AlfalfaGEDB | MS.gene67821

M. sativa cultivar XinJiangDaYe / MS.gene67821

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0019843 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0097159 GO:0110165 GO:1901363 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01250.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67821.t1	XP_003594689.1	91.8	233	14	1	1	228	62	294	4.90E-100	374

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67821.t1	B6J6T7	46.9	98	52	0	72	169	1	98	3.6e-19	96.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67821.t1	A2Q664	91.8	233	14	1	1	228	62	294	3.5e-100	374.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050783	MS.gene67821	0.815515	8.89E-52	-1.69E-46
MS.gene050812	MS.gene67821	0.880674	4.52E-70	-1.69E-46
MS.gene051171	MS.gene67821	0.839312	1.71E-57	-1.69E-46
MS.gene051242	MS.gene67821	0.804622	1.98E-49	-1.69E-46
MS.gene051244	MS.gene67821	0.80472	1.89E-49	-1.69E-46
MS.gene051525	MS.gene67821	0.823545	1.31E-53	-1.69E-46
MS.gene051582	MS.gene67821	0.863883	1.81E-64	-1.69E-46
MS.gene053107	MS.gene67821	0.820097	8.21E-53	-1.69E-46
MS.gene053330	MS.gene67821	0.852121	5.68E-61	-1.69E-46
MS.gene053971	MS.gene67821	0.812642	3.82E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67821.t1	MTR_2g033490	94.850	233	7	2	1	228	62	294	5.21e-157	437

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67821.t1	AT3G17170	69.767	172	52	0	11	182	59	230	5.31e-89	265

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Find 44 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTATTAAACTCGGGAGG+AGG	0.569590	2.4:+57072103	None:intergenic
AAGAAGAATGGGATGATGAA+TGG	0.476855	2.4:-57072060	MS.gene67821:CDS
ACAAAAGTATTAAACTCGGG+AGG	0.675886	2.4:+57072100	None:intergenic
AGAAGAATGGGATGATGAAT+GGG	0.530879	2.4:-57072059	MS.gene67821:CDS
AGCAACAAAAGTATTAAACT+CGG	0.581584	2.4:+57072096	None:intergenic
AGTATGGAGATTCAGTGATT+GGG	0.412799	2.4:-57072302	MS.gene67821:CDS
AGTTTCCACGTCAAGCTTTA+GGG	0.316767	2.4:+57073418	None:intergenic
ATCTGATTATGATGATATTG+AGG	0.526841	2.4:-57072023	MS.gene67821:CDS
CAACGAGTTCAAGACTTTGT+TGG	0.383716	2.4:-57072194	MS.gene67821:CDS
CACAGATGATGAAGAAGAAT+GGG	0.451353	2.4:-57072071	MS.gene67821:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATACTTCCGATTATTC+TGG	-	chr2.4:57074059-57074078	MS.gene67821:intron	30.0%
AGTAATGTCAAATGCTATGA+AGG	+	chr2.4:57072626-57072645	None:intergenic	30.0%
CACGTTACTGAATCTTTAAA+GGG	+	chr2.4:57073495-57073514	None:intergenic	30.0%
CAGTAACATGACAAACTATT+TGG	-	chr2.4:57073195-57073214	MS.gene67821:intron	30.0%
CATCTAGATTATCGTCATTA+TGG	+	chr2.4:57073267-57073286	None:intergenic	30.0%
CATTATAGACGATGATGATT+TGG	-	chr2.4:57074460-57074479	MS.gene67821:CDS	30.0%
CCTGTACGAAAATGAAAATT+TGG	+	chr2.4:57072992-57073011	None:intergenic	30.0%
CTGGATTAATGTTATGACTT+TGG	-	chr2.4:57072958-57072977	MS.gene67821:intron	30.0%
CTTCTTTCTTATCTTTCTTC+CGG	+	chr2.4:57071966-57071985	None:intergenic	30.0%
CTTGAACTCGTTGATATATT+TGG	+	chr2.4:57074243-57074262	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	57071955	57074511	57071955	ID=MS.gene67821
chr2.4	mRNA	57071955	57074511	57071955	ID=MS.gene67821.t1;Parent=MS.gene67821
chr2.4	exon	57074410	57074511	57074410	ID=MS.gene67821.t1.exon1;Parent=MS.gene67821.t1
chr2.4	CDS	57074410	57074511	57074410	ID=cds.MS.gene67821.t1;Parent=MS.gene67821.t1
chr2.4	exon	57073569	57073623	57073569	ID=MS.gene67821.t1.exon2;Parent=MS.gene67821.t1
chr2.4	CDS	57073569	57073623	57073569	ID=cds.MS.gene67821.t1;Parent=MS.gene67821.t1
chr2.4	exon	57073399	57073455	57073399	ID=MS.gene67821.t1.exon3;Parent=MS.gene67821.t1
chr2.4	CDS	57073399	57073455	57073399	ID=cds.MS.gene67821.t1;Parent=MS.gene67821.t1
chr2.4	exon	57072837	57072914	57072837	ID=MS.gene67821.t1.exon4;Parent=MS.gene67821.t1
chr2.4	CDS	57072837	57072914	57072837	ID=cds.MS.gene67821.t1;Parent=MS.gene67821.t1
chr2.4	exon	57071955	57072349	57071955	ID=MS.gene67821.t1.exon5;Parent=MS.gene67821.t1
chr2.4	CDS	57071955	57072349	57071955	ID=cds.MS.gene67821.t1;Parent=MS.gene67821.t1

Gene Sequence

>MS.gene67821

ATGAATGCCCGGAAGAAAGATAAGAAAGAAGATACTCATAGTTTTGTGCCTAAATCAGATGAAAGCACTGGCTTCTTCCCTGAATCTGTTCTTCTTAAAAAGGTTGTTTTTTTTACACATGCCCTTTATTTGATTTTTGTTTATTACTCATTTTTGTGTGTTTTTCTTCAATTTTTCTTTGTTTTGTTTTGAGAATTAGATACCCTTTTGAAGATTTATTGAATTTATACTTATATATTGGTAGAATTTGCAATACCCTCAAATTTATTTTGGTATACTATACATTTTAGTATAATTTCTGCTAGTTTTTGTTGGTTTTGTTTTAAGTATAAGATAGCCTTTTGAAGATTCATTAGAATTTGCACTTGTAATGTTACTACTAAGCATTTTTCTTCGAAGCATTTTTTCAATATTACAAACTCTTATCTTGTTCTGTTTTGGTTAGAAGGGAGAGTAATTCACTATTTAGGCTAAGGAAAAACACAAATTTGCCCATTTTGTGGTGTATGACTTGTTAGCTATGAAGCGCAGTCGCAGGACACGAACACGCTGACACATATAATAATTTGAGAAAATGACATAATTAAGTGTAATCATAGCTGTTGTGTCGGTGTTGGACATTGATGTGTGTCCGACGCCAGGACACGACTAATTTGAGAAGTGTCTGTCCTTCATAGCATTTGACATTACTTCATAATTGTCGTTGTTGCCTCGCTTGTATGCAAAATTTAGTTTTTTTTTAATCGTGTCTTTGTTCTTTATGAGATGAATTTTCTCATTGATATTCAATATGGGTTTTCAACTGAAATGTATTTTTAATTTTTTATCCTTTATGATATGAATTTTCTCATTGATATTCAATTTGGGTTTTCAACTTGTCATTTTCAGAAGACAGTTGAGGAAGATGGTAAACTTCTTCCGGAGTTTGAAGATGATGATGAAAGTGAGTGATTATTGTTCAGTTATTCTGTTTGTTTTTGTTTTTTTGGTAGTCTAAATAGTTCTGGATTAATGTTATGACTTTGGCCCTTATTCCAAATTTTCATTTTCGTACAGGAAAGCTCTATGAATCCCTAAAGCTTGACGTGGAAACTGATATGGACGTTGAACTATGTAAGTAAATGCTCTCTCATTTATGTTAGAGATGATATGAAACTATTGAATTGATGCAATTTTTATTCATAGGAATTTCATAAGTACTCTTTATTGTATATGTATGGTTATTCAAATTATCAAAAAACAGTAACATGACAAACTATTTGGTTATCCGACCTTGTTAGATAATGTTTACAAACCATGCTGCCCTAAACCATAATGACGATAATCTAGATGTTATAACCGTGCTCTCTTGGACAGTCTGGGTCTTATCAGACATTCACCAGGTGGATTTAGATCCATCTTTTGCTAACTTTTGGCATTTATTTACGCTCATTAGATTGATACCTCTATGTCATTTGTTCATGACATGTCGATCCTCTAATAATTTTTTTTATTTGATAATATCTGTCAACTGTTGTGCGTGTTTGTGTGAACAGTTCCCTTTAAAGATTCAGTAACGTGCTCTATCTCACAGTACTCTGCTTCTTTGTCTATGCAGTGCGCCACTATGAGATTGTTTACTTGATTCATGAGAAACATGCAGAAGAGGTTGTTGCTGTTAATGAGAAAGTTCAAGGTAACCTTTCAAAGATTGCAATTAACCTTTTACATTTTTTTTCGAATCTATTTATATTCTCGTGATGCCAAATAGAATGAGTTCATTAGTTTGCCATTTCCATCTGGCATTCATGTCACTATTGTTAAATATAGGCTATAGTGTTATGCCGTAGCGGAATTGGACCAAATCATTATTGTTCTGTATTACACTATTTAGTACAAAATGTTGTCAAATAGCAGCTATGACGTCACTTTAGCACTGTTGCTTACCACAATTTGGCAATACAGTTGACGAAAAAAGCTGCTATTTGAACTTAAGTTCTTTAATAATAACCTTTGCTGTGTATACAATTATTTGACATACGAGTCGATTCTAAAAAGTTTCTACAAAGTGCATATTAAGTATTTAACCAAAAAAATCATTTTAACTTGATTTTATCTTCTAACTAAACATACTTCCGATTATTCTGGTTCTTTTTTATAATTTTTGTTCAAAACATTTGCAGACTTTTTGAGGGAGAAGAAAGGAAGAGTATGGAGATTCAGTGATTGGGGTATGAGAAAGTTGGCTTACAAAATACAGAAAGCTAACAACGCACACTACATTTTGATGAACTTCGAGATGGACGCCAAATATATCAACGAGTTCAAGACTTTGTTGGACAAAGATGAAAGAGTTATTCGACACCTAGTGATAAAGAGGGACGAAGCAATCACTGAAGATTGCCCTCCTCCTCCCGAGTTTAATACTTTTGTTGCTAGCACAGATGATGAAGAAGAATGGGATGATGAATGGGATGATGAAGATGGATCTGATTATGATGATATTGAGGGCGGTGATGGAATTTTCATTATAGACGATGATGATTTGGAAATATCAGAGGGCCAGAAAATAGCATAA

Protein sequence

>MS.gene67821.t1

MNARKKDKKEDTHSFVPKSDESTGFFPESVLLKKKTVEEDGKLLPEFEDDDERKLYESLKLDVETDMDVELLRHYEIVYLIHEKHAEEVVAVNEKVQDFLREKKGRVWRFSDWGMRKLAYKIQKANNAHYILMNFEMDAKYINEFKTLLDKDERVIRHLVIKRDEAITEDCPPPPEFNTFVASTDDEEEWDDEWDDEDGSDYDDIEGGDGIFIIDDDDLEISEGQKIA