Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68169.t1 | PNY08193.1 | 86 | 542 | 62 | 5 | 1 | 537 | 1 | 533 | 5.10E-255 | 890.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68169.t1 | Q9SI61 | 80.4 | 514 | 98 | 2 | 45 | 558 | 48 | 558 | 1.0e-235 | 817.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68169.t1 | A0A2K3NYV3 | 86.0 | 542 | 62 | 5 | 1 | 537 | 1 | 533 | 3.7e-255 | 890.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049488 | MS.gene68169 | 0.801191 | 1.01E-48 | -1.69E-46 |
| MS.gene050670 | MS.gene68169 | 0.815798 | 7.68E-52 | -1.69E-46 |
| MS.gene051582 | MS.gene68169 | 0.806149 | 9.47E-50 | -1.69E-46 |
| MS.gene052322 | MS.gene68169 | 0.817358 | 3.44E-52 | -1.69E-46 |
| MS.gene054107 | MS.gene68169 | 0.809545 | 1.79E-50 | -1.69E-46 |
| MS.gene05553 | MS.gene68169 | 0.807169 | 5.76E-50 | -1.69E-46 |
| MS.gene056337 | MS.gene68169 | 0.812073 | 5.09E-51 | -1.69E-46 |
| MS.gene056782 | MS.gene68169 | 0.821742 | 3.43E-53 | -1.69E-46 |
| MS.gene057124 | MS.gene68169 | 0.858925 | 5.90E-63 | -1.69E-46 |
| MS.gene05886 | MS.gene68169 | 0.828866 | 7.08E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68169.t1 | MTR_4g072110 | 78.369 | 564 | 98 | 7 | 1 | 558 | 1 | 546 | 0.0 | 870 |
| MS.gene68169.t1 | MTR_3g117590 | 87.010 | 408 | 22 | 2 | 139 | 546 | 27 | 403 | 0.0 | 703 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68169.t1 | AT2G16570 | 84.375 | 480 | 74 | 1 | 79 | 558 | 80 | 558 | 0.0 | 839 |
| MS.gene68169.t1 | AT4G34740 | 83.197 | 488 | 79 | 2 | 72 | 558 | 68 | 553 | 0.0 | 837 |
| MS.gene68169.t1 | AT4G38880 | 67.235 | 528 | 160 | 5 | 12 | 537 | 9 | 525 | 0.0 | 717 |
Find 113 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCCCAATTCTGTTGTATT+TGG | 0.096765 | 3.1:-92510900 | MS.gene68169:CDS |
| ATTATTGGGTCTTGTTATTA+TGG | 0.169325 | 3.1:-92510501 | MS.gene68169:CDS |
| GTTATAGCTGTTCCTGATTC+TGG | 0.192514 | 3.1:-92510804 | MS.gene68169:CDS |
| TCACAGAAGATTAGAGATTT+TGG | 0.203480 | 3.1:-92510684 | MS.gene68169:CDS |
| CAGAAAGAGATGAAGATTAT+TGG | 0.205620 | 3.1:-92510216 | MS.gene68169:CDS |
| ATTGCATGTCCACCAATTAT+TGG | 0.249163 | 3.1:-92510516 | MS.gene68169:CDS |
| GCTGAGATTAAGGAATTTAT+TGG | 0.256050 | 3.1:-92510429 | MS.gene68169:CDS |
| AAGATTGTTTGGTGAAATAT+TGG | 0.274673 | 3.1:-92510856 | MS.gene68169:CDS |
| TCAACAATTCTCGCTATAAA+AGG | 0.280350 | 3.1:+92511212 | None:intergenic |
| GTGAATGGGAATGTGTTGTT+AGG | 0.284914 | 3.1:+92511704 | None:intergenic |
| TAATAACAAGACCCAATAAT+TGG | 0.293975 | 3.1:+92510504 | None:intergenic |
| AATGAGTGTAGCTGAGATTA+AGG | 0.295289 | 3.1:-92510439 | MS.gene68169:CDS |
| TTTCCCAAATACAACAGAAT+TGG | 0.301159 | 3.1:+92510896 | None:intergenic |
| TAGCATAGACGTGAAGCTTC+TGG | 0.312710 | 3.1:+92511608 | None:intergenic |
| TCCAGGTAATTGACGAAGTT+TGG | 0.318477 | 3.1:+92511463 | None:intergenic |
| CCGGTTCGTGCTGTTCTTGA+AGG | 0.320056 | 3.1:-92510642 | MS.gene68169:CDS |
| TGCCCAATTCTGTTGTATTT+GGG | 0.324405 | 3.1:-92510899 | MS.gene68169:CDS |
| TTCTGTTATGCTTGTTTCAC+TGG | 0.324666 | 3.1:-92510339 | MS.gene68169:CDS |
| TAACGATACCAGCACCTTCT+TGG | 0.325690 | 3.1:+92511555 | None:intergenic |
| TGTGTTGTTAGGGTTGTTAT+TGG | 0.329634 | 3.1:+92511715 | None:intergenic |
| AGAAATGAACTTGAGGAATC+TGG | 0.335037 | 3.1:-92511302 | MS.gene68169:CDS |
| TTGCATGTCCACCAATTATT+GGG | 0.345820 | 3.1:-92510515 | MS.gene68169:CDS |
| AGAATGAGAAGGTGAGGTTT+TGG | 0.352465 | 3.1:+92511763 | None:intergenic |
| TGACCGATGGCTAAGGTTCC+AGG | 0.358511 | 3.1:+92511446 | None:intergenic |
| GTTGCTGTCAGAGATCCTTT+TGG | 0.373947 | 3.1:-92511131 | MS.gene68169:CDS |
| TTTGTTGCAGGTTACCGTTT+TGG | 0.378465 | 3.1:-92511374 | MS.gene68169:CDS |
| AAAGTCCTTCAAACTGTTAC+CGG | 0.388219 | 3.1:-92511518 | MS.gene68169:CDS |
| TTTAGGTTTGTTGAGGGAAG+AGG | 0.397497 | 3.1:+92511871 | None:intergenic |
| TTAAGTTCAGTAGGTTCAAC+AGG | 0.399551 | 3.1:+92510309 | None:intergenic |
| TTCCCAAATACAACAGAATT+GGG | 0.403442 | 3.1:+92510897 | None:intergenic |
| GTGCTGTTCTTGAAGGGAAA+AGG | 0.406661 | 3.1:-92510635 | MS.gene68169:CDS |
| TATGAATCAAGAAGATTGTT+TGG | 0.412509 | 3.1:-92510867 | MS.gene68169:CDS |
| CTAATCAAACCCTGTTGAAA+AGG | 0.417806 | 3.1:+92510741 | None:intergenic |
| TCTGGTGTTGTTGCTGCACT+TGG | 0.419203 | 3.1:-92510786 | MS.gene68169:CDS |
| TTCGTCGTCATCATCATTAG+TGG | 0.423475 | 3.1:+92511673 | None:intergenic |
| TGAATGGGAATGTGTTGTTA+GGG | 0.428275 | 3.1:+92511705 | None:intergenic |
| AGAGAGTTTAGGTTTGTTGA+GGG | 0.448031 | 3.1:+92511865 | None:intergenic |
| CAAGTTCATTTCTCAAGAAA+CGG | 0.451446 | 3.1:+92511312 | None:intergenic |
| GCAGCAACAACACCAGAATC+AGG | 0.452380 | 3.1:+92510792 | None:intergenic |
| CGTGAAGAATGTGGCATTGT+TGG | 0.452730 | 3.1:-92511644 | MS.gene68169:CDS |
| TCCGTTGGTGTTGCTCATAA+TGG | 0.454130 | 3.1:-92511350 | MS.gene68169:CDS |
| CTTAAAGTTAAGAAGAGGAT+TGG | 0.456503 | 3.1:-92510291 | MS.gene68169:CDS |
| ATAACTACATCACAATCAAC+AGG | 0.456568 | 3.1:+92510822 | None:intergenic |
| TCCTGGTGAAATTGTGGTTG+TGG | 0.462497 | 3.1:-92511003 | MS.gene68169:CDS |
| CTTCAAACTGTTACCGGTGT+TGG | 0.464798 | 3.1:-92511512 | MS.gene68169:CDS |
| TGCTGTTCTTGAAGGGAAAA+GGG | 0.475172 | 3.1:-92510634 | MS.gene68169:CDS |
| GGATAGTTTGAAGAAGTTGT+TGG | 0.482382 | 3.1:-92510379 | MS.gene68169:CDS |
| CTTGGTTATGCTGCAAAAGC+TGG | 0.485841 | 3.1:-92510768 | MS.gene68169:CDS |
| TGTGGCATTGTTGGTATCTA+CGG | 0.487304 | 3.1:-92511635 | MS.gene68169:CDS |
| GTTGAGGGAAGAGGAAGAGA+GGG | 0.493244 | 3.1:+92511880 | None:intergenic |
| CCTTCAAGAACAGCACGAAC+CGG | 0.494340 | 3.1:+92510642 | None:intergenic |
| AAGAGAGTTTAGGTTTGTTG+AGG | 0.497209 | 3.1:+92511864 | None:intergenic |
| GATAGTTTGAAGAAGTTGTT+GGG | 0.498781 | 3.1:-92510378 | MS.gene68169:CDS |
| TGTTGAGGGAAGAGGAAGAG+AGG | 0.501159 | 3.1:+92511879 | None:intergenic |
| GATATCAACTCTTCAGAGCT+AGG | 0.501424 | 3.1:+92510468 | None:intergenic |
| ACCAAACTTCGTCAATTACC+TGG | 0.502006 | 3.1:-92511464 | MS.gene68169:CDS |
| TTCTTAACTTTAAGTTCAGT+AGG | 0.508401 | 3.1:+92510300 | None:intergenic |
| AACAAGTGTTGGCGGTTGAA+TGG | 0.508842 | 3.1:+92511822 | None:intergenic |
| CGGTTCGTGCTGTTCTTGAA+GGG | 0.509292 | 3.1:-92510641 | MS.gene68169:CDS |
| TCTGTGGACGGTGGATTGAA+TGG | 0.513186 | 3.1:-92510261 | MS.gene68169:CDS |
| AAACGGTAACCTGCAACAAA+AGG | 0.514148 | 3.1:+92511377 | None:intergenic |
| TCTGTTATGCTTGTTTCACT+GGG | 0.514410 | 3.1:-92510338 | MS.gene68169:CDS |
| TATGAAAGAGAGGTTTATCC+TGG | 0.522853 | 3.1:-92511020 | MS.gene68169:CDS |
| CTTCAACACCGTGGCCAAGA+AGG | 0.526221 | 3.1:-92511569 | MS.gene68169:CDS |
| ACCAAAGGTCGAAAACCAAA+AGG | 0.526636 | 3.1:+92511116 | None:intergenic |
| TAGTGGCGATGTTTGTGAAT+GGG | 0.534660 | 3.1:+92511690 | None:intergenic |
| TTTGGTGTCGTTGAAAACTT+CGG | 0.543746 | 3.1:+92511481 | None:intergenic |
| TGGGTCTTGTTATTATGGTG+TGG | 0.544696 | 3.1:-92510496 | MS.gene68169:CDS |
| AAAGTTAAGAAGAGGATTGG+TGG | 0.549648 | 3.1:-92510288 | MS.gene68169:CDS |
| TCTTGAAGGGAAAAGGGTTG+TGG | 0.550569 | 3.1:-92510628 | MS.gene68169:CDS |
| GTGAGGTTGTTAAAAGAAGC+TGG | 0.552217 | 3.1:-92510561 | MS.gene68169:CDS |
| CTTCTTCTTCCCATAACCAA+AGG | 0.554261 | 3.1:+92511101 | None:intergenic |
| CTGAACTTAAAGTTAAGAAG+AGG | 0.556144 | 3.1:-92510296 | MS.gene68169:CDS |
| CAACACCAACGGAACCAAAA+CGG | 0.557562 | 3.1:+92511360 | None:intergenic |
| GTTGTAAGAATGAGAAGGTG+AGG | 0.561350 | 3.1:+92511757 | None:intergenic |
| CAACACCGGTAACAGTTTGA+AGG | 0.562556 | 3.1:+92511513 | None:intergenic |
| TCCACAACCACAATTTCACC+AGG | 0.563343 | 3.1:+92511002 | None:intergenic |
| GGTTTATCCTGGTGAAATTG+TGG | 0.564016 | 3.1:-92511009 | MS.gene68169:CDS |
| TTTCTTGAGAAATGAACTTG+AGG | 0.564667 | 3.1:-92511309 | MS.gene68169:CDS |
| CACCGTGGCCAAGAAGGTGC+TGG | 0.566006 | 3.1:-92511563 | MS.gene68169:CDS |
| TTCGGAAACGAGGCCAACAC+CGG | 0.567067 | 3.1:+92511499 | None:intergenic |
| AAATCTCTAATCTTCTGTGA+TGG | 0.569057 | 3.1:+92510687 | None:intergenic |
| TAACAAGACCCAATAATTGG+TGG | 0.569913 | 3.1:+92510507 | None:intergenic |
| TGTGAAGTTGAAGCTTTCAC+CGG | 0.573769 | 3.1:-92510661 | MS.gene68169:CDS |
| CGAAGCTACTTATGAAAGAG+AGG | 0.573913 | 3.1:-92511030 | MS.gene68169:CDS |
| ATTGGTGGTGATTCTGTGGA+CGG | 0.576969 | 3.1:-92510273 | MS.gene68169:CDS |
| TTAGTGGCGATGTTTGTGAA+TGG | 0.579736 | 3.1:+92511689 | None:intergenic |
| CGTTGAAAACTTCGGAAACG+AGG | 0.581432 | 3.1:+92511489 | None:intergenic |
| GTTGAAGAGCGTGGAGAGCG+AGG | 0.582022 | 3.1:+92511585 | None:intergenic |
| GAAAAGCCTCGTGAAGAATG+TGG | 0.582099 | 3.1:-92511653 | MS.gene68169:CDS |
| ATTGTCCTGCGGTTGAGTAA+CGG | 0.585495 | 3.1:+92511420 | None:intergenic |
| TACCAGCACCTTCTTGGCCA+CGG | 0.594795 | 3.1:+92511561 | None:intergenic |
| GGCGGTTGAATGGTTGAGAG+AGG | 0.597439 | 3.1:+92511832 | None:intergenic |
| GTTATGGGAAGAAGAAGTAA+CGG | 0.598346 | 3.1:-92511095 | MS.gene68169:CDS |
| TTGATTAGGTCACACTATGT+TGG | 0.599304 | 3.1:-92510726 | MS.gene68169:CDS |
| ACGGACATGACCGATGGCTA+AGG | 0.601051 | 3.1:+92511439 | None:intergenic |
| GTTGATGATTCAATTGTGAG+AGG | 0.610184 | 3.1:-92510603 | MS.gene68169:CDS |
| TTACCTGGAACCTTAGCCAT+CGG | 0.612138 | 3.1:-92511449 | MS.gene68169:CDS |
| CATGTCCGTTACTCAACCGC+AGG | 0.612516 | 3.1:-92511425 | MS.gene68169:CDS |
| GAGGATTGGTGGTGATTCTG+TGG | 0.622494 | 3.1:-92510277 | MS.gene68169:CDS |
| TTGTAGTTGTAAGAATGAGA+AGG | 0.631544 | 3.1:+92511752 | None:intergenic |
| ACCATTATGAGCAACACCAA+CGG | 0.634502 | 3.1:+92511349 | None:intergenic |
| CAACATCATCTAAAATTGTG+AGG | 0.642187 | 3.1:-92510578 | MS.gene68169:CDS |
| GGACGGTGGATTGAATGGAT+CGG | 0.653459 | 3.1:-92510256 | MS.gene68169:CDS |
| GGTGGTGATTCTGTGGACGG+TGG | 0.655121 | 3.1:-92510270 | MS.gene68169:CDS |
| TGAGTAACGGACATGACCGA+TGG | 0.661499 | 3.1:+92511433 | None:intergenic |
| AACTTCTTCAAACTATCCAT+AGG | 0.662605 | 3.1:+92510384 | None:intergenic |
| ATTGTGGTTGTGGATAAAAG+TGG | 0.668729 | 3.1:-92510993 | MS.gene68169:CDS |
| GGCCACGGTGTTGAAGAGCG+TGG | 0.680312 | 3.1:+92511576 | None:intergenic |
| GTGCTAAAGAAGTTCACATG+AGG | 0.680748 | 3.1:-92510539 | MS.gene68169:CDS |
| TTTGAGCATGGATTGTCCTG+CGG | 0.688776 | 3.1:+92511409 | None:intergenic |
| ACAATGCCACATTCTTCACG+AGG | 0.693568 | 3.1:+92511647 | None:intergenic |
| CTCCACGCTCTTCAACACCG+TGG | 0.743272 | 3.1:-92511578 | MS.gene68169:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTCAAAAATACATTGTTT+TGG | + | chr3.1:92511178-92511197 | None:intergenic | 20.0% |
| ! | TAATAACAAGACCCAATAAT+TGG | + | chr3.1:92511610-92511629 | None:intergenic | 25.0% |
| ! | TATGAATCAAGAAGATTGTT+TGG | - | chr3.1:92511244-92511263 | MS.gene68169:CDS | 25.0% |
| !! | AAGATTGTTTGGTGAAATAT+TGG | - | chr3.1:92511255-92511274 | MS.gene68169:CDS | 25.0% |
| !! | TTCTTAACTTTAAGTTCAGT+AGG | + | chr3.1:92511814-92511833 | None:intergenic | 25.0% |
| !!! | AAAATACATTGTTTTGGTTC+TGG | + | chr3.1:92511172-92511191 | None:intergenic | 25.0% |
| !!! | ATTATTGGGTCTTGTTATTA+TGG | - | chr3.1:92511610-92511629 | MS.gene68169:CDS | 25.0% |
| AAATCTCTAATCTTCTGTGA+TGG | + | chr3.1:92511427-92511446 | None:intergenic | 30.0% | |
| AACTTCTTCAAACTATCCAT+AGG | + | chr3.1:92511730-92511749 | None:intergenic | 30.0% | |
| ATAACTACATCACAATCAAC+AGG | + | chr3.1:92511292-92511311 | None:intergenic | 30.0% | |
| CAAGTTCATTTCTCAAGAAA+CGG | + | chr3.1:92510802-92510821 | None:intergenic | 30.0% | |
| CAGAAAGAGATGAAGATTAT+TGG | - | chr3.1:92511895-92511914 | MS.gene68169:CDS | 30.0% | |
| CTGAACTTAAAGTTAAGAAG+AGG | - | chr3.1:92511815-92511834 | MS.gene68169:CDS | 30.0% | |
| CTTAAAGTTAAGAAGAGGAT+TGG | - | chr3.1:92511820-92511839 | MS.gene68169:CDS | 30.0% | |
| GAAGAAGAAAAAGAGAGTTT+AGG | + | chr3.1:92510260-92510279 | None:intergenic | 30.0% | |
| GATAGTTTGAAGAAGTTGTT+GGG | - | chr3.1:92511733-92511752 | MS.gene68169:CDS | 30.0% | |
| GCTGAGATTAAGGAATTTAT+TGG | - | chr3.1:92511682-92511701 | MS.gene68169:CDS | 30.0% | |
| TCAACAATTCTCGCTATAAA+AGG | + | chr3.1:92510902-92510921 | None:intergenic | 30.0% | |
| TTCCCAAATACAACAGAATT+GGG | + | chr3.1:92511217-92511236 | None:intergenic | 30.0% | |
| TTGTAGTTGTAAGAATGAGA+AGG | + | chr3.1:92510362-92510381 | None:intergenic | 30.0% | |
| TTTCCCAAATACAACAGAAT+TGG | + | chr3.1:92511218-92511237 | None:intergenic | 30.0% | |
| TTTCTTGAGAAATGAACTTG+AGG | - | chr3.1:92510802-92510821 | MS.gene68169:CDS | 30.0% | |
| ! | CAACATCATCTAAAATTGTG+AGG | - | chr3.1:92511533-92511552 | MS.gene68169:CDS | 30.0% |
| ! | TCACAGAAGATTAGAGATTT+TGG | - | chr3.1:92511427-92511446 | MS.gene68169:CDS | 30.0% |
| AAAGTCCTTCAAACTGTTAC+CGG | - | chr3.1:92510593-92510612 | MS.gene68169:CDS | 35.0% | |
| AAAGTTAAGAAGAGGATTGG+TGG | - | chr3.1:92511823-92511842 | MS.gene68169:CDS | 35.0% | |
| AATGAGTGTAGCTGAGATTA+AGG | - | chr3.1:92511672-92511691 | MS.gene68169:CDS | 35.0% | |
| AGAAATGAACTTGAGGAATC+TGG | - | chr3.1:92510809-92510828 | MS.gene68169:CDS | 35.0% | |
| ATTGCATGTCCACCAATTAT+TGG | - | chr3.1:92511595-92511614 | MS.gene68169:CDS | 35.0% | |
| ATTGTGGTTGTGGATAAAAG+TGG | - | chr3.1:92511118-92511137 | MS.gene68169:CDS | 35.0% | |
| CTAATCAAACCCTGTTGAAA+AGG | + | chr3.1:92511373-92511392 | None:intergenic | 35.0% | |
| GAAGCGTGTGAAAAAGTTAA+AGG | - | chr3.1:92510920-92510939 | MS.gene68169:CDS | 35.0% | |
| GGATAGTTTGAAGAAGTTGT+TGG | - | chr3.1:92511732-92511751 | MS.gene68169:CDS | 35.0% | |
| GTTATGGGAAGAAGAAGTAA+CGG | - | chr3.1:92511016-92511035 | MS.gene68169:CDS | 35.0% | |
| GTTGTGGAAAAAACAAGTGT+TGG | + | chr3.1:92510303-92510322 | None:intergenic | 35.0% | |
| TAACAAGACCCAATAATTGG+TGG | + | chr3.1:92511607-92511626 | None:intergenic | 35.0% | |
| TATGAAAGAGAGGTTTATCC+TGG | - | chr3.1:92511091-92511110 | MS.gene68169:CDS | 35.0% | |
| TCTGTTATGCTTGTTTCACT+GGG | - | chr3.1:92511773-92511792 | MS.gene68169:CDS | 35.0% | |
| TGCCCAATTCTGTTGTATTT+GGG | - | chr3.1:92511212-92511231 | MS.gene68169:CDS | 35.0% | |
| TTAAGTTCAGTAGGTTCAAC+AGG | + | chr3.1:92511805-92511824 | None:intergenic | 35.0% | |
| TTCTGTTATGCTTGTTTCAC+TGG | - | chr3.1:92511772-92511791 | MS.gene68169:CDS | 35.0% | |
| TTGATTAGGTCACACTATGT+TGG | - | chr3.1:92511385-92511404 | MS.gene68169:CDS | 35.0% | |
| TTGCATGTCCACCAATTATT+GGG | - | chr3.1:92511596-92511615 | MS.gene68169:CDS | 35.0% | |
| TTGCCCAATTCTGTTGTATT+TGG | - | chr3.1:92511211-92511230 | MS.gene68169:CDS | 35.0% | |
| ! | CTTTTCAACAGGGTTTGATT+AGG | - | chr3.1:92511371-92511390 | MS.gene68169:CDS | 35.0% |
| ! | TGAATGGGAATGTGTTGTTA+GGG | + | chr3.1:92510409-92510428 | None:intergenic | 35.0% |
| ! | TGTGTTGTTAGGGTTGTTAT+TGG | + | chr3.1:92510399-92510418 | None:intergenic | 35.0% |
| !! | AAGAGAGTTTAGGTTTGTTG+AGG | + | chr3.1:92510250-92510269 | None:intergenic | 35.0% |
| !! | AGAGAGTTTAGGTTTGTTGA+GGG | + | chr3.1:92510249-92510268 | None:intergenic | 35.0% |
| !! | GTTGATGATTCAATTGTGAG+AGG | - | chr3.1:92511508-92511527 | MS.gene68169:CDS | 35.0% |
| !! | TTCACTTGCTTTTCTACCTA+TGG | - | chr3.1:92511711-92511730 | MS.gene68169:CDS | 35.0% |
| !! | TTTGGTGTCGTTGAAAACTT+CGG | + | chr3.1:92510633-92510652 | None:intergenic | 35.0% |
| !!! | TTGAGAGAAGAGTTTTGTTG+TGG | + | chr3.1:92510319-92510338 | None:intergenic | 35.0% |
| AAACGGTAACCTGCAACAAA+AGG | + | chr3.1:92510737-92510756 | None:intergenic | 40.0% | |
| ACCAAACTTCGTCAATTACC+TGG | - | chr3.1:92510647-92510666 | MS.gene68169:CDS | 40.0% | |
| ACCAAAGGTCGAAAACCAAA+AGG | + | chr3.1:92510998-92511017 | None:intergenic | 40.0% | |
| ACCATTATGAGCAACACCAA+CGG | + | chr3.1:92510765-92510784 | None:intergenic | 40.0% | |
| CGAAGCTACTTATGAAAGAG+AGG | - | chr3.1:92511081-92511100 | MS.gene68169:CDS | 40.0% | |
| CTTCTTCTTCCCATAACCAA+AGG | + | chr3.1:92511013-92511032 | None:intergenic | 40.0% | |
| GATATCAACTCTTCAGAGCT+AGG | + | chr3.1:92511646-92511665 | None:intergenic | 40.0% | |
| GGTTTATCCTGGTGAAATTG+TGG | - | chr3.1:92511102-92511121 | MS.gene68169:CDS | 40.0% | |
| GTGAGGTTGTTAAAAGAAGC+TGG | - | chr3.1:92511550-92511569 | MS.gene68169:CDS | 40.0% | |
| GTGCTAAAGAAGTTCACATG+AGG | - | chr3.1:92511572-92511591 | MS.gene68169:CDS | 40.0% | |
| GTTATAGCTGTTCCTGATTC+TGG | - | chr3.1:92511307-92511326 | MS.gene68169:CDS | 40.0% | |
| GTTGTAAGAATGAGAAGGTG+AGG | + | chr3.1:92510357-92510376 | None:intergenic | 40.0% | |
| TAGTGGCGATGTTTGTGAAT+GGG | + | chr3.1:92510424-92510443 | None:intergenic | 40.0% | |
| TCCAGGTAATTGACGAAGTT+TGG | + | chr3.1:92510651-92510670 | None:intergenic | 40.0% | |
| TGCTGTTCTTGAAGGGAAAA+GGG | - | chr3.1:92511477-92511496 | MS.gene68169:CDS | 40.0% | |
| TGTGAAGTTGAAGCTTTCAC+CGG | - | chr3.1:92511450-92511469 | MS.gene68169:CDS | 40.0% | |
| TGTGGCATTGTTGGTATCTA+CGG | - | chr3.1:92510476-92510495 | MS.gene68169:CDS | 40.0% | |
| TTAGTGGCGATGTTTGTGAA+TGG | + | chr3.1:92510425-92510444 | None:intergenic | 40.0% | |
| TTCGTCGTCATCATCATTAG+TGG | + | chr3.1:92510441-92510460 | None:intergenic | 40.0% | |
| ! | AATGAGAAGGTGAGGTTTTG+GGG | + | chr3.1:92510349-92510368 | None:intergenic | 40.0% |
| ! | AGAATGAGAAGGTGAGGTTT+TGG | + | chr3.1:92510351-92510370 | None:intergenic | 40.0% |
| ! | GAATGAGAAGGTGAGGTTTT+GGG | + | chr3.1:92510350-92510369 | None:intergenic | 40.0% |
| ! | GGTTTTCGACCTTTGGTTAT+GGG | - | chr3.1:92511001-92511020 | MS.gene68169:CDS | 40.0% |
| ! | GTGAATGGGAATGTGTTGTT+AGG | + | chr3.1:92510410-92510429 | None:intergenic | 40.0% |
| ! | TGGTTTTCGACCTTTGGTTA+TGG | - | chr3.1:92511000-92511019 | MS.gene68169:CDS | 40.0% |
| ! | TTTGTTGCAGGTTACCGTTT+TGG | - | chr3.1:92510737-92510756 | MS.gene68169:CDS | 40.0% |
| !! | GTGGAAAAAACAAGTGTTGG+CGG | + | chr3.1:92510300-92510319 | None:intergenic | 40.0% |
| !! | TGGGTCTTGTTATTATGGTG+TGG | - | chr3.1:92511615-92511634 | MS.gene68169:CDS | 40.0% |
| !! | TTTAGGTTTGTTGAGGGAAG+AGG | + | chr3.1:92510243-92510262 | None:intergenic | 40.0% |
| !!! | CGGTTCTGTTGTTTTTGCTT+CGG | - | chr3.1:92511036-92511055 | MS.gene68169:CDS | 40.0% |
| !!! | TCCTTTTGGTTTTCGACCTT+TGG | - | chr3.1:92510994-92511013 | MS.gene68169:CDS | 40.0% |
| ACAATGCCACATTCTTCACG+AGG | + | chr3.1:92510467-92510486 | None:intergenic | 45.0% | |
| ATTGTCCTGCGGTTGAGTAA+CGG | + | chr3.1:92510694-92510713 | None:intergenic | 45.0% | |
| CAACACCAACGGAACCAAAA+CGG | + | chr3.1:92510754-92510773 | None:intergenic | 45.0% | |
| CAACACCGGTAACAGTTTGA+AGG | + | chr3.1:92510601-92510620 | None:intergenic | 45.0% | |
| CGTGAAGAATGTGGCATTGT+TGG | - | chr3.1:92510467-92510486 | MS.gene68169:CDS | 45.0% | |
| CGTTGAAAACTTCGGAAACG+AGG | + | chr3.1:92510625-92510644 | None:intergenic | 45.0% | |
| CTTCAAACTGTTACCGGTGT+TGG | - | chr3.1:92510599-92510618 | MS.gene68169:CDS | 45.0% | |
| CTTGGTTATGCTGCAAAAGC+TGG | - | chr3.1:92511343-92511362 | MS.gene68169:CDS | 45.0% | |
| GAAAAGCCTCGTGAAGAATG+TGG | - | chr3.1:92510458-92510477 | MS.gene68169:CDS | 45.0% | |
| TAACGATACCAGCACCTTCT+TGG | + | chr3.1:92510559-92510578 | None:intergenic | 45.0% | |
| TAGCATAGACGTGAAGCTTC+TGG | + | chr3.1:92510506-92510525 | None:intergenic | 45.0% | |
| TCCACAACCACAATTTCACC+AGG | + | chr3.1:92511112-92511131 | None:intergenic | 45.0% | |
| TCCTGGTGAAATTGTGGTTG+TGG | - | chr3.1:92511108-92511127 | MS.gene68169:CDS | 45.0% | |
| TCTTGAAGGGAAAAGGGTTG+TGG | - | chr3.1:92511483-92511502 | MS.gene68169:CDS | 45.0% | |
| TTACCTGGAACCTTAGCCAT+CGG | - | chr3.1:92510662-92510681 | MS.gene68169:CDS | 45.0% | |
| ! | AACGTGCAACCTTTTGTTGC+AGG | - | chr3.1:92510725-92510744 | MS.gene68169:CDS | 45.0% |
| ! | AGCTGGTGTTCCTTTTCAAC+AGG | - | chr3.1:92511360-92511379 | MS.gene68169:CDS | 45.0% |
| ! | GCTGGTGTTCCTTTTCAACA+GGG | - | chr3.1:92511361-92511380 | MS.gene68169:CDS | 45.0% |
| ! | GTGCTGTTCTTGAAGGGAAA+AGG | - | chr3.1:92511476-92511495 | MS.gene68169:CDS | 45.0% |
| ! | GTTGCTGTCAGAGATCCTTT+TGG | - | chr3.1:92510980-92510999 | MS.gene68169:CDS | 45.0% |
| ! | TTTGAGCATGGATTGTCCTG+CGG | + | chr3.1:92510705-92510724 | None:intergenic | 45.0% |
| !! | AACAAGTGTTGGCGGTTGAA+TGG | + | chr3.1:92510292-92510311 | None:intergenic | 45.0% |
| !! | AGGTTGCACGTTTTTGAGCA+TGG | + | chr3.1:92510717-92510736 | None:intergenic | 45.0% |
| !! | ATTGGTGGTGATTCTGTGGA+CGG | - | chr3.1:92511838-92511857 | MS.gene68169:CDS | 45.0% |
| !! | TCCGTTGGTGTTGCTCATAA+TGG | - | chr3.1:92510761-92510780 | MS.gene68169:CDS | 45.0% |
| CCTTCAAGAACAGCACGAAC+CGG | + | chr3.1:92511472-92511491 | None:intergenic | 50.0% | |
| GCAGCAACAACACCAGAATC+AGG | + | chr3.1:92511322-92511341 | None:intergenic | 50.0% | |
| GTTGAGGGAAGAGGAAGAGA+GGG | + | chr3.1:92510234-92510253 | None:intergenic | 50.0% | |
| TGTTGAGGGAAGAGGAAGAG+AGG | + | chr3.1:92510235-92510254 | None:intergenic | 50.0% | |
| ! | CGGTTCGTGCTGTTCTTGAA+GGG | - | chr3.1:92511470-92511489 | MS.gene68169:CDS | 50.0% |
| !! | GAGGATTGGTGGTGATTCTG+TGG | - | chr3.1:92511834-92511853 | MS.gene68169:CDS | 50.0% |
| !! | GGACGGTGGATTGAATGGAT+CGG | - | chr3.1:92511855-92511874 | MS.gene68169:CDS | 50.0% |
| !! | TCTGGTGTTGTTGCTGCACT+TGG | - | chr3.1:92511325-92511344 | MS.gene68169:CDS | 50.0% |
| !! | TCTGTGGACGGTGGATTGAA+TGG | - | chr3.1:92511850-92511869 | MS.gene68169:CDS | 50.0% |
| !! | TGAGTAACGGACATGACCGA+TGG | + | chr3.1:92510681-92510700 | None:intergenic | 50.0% |
| !!! | GGTTACCGTTTTGGTTCCGT+TGG | - | chr3.1:92510746-92510765 | MS.gene68169:CDS | 50.0% |
| ACGGACATGACCGATGGCTA+AGG | + | chr3.1:92510675-92510694 | None:intergenic | 55.0% | |
| CATGTCCGTTACTCAACCGC+AGG | - | chr3.1:92510686-92510705 | MS.gene68169:CDS | 55.0% | |
| CTTCAACACCGTGGCCAAGA+AGG | - | chr3.1:92510542-92510561 | MS.gene68169:CDS | 55.0% | |
| GGCGGTTGAATGGTTGAGAG+AGG | + | chr3.1:92510282-92510301 | None:intergenic | 55.0% | |
| TACCAGCACCTTCTTGGCCA+CGG | + | chr3.1:92510553-92510572 | None:intergenic | 55.0% | |
| TGACCGATGGCTAAGGTTCC+AGG | + | chr3.1:92510668-92510687 | None:intergenic | 55.0% | |
| TTCGGAAACGAGGCCAACAC+CGG | + | chr3.1:92510615-92510634 | None:intergenic | 55.0% | |
| ! | CCGGTTCGTGCTGTTCTTGA+AGG | - | chr3.1:92511469-92511488 | MS.gene68169:CDS | 55.0% |
| CTCCACGCTCTTCAACACCG+TGG | - | chr3.1:92510533-92510552 | MS.gene68169:CDS | 60.0% | |
| GGTGGTGATTCTGTGGACGG+TGG | - | chr3.1:92511841-92511860 | MS.gene68169:CDS | 60.0% | |
| ! | GTTGAAGAGCGTGGAGAGCG+AGG | + | chr3.1:92510529-92510548 | None:intergenic | 60.0% |
| ! | CACCGTGGCCAAGAAGGTGC+TGG | - | chr3.1:92510548-92510567 | MS.gene68169:CDS | 65.0% |
| ! | GGCCACGGTGTTGAAGAGCG+TGG | + | chr3.1:92510538-92510557 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 92510209 | 92511924 | 92510209 | ID=MS.gene68169 |
| chr3.1 | mRNA | 92510209 | 92511924 | 92510209 | ID=MS.gene68169.t1;Parent=MS.gene68169 |
| chr3.1 | exon | 92510209 | 92511924 | 92510209 | ID=MS.gene68169.t1.exon1;Parent=MS.gene68169.t1 |
| chr3.1 | CDS | 92510209 | 92511924 | 92510209 | ID=cds.MS.gene68169.t1;Parent=MS.gene68169.t1 |
| Gene Sequence |
| Protein sequence |
