Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68154.t1 | XP_003604029.1 | 97.9 | 238 | 5 | 0 | 6 | 243 | 21 | 258 | 8.90E-124 | 453 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68154.t1 | P45434 | 60.2 | 241 | 89 | 3 | 7 | 243 | 19 | 256 | 9.4e-74 | 278.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68154.t1 | B7FIS2 | 97.9 | 238 | 5 | 0 | 6 | 243 | 21 | 258 | 6.4e-124 | 453.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene68154 | -0.817414 | 3.34E-52 | -1.69E-46 |
| MS.gene049153 | MS.gene68154 | -0.812641 | 3.83E-51 | -1.69E-46 |
| MS.gene049356 | MS.gene68154 | -0.800045 | 1.73E-48 | -1.69E-46 |
| MS.gene051860 | MS.gene68154 | -0.80759 | 4.69E-50 | -1.69E-46 |
| MS.gene05316 | MS.gene68154 | -0.810059 | 1.39E-50 | -1.69E-46 |
| MS.gene054010 | MS.gene68154 | -0.801513 | 8.69E-49 | -1.69E-46 |
| MS.gene054011 | MS.gene68154 | -0.802986 | 4.32E-49 | -1.69E-46 |
| MS.gene054012 | MS.gene68154 | -0.809305 | 2.02E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene68154 | -0.808522 | 2.97E-50 | -1.69E-46 |
| MS.gene055369 | MS.gene68154 | -0.801154 | 1.03E-48 | -1.69E-46 |
| MS.gene055604 | MS.gene68154 | -0.825277 | 5.12E-54 | -1.69E-46 |
| MS.gene056723 | MS.gene68154 | -0.814875 | 1.23E-51 | -1.69E-46 |
| MS.gene056902 | MS.gene68154 | -0.814095 | 1.83E-51 | -1.69E-46 |
| MS.gene057396 | MS.gene68154 | -0.811285 | 7.56E-51 | -1.69E-46 |
| MS.gene057469 | MS.gene68154 | -0.811117 | 8.22E-51 | -1.69E-46 |
| MS.gene058949 | MS.gene68154 | -0.830775 | 2.43E-55 | -1.69E-46 |
| MS.gene059420 | MS.gene68154 | -0.818734 | 1.68E-52 | -1.69E-46 |
| MS.gene059807 | MS.gene68154 | -0.809552 | 1.79E-50 | -1.69E-46 |
| MS.gene059876 | MS.gene68154 | -0.842047 | 3.28E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68154.t1 | MTR_3g117740 | 97.899 | 238 | 5 | 0 | 6 | 243 | 21 | 258 | 3.91e-172 | 474 |
| MS.gene68154.t1 | MTR_4g075340 | 74.459 | 231 | 54 | 3 | 6 | 235 | 21 | 247 | 1.02e-108 | 314 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68154.t1 | AT2G16595 | 59.565 | 230 | 86 | 4 | 6 | 234 | 19 | 242 | 1.72e-89 | 265 |
| MS.gene68154.t1 | AT2G21160 | 60.251 | 239 | 88 | 3 | 9 | 243 | 21 | 256 | 2.23e-83 | 249 |
| MS.gene68154.t1 | AT2G21160 | 60.241 | 166 | 59 | 3 | 9 | 170 | 21 | 183 | 3.71e-65 | 201 |
Find 58 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACATTTCGCAATATTCTT+AGG | 0.152346 | 3.1:-92642259 | None:intergenic |
| TTTGAATGTTGTTGCAATTA+AGG | 0.192749 | 3.1:+92642536 | MS.gene68154:CDS |
| TTGCTGACAGAAAATATATA+TGG | 0.249255 | 3.1:-92643793 | None:intergenic |
| CTACTTGGGCTATGGATTAA+TGG | 0.301378 | 3.1:+92644092 | MS.gene68154:CDS |
| TTCTGTCAGCAAGTTCTTGC+AGG | 0.320879 | 3.1:+92643804 | MS.gene68154:CDS |
| GTGCAATTCCAAGAGTAAAA+AGG | 0.335460 | 3.1:-92644061 | None:intergenic |
| ACAGCGATGGTGTCAATTCC+TGG | 0.351993 | 3.1:-92642232 | None:intergenic |
| TGTTCAAAACCTTACTGTTC+AGG | 0.353087 | 3.1:+92642593 | MS.gene68154:CDS |
| TACCAAAACACTTTCTATAA+TGG | 0.355170 | 3.1:+92643987 | MS.gene68154:CDS |
| TTCTTATCCTACTTGGGCTA+TGG | 0.361313 | 3.1:+92644084 | MS.gene68154:CDS |
| TGCCATTATAGAAAGTGTTT+TGG | 0.377178 | 3.1:-92643989 | None:intergenic |
| TCAAATACATAACCTGTCTA+AGG | 0.380877 | 3.1:+92644115 | MS.gene68154:CDS |
| AATTGCAACAACATTCAAAC+TGG | 0.382031 | 3.1:-92642532 | None:intergenic |
| CTCCGTGCCATCTTCAGTTC+AGG | 0.401803 | 3.1:+92643762 | MS.gene68154:CDS |
| ATTGCACTTCTTATCCTACT+TGG | 0.405932 | 3.1:+92644077 | MS.gene68154:CDS |
| TACATTTCGCAATATTCTTA+GGG | 0.406141 | 3.1:-92642258 | None:intergenic |
| TGTTCTTCTTGCTAGTTGCT+AGG | 0.413568 | 3.1:+92642098 | MS.gene68154:CDS |
| CCTGGACCATTTGATCTTGT+GGG | 0.422904 | 3.1:+92643933 | MS.gene68154:CDS |
| CTTAGTCCCAACTTCAACCT+TGG | 0.428972 | 3.1:-92644253 | None:intergenic |
| TTTATTTGATGTAGTGGTAA+AGG | 0.436615 | 3.1:+92642359 | MS.gene68154:intron |
| AGATCTTCCAAGGTTGAAGT+TGG | 0.438581 | 3.1:+92644246 | MS.gene68154:CDS |
| GCCTGGACCATTTGATCTTG+TGG | 0.445173 | 3.1:+92643932 | MS.gene68154:intron |
| TTCAATGGATGAATGGCTTC+AGG | 0.447599 | 3.1:+92644287 | MS.gene68154:CDS |
| GGGACCTTCCCTTCTGCCCC+AGG | 0.448790 | 3.1:+92642214 | MS.gene68154:CDS |
| TAAGACTACAGATGCTTCAA+TGG | 0.461758 | 3.1:+92644272 | MS.gene68154:CDS |
| AACATTGCATTACCTTAGAC+AGG | 0.473431 | 3.1:-92644127 | None:intergenic |
| ACCATTGAAGTTGTTGAGCC+TGG | 0.474828 | 3.1:+92644011 | MS.gene68154:CDS |
| GATCTTCCAAGGTTGAAGTT+GGG | 0.475146 | 3.1:+92644247 | MS.gene68154:CDS |
| TGCTGACAGAAAATATATAT+GGG | 0.475416 | 3.1:-92643792 | None:intergenic |
| CAGATGCTTCAATGGATGAA+TGG | 0.477366 | 3.1:+92644280 | MS.gene68154:CDS |
| TTATTTGATGTAGTGGTAAA+GGG | 0.480002 | 3.1:+92642360 | MS.gene68154:intron |
| TTGCACTTCTTATCCTACTT+GGG | 0.486809 | 3.1:+92644078 | MS.gene68154:CDS |
| GTGAATGACATCGGCATTGT+TGG | 0.490588 | 3.1:+92642157 | MS.gene68154:CDS |
| GATGAAGCTGTGGAGAATAC+TGG | 0.499870 | 3.1:+92642130 | MS.gene68154:CDS |
| CAGCGATGGTGTCAATTCCT+GGG | 0.503598 | 3.1:-92642231 | None:intergenic |
| GTGTCAATTCCTGGGGCAGA+AGG | 0.517036 | 3.1:-92642223 | None:intergenic |
| ATGGTGCCCACAAGATCAAA+TGG | 0.518920 | 3.1:-92643939 | None:intergenic |
| CAATTTCTACCTGAACAGTA+AGG | 0.525707 | 3.1:-92642602 | None:intergenic |
| GAAGAGGCAGAGCTACTTGT+CGG | 0.527005 | 3.1:+92642387 | MS.gene68154:CDS |
| AGTGGTAAAGGGTGGTGAAG+AGG | 0.534718 | 3.1:+92642371 | MS.gene68154:intron |
| ACCAGGCTCAACAACTTCAA+TGG | 0.539719 | 3.1:-92644012 | None:intergenic |
| CCCACAAGATCAAATGGTCC+AGG | 0.542064 | 3.1:-92643933 | None:intergenic |
| AAAGTAGCCTGAACTGAAGA+TGG | 0.549379 | 3.1:-92643769 | None:intergenic |
| ACAAGAAGACGATGATCGTA+TGG | 0.565759 | 3.1:-92642573 | None:intergenic |
| AATTCCTGGGGCAGAAGGGA+AGG | 0.572912 | 3.1:-92642218 | None:intergenic |
| GATGCTCAAGACTTTGCTGA+TGG | 0.576315 | 3.1:+92642193 | MS.gene68154:CDS |
| ATGCTCAAGACTTTGCTGAT+GGG | 0.587042 | 3.1:+92642194 | MS.gene68154:CDS |
| CATTAATCCATAGCCCAAGT+AGG | 0.597505 | 3.1:-92644091 | None:intergenic |
| AGCCTGAACTGAAGATGGCA+CGG | 0.612528 | 3.1:-92643764 | None:intergenic |
| TGTCAATTCCTGGGGCAGAA+GGG | 0.617861 | 3.1:-92642222 | None:intergenic |
| GAAGACGATGATCGTATGGA+AGG | 0.621122 | 3.1:-92642569 | None:intergenic |
| ATTCTTAGGGAACACAGCGA+TGG | 0.640325 | 3.1:-92642245 | None:intergenic |
| TTGGTCTATCTCGTATACAA+TGG | 0.646480 | 3.1:-92643958 | None:intergenic |
| GTGTCAGTCAGATGAAGCTG+TGG | 0.648091 | 3.1:+92642120 | MS.gene68154:CDS |
| TCCATACTGAATAAAACACC+AGG | 0.656320 | 3.1:-92644029 | None:intergenic |
| AGCGATGGTGTCAATTCCTG+GGG | 0.656423 | 3.1:-92642230 | None:intergenic |
| ACTGGTGAAGTGAATGACAT+CGG | 0.672577 | 3.1:+92642148 | MS.gene68154:CDS |
| TTTGATGTAGTGGTAAAGGG+TGG | 0.674392 | 3.1:+92642363 | MS.gene68154:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAATAAATAGATTTAATT+TGG | - | chr3.1:92642640-92642659 | None:intergenic | 10.0% |
| !! | AAAATAAAAACTAAAGAAAC+AGG | + | chr3.1:92643228-92643247 | MS.gene68154:intron | 15.0% |
| !! | AAATAAAAACTAAAGAAACA+GGG | + | chr3.1:92643229-92643248 | MS.gene68154:intron | 15.0% |
| !!! | AATAGTATATTGATTATTAC+AGG | - | chr3.1:92642740-92642759 | None:intergenic | 15.0% |
| !!! | TAATACTTTTTTTTTGTGTA+AGG | - | chr3.1:92643699-92643718 | None:intergenic | 15.0% |
| !! | AATAAAAACTAAAGAAACAG+GGG | + | chr3.1:92643230-92643249 | MS.gene68154:intron | 20.0% |
| !! | AGATCTTTCTATATAAGATA+AGG | + | chr3.1:92642282-92642301 | MS.gene68154:intron | 20.0% |
| !! | CAAACTTATAGTTAATATGT+TGG | + | chr3.1:92643563-92643582 | MS.gene68154:intron | 20.0% |
| !! | TTATACATGTGTGTTAAAAT+GGG | + | chr3.1:92643360-92643379 | MS.gene68154:intron | 20.0% |
| !! | TTGACAAATCAATAATGTAA+AGG | - | chr3.1:92644440-92644459 | None:intergenic | 20.0% |
| !! | TTTCTATATAAGATAAGGTT+TGG | + | chr3.1:92642287-92642306 | MS.gene68154:intron | 20.0% |
| !!! | ACAATATATTCTTTTAAGAC+TGG | + | chr3.1:92643101-92643120 | MS.gene68154:intron | 20.0% |
| !!! | ACTAAAGTATTTGCTATATA+TGG | + | chr3.1:92642815-92642834 | MS.gene68154:intron | 20.0% |
| !!! | ATAGATTTAATTTGGAGATT+TGG | - | chr3.1:92642632-92642651 | None:intergenic | 20.0% |
| !!! | CAATATATTCTTTTAAGACT+GGG | + | chr3.1:92643102-92643121 | MS.gene68154:intron | 20.0% |
| !!! | CTAAAGTATTTGCTATATAT+GGG | + | chr3.1:92642816-92642835 | MS.gene68154:intron | 20.0% |
| !!! | CTTATTTTCTAATCAAATCA+AGG | + | chr3.1:92642908-92642927 | MS.gene68154:intron | 20.0% |
| ! | AAAATTAACACAAGATTGTC+AGG | - | chr3.1:92642333-92642352 | None:intergenic | 25.0% |
| ! | AAATTAACACAAGATTGTCA+GGG | - | chr3.1:92642332-92642351 | None:intergenic | 25.0% |
| ! | ATACACAAATCAGTATGAAA+AGG | - | chr3.1:92644401-92644420 | None:intergenic | 25.0% |
| ! | ATGACAGTAAAATATCATCA+AGG | + | chr3.1:92643192-92643211 | MS.gene68154:intron | 25.0% |
| ! | CTTATACATGTGTGTTAAAA+TGG | + | chr3.1:92643359-92643378 | MS.gene68154:intron | 25.0% |
| ! | TACACAAATCAGTATGAAAA+GGG | - | chr3.1:92644400-92644419 | None:intergenic | 25.0% |
| ! | TACATTTCGCAATATTCTTA+GGG | - | chr3.1:92642261-92642280 | None:intergenic | 25.0% |
| ! | TACCAAAACACTTTCTATAA+TGG | + | chr3.1:92643987-92644006 | MS.gene68154:CDS | 25.0% |
| ! | TATAAGTTTGACAGAGTTAT+TGG | - | chr3.1:92643553-92643572 | None:intergenic | 25.0% |
| ! | TGACAGTAAAATATCATCAA+GGG | + | chr3.1:92643193-92643212 | MS.gene68154:intron | 25.0% |
| ! | TGCTGACAGAAAATATATAT+GGG | - | chr3.1:92643795-92643814 | None:intergenic | 25.0% |
| ! | TGTGCATATCTTTGTATAAA+TGG | - | chr3.1:92643084-92643103 | None:intergenic | 25.0% |
| ! | TGTTTCAATCAAAGTTATCA+TGG | - | chr3.1:92642688-92642707 | None:intergenic | 25.0% |
| ! | TTACATTTCGCAATATTCTT+AGG | - | chr3.1:92642262-92642281 | None:intergenic | 25.0% |
| ! | TTATTTGATGTAGTGGTAAA+GGG | + | chr3.1:92642360-92642379 | MS.gene68154:intron | 25.0% |
| ! | TTGCTGACAGAAAATATATA+TGG | - | chr3.1:92643796-92643815 | None:intergenic | 25.0% |
| ! | TTTATTTGATGTAGTGGTAA+AGG | + | chr3.1:92642359-92642378 | MS.gene68154:intron | 25.0% |
| ! | TTTGAATGTTGTTGCAATTA+AGG | + | chr3.1:92642536-92642555 | MS.gene68154:CDS | 25.0% |
| !!! | CATTTTAACACACATGTATA+AGG | - | chr3.1:92643361-92643380 | None:intergenic | 25.0% |
| !!! | TTAATCTCTGAAATGATTTG+TGG | + | chr3.1:92642764-92642783 | MS.gene68154:intron | 25.0% |
| !!! | TTATAGAAAGTGTTTTGGTA+TGG | - | chr3.1:92643987-92644006 | None:intergenic | 25.0% |
| !!! | TTGTTGTTTATTTGATGTAG+TGG | + | chr3.1:92642353-92642372 | MS.gene68154:intron | 25.0% |
| AAATCTTCCATCCAAACATA+CGG | - | chr3.1:92642871-92642890 | None:intergenic | 30.0% | |
| AATAATACTCACGTGGTAAA+TGG | - | chr3.1:92644175-92644194 | None:intergenic | 30.0% | |
| AATTAACACAAGATTGTCAG+GGG | - | chr3.1:92642331-92642350 | None:intergenic | 30.0% | |
| AATTGCAACAACATTCAAAC+TGG | - | chr3.1:92642535-92642554 | None:intergenic | 30.0% | |
| ACACAAATCAGTATGAAAAG+GGG | - | chr3.1:92644399-92644418 | None:intergenic | 30.0% | |
| AGATCTATGTATGTACCAAA+TGG | - | chr3.1:92643491-92643510 | None:intergenic | 30.0% | |
| AGGCATGATAAATATAGAAG+GGG | - | chr3.1:92643890-92643909 | None:intergenic | 30.0% | |
| AGTACCATATAACATGGAAT+AGG | - | chr3.1:92643439-92643458 | None:intergenic | 30.0% | |
| ATAGATCTCTAAGTTCATCT+GGG | + | chr3.1:92643503-92643522 | MS.gene68154:intron | 30.0% | |
| ATATGCAAATAATACTCACG+TGG | - | chr3.1:92644182-92644201 | None:intergenic | 30.0% | |
| ATTCCCTATTCCATGTTATA+TGG | + | chr3.1:92643432-92643451 | MS.gene68154:intron | 30.0% | |
| CAGGCATGATAAATATAGAA+GGG | - | chr3.1:92643891-92643910 | None:intergenic | 30.0% | |
| GAAAACAAAAAGATCTTCCA+AGG | + | chr3.1:92644236-92644255 | MS.gene68154:intron | 30.0% | |
| GGAATCTGAATGAAATAAGA+GGG | - | chr3.1:92643417-92643436 | None:intergenic | 30.0% | |
| GGATATCAAAATACAAGGTT+AGG | - | chr3.1:92644472-92644491 | None:intergenic | 30.0% | |
| GTACCATATAACATGGAATA+GGG | - | chr3.1:92643438-92643457 | None:intergenic | 30.0% | |
| TAATTGCTTTACCGTATGTT+TGG | + | chr3.1:92642857-92642876 | MS.gene68154:intron | 30.0% | |
| TATAGCAAATACTTTAGTGC+AGG | - | chr3.1:92642813-92642832 | None:intergenic | 30.0% | |
| TATGTATGTACCAAATGGTT+GGG | - | chr3.1:92643486-92643505 | None:intergenic | 30.0% | |
| TCAAATACATAACCTGTCTA+AGG | + | chr3.1:92644115-92644134 | MS.gene68154:CDS | 30.0% | |
| TCAGGCATGATAAATATAGA+AGG | - | chr3.1:92643892-92643911 | None:intergenic | 30.0% | |
| TGTCACAAGACACAAATAAA+AGG | - | chr3.1:92642466-92642485 | None:intergenic | 30.0% | |
| TGTTGTATGGATCAATTTCA+GGG | + | chr3.1:92642505-92642524 | MS.gene68154:intron | 30.0% | |
| TTGTTGTATGGATCAATTTC+AGG | + | chr3.1:92642504-92642523 | MS.gene68154:intron | 30.0% | |
| ! | AATCAGAGTACCATATAACA+TGG | - | chr3.1:92643445-92643464 | None:intergenic | 30.0% |
| ! | AATGGAAGAGTATGTTCATA+TGG | - | chr3.1:92643066-92643085 | None:intergenic | 30.0% |
| ! | ATTTTGCAGGTTTTCAACAA+TGG | + | chr3.1:92643739-92643758 | MS.gene68154:intron | 30.0% |
| ! | GTGTTGTGTTATAATTTTGC+AGG | + | chr3.1:92643726-92643745 | MS.gene68154:intron | 30.0% |
| ! | TATGTTTGGATGGAAGATTT+TGG | + | chr3.1:92642871-92642890 | MS.gene68154:intron | 30.0% |
| ! | TCTGTTTTCCTTTTTACTCT+TGG | + | chr3.1:92644053-92644072 | MS.gene68154:CDS | 30.0% |
| !! | TAACACTCGATTTTGTTGTA+TGG | + | chr3.1:92642492-92642511 | MS.gene68154:intron | 30.0% |
| !!! | AACCTTGTATTTTGATATCC+AGG | + | chr3.1:92644472-92644491 | MS.gene68154:intron | 30.0% |
| !!! | ACCTTGTATTTTGATATCCA+GGG | + | chr3.1:92644473-92644492 | MS.gene68154:intron | 30.0% |
| !!! | TGCCATTATAGAAAGTGTTT+TGG | - | chr3.1:92643992-92644011 | None:intergenic | 30.0% |
| AACATTGCATTACCTTAGAC+AGG | - | chr3.1:92644130-92644149 | None:intergenic | 35.0% | |
| ACAAATCAGTATGAAAAGGG+GGG | - | chr3.1:92644397-92644416 | None:intergenic | 35.0% | |
| ACAACAAAATCGAGTGTTAG+AGG | - | chr3.1:92642491-92642510 | None:intergenic | 35.0% | |
| ATATTGACAAAGTATGCACC+AGG | + | chr3.1:92643168-92643187 | MS.gene68154:intron | 35.0% | |
| ATTGCACTTCTTATCCTACT+TGG | + | chr3.1:92644077-92644096 | MS.gene68154:CDS | 35.0% | |
| CAATTTCTACCTGAACAGTA+AGG | - | chr3.1:92642605-92642624 | None:intergenic | 35.0% | |
| CACAAATCAGTATGAAAAGG+GGG | - | chr3.1:92644398-92644417 | None:intergenic | 35.0% | |
| CATAGATCTCTAAGTTCATC+TGG | + | chr3.1:92643502-92643521 | MS.gene68154:intron | 35.0% | |
| CTATGTATGTACCAAATGGT+TGG | - | chr3.1:92643487-92643506 | None:intergenic | 35.0% | |
| CTTACTGTTCAGGTAGAAAT+TGG | + | chr3.1:92642603-92642622 | MS.gene68154:intron | 35.0% | |
| GGGAATCTGAATGAAATAAG+AGG | - | chr3.1:92643418-92643437 | None:intergenic | 35.0% | |
| GTGCAATTCCAAGAGTAAAA+AGG | - | chr3.1:92644064-92644083 | None:intergenic | 35.0% | |
| TAAGACTACAGATGCTTCAA+TGG | + | chr3.1:92644272-92644291 | MS.gene68154:CDS | 35.0% | |
| TAAGGATTGTTAGATGTACG+AGG | - | chr3.1:92643343-92643362 | None:intergenic | 35.0% | |
| TATTGACAAAGTATGCACCA+GGG | + | chr3.1:92643169-92643188 | MS.gene68154:intron | 35.0% | |
| TCCATACTGAATAAAACACC+AGG | - | chr3.1:92644032-92644051 | None:intergenic | 35.0% | |
| TCCCTGGATATCAAAATACA+AGG | - | chr3.1:92644477-92644496 | None:intergenic | 35.0% | |
| TCTGAATGAAATAAGAGGGA+AGG | - | chr3.1:92643413-92643432 | None:intergenic | 35.0% | |
| TGAATAGCAACTCAAGGAAT+TGG | - | chr3.1:92643279-92643298 | None:intergenic | 35.0% | |
| TGTGTGTTAAAATGGGTATG+AGG | + | chr3.1:92643367-92643386 | MS.gene68154:intron | 35.0% | |
| TGTTCAAAACCTTACTGTTC+AGG | + | chr3.1:92642593-92642612 | MS.gene68154:CDS | 35.0% | |
| TTGCACTTCTTATCCTACTT+GGG | + | chr3.1:92644078-92644097 | MS.gene68154:CDS | 35.0% | |
| TTGGATGAATTAGTCGATTG+TGG | + | chr3.1:92643610-92643629 | MS.gene68154:intron | 35.0% | |
| TTGGTCTATCTCGTATACAA+TGG | - | chr3.1:92643961-92643980 | None:intergenic | 35.0% | |
| ! | AGTTGCTATTCACCATCTAT+GGG | + | chr3.1:92643287-92643306 | MS.gene68154:intron | 35.0% |
| ! | GAAGAGTATGTTCATATGGA+GGG | - | chr3.1:92643062-92643081 | None:intergenic | 35.0% |
| ! | TGATATTTTACTGTCATCCC+TGG | - | chr3.1:92643189-92643208 | None:intergenic | 35.0% |
| !! | CTTGCTTTTGCTAGTTCTTT+TGG | + | chr3.1:92643591-92643610 | MS.gene68154:intron | 35.0% |
| !!! | AAGTGTTTTGGTATGGATGT+TGG | - | chr3.1:92643980-92643999 | None:intergenic | 35.0% |
| !!! | CAAGGTTTTGCTGTTTTAGT+AGG | + | chr3.1:92643135-92643154 | MS.gene68154:intron | 35.0% |
| AAAGTAGCCTGAACTGAAGA+TGG | - | chr3.1:92643772-92643791 | None:intergenic | 40.0% | |
| ACAAGAAGACGATGATCGTA+TGG | - | chr3.1:92642576-92642595 | None:intergenic | 40.0% | |
| ACTGGTGAAGTGAATGACAT+CGG | + | chr3.1:92642148-92642167 | MS.gene68154:CDS | 40.0% | |
| AGATCTTCCAAGGTTGAAGT+TGG | + | chr3.1:92644246-92644265 | MS.gene68154:CDS | 40.0% | |
| AGATGGTGAATAGCAACTCA+AGG | - | chr3.1:92643285-92643304 | None:intergenic | 40.0% | |
| ATGCTCAAGACTTTGCTGAT+GGG | + | chr3.1:92642194-92642213 | MS.gene68154:CDS | 40.0% | |
| ATGCTTCAAATGTCTGCATG+AGG | + | chr3.1:92643852-92643871 | MS.gene68154:intron | 40.0% | |
| CACAGCAAAAGAAAATGGTC+AGG | - | chr3.1:92643910-92643929 | None:intergenic | 40.0% | |
| CAGATGCTTCAATGGATGAA+TGG | + | chr3.1:92644280-92644299 | MS.gene68154:CDS | 40.0% | |
| CATTAATCCATAGCCCAAGT+AGG | - | chr3.1:92644094-92644113 | None:intergenic | 40.0% | |
| GATCTTCCAAGGTTGAAGTT+GGG | + | chr3.1:92644247-92644266 | MS.gene68154:CDS | 40.0% | |
| GGAGAGCTAAGTTCATATCA+TGG | - | chr3.1:92643035-92643054 | None:intergenic | 40.0% | |
| TATGTTCATATGGAGGGTTC+TGG | - | chr3.1:92643056-92643075 | None:intergenic | 40.0% | |
| TGCTTTACCGTATGTTTGGA+TGG | + | chr3.1:92642861-92642880 | MS.gene68154:intron | 40.0% | |
| TGTTCTTCTTGCTAGTTGCT+AGG | + | chr3.1:92642098-92642117 | MS.gene68154:CDS | 40.0% | |
| TTCAATGGATGAATGGCTTC+AGG | + | chr3.1:92644287-92644306 | MS.gene68154:CDS | 40.0% | |
| TTCTTATCCTACTTGGGCTA+TGG | + | chr3.1:92644084-92644103 | MS.gene68154:CDS | 40.0% | |
| TTTGATGTAGTGGTAAAGGG+TGG | + | chr3.1:92642363-92642382 | MS.gene68154:intron | 40.0% | |
| ! | CTACTTGGGCTATGGATTAA+TGG | + | chr3.1:92644092-92644111 | MS.gene68154:CDS | 40.0% |
| ! | GAGTTGCTATTCACCATCTA+TGG | + | chr3.1:92643286-92643305 | MS.gene68154:intron | 40.0% |
| ! | GGAAGAGTATGTTCATATGG+AGG | - | chr3.1:92643063-92643082 | None:intergenic | 40.0% |
| ! | GTTTGGATGGAAGATTTTGG+TGG | + | chr3.1:92642874-92642893 | MS.gene68154:intron | 40.0% |
| !! | CATCAGCTCTGGAAAAAGTA+AGG | - | chr3.1:92643835-92643854 | None:intergenic | 40.0% |
| !! | GCCTGGTGTTTTATTCAGTA+TGG | + | chr3.1:92644028-92644047 | MS.gene68154:CDS | 40.0% |
| AAACATCCTGTGCCCATAGA+TGG | - | chr3.1:92643302-92643321 | None:intergenic | 45.0% | |
| AACTTTGAATGCAGCAGGGT+TGG | + | chr3.1:92643253-92643272 | MS.gene68154:intron | 45.0% | |
| ACCAGGCTCAACAACTTCAA+TGG | - | chr3.1:92644015-92644034 | None:intergenic | 45.0% | |
| ACCATTGAAGTTGTTGAGCC+TGG | + | chr3.1:92644011-92644030 | MS.gene68154:CDS | 45.0% | |
| ACTGAGTATATGCAGTTCCC+TGG | - | chr3.1:92644493-92644512 | None:intergenic | 45.0% | |
| ATGGTGCCCACAAGATCAAA+TGG | - | chr3.1:92643942-92643961 | None:intergenic | 45.0% | |
| ATTCTTAGGGAACACAGCGA+TGG | - | chr3.1:92642248-92642267 | None:intergenic | 45.0% | |
| CCTGGACCATTTGATCTTGT+GGG | + | chr3.1:92643933-92643952 | MS.gene68154:CDS | 45.0% | |
| CTTAGTCCCAACTTCAACCT+TGG | - | chr3.1:92644256-92644275 | None:intergenic | 45.0% | |
| CTTGTCGGTCTGAAAAACGA+TGG | + | chr3.1:92642402-92642421 | MS.gene68154:CDS | 45.0% | |
| GAAGACGATGATCGTATGGA+AGG | - | chr3.1:92642572-92642591 | None:intergenic | 45.0% | |
| GATGAAGCTGTGGAGAATAC+TGG | + | chr3.1:92642130-92642149 | MS.gene68154:CDS | 45.0% | |
| GATGCTCAAGACTTTGCTGA+TGG | + | chr3.1:92642193-92642212 | MS.gene68154:CDS | 45.0% | |
| GGCTGCACAGCAAAAGAAAA+TGG | - | chr3.1:92643915-92643934 | None:intergenic | 45.0% | |
| GGGTATGAGGATGATTCTCT+TGG | + | chr3.1:92643380-92643399 | MS.gene68154:intron | 45.0% | |
| GTGAATGACATCGGCATTGT+TGG | + | chr3.1:92642157-92642176 | MS.gene68154:CDS | 45.0% | |
| TATTCACCATCTATGGGCAC+AGG | + | chr3.1:92643293-92643312 | MS.gene68154:intron | 45.0% | |
| TTCGATGATGCCCAACCATT+TGG | + | chr3.1:92643473-92643492 | MS.gene68154:intron | 45.0% | |
| TTCTGTCAGCAAGTTCTTGC+AGG | + | chr3.1:92643804-92643823 | MS.gene68154:CDS | 45.0% | |
| ! | GACATTTGAAGCATCAGCTC+TGG | - | chr3.1:92643846-92643865 | None:intergenic | 45.0% |
| !! | AAGATTTTGGTGGAGAGAGG+AGG | + | chr3.1:92642884-92642903 | MS.gene68154:intron | 45.0% |
| !! | TGGAAGATTTTGGTGGAGAG+AGG | + | chr3.1:92642881-92642900 | MS.gene68154:intron | 45.0% |
| !! | TTTTCTTTTGCTGTGCAGCC+TGG | + | chr3.1:92643915-92643934 | MS.gene68154:intron | 45.0% |
| AGACTGGGTTTCAGAGCACA+AGG | + | chr3.1:92643117-92643136 | MS.gene68154:intron | 50.0% | |
| AGCCTGAACTGAAGATGGCA+CGG | - | chr3.1:92643767-92643786 | None:intergenic | 50.0% | |
| AGGGGAACTTTGAATGCAGC+AGG | + | chr3.1:92643248-92643267 | MS.gene68154:intron | 50.0% | |
| AGTGGTAAAGGGTGGTGAAG+AGG | + | chr3.1:92642371-92642390 | MS.gene68154:intron | 50.0% | |
| CCCACAAGATCAAATGGTCC+AGG | - | chr3.1:92643936-92643955 | None:intergenic | 50.0% | |
| GAAGAGGCAGAGCTACTTGT+CGG | + | chr3.1:92642387-92642406 | MS.gene68154:CDS | 50.0% | |
| GCCTGGACCATTTGATCTTG+TGG | + | chr3.1:92643932-92643951 | MS.gene68154:intron | 50.0% | |
| GGGGAACTTTGAATGCAGCA+GGG | + | chr3.1:92643249-92643268 | MS.gene68154:intron | 50.0% | |
| GTGTCAGTCAGATGAAGCTG+TGG | + | chr3.1:92642120-92642139 | MS.gene68154:CDS | 50.0% | |
| TGTCAATTCCTGGGGCAGAA+GGG | - | chr3.1:92642225-92642244 | None:intergenic | 50.0% | |
| ! | ACAGCGATGGTGTCAATTCC+TGG | - | chr3.1:92642235-92642254 | None:intergenic | 50.0% |
| ! | AGCGATGGTGTCAATTCCTG+GGG | - | chr3.1:92642233-92642252 | None:intergenic | 50.0% |
| ! | CAGCGATGGTGTCAATTCCT+GGG | - | chr3.1:92642234-92642253 | None:intergenic | 50.0% |
| AATTCCTGGGGCAGAAGGGA+AGG | - | chr3.1:92642221-92642240 | None:intergenic | 55.0% | |
| CTCCGTGCCATCTTCAGTTC+AGG | + | chr3.1:92643762-92643781 | MS.gene68154:CDS | 55.0% | |
| GTGTCAATTCCTGGGGCAGA+AGG | - | chr3.1:92642226-92642245 | None:intergenic | 55.0% | |
| GGGACCTTCCCTTCTGCCCC+AGG | + | chr3.1:92642214-92642233 | MS.gene68154:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 92642088 | 92644541 | 92642088 | ID=MS.gene68154 |
| chr3.1 | mRNA | 92642088 | 92644541 | 92642088 | ID=MS.gene68154.t1;Parent=MS.gene68154 |
| chr3.1 | exon | 92642088 | 92642277 | 92642088 | ID=MS.gene68154.t1.exon1;Parent=MS.gene68154.t1 |
| chr3.1 | CDS | 92642088 | 92642277 | 92642088 | ID=cds.MS.gene68154.t1;Parent=MS.gene68154.t1 |
| chr3.1 | exon | 92642373 | 92642423 | 92642373 | ID=MS.gene68154.t1.exon2;Parent=MS.gene68154.t1 |
| chr3.1 | CDS | 92642373 | 92642423 | 92642373 | ID=cds.MS.gene68154.t1;Parent=MS.gene68154.t1 |
| chr3.1 | exon | 92642526 | 92642614 | 92642526 | ID=MS.gene68154.t1.exon3;Parent=MS.gene68154.t1 |
| chr3.1 | CDS | 92642526 | 92642614 | 92642526 | ID=cds.MS.gene68154.t1;Parent=MS.gene68154.t1 |
| chr3.1 | exon | 92643748 | 92643825 | 92643748 | ID=MS.gene68154.t1.exon4;Parent=MS.gene68154.t1 |
| chr3.1 | CDS | 92643748 | 92643825 | 92643748 | ID=cds.MS.gene68154.t1;Parent=MS.gene68154.t1 |
| chr3.1 | exon | 92643933 | 92644136 | 92643933 | ID=MS.gene68154.t1.exon5;Parent=MS.gene68154.t1 |
| chr3.1 | CDS | 92643933 | 92644136 | 92643933 | ID=cds.MS.gene68154.t1;Parent=MS.gene68154.t1 |
| chr3.1 | exon | 92644237 | 92644308 | 92644237 | ID=MS.gene68154.t1.exon6;Parent=MS.gene68154.t1 |
| chr3.1 | CDS | 92644237 | 92644308 | 92644237 | ID=cds.MS.gene68154.t1;Parent=MS.gene68154.t1 |
| chr3.1 | exon | 92644494 | 92644541 | 92644494 | ID=MS.gene68154.t1.exon7;Parent=MS.gene68154.t1 |
| chr3.1 | CDS | 92644494 | 92644541 | 92644494 | ID=cds.MS.gene68154.t1;Parent=MS.gene68154.t1 |
| Gene Sequence |
| Protein sequence |
