAATGG+AGG | 0.705646 | 5.2:+13939735 | None:intergenic |
| TCAGAAAGCTCATTATACCA+CGG | 0.716313 | 5.2:+13936785 | None:intergenic |
| ATAATCTGAGTAGACCAAGG+AGG | 0.746271 | 5.2:-13937711 | MS.gene67690:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAGAAATTAATTTTG+TGG | - | chr5.2:13938322-13938341 | MS.gene67690:intron | 10.0% |
| !!! | AAAAAAGAAATTAATTTTGT+GGG | - | chr5.2:13938323-13938342 | MS.gene67690:intron | 10.0% |
| !!! | ATATGCTATTTATATATTAA+GGG | - | chr5.2:13937098-13937117 | MS.gene67690:intron | 10.0% |
| !!! | ATTATTTTTGTAAGTTATAT+TGG | + | chr5.2:13937250-13937269 | None:intergenic | 10.0% |
| !!! | TATATGCTATTTATATATTA+AGG | - | chr5.2:13937097-13937116 | MS.gene67690:intron | 10.0% |
| !! | ATCATTAACAAAAAAAAAAG+CGG | + | chr5.2:13936708-13936727 | None:intergenic | 15.0% |
| !! | ATGAAATAGAATAAAAATTG+GGG | - | chr5.2:13937990-13938009 | MS.gene67690:intron | 15.0% |
| !! | CATGAAATAGAATAAAAATT+GGG | - | chr5.2:13937989-13938008 | MS.gene67690:intron | 15.0% |
| !! | TAATATTACACAATCATTAA+GGG | - | chr5.2:13938366-13938385 | MS.gene67690:intron | 15.0% |
| !!! | AAAAAAAAGAGTTAATTTTG+TGG | - | chr5.2:13938121-13938140 | MS.gene67690:intron | 15.0% |
| !!! | AAAAAAAGAGTTAATTTTGT+GGG | - | chr5.2:13938122-13938141 | MS.gene67690:intron | 15.0% |
| !!! | AAAAAAGTATATATAATAGG+TGG | + | chr5.2:13939009-13939028 | None:intergenic | 15.0% |
| !!! | AAAAAGAAATTAATTTTGTG+GGG | - | chr5.2:13938324-13938343 | MS.gene67690:intron | 15.0% |
| !!! | AAAAAGTATATATAATAGGT+GGG | + | chr5.2:13939008-13939027 | None:intergenic | 15.0% |
| !!! | AAGTTAGTTTTTTGTTTTAA+AGG | - | chr5.2:13937819-13937838 | MS.gene67690:intron | 15.0% |
| !!! | ATGAACTATATATATGTTTT+TGG | - | chr5.2:13936932-13936951 | MS.gene67690:intron | 15.0% |
| !!! | ATTATTCAAGTTTATCTTTT+AGG | + | chr5.2:13937377-13937396 | None:intergenic | 15.0% |
| !!! | TTATTCAAGTTTATCTTTTA+GGG | + | chr5.2:13937376-13937395 | None:intergenic | 15.0% |
| !! | AAAAAACACTATTCCAAATT+AGG | + | chr5.2:13937853-13937872 | None:intergenic | 20.0% |
| !! | ACTAAATTCATATTCAAACA+TGG | + | chr5.2:13938537-13938556 | None:intergenic | 20.0% |
| !! | AGAAAGAAATATGTAAAGAT+GGG | + | chr5.2:13938870-13938889 | None:intergenic | 20.0% |
| !! | ATGAATATAACACAAAGAAT+GGG | - | chr5.2:13939376-13939395 | MS.gene67690:intron | 20.0% |
| !! | CTAATATTACACAATCATTA+AGG | - | chr5.2:13938365-13938384 | MS.gene67690:intron | 20.0% |
| !! | CTTGAATAATTGCTTATATA+AGG | - | chr5.2:13937387-13937406 | MS.gene67690:intron | 20.0% |
| !! | GCATGAAATAGAATAAAAAT+TGG | - | chr5.2:13937988-13938007 | MS.gene67690:intron | 20.0% |
| !! | TAGAAAGAAATATGTAAAGA+TGG | + | chr5.2:13938871-13938890 | None:intergenic | 20.0% |
| !! | TATGAATCGCATTAATAAAA+TGG | + | chr5.2:13936897-13936916 | None:intergenic | 20.0% |
| !! | TGAAATAGAATAAAAATTGG+GGG | - | chr5.2:13937991-13938010 | MS.gene67690:intron | 20.0% |
| !! | TTACAAAAAGAGTTTATTTC+TGG | - | chr5.2:13939059-13939078 | MS.gene67690:intron | 20.0% |
| !!! | AAAAAAGAGTTAATTTTGTG+GGG | - | chr5.2:13938123-13938142 | MS.gene67690:intron | 20.0% |
| !!! | AAAACTATTTGTGTTTTGAT+TGG | - | chr5.2:13938460-13938479 | MS.gene67690:intron | 20.0% |
| !!! | AAAAGTATATATAATAGGTG+GGG | + | chr5.2:13939007-13939026 | None:intergenic | 20.0% |
| !!! | ATAAGTTTTGTGAAAATGTT+TGG | - | chr5.2:13937158-13937177 | MS.gene67690:intron | 20.0% |
| !!! | TATATTTCATAAGCTGTTTT+CGG | - | chr5.2:13937487-13937506 | MS.gene67690:intron | 20.0% |
| ! | AATAAATATTAATGCTCCAC+AGG | + | chr5.2:13938593-13938612 | None:intergenic | 25.0% |
| ! | AATAAGTTGTTTACACAAAC+AGG | - | chr5.2:13937753-13937772 | MS.gene67690:intron | 25.0% |
| ! | AATATGAATTTAGTGTGATG+TGG | - | chr5.2:13938543-13938562 | MS.gene67690:intron | 25.0% |
| ! | ACACACTAATAATAGAAGTA+GGG | - | chr5.2:13938172-13938191 | MS.gene67690:intron | 25.0% |
| ! | ATAAGTTGTTTACACAAACA+GGG | - | chr5.2:13937754-13937773 | MS.gene67690:intron | 25.0% |
| ! | ATATTGCATCCTATATGTTA+AGG | - | chr5.2:13937918-13937937 | MS.gene67690:intron | 25.0% |
| ! | ATTCAAACATGGAATTCAAA+CGG | + | chr5.2:13938526-13938545 | None:intergenic | 25.0% |
| ! | CACTTATTTCCTTTAATTAC+CGG | + | chr5.2:13939864-13939883 | None:intergenic | 25.0% |
| ! | CATAATAAAAGAAAGCTAGA+TGG | + | chr5.2:13939210-13939229 | None:intergenic | 25.0% |
| ! | CTAAGTAGATAGTTAAACAA+AGG | + | chr5.2:13938428-13938447 | None:intergenic | 25.0% |
| ! | GAAAGAAATATGTAAAGATG+GGG | + | chr5.2:13938869-13938888 | None:intergenic | 25.0% |
| ! | GATGAATATAACACAAAGAA+TGG | - | chr5.2:13939375-13939394 | MS.gene67690:intron | 25.0% |
| ! | TACACACTAATAATAGAAGT+AGG | - | chr5.2:13938171-13938190 | MS.gene67690:intron | 25.0% |
| ! | TATAAGATGTTTATCCAAAC+AGG | - | chr5.2:13937350-13937369 | MS.gene67690:intron | 25.0% |
| ! | TATTGCATCCTATATGTTAA+GGG | - | chr5.2:13937919-13937938 | MS.gene67690:intron | 25.0% |
| ! | TGAATATAACACAAAGAATG+GGG | - | chr5.2:13939377-13939396 | MS.gene67690:intron | 25.0% |
| ! | TGTTAACTGAAAATATTCAG+TGG | + | chr5.2:13939184-13939203 | None:intergenic | 25.0% |
| ! | TTACTAACTTCAATTTGTCT+TGG | - | chr5.2:13939453-13939472 | MS.gene67690:intron | 25.0% |
| !! | ACCTAACAAGTTAATTTTGT+GGG | - | chr5.2:13938288-13938307 | MS.gene67690:intron | 25.0% |
| !! | ATTTCTCTGTTTTACATGTT+TGG | - | chr5.2:13937033-13937052 | MS.gene67690:CDS | 25.0% |
| !! | TCACATAACAAGAATTTTGT+GGG | - | chr5.2:13938091-13938110 | MS.gene67690:intron | 25.0% |
| !! | TTCACATAACAAGAATTTTG+TGG | - | chr5.2:13938090-13938109 | MS.gene67690:intron | 25.0% |
| !! | TTGTTTTCTCGTTATGTTTT+TGG | - | chr5.2:13936972-13936991 | MS.gene67690:CDS | 25.0% |
| !! | TTTTGTGTATCACAATTTTC+TGG | - | chr5.2:13936816-13936835 | MS.gene67690:CDS | 25.0% |
| !!! | CATCTAGCTTTCTTTTATTA+TGG | - | chr5.2:13939208-13939227 | MS.gene67690:intron | 25.0% |
| !!! | TTTTAATTACTTGTGGTTCT+TGG | - | chr5.2:13938391-13938410 | MS.gene67690:intron | 25.0% |
| AAGTTATCATGCTAAGCTTA+TGG | + | chr5.2:13937520-13937539 | None:intergenic | 30.0% | |
| ACACTAATAATAGAAGTAGG+GGG | - | chr5.2:13938174-13938193 | MS.gene67690:intron | 30.0% | |
| ACACTTTAACAGAGAAAGAT+AGG | + | chr5.2:13938791-13938810 | None:intergenic | 30.0% | |
| AGAACTTATGAAAACAGCTT+AGG | - | chr5.2:13937182-13937201 | MS.gene67690:intron | 30.0% | |
| AGCATATAGATAAGCACTTA+TGG | + | chr5.2:13937085-13937104 | None:intergenic | 30.0% | |
| ATAATGAGCTTTCTGATTGT+GGG | - | chr5.2:13939598-13939617 | MS.gene67690:CDS | 30.0% | |
| ATTAGAAATGACGATGAAGA+AGG | - | chr5.2:13936748-13936767 | MS.gene67690:CDS | 30.0% | |
| ATTGGTTAAATGATGCTTGA+TGG | - | chr5.2:13938478-13938497 | MS.gene67690:intron | 30.0% | |
| CAAGTTCTACATTATGAAGT+TGG | - | chr5.2:13939318-13939337 | MS.gene67690:intron | 30.0% | |
| CACACTAATAATAGAAGTAG+GGG | - | chr5.2:13938173-13938192 | MS.gene67690:intron | 30.0% | |
| CGGTAATTAAAGGAAATAAG+TGG | - | chr5.2:13939862-13939881 | MS.gene67690:CDS | 30.0% | |
| GAATATAACACAAAGAATGG+GGG | - | chr5.2:13939378-13939397 | MS.gene67690:intron | 30.0% | |
| GCTATATGCTTAAAAATAGC+AGG | - | chr5.2:13937625-13937644 | MS.gene67690:CDS | 30.0% | |
| TAATCATGTGTGACATTGTT+TGG | - | chr5.2:13937439-13937458 | MS.gene67690:CDS | 30.0% | |
| TATAATGAGCTTTCTGATTG+TGG | - | chr5.2:13939597-13939616 | MS.gene67690:CDS | 30.0% | |
| TTATATATTAAGGGTCGCTT+TGG | - | chr5.2:13937107-13937126 | MS.gene67690:intron | 30.0% | |
| TTCAAACATGGAATTCAAAC+GGG | + | chr5.2:13938525-13938544 | None:intergenic | 30.0% | |
| TTCAGCTAAACTTTAGTGAT+TGG | + | chr5.2:13938646-13938665 | None:intergenic | 30.0% | |
| ! | AAACCTTGTTTATGCATATC+AGG | + | chr5.2:13938055-13938074 | None:intergenic | 30.0% |
| ! | AACCTTATTTATGCCATATC+AGG | + | chr5.2:13938247-13938266 | None:intergenic | 30.0% |
| ! | CACCTAACAAGTTAATTTTG+TGG | - | chr5.2:13938287-13938306 | MS.gene67690:intron | 30.0% |
| !! | AAGGGTCTTTTAATTACTTG+TGG | - | chr5.2:13938384-13938403 | MS.gene67690:intron | 30.0% |
| !! | AAGTTTTGTATTCATTGACG+CGG | + | chr5.2:13939905-13939924 | None:intergenic | 30.0% |
| !! | ACCCACAAAATTAACTTGTT+AGG | + | chr5.2:13938292-13938311 | None:intergenic | 30.0% |
| !! | CTGTTTTCTTGATAACTTTC+AGG | - | chr5.2:13939831-13939850 | MS.gene67690:CDS | 30.0% |
| !! | GACTTTACTTTTATTCCTGT+AGG | - | chr5.2:13938974-13938993 | MS.gene67690:intron | 30.0% |
| !! | TTTTCTTGATAACTTTCAGG+TGG | - | chr5.2:13939834-13939853 | MS.gene67690:CDS | 30.0% |
| AAACGAGAAGAATGAGGATA+AGG | + | chr5.2:13936564-13936583 | None:intergenic | 35.0% | |
| AAACTTTAGTGATTGGAAGG+TGG | + | chr5.2:13938639-13938658 | None:intergenic | 35.0% | |
| AAAGGAAACACGTCCTAATT+TGG | - | chr5.2:13937837-13937856 | MS.gene67690:intron | 35.0% | |
| AAATGACGATGAAGAAGGTA+AGG | - | chr5.2:13936753-13936772 | MS.gene67690:CDS | 35.0% | |
| AATGACGATGAAGAAGGTAA+GGG | - | chr5.2:13936754-13936773 | MS.gene67690:CDS | 35.0% | |
| ACAGTACAGATGTTGAAGAA+GGG | - | chr5.2:13939523-13939542 | MS.gene67690:intron | 35.0% | |
| AGCCTGATATGGCATAAATA+AGG | - | chr5.2:13938242-13938261 | MS.gene67690:intron | 35.0% | |
| AGCGGAATCGAATGAAAAAA+CGG | + | chr5.2:13936690-13936709 | None:intergenic | 35.0% | |
| AGTCTACAAATTGGGAAAGA+AGG | - | chr5.2:13937883-13937902 | MS.gene67690:intron | 35.0% | |
| ATAAGTGGTCAAGTACCAAA+TGG | - | chr5.2:13939877-13939896 | MS.gene67690:CDS | 35.0% | |
| CATCCTATATGTTAAGGGTT+TGG | - | chr5.2:13937924-13937943 | MS.gene67690:intron | 35.0% | |
| CTTTCAATTAAGCCAAAGAG+AGG | - | chr5.2:13939630-13939649 | MS.gene67690:intron | 35.0% | |
| CTTTCTGATTGTGGGAAAAA+AGG | - | chr5.2:13939606-13939625 | MS.gene67690:CDS | 35.0% | |
| GCTAAACTTTAGTGATTGGA+AGG | + | chr5.2:13938642-13938661 | None:intergenic | 35.0% | |
| GTACCAAACCCTTAACATAT+AGG | + | chr5.2:13937930-13937949 | None:intergenic | 35.0% | |
| GTTAAATGATGCTTGATGGA+AGG | - | chr5.2:13938482-13938501 | MS.gene67690:intron | 35.0% | |
| GTTTAGTGCATACCAATGAA+AGG | - | chr5.2:13938013-13938032 | MS.gene67690:intron | 35.0% | |
| TACAGTACAGATGTTGAAGA+AGG | - | chr5.2:13939522-13939541 | MS.gene67690:intron | 35.0% | |
| TAGCCTGATATGCATAAACA+AGG | - | chr5.2:13938049-13938068 | MS.gene67690:intron | 35.0% | |
| TCAAACATGGAATTCAAACG+GGG | + | chr5.2:13938524-13938543 | None:intergenic | 35.0% | |
| TCAAGAAAGTAGTCATAGTG+AGG | + | chr5.2:13939357-13939376 | None:intergenic | 35.0% | |
| TCAGAAAGCTCATTATACCA+CGG | + | chr5.2:13939594-13939613 | None:intergenic | 35.0% | |
| TGAATAATCTGAGTAGACCA+AGG | - | chr5.2:13938662-13938681 | MS.gene67690:intron | 35.0% | |
| TTGTGATACACAAAAGCTCT+AGG | + | chr5.2:13936811-13936830 | None:intergenic | 35.0% | |
| ! | ATCCTCATTCTTCTCGTTTT+CGG | - | chr5.2:13936565-13936584 | MS.gene67690:intron | 35.0% |
| ! | CAATTTGTAGACTAGTCACA+CGG | + | chr5.2:13937876-13937895 | None:intergenic | 35.0% |
| ! | GAAGATGATGATTTTCGTGA+TGG | + | chr5.2:13936502-13936521 | None:intergenic | 35.0% |
| ! | GCAACCATTTTCAATTTCAG+AGG | + | chr5.2:13938814-13938833 | None:intergenic | 35.0% |
| ! | TAATTTTGTGGGGTTGAGTT+AGG | - | chr5.2:13938133-13938152 | MS.gene67690:intron | 35.0% |
| !! | AGTGAGAACTTTTGAGTAGT+TGG | - | chr5.2:13939138-13939157 | MS.gene67690:intron | 35.0% |
| !! | GTGTCCTCTGAAATTGAAAA+TGG | - | chr5.2:13938807-13938826 | MS.gene67690:intron | 35.0% |
| !! | GTGTGACTAGTCTACAAATT+GGG | - | chr5.2:13937875-13937894 | MS.gene67690:intron | 35.0% |
| !!! | GTTTTGATTGGAAGAAGGAA+TGG | + | chr5.2:13936599-13936618 | None:intergenic | 35.0% |
| !!! | TTTATCTTTTAGGGCCTGTT+TGG | + | chr5.2:13937367-13937386 | None:intergenic | 35.0% |
| ACAAACCACAGCCTTGATTA+AGG | + | chr5.2:13937780-13937799 | None:intergenic | 40.0% | |
| ACAATGGAGGTAAGATCGTT+GGG | + | chr5.2:13936631-13936650 | None:intergenic | 40.0% | |
| ACAGAAACGTTACCTATCGA+CGG | + | chr5.2:13936662-13936681 | None:intergenic | 40.0% | |
| AGTACAGATGTTGAAGAAGG+GGG | - | chr5.2:13939525-13939544 | MS.gene67690:intron | 40.0% | |
| ATAATCTGAGTAGACCAAGG+AGG | - | chr5.2:13938665-13938684 | MS.gene67690:intron | 40.0% | |
| CAGATATTCACATTCCTCCT+TGG | + | chr5.2:13938682-13938701 | None:intergenic | 40.0% | |
| CAGTACAGATGTTGAAGAAG+GGG | - | chr5.2:13939524-13939543 | MS.gene67690:intron | 40.0% | |
| CATCACATGCTATCACTTAC+AGG | + | chr5.2:13939431-13939450 | None:intergenic | 40.0% | |
| CATGGCTACATACCAAAGAA+AGG | - | chr5.2:13938205-13938224 | MS.gene67690:intron | 40.0% | |
| CATTGTTTCGATTGCCAGTA+TGG | - | chr5.2:13938839-13938858 | MS.gene67690:intron | 40.0% | |
| CTTTCTTTGGTATGTAGCCA+TGG | + | chr5.2:13938207-13938226 | None:intergenic | 40.0% | |
| GTGAGACTTAAGCCTTTCAT+TGG | + | chr5.2:13938028-13938047 | None:intergenic | 40.0% | |
| TTAGATGCATCAAGCTTGCA+TGG | - | chr5.2:13939693-13939712 | MS.gene67690:intron | 40.0% | |
| TTCCGAAAACGAGAAGAATG+AGG | + | chr5.2:13936570-13936589 | None:intergenic | 40.0% | |
| TTGGGAAAGAAGGTGATTTC+TGG | - | chr5.2:13937893-13937912 | MS.gene67690:intron | 40.0% | |
| ! | AGTAAAGCATCACCTCTCTT+TGG | + | chr5.2:13939645-13939664 | None:intergenic | 40.0% |
| ! | ATAACTTTCAGGTGGTTGTC+CGG | - | chr5.2:13939842-13939861 | MS.gene67690:CDS | 40.0% |
| ! | GATGCATCTAAAGTTGCATC+CGG | + | chr5.2:13939684-13939703 | None:intergenic | 40.0% |
| ! | GTGGGTTGAAGTTGTATCAT+GGG | - | chr5.2:13936783-13936802 | MS.gene67690:CDS | 40.0% |
| ! | GTTGGACTTTAGCCTTTCTT+TGG | + | chr5.2:13938220-13938239 | None:intergenic | 40.0% |
| !! | AGTGGGTTGAAGTTGTATCA+TGG | - | chr5.2:13936782-13936801 | MS.gene67690:CDS | 40.0% |
| !! | CGTGTGACTAGTCTACAAAT+TGG | - | chr5.2:13937874-13937893 | MS.gene67690:intron | 40.0% |
| !! | GAGGTGATGCTTTACTTTTC+TGG | - | chr5.2:13939649-13939668 | MS.gene67690:intron | 40.0% |
| !! | GGGTTTAGGCAAGTTTTGAT+TGG | + | chr5.2:13936611-13936630 | None:intergenic | 40.0% |
| !! | TGTTTAACTTGAAGCTCCTG+TGG | - | chr5.2:13938574-13938593 | MS.gene67690:intron | 40.0% |
| !!! | GGCAAGTTTTGATTGGAAGA+AGG | + | chr5.2:13936604-13936623 | None:intergenic | 40.0% |
| AAAGAGCAAAGACAGCAGGT+AGG | - | chr5.2:13938758-13938777 | MS.gene67690:intron | 45.0% | |
| AAAGATGGGGTTTGCCATAC+TGG | + | chr5.2:13938856-13938875 | None:intergenic | 45.0% | |
| AAGAAGGTAAGGGTGAACAG+TGG | - | chr5.2:13936764-13936783 | MS.gene67690:CDS | 45.0% | |
| AAGTAGGGGGTTTAGTACCA+TGG | - | chr5.2:13938187-13938206 | MS.gene67690:intron | 45.0% | |
| AAGTCCAACGTAGCCTGATA+TGG | - | chr5.2:13938231-13938250 | MS.gene67690:intron | 45.0% | |
| ACCGTGCTCTGTATATTGTG+AGG | + | chr5.2:13939289-13939308 | None:intergenic | 45.0% | |
| AGAAGGTAAGGGTGAACAGT+GGG | - | chr5.2:13936765-13936784 | MS.gene67690:CDS | 45.0% | |
| CAATATACAGAGCACGGTGA+AGG | - | chr5.2:13939291-13939310 | MS.gene67690:intron | 45.0% | |
| CACAAACAGGGCCTTAATCA+AGG | - | chr5.2:13937766-13937785 | MS.gene67690:intron | 45.0% | |
| GACAATGGAGGTAAGATCGT+TGG | + | chr5.2:13936632-13936651 | None:intergenic | 45.0% | |
| GAGGTAAGATCGTTGGGTTT+AGG | + | chr5.2:13936625-13936644 | None:intergenic | 45.0% | |
| GATTGGAAGAAGGAATGGAG+AGG | + | chr5.2:13936594-13936613 | None:intergenic | 45.0% | |
| GCCTCACAATATACAGAGCA+CGG | - | chr5.2:13939285-13939304 | MS.gene67690:intron | 45.0% | |
| GGAATTTCAGTAATGTGCCG+TGG | - | chr5.2:13939574-13939593 | MS.gene67690:CDS | 45.0% | |
| GGTGGTTGTCCGGTAATTAA+AGG | - | chr5.2:13939852-13939871 | MS.gene67690:CDS | 45.0% | |
| TATGCCATATCAGGCTACGT+TGG | + | chr5.2:13938238-13938257 | None:intergenic | 45.0% | |
| TGAAATTCCCCTTAGCAGCA+GGG | + | chr5.2:13939563-13939582 | None:intergenic | 45.0% | |
| TTCATTGACGCGGATCCATT+TGG | + | chr5.2:13939895-13939914 | None:intergenic | 45.0% | |
| TTGTCCATAACACCGTCGAT+AGG | - | chr5.2:13936647-13936666 | MS.gene67690:intron | 45.0% | |
| ! | GTTACCTATCGACGGTGTTA+TGG | + | chr5.2:13936654-13936673 | None:intergenic | 45.0% |
| !! | ACAGTTGTTGATAGCGAGAC+TGG | - | chr5.2:13938735-13938754 | MS.gene67690:intron | 45.0% |
| !! | ACTGTTGACTTGTGCATGCT+CGG | + | chr5.2:13938720-13938739 | None:intergenic | 45.0% |
| !! | ATCGACGGTGTTATGGACAA+TGG | + | chr5.2:13936647-13936666 | None:intergenic | 45.0% |
| !! | TACGAGCTCTGGAACATTTC+TGG | - | chr5.2:13938904-13938923 | MS.gene67690:intron | 45.0% |
| !!! | ACTTTTCTGGAGCATGAAGC+CGG | - | chr5.2:13939662-13939681 | MS.gene67690:intron | 45.0% |
| !!! | AAAAAAAAAGTATATATAAT+AGG | + | chr5.2:13939012-13939031 | None:intergenic | 5.0% |
| AACTAGCAGCCTCGAACTCT+AGG | - | chr5.2:13937950-13937969 | MS.gene67690:intron | 50.0% | |
| ACAGTGTTCCCTGCTGCTAA+GGG | - | chr5.2:13939552-13939571 | MS.gene67690:intron | 50.0% | |
| AGGTGGGGTTACTTACCTAC+AGG | + | chr5.2:13938992-13939011 | None:intergenic | 50.0% | |
| CACAATCTTATCACGTCCCC+TGG | + | chr5.2:13938930-13938949 | None:intergenic | 50.0% | |
| CTGAAATTCCCCTTAGCAGC+AGG | + | chr5.2:13939564-13939583 | None:intergenic | 50.0% | |
| CTGGAAAGAGCAAAGACAGC+AGG | - | chr5.2:13938754-13938773 | MS.gene67690:intron | 50.0% | |
| GGGGACGTGATAAGATTGTG+AGG | - | chr5.2:13938930-13938949 | MS.gene67690:intron | 50.0% | |
| TTGTTCCCTCCTAGAGTTCG+AGG | + | chr5.2:13937962-13937981 | None:intergenic | 50.0% | |
| ! | TCAACGGGCTTTCACAGTAG+AGG | - | chr5.2:13939792-13939811 | MS.gene67690:CDS | 50.0% |
| !! | CTCTGGAACATTTCTGGCCA+GGG | - | chr5.2:13938910-13938929 | MS.gene67690:intron | 50.0% |
| !! | GACGGTGTTATGGACAATGG+AGG | + | chr5.2:13936644-13936663 | None:intergenic | 50.0% |
| !! | TCTGGAACATTTCTGGCCAG+GGG | - | chr5.2:13938911-13938930 | MS.gene67690:intron | 50.0% |
| CAGGGCCTTAATCAAGGCTG+TGG | - | chr5.2:13937772-13937791 | MS.gene67690:intron | 55.0% | |
| CAGTGTTCCCTGCTGCTAAG+GGG | - | chr5.2:13939553-13939572 | MS.gene67690:intron | 55.0% | |
| GACAGTGTTCCCTGCTGCTA+AGG | - | chr5.2:13939551-13939570 | MS.gene67690:intron | 55.0% | |
| TAGCAGCCTCGAACTCTAGG+AGG | - | chr5.2:13937953-13937972 | MS.gene67690:intron | 55.0% | |
| TGAAAGCCCGTTGACGCAGA+AGG | + | chr5.2:13939786-13939805 | None:intergenic | 55.0% | |
| TGTAGAGTGCGTACGAGCTC+TGG | - | chr5.2:13938893-13938912 | MS.gene67690:intron | 55.0% | |
| TGTGCTGCCTTCTGCGTCAA+CGG | - | chr5.2:13939776-13939795 | MS.gene67690:CDS | 55.0% | |
| ! | AGCAGCCTCGAACTCTAGGA+GGG | - | chr5.2:13937954-13937973 | MS.gene67690:intron | 55.0% |
| !! | GCTCTGGAACATTTCTGGCC+AGG | - | chr5.2:13938909-13938928 | MS.gene67690:intron | 55.0% |
| GTGCTGCCTTCTGCGTCAAC+GGG | - | chr5.2:13939777-13939796 | MS.gene67690:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 13936472 | 13939926 | 13936472 | ID=MS.gene67690 |
| chr5.2 | mRNA | 13936472 | 13939926 | 13936472 | ID=MS.gene67690.t1;Parent=MS.gene67690 |
| chr5.2 | exon | 13939730 | 13939926 | 13939730 | ID=MS.gene67690.t1.exon1;Parent=MS.gene67690.t1 |
| chr5.2 | CDS | 13939730 | 13939926 | 13939730 | ID=cds.MS.gene67690.t1;Parent=MS.gene67690.t1 |
| chr5.2 | exon | 13939561 | 13939645 | 13939561 | ID=MS.gene67690.t1.exon2;Parent=MS.gene67690.t1 |
| chr5.2 | CDS | 13939561 | 13939645 | 13939561 | ID=cds.MS.gene67690.t1;Parent=MS.gene67690.t1 |
| chr5.2 | exon | 13937623 | 13937720 | 13937623 | ID=MS.gene67690.t1.exon3;Parent=MS.gene67690.t1 |
| chr5.2 | CDS | 13937623 | 13937720 | 13937623 | ID=cds.MS.gene67690.t1;Parent=MS.gene67690.t1 |
| chr5.2 | exon | 13937403 | 13937500 | 13937403 | ID=MS.gene67690.t1.exon4;Parent=MS.gene67690.t1 |
| chr5.2 | CDS | 13937403 | 13937500 | 13937403 | ID=cds.MS.gene67690.t1;Parent=MS.gene67690.t1 |
| chr5.2 | exon | 13936968 | 13937097 | 13936968 | ID=MS.gene67690.t1.exon5;Parent=MS.gene67690.t1 |
| chr5.2 | CDS | 13936968 | 13937097 | 13936968 | ID=cds.MS.gene67690.t1;Parent=MS.gene67690.t1 |
| chr5.2 | exon | 13936684 | 13936871 | 13936684 | ID=MS.gene67690.t1.exon6;Parent=MS.gene67690.t1 |
| chr5.2 | CDS | 13936684 | 13936871 | 13936684 | ID=cds.MS.gene67690.t1;Parent=MS.gene67690.t1 |
| chr5.2 | exon | 13936472 | 13936545 | 13936472 | ID=MS.gene67690.t1.exon7;Parent=MS.gene67690.t1 |
| chr5.2 | CDS | 13936472 | 13936545 | 13936472 | ID=cds.MS.gene67690.t1;Parent=MS.gene67690.t1 |
| Gene Sequence |
| Protein sequence |
