Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67821.t1 | XP_003594689.1 | 91.8 | 233 | 14 | 1 | 1 | 228 | 62 | 294 | 4.90E-100 | 374 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67821.t1 | B6J6T7 | 46.9 | 98 | 52 | 0 | 72 | 169 | 1 | 98 | 3.6e-19 | 96.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67821.t1 | A2Q664 | 91.8 | 233 | 14 | 1 | 1 | 228 | 62 | 294 | 3.5e-100 | 374.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050783 | MS.gene67821 | 0.815515 | 8.89E-52 | -1.69E-46 |
| MS.gene050812 | MS.gene67821 | 0.880674 | 4.52E-70 | -1.69E-46 |
| MS.gene051171 | MS.gene67821 | 0.839312 | 1.71E-57 | -1.69E-46 |
| MS.gene051242 | MS.gene67821 | 0.804622 | 1.98E-49 | -1.69E-46 |
| MS.gene051244 | MS.gene67821 | 0.80472 | 1.89E-49 | -1.69E-46 |
| MS.gene051525 | MS.gene67821 | 0.823545 | 1.31E-53 | -1.69E-46 |
| MS.gene051582 | MS.gene67821 | 0.863883 | 1.81E-64 | -1.69E-46 |
| MS.gene053107 | MS.gene67821 | 0.820097 | 8.21E-53 | -1.69E-46 |
| MS.gene053330 | MS.gene67821 | 0.852121 | 5.68E-61 | -1.69E-46 |
| MS.gene053971 | MS.gene67821 | 0.812642 | 3.82E-51 | -1.69E-46 |
| MS.gene054719 | MS.gene67821 | 0.815383 | 9.51E-52 | -1.69E-46 |
| MS.gene055370 | MS.gene67821 | 0.823394 | 1.42E-53 | -1.69E-46 |
| MS.gene05553 | MS.gene67821 | 0.833959 | 3.95E-56 | -1.69E-46 |
| MS.gene055971 | MS.gene67821 | 0.851136 | 1.08E-60 | -1.69E-46 |
| MS.gene056407 | MS.gene67821 | 0.805719 | 1.17E-49 | -1.69E-46 |
| MS.gene056633 | MS.gene67821 | 0.809876 | 1.52E-50 | -1.69E-46 |
| MS.gene056796 | MS.gene67821 | 0.810771 | 9.77E-51 | -1.69E-46 |
| MS.gene057011 | MS.gene67821 | 0.80568 | 1.19E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene67821 | 0.818021 | 2.44E-52 | -1.69E-46 |
| MS.gene058233 | MS.gene67821 | 0.815355 | 9.65E-52 | -1.69E-46 |
| MS.gene058276 | MS.gene67821 | 0.915673 | 4.45E-85 | -1.69E-46 |
| MS.gene058746 | MS.gene67821 | 0.823226 | 1.55E-53 | -1.69E-46 |
| MS.gene059141 | MS.gene67821 | 0.80993 | 1.48E-50 | -1.69E-46 |
| MS.gene060407 | MS.gene67821 | 0.826324 | 2.89E-54 | -1.69E-46 |
| MS.gene06090 | MS.gene67821 | 0.813682 | 2.26E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67821.t1 | MTR_2g033490 | 94.850 | 233 | 7 | 2 | 1 | 228 | 62 | 294 | 5.21e-157 | 437 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67821.t1 | AT3G17170 | 69.767 | 172 | 52 | 0 | 11 | 182 | 59 | 230 | 5.31e-89 | 265 |
Find 44 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAACTCGTTGATATATT+TGG | 0.137864 | 2.4:+57072204 | None:intergenic |
| TGAATCTGTTCTTCTTAAAA+AGG | 0.188788 | 2.4:-57074409 | MS.gene67821:intron |
| CAGTTTCCACGTCAAGCTTT+AGG | 0.189454 | 2.4:+57073417 | None:intergenic |
| CTTCTTTCTTATCTTTCTTC+CGG | 0.249636 | 2.4:+57074481 | None:intergenic |
| TTCTTTCTTATCTTTCTTCC+GGG | 0.257094 | 2.4:+57074482 | None:intergenic |
| CATTATAGACGATGATGATT+TGG | 0.314854 | 2.4:-57071984 | MS.gene67821:CDS |
| AGTTTCCACGTCAAGCTTTA+GGG | 0.316767 | 2.4:+57073418 | None:intergenic |
| CCAGTGCTTTCATCTGATTT+AGG | 0.330990 | 2.4:+57074441 | None:intergenic |
| GGGAGAAGAAAGGAAGAGTA+TGG | 0.343212 | 2.4:-57072318 | MS.gene67821:CDS |
| GCTTGACGTGGAAACTGATA+TGG | 0.365705 | 2.4:-57073411 | MS.gene67821:CDS |
| CAACGAGTTCAAGACTTTGT+TGG | 0.383716 | 2.4:-57072194 | MS.gene67821:CDS |
| GGAAGATGGTAAACTTCTTC+CGG | 0.390554 | 2.4:-57073590 | MS.gene67821:CDS |
| CTTCGTCCCTCTTTATCACT+AGG | 0.396913 | 2.4:+57072146 | None:intergenic |
| AGTATGGAGATTCAGTGATT+GGG | 0.412799 | 2.4:-57072302 | MS.gene67821:CDS |
| GAGTATGGAGATTCAGTGAT+TGG | 0.428387 | 2.4:-57072303 | MS.gene67821:CDS |
| CAGAAGACAGTTGAGGAAGA+TGG | 0.433743 | 2.4:-57073604 | MS.gene67821:CDS |
| GCTGTTAATGAGAAAGTTCA+AGG | 0.436751 | 2.4:-57072836 | MS.gene67821:intron |
| CACAGATGATGAAGAAGAAT+GGG | 0.451353 | 2.4:-57072071 | MS.gene67821:CDS |
| GATGATATTGAGGGCGGTGA+TGG | 0.471829 | 2.4:-57072013 | MS.gene67821:CDS |
| AAGAAGAATGGGATGATGAA+TGG | 0.476855 | 2.4:-57072060 | MS.gene67821:CDS |
| GTATTAAACTCGGGAGGAGG+AGG | 0.481879 | 2.4:+57072106 | None:intergenic |
| GCACAGATGATGAAGAAGAA+TGG | 0.500429 | 2.4:-57072072 | MS.gene67821:CDS |
| GATGAATGGGATGATGAAGA+TGG | 0.520407 | 2.4:-57072046 | MS.gene67821:CDS |
| ATCTGATTATGATGATATTG+AGG | 0.526841 | 2.4:-57072023 | MS.gene67821:CDS |
| TTCGACACCTAGTGATAAAG+AGG | 0.527803 | 2.4:-57072153 | MS.gene67821:CDS |
| AGAAGAATGGGATGATGAAT+GGG | 0.530879 | 2.4:-57072059 | MS.gene67821:CDS |
| TCTCACTCATTATGAATGCC+CGG | 0.540971 | 2.4:-57074500 | None:intergenic |
| TCATCATCATCTTCAAACTC+CGG | 0.543493 | 2.4:+57073571 | None:intergenic |
| TCATGAGAAACATGCAGAAG+AGG | 0.554875 | 2.4:-57072864 | MS.gene67821:CDS |
| GTATGGAGATTCAGTGATTG+GGG | 0.567959 | 2.4:-57072301 | MS.gene67821:CDS |
| AAAGTATTAAACTCGGGAGG+AGG | 0.569590 | 2.4:+57072103 | None:intergenic |
| TCTGATTATGATGATATTGA+GGG | 0.573289 | 2.4:-57072022 | MS.gene67821:CDS |
| AGCAACAAAAGTATTAAACT+CGG | 0.581584 | 2.4:+57072096 | None:intergenic |
| TGATTGGGGTATGAGAAAGT+TGG | 0.581664 | 2.4:-57072287 | MS.gene67821:CDS |
| TCAAGTAAACAATCTCATAG+TGG | 0.585631 | 2.4:+57072888 | None:intergenic |
| CCTAAATCAGATGAAAGCAC+TGG | 0.590334 | 2.4:-57074441 | MS.gene67821:CDS |
| GCAACAAAAGTATTAAACTC+GGG | 0.611767 | 2.4:+57072097 | None:intergenic |
| TGATGATTTGGAAATATCAG+AGG | 0.612887 | 2.4:-57071972 | MS.gene67821:CDS |
| TATTAAACTCGGGAGGAGGA+GGG | 0.622797 | 2.4:+57072107 | None:intergenic |
| GATGATTTGGAAATATCAGA+GGG | 0.644533 | 2.4:-57071971 | MS.gene67821:CDS |
| TGAATCCCTAAAGCTTGACG+TGG | 0.671676 | 2.4:-57073423 | MS.gene67821:CDS |
| ACAAAAGTATTAAACTCGGG+AGG | 0.675886 | 2.4:+57072100 | None:intergenic |
| TCGACACCTAGTGATAAAGA+GGG | 0.685347 | 2.4:-57072152 | MS.gene67821:CDS |
| GATTATGATGATATTGAGGG+CGG | 0.728969 | 2.4:-57072019 | MS.gene67821:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAACAAAAATCAAATAA+AGG | + | chr2.4:57072080-57072099 | None:intergenic | 10.0% |
| !! | ATAAACAAAAATCAAATAAA+GGG | + | chr2.4:57072079-57072098 | None:intergenic | 10.0% |
| !! | CAAATAAAAAAAATTATTAG+AGG | + | chr2.4:57073431-57073450 | None:intergenic | 10.0% |
| !! | TTGAATTTATACTTATATAT+TGG | - | chr2.4:57072173-57072192 | MS.gene67821:CDS | 10.0% |
| !! | AAATTCAATAAATCTTCAAA+AGG | + | chr2.4:57072161-57072180 | None:intergenic | 15.0% |
| !! | AATTCAATAAATCTTCAAAA+GGG | + | chr2.4:57072160-57072179 | None:intergenic | 15.0% |
| !!! | AAAATGAAAATTTGGAATAA+GGG | + | chr2.4:57072984-57073003 | None:intergenic | 15.0% |
| !!! | TCAAGTTAAAATGATTTTTT+TGG | + | chr2.4:57074024-57074043 | None:intergenic | 15.0% |
| !! | AATACAGAACAATAATGATT+TGG | + | chr2.4:57073797-57073816 | None:intergenic | 20.0% |
| !! | AATTCTAATGAATCTTCAAA+AGG | + | chr2.4:57072295-57072314 | None:intergenic | 20.0% |
| !! | AGTATACCAAAATAAATTTG+AGG | + | chr2.4:57072214-57072233 | None:intergenic | 20.0% |
| !! | ATGTCACTATTGTTAAATAT+AGG | - | chr2.4:57073742-57073761 | MS.gene67821:intron | 20.0% |
| !! | GATTCGAAAAAAAATGTAAA+AGG | + | chr2.4:57073658-57073677 | None:intergenic | 20.0% |
| !! | GTATACCAAAATAAATTTGA+GGG | + | chr2.4:57072213-57072232 | None:intergenic | 20.0% |
| !! | TAAAAAAGAACCAGAATAAT+CGG | + | chr2.4:57074072-57074091 | None:intergenic | 20.0% |
| !! | TACTCTTTATTGTATATGTA+TGG | - | chr2.4:57073152-57073171 | MS.gene67821:intron | 20.0% |
| !! | TGAGAAAATTCATATCATAA+AGG | + | chr2.4:57072785-57072804 | None:intergenic | 20.0% |
| !! | TTCTCATTGATATTCAATAT+GGG | - | chr2.4:57072727-57072746 | MS.gene67821:intron | 20.0% |
| !! | TTCTCATTGATATTCAATTT+GGG | - | chr2.4:57072799-57072818 | MS.gene67821:intron | 20.0% |
| !! | TTTCTCATTGATATTCAATA+TGG | - | chr2.4:57072726-57072745 | MS.gene67821:intron | 20.0% |
| !! | TTTCTCATTGATATTCAATT+TGG | - | chr2.4:57072798-57072817 | MS.gene67821:intron | 20.0% |
| !! | TTTGTAAACATTATCTAACA+AGG | + | chr2.4:57073229-57073248 | None:intergenic | 20.0% |
| !!! | GAAAATGAAAATTTGGAATA+AGG | + | chr2.4:57072985-57073004 | None:intergenic | 20.0% |
| !!! | TCTGTTTGTTTTTGTTTTTT+TGG | - | chr2.4:57072921-57072940 | MS.gene67821:intron | 20.0% |
| !!! | TTGATGCAATTTTTATTCAT+AGG | - | chr2.4:57073118-57073137 | MS.gene67821:intron | 20.0% |
| ! | AATAATTGTATACACAGCAA+AGG | + | chr2.4:57073947-57073966 | None:intergenic | 25.0% |
| ! | ACTAATGAACTCATTCTATT+TGG | + | chr2.4:57073700-57073719 | None:intergenic | 25.0% |
| ! | ATCTGATTATGATGATATTG+AGG | - | chr2.4:57074421-57074440 | MS.gene67821:CDS | 25.0% |
| ! | ATTATCGTCATTATGGTTTA+GGG | + | chr2.4:57073260-57073279 | None:intergenic | 25.0% |
| ! | TAAACATTATCTAACAAGGT+CGG | + | chr2.4:57073225-57073244 | None:intergenic | 25.0% |
| ! | TCTGATTATGATGATATTGA+GGG | - | chr2.4:57074422-57074441 | MS.gene67821:CDS | 25.0% |
| ! | TGAATCTGTTCTTCTTAAAA+AGG | - | chr2.4:57072035-57072054 | MS.gene67821:CDS | 25.0% |
| !! | CAATACCCTCAAATTTATTT+TGG | - | chr2.4:57072205-57072224 | MS.gene67821:CDS | 25.0% |
| !!! | AGCAACAAAAGTATTAAACT+CGG | + | chr2.4:57074351-57074370 | None:intergenic | 25.0% |
| !!! | TAATTTCTGCTAGTTTTTGT+TGG | - | chr2.4:57072247-57072266 | MS.gene67821:CDS | 25.0% |
| !!! | TTTTAAGAAGAACAGATTCA+GGG | + | chr2.4:57072035-57072054 | None:intergenic | 25.0% |
| !!! | TTTTTAAGAAGAACAGATTC+AGG | + | chr2.4:57072036-57072055 | None:intergenic | 25.0% |
| AAACATACTTCCGATTATTC+TGG | - | chr2.4:57074059-57074078 | MS.gene67821:intron | 30.0% | |
| AGTAATGTCAAATGCTATGA+AGG | + | chr2.4:57072626-57072645 | None:intergenic | 30.0% | |
| CACGTTACTGAATCTTTAAA+GGG | + | chr2.4:57073495-57073514 | None:intergenic | 30.0% | |
| CAGTAACATGACAAACTATT+TGG | - | chr2.4:57073195-57073214 | MS.gene67821:intron | 30.0% | |
| CATCTAGATTATCGTCATTA+TGG | + | chr2.4:57073267-57073286 | None:intergenic | 30.0% | |
| CATTATAGACGATGATGATT+TGG | - | chr2.4:57074460-57074479 | MS.gene67821:CDS | 30.0% | |
| CCTGTACGAAAATGAAAATT+TGG | + | chr2.4:57072992-57073011 | None:intergenic | 30.0% | |
| CTGGATTAATGTTATGACTT+TGG | - | chr2.4:57072958-57072977 | MS.gene67821:intron | 30.0% | |
| CTTCTTTCTTATCTTTCTTC+CGG | + | chr2.4:57071966-57071985 | None:intergenic | 30.0% | |
| CTTGAACTCGTTGATATATT+TGG | + | chr2.4:57074243-57074262 | None:intergenic | 30.0% | |
| GATTATCGTCATTATGGTTT+AGG | + | chr2.4:57073261-57073280 | None:intergenic | 30.0% | |
| GGTTAATTGCAATCTTTGAA+AGG | + | chr2.4:57073637-57073656 | None:intergenic | 30.0% | |
| GTAATTCACTATTTAGGCTA+AGG | - | chr2.4:57072408-57072427 | MS.gene67821:intron | 30.0% | |
| TCAAGTAAACAATCTCATAG+TGG | + | chr2.4:57073559-57073578 | None:intergenic | 30.0% | |
| TTCTTTCTTATCTTTCTTCC+GGG | + | chr2.4:57071965-57071984 | None:intergenic | 30.0% | |
| ! | AAACATTTGCAGACTTTTTG+AGG | - | chr2.4:57074105-57074124 | MS.gene67821:intron | 30.0% |
| ! | AACATTTGCAGACTTTTTGA+GGG | - | chr2.4:57074106-57074125 | MS.gene67821:intron | 30.0% |
| ! | ACTCTTATCTTGTTCTGTTT+TGG | - | chr2.4:57072373-57072392 | MS.gene67821:intron | 30.0% |
| ! | ATCCATCTTTTGCTAACTTT+TGG | - | chr2.4:57073347-57073366 | MS.gene67821:intron | 30.0% |
| ! | CCAAATTTTCATTTTCGTAC+AGG | - | chr2.4:57072989-57073008 | MS.gene67821:intron | 30.0% |
| ! | GATGATTTGGAAATATCAGA+GGG | - | chr2.4:57074473-57074492 | MS.gene67821:CDS | 30.0% |
| ! | TGATGATTTGGAAATATCAG+AGG | - | chr2.4:57074472-57074491 | MS.gene67821:CDS | 30.0% |
| ! | TTTGGTAGTCTAAATAGTTC+TGG | - | chr2.4:57072939-57072958 | MS.gene67821:intron | 30.0% |
| !! | GCAACAAAAGTATTAAACTC+GGG | + | chr2.4:57074350-57074369 | None:intergenic | 30.0% |
| !!! | TTGTTCTGTTTTGGTTAGAA+GGG | - | chr2.4:57072382-57072401 | MS.gene67821:intron | 30.0% |
| AAGAAGAATGGGATGATGAA+TGG | - | chr2.4:57074384-57074403 | MS.gene67821:intron | 35.0% | |
| ACAAGTCATACACCACAAAA+TGG | + | chr2.4:57072450-57072469 | None:intergenic | 35.0% | |
| AGAAGAATGGGATGATGAAT+GGG | - | chr2.4:57074385-57074404 | MS.gene67821:intron | 35.0% | |
| AGTATGGAGATTCAGTGATT+GGG | - | chr2.4:57074142-57074161 | MS.gene67821:intron | 35.0% | |
| CAAGTCATACACCACAAAAT+GGG | + | chr2.4:57072449-57072468 | None:intergenic | 35.0% | |
| CACAGATGATGAAGAAGAAT+GGG | - | chr2.4:57074373-57074392 | MS.gene67821:intron | 35.0% | |
| GATTATGATGATATTGAGGG+CGG | - | chr2.4:57074425-57074444 | MS.gene67821:CDS | 35.0% | |
| GCACGTTACTGAATCTTTAA+AGG | + | chr2.4:57073496-57073515 | None:intergenic | 35.0% | |
| GCTGTTAATGAGAAAGTTCA+AGG | - | chr2.4:57073608-57073627 | MS.gene67821:intron | 35.0% | |
| GGGAGAGTAATTCACTATTT+AGG | - | chr2.4:57072402-57072421 | MS.gene67821:intron | 35.0% | |
| GTCATGAACAAATGACATAG+AGG | + | chr2.4:57073400-57073419 | None:intergenic | 35.0% | |
| TCAACTGTATTGCCAAATTG+TGG | + | chr2.4:57073883-57073902 | None:intergenic | 35.0% | |
| TCATCATCATCTTCAAACTC+CGG | + | chr2.4:57072876-57072895 | None:intergenic | 35.0% | |
| TGCCAAAAGTTAGCAAAAGA+TGG | + | chr2.4:57073352-57073371 | None:intergenic | 35.0% | |
| TGTAATCATAGCTGTTGTGT+CGG | - | chr2.4:57072543-57072562 | MS.gene67821:intron | 35.0% | |
| ! | ACACAAATTTGCCCATTTTG+TGG | - | chr2.4:57072435-57072454 | MS.gene67821:intron | 35.0% |
| ! | CTAAATTTTGCATACAAGCG+AGG | + | chr2.4:57072667-57072686 | None:intergenic | 35.0% |
| ! | TCATTTTCAGAAGACAGTTG+AGG | - | chr2.4:57072833-57072852 | MS.gene67821:intron | 35.0% |
| !! | ACAAAAGTATTAAACTCGGG+AGG | + | chr2.4:57074347-57074366 | None:intergenic | 35.0% |
| !! | ATTAGTTTGCCATTTCCATC+TGG | - | chr2.4:57073714-57073733 | MS.gene67821:intron | 35.0% |
| !! | CATTTTGATGAACTTCGAGA+TGG | - | chr2.4:57074214-57074233 | MS.gene67821:intron | 35.0% |
| !!! | CTTGTTCTGTTTTGGTTAGA+AGG | - | chr2.4:57072381-57072400 | MS.gene67821:intron | 35.0% |
| AAGATGGATCTAAATCCACC+TGG | + | chr2.4:57073336-57073355 | None:intergenic | 40.0% | |
| ACATGAATGCCAGATGGAAA+TGG | + | chr2.4:57073726-57073745 | None:intergenic | 40.0% | |
| AGTTTCCACGTCAAGCTTTA+GGG | + | chr2.4:57073029-57073048 | None:intergenic | 40.0% | |
| ATAGTGACATGAATGCCAGA+TGG | + | chr2.4:57073732-57073751 | None:intergenic | 40.0% | |
| ATGTTATAACCGTGCTCTCT+TGG | - | chr2.4:57073284-57073303 | MS.gene67821:intron | 40.0% | |
| CAACGAGTTCAAGACTTTGT+TGG | - | chr2.4:57074250-57074269 | MS.gene67821:intron | 40.0% | |
| CCAGTGCTTTCATCTGATTT+AGG | + | chr2.4:57072006-57072025 | None:intergenic | 40.0% | |
| GAGTATGGAGATTCAGTGAT+TGG | - | chr2.4:57074141-57074160 | MS.gene67821:intron | 40.0% | |
| GATGAATGGGATGATGAAGA+TGG | - | chr2.4:57074398-57074417 | MS.gene67821:intron | 40.0% | |
| GCACAGATGATGAAGAAGAA+TGG | - | chr2.4:57074372-57074391 | MS.gene67821:intron | 40.0% | |
| GGAAGATGGTAAACTTCTTC+CGG | - | chr2.4:57072854-57072873 | MS.gene67821:CDS | 40.0% | |
| GTATGGAGATTCAGTGATTG+GGG | - | chr2.4:57074143-57074162 | MS.gene67821:intron | 40.0% | |
| TCATGAGAAACATGCAGAAG+AGG | - | chr2.4:57073580-57073599 | MS.gene67821:CDS | 40.0% | |
| TCGACACCTAGTGATAAAGA+GGG | - | chr2.4:57074292-57074311 | MS.gene67821:intron | 40.0% | |
| TGATTGGGGTATGAGAAAGT+TGG | - | chr2.4:57074157-57074176 | MS.gene67821:intron | 40.0% | |
| TTCGACACCTAGTGATAAAG+AGG | - | chr2.4:57074291-57074310 | MS.gene67821:intron | 40.0% | |
| TTCTCAAATTAGTCGTGTCC+TGG | + | chr2.4:57072595-57072614 | None:intergenic | 40.0% | |
| ! | AAAGTATTAAACTCGGGAGG+AGG | + | chr2.4:57074344-57074363 | None:intergenic | 40.0% |
| ! | CACTGTTGCTTACCACAATT+TGG | - | chr2.4:57073868-57073887 | MS.gene67821:intron | 40.0% |
| ! | CCTAAATCAGATGAAAGCAC+TGG | - | chr2.4:57072003-57072022 | MS.gene67821:CDS | 40.0% |
| !! | GACTTTTTGAGGGAGAAGAA+AGG | - | chr2.4:57074116-57074135 | MS.gene67821:intron | 40.0% |
| CAGAAGACAGTTGAGGAAGA+TGG | - | chr2.4:57072840-57072859 | MS.gene67821:CDS | 45.0% | |
| CAGTTTCCACGTCAAGCTTT+AGG | + | chr2.4:57073030-57073049 | None:intergenic | 45.0% | |
| CTTATCAGACATTCACCAGG+TGG | - | chr2.4:57073318-57073337 | MS.gene67821:intron | 45.0% | |
| CTTCGTCCCTCTTTATCACT+AGG | + | chr2.4:57074301-57074320 | None:intergenic | 45.0% | |
| GCTATAGTGTTATGCCGTAG+CGG | - | chr2.4:57073764-57073783 | MS.gene67821:intron | 45.0% | |
| GCTTGACGTGGAAACTGATA+TGG | - | chr2.4:57073033-57073052 | MS.gene67821:intron | 45.0% | |
| GGGAGAAGAAAGGAAGAGTA+TGG | - | chr2.4:57074126-57074145 | MS.gene67821:intron | 45.0% | |
| TATTAAACTCGGGAGGAGGA+GGG | + | chr2.4:57074340-57074359 | None:intergenic | 45.0% | |
| TGAATCCCTAAAGCTTGACG+TGG | - | chr2.4:57073021-57073040 | MS.gene67821:intron | 45.0% | |
| ! | CATTATGGTTTAGGGCAGCA+TGG | + | chr2.4:57073252-57073271 | None:intergenic | 45.0% |
| ! | GATTTGGTCCAATTCCGCTA+CGG | + | chr2.4:57073781-57073800 | None:intergenic | 45.0% |
| ! | GGTCTTATCAGACATTCACC+AGG | - | chr2.4:57073315-57073334 | MS.gene67821:intron | 45.0% |
| AATTAGTCGTGTCCTGGCGT+CGG | + | chr2.4:57072589-57072608 | None:intergenic | 50.0% | |
| GATGATATTGAGGGCGGTGA+TGG | - | chr2.4:57074431-57074450 | MS.gene67821:CDS | 50.0% | |
| GTATTAAACTCGGGAGGAGG+AGG | + | chr2.4:57074341-57074360 | None:intergenic | 50.0% | |
| ! | CATAGCTGTTGTGTCGGTGT+TGG | - | chr2.4:57072549-57072568 | MS.gene67821:intron | 50.0% |
| ! | GTGTTATGCCGTAGCGGAAT+TGG | - | chr2.4:57073770-57073789 | MS.gene67821:intron | 50.0% |
| ATTGATGTGTGTCCGACGCC+AGG | - | chr2.4:57072574-57072593 | MS.gene67821:intron | 55.0% | |
| CCAGACTGTCCAAGAGAGCA+CGG | + | chr2.4:57073296-57073315 | None:intergenic | 55.0% | |
| CGTGCTCTCTTGGACAGTCT+GGG | - | chr2.4:57073294-57073313 | MS.gene67821:intron | 55.0% | |
| TAGCTATGAAGCGCAGTCGC+AGG | - | chr2.4:57072470-57072489 | MS.gene67821:intron | 55.0% | |
| CCGTGCTCTCTTGGACAGTC+TGG | - | chr2.4:57073293-57073312 | MS.gene67821:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 57071955 | 57074511 | 57071955 | ID=MS.gene67821 |
| chr2.4 | mRNA | 57071955 | 57074511 | 57071955 | ID=MS.gene67821.t1;Parent=MS.gene67821 |
| chr2.4 | exon | 57074410 | 57074511 | 57074410 | ID=MS.gene67821.t1.exon1;Parent=MS.gene67821.t1 |
| chr2.4 | CDS | 57074410 | 57074511 | 57074410 | ID=cds.MS.gene67821.t1;Parent=MS.gene67821.t1 |
| chr2.4 | exon | 57073569 | 57073623 | 57073569 | ID=MS.gene67821.t1.exon2;Parent=MS.gene67821.t1 |
| chr2.4 | CDS | 57073569 | 57073623 | 57073569 | ID=cds.MS.gene67821.t1;Parent=MS.gene67821.t1 |
| chr2.4 | exon | 57073399 | 57073455 | 57073399 | ID=MS.gene67821.t1.exon3;Parent=MS.gene67821.t1 |
| chr2.4 | CDS | 57073399 | 57073455 | 57073399 | ID=cds.MS.gene67821.t1;Parent=MS.gene67821.t1 |
| chr2.4 | exon | 57072837 | 57072914 | 57072837 | ID=MS.gene67821.t1.exon4;Parent=MS.gene67821.t1 |
| chr2.4 | CDS | 57072837 | 57072914 | 57072837 | ID=cds.MS.gene67821.t1;Parent=MS.gene67821.t1 |
| chr2.4 | exon | 57071955 | 57072349 | 57071955 | ID=MS.gene67821.t1.exon5;Parent=MS.gene67821.t1 |
| chr2.4 | CDS | 57071955 | 57072349 | 57071955 | ID=cds.MS.gene67821.t1;Parent=MS.gene67821.t1 |
| Gene Sequence |
| Protein sequence |
