AlfalfaGEDB | MS.gene67703

M. sativa cultivar XinJiangDaYe / MS.gene67703

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67703.t1	XP_003609029.1	87.2	392	50	0	1	392	1	392	1.10E-152	549.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67703.t1	G7JQV9	87.2	392	50	0	1	392	1	392	8.1e-153	549.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049596	MS.gene67703	0.84384	1.09E-58	-1.69E-46
MS.gene049989	MS.gene67703	0.837777	4.25E-57	-1.69E-46
MS.gene050297	MS.gene67703	0.875037	4.22E-68	-1.69E-46
MS.gene05124	MS.gene67703	0.836401	9.56E-57	-1.69E-46
MS.gene051629	MS.gene67703	0.813989	1.94E-51	-1.69E-46
MS.gene051955	MS.gene67703	0.804891	1.74E-49	-1.69E-46
MS.gene052143	MS.gene67703	0.815657	8.26E-52	-1.69E-46
MS.gene052367	MS.gene67703	0.84045	8.63E-58	-1.69E-46
MS.gene053173	MS.gene67703	0.823416	1.40E-53	-1.69E-46
MS.gene053348	MS.gene67703	0.812341	4.45E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67703.t1	MTR_4g108100	93.112	392	27	0	1	392	1	392	0.0	701
MS.gene67703.t1	MTR_4g060050	49.180	61	31	0	130	190	142	202	5.87e-13	67.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67703.t1	AT5G62550	46.667	255	111	9	1	242	5	247	1.24e-44	161

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Find 78 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTCAGAGACCGGCGTT+CGG	0.394436	8.4:-19022910	None:intergenic
AACCATAGAGTCACCCAAAA+AGG	0.356976	8.4:+19023739	MS.gene67703:CDS
AAGAGTGGGGTCAAGAAATA+TGG	0.315516	8.4:+19023905	MS.gene67703:CDS
AAGCTTGAAACCAATAAGAG+TGG	0.600197	8.4:+19023890	MS.gene67703:CDS
AATACCAGAAACATCAACAG+AGG	0.698470	8.4:-19021686	None:intergenic
AATCAAGGGCACCTACACTT+TGG	0.520785	8.4:-19022724	None:intergenic
AATCTCAGAGACCGGCGTTC+GGG	0.362228	8.4:-19022909	None:intergenic
ACAGGATTAGAGAGCCTTCT+TGG	0.325025	8.4:-19022782	None:intergenic
ACCTACACTTTGGCTTACAT+TGG	0.542241	8.4:-19022714	None:intergenic
ACTCCGAGTCCAAAGGCGGT+TGG	0.613714	8.4:+19022818	MS.gene67703:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCACATTTATACATGCG+TGG	+	chr8.4:19023260-19023279	MS.gene67703:intron	30.0%
AACTGAAAATTCATGCAAGA+AGG	+	chr8.4:19022152-19022171	MS.gene67703:intron	30.0%
ACAAAGACTTATCGATCTTA+AGG	-	chr8.4:19022492-19022511	None:intergenic	30.0%
ACTAGCCAAAAGAAAAATCT+TGG	+	chr8.4:19023764-19023783	MS.gene67703:CDS	30.0%
ACTCAGATTGTTTGAATTTG+TGG	+	chr8.4:19022001-19022020	MS.gene67703:intron	30.0%
CAACAAAAACTTACTGAACT+TGG	+	chr8.4:19023428-19023447	MS.gene67703:CDS	30.0%
CTCAGATTGTTTGAATTTGT+GGG	+	chr8.4:19022002-19022021	MS.gene67703:intron	30.0%
GCCAATATATGTATACATGT+TGG	-	chr8.4:19022402-19022421	None:intergenic	30.0%
TAAGTCTTGCATAATGCAAA+TGG	-	chr8.4:19022551-19022570	None:intergenic	30.0%
TCAGATTGTTTGAATTTGTG+GGG	+	chr8.4:19022003-19022022	MS.gene67703:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	19021670	19024233	19021670	ID=MS.gene67703
chr8.4	mRNA	19021670	19024233	19021670	ID=MS.gene67703.t1;Parent=MS.gene67703
chr8.4	exon	19021670	19021703	19021670	ID=MS.gene67703.t1.exon1;Parent=MS.gene67703.t1
chr8.4	CDS	19021670	19021703	19021670	ID=cds.MS.gene67703.t1;Parent=MS.gene67703.t1
chr8.4	exon	19021800	19021914	19021800	ID=MS.gene67703.t1.exon2;Parent=MS.gene67703.t1
chr8.4	CDS	19021800	19021914	19021800	ID=cds.MS.gene67703.t1;Parent=MS.gene67703.t1
chr8.4	exon	19022700	19023072	19022700	ID=MS.gene67703.t1.exon3;Parent=MS.gene67703.t1
chr8.4	CDS	19022700	19023072	19022700	ID=cds.MS.gene67703.t1;Parent=MS.gene67703.t1
chr8.4	exon	19023380	19023950	19023380	ID=MS.gene67703.t1.exon4;Parent=MS.gene67703.t1
chr8.4	CDS	19023380	19023950	19023380	ID=cds.MS.gene67703.t1;Parent=MS.gene67703.t1
chr8.4	exon	19024045	19024088	19024045	ID=MS.gene67703.t1.exon5;Parent=MS.gene67703.t1
chr8.4	CDS	19024045	19024088	19024045	ID=cds.MS.gene67703.t1;Parent=MS.gene67703.t1
chr8.4	exon	19024192	19024233	19024192	ID=MS.gene67703.t1.exon6;Parent=MS.gene67703.t1
chr8.4	CDS	19024192	19024233	19024192	ID=cds.MS.gene67703.t1;Parent=MS.gene67703.t1

Gene Sequence

>MS.gene67703

ATGGAAGAACAACAATCCTCTGTTGATGTTTCTGGTATTCTATTTTTTTCTTTCTTTCCTTTTTCAATTAATTGATTGTTCTGTTACTATGCAGTAACAAACAATTCAACTGTTTTTTTTTTCCTTTCAGGGAACTCTGCTTCTGCGAAACCAAAACTTCAAAGATATCCACTGCGTTCGGCTTCTAGATCCAAGGAACAGAAGCCAGATGCACCTGTTAGCACCAATGCTTCTCAATCTAAGAGGTATTTTTTCATCTTTTCTTAAATATTTGTTGAAATTTTTCAGAATGTAGAGAATTATAGTTTTGTTTGGAAAACGTTATACTTTTACTCAGATTGTTTGAATTTGTGGGGATTATTTTTTAGATGAAGTTAATTTCAAAACATTGGATTTTGATTTTTGAGTCACTACTTCCAACGTTAATTACATTATACACTTTTCCCTTCGATTTTCAACATAATAAACAAAACAAAACAGAAAACTGAAAATTCATGCAAGAAGGATAATATTGGATATGCGTAATTTGATTCATATTTGTTTATTTTTATTTATATATATATATATATATTAAACTAAAAACTTTATGTTAAAAATCTTGCTAACTTGAACTTGTGCCTAAAGATACATGTTAAGGAATCTAAAAATAAGAGCTTTAGGTTGAAAAATGTAATTTTTAACTTTTTCAATACACGAATTCAGAAATAATATATTTCTACATTTAGCTTACCAACATGTATACATATATTGGCATTTGCCTTTAGTTTGTTTAATGTGAACAAGTAAAATAGTTTTGTATCATGCACAAATCTGTTTTCACCTTAAGATCGATAAGTCTTTGTCATATCTCATTTGATCTAATAGTGAGATTTATTGATCCATTTGCATTATGCAAGACTTATCTTACTTATTCACCATAACCTTAGTTATATATGAAAATTGAGTGAATACTTTTTAGGATATTTTCTTTAATTGTGTCCCTTGAATTGAAGTAGAGTACAAATTAAAAAAATCTAATTTACATTTTCAGAGGAAGAAGTACTGCCAATGTAAGCCAAAGTGTAGGTGCCCTTGATTTCTCTGGCAAGGACAGATCTTCAAGTGCTAAACCACCAAGAAGGCTCTCTAATCCTGTCAAATCATCTACAACTCCGAGTCCAAAGGCGGTTGGCAACATAACCCCAATCTCTGAGACAAGATCAAGGAGGTCTGGAAATAGCCAAGAGCCTCAAACCAGAACCCGAACGCCGGTCTCTGAGATTTTCAGATCATCTACTAAAATGAAGTTTAGTCTCTTGTCTTCAGCTTCATATTGGTTAAGCCAAATCAAGCTCTCTGAAAATGTTGAAAAGCACAACATTTCACTTGGATTCTTCAAACTAGCCTTGGAGGCAGGATGTGAGGTAAAACACACACCAATCAATTCATTCCTGTTTATTTCAATTTTGTCATTTTTTTCTTTTCAACAATGTACCTACTTAGCAAGTTTTAAAATTTTGACTGTATTGTGATTTTTTATATTGTGGAGTATAGCAGTCAAATCCAATTGATAAACTTTGATTGCAATCGCATCATGATCTTTGGTTGTATAAATCACATTTATACATGCGTGGCCTCAACCGTGGTTGCGGGCTAGACTACAGATCTTGTGTTTTCCCATGAACTAATCAAGTCGTCTTTTTTATGGTTTTTGTGAAATTTCAACTACAGCCCTTCCAGAAATTACAAGACGAGCTGAAGTGTTACTTGCGCCGACACCAACAAAAACTTACTGAACTTGGAGAACAAGTGAAAGTACTGGTAGAAAGCTATAACATTGCAGAAGTCATAGAGCAGTCTCAAGTTTCTGAGAGTATTTCACAGATGCCAGAAGAGGAAACTCGTTCGTCTGATGATGAAGGCAACTTCAGCACTTCTTCTACCATGGCTACTGGTAAACTGACCCCCAAGTGCTTAAACACTGCCTCTATTCAAGTCATTTCTCCTGTTAAAGCCATAGAGTCGCCCAAAAAGGAAATTAGCCAAAAGAAAAATCTCACTGCCTTTATTCAAGTCACTTCTCCTGGTAAAACCATAGAGTCACCCAAAAAGGAAACTAGCCAAAAGAAAAATCTTGGAACCAAGTTGAGAGAAAATCTCAGAATGAACTCTGCAATTTCAAAATCTGCTTCTGGTAGTTTGAACCGTAGTAGGTCAGTTAAAAAGTCAGATAAGCCAAGCAAGCTTGAAACCAATAAGAGTGGGGTCAAGAAATATGGAAGGAAAGCTGATGCTAAAGAAGGTGCATAAATTTTTCTTTTATCACACTTAATTTTTTCTAGTTCATTGTCTAAAATCTAATGCCTTGGTGTTGTTACTTTTTGCTTTTTTTACAGTTTCTGTTAGTCCTATTACAAGTGCTGAAGAAAAAGAAAATATGGTAAAGTGGTTTACTATGATAATGAATTAAAGTTTCTACAATTACAGTTTCTACAATGTGTTAGAAGAGAATATATGTCTGATATGTTGGTTTTGTCTTGTAGGATGTTCGGTCCACTGATGATGATTTGATTGAAGTCATGTAA

Protein sequence

>MS.gene67703.t1

MEEQQSSVDVSGNSASAKPKLQRYPLRSASRSKEQKPDAPVSTNASQSKRGRSTANVSQSVGALDFSGKDRSSSAKPPRRLSNPVKSSTTPSPKAVGNITPISETRSRRSGNSQEPQTRTRTPVSEIFRSSTKMKFSLLSSASYWLSQIKLSENVEKHNISLGFFKLALEAGCEPFQKLQDELKCYLRRHQQKLTELGEQVKVLVESYNIAEVIEQSQVSESISQMPEEETRSSDDEGNFSTSSTMATGKLTPKCLNTASIQVISPVKAIESPKKEISQKKNLTAFIQVTSPGKTIESPKKETSQKKNLGTKLRENLRMNSAISKSASGSLNRSRSVKKSDKPSKLETNKSGVKKYGRKADAKEVSVSPITSAEEKENMDVRSTDDDLIEVM