Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056337.t1 | XP_013456230.1 | 97.1 | 588 | 17 | 0 | 1 | 588 | 1 | 588 | 0.00E+00 | 1130.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056337.t1 | Q9LXU9 | 52.7 | 586 | 217 | 14 | 24 | 586 | 12 | 560 | 2.1e-151 | 537.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056337.t1 | A0A072ULJ6 | 97.1 | 588 | 17 | 0 | 1 | 588 | 1 | 588 | 0.0e+00 | 1130.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050670 | MS.gene056337 | 0.823242 | 1.54E-53 | -1.69E-46 |
| MS.gene051208 | MS.gene056337 | 0.807081 | 6.02E-50 | -1.69E-46 |
| MS.gene051525 | MS.gene056337 | 0.8106 | 1.06E-50 | -1.69E-46 |
| MS.gene051582 | MS.gene056337 | 0.825465 | 4.62E-54 | -1.69E-46 |
| MS.gene052011 | MS.gene056337 | -0.827961 | 1.17E-54 | -1.69E-46 |
| MS.gene052253 | MS.gene056337 | 0.800997 | 1.11E-48 | -1.69E-46 |
| MS.gene053873 | MS.gene056337 | 0.806961 | 6.38E-50 | -1.69E-46 |
| MS.gene054918 | MS.gene056337 | 0.813824 | 2.11E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene056337 | 0.806094 | 9.72E-50 | -1.69E-46 |
| MS.gene055370 | MS.gene056337 | 0.819052 | 1.42E-52 | -1.69E-46 |
| MS.gene05594 | MS.gene056337 | 0.812706 | 3.70E-51 | -1.69E-46 |
| MS.gene056337 | MS.gene057476 | 0.81868 | 1.73E-52 | -1.69E-46 |
| MS.gene056337 | MS.gene057749 | 0.821908 | 3.14E-53 | -1.69E-46 |
| MS.gene056337 | MS.gene057825 | 0.806903 | 6.56E-50 | -1.69E-46 |
| MS.gene056337 | MS.gene057888 | 0.809292 | 2.03E-50 | -1.69E-46 |
| MS.gene056337 | MS.gene05886 | 0.829268 | 5.66E-55 | -1.69E-46 |
| MS.gene056337 | MS.gene059420 | 0.802022 | 6.83E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene060038 | 0.80668 | 7.31E-50 | -1.69E-46 |
| MS.gene056337 | MS.gene060403 | 0.81863 | 1.77E-52 | -1.69E-46 |
| MS.gene056337 | MS.gene062524 | 0.834549 | 2.81E-56 | -1.69E-46 |
| MS.gene056337 | MS.gene064237 | 0.82368 | 1.22E-53 | -1.69E-46 |
| MS.gene056337 | MS.gene067385 | 0.804121 | 2.51E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene068612 | 0.863842 | 1.87E-64 | -1.69E-46 |
| MS.gene056337 | MS.gene069145 | 0.858128 | 1.02E-62 | -1.69E-46 |
| MS.gene056337 | MS.gene069346 | 0.811964 | 5.38E-51 | -1.69E-46 |
| MS.gene056337 | MS.gene069859 | 0.815627 | 8.39E-52 | -1.69E-46 |
| MS.gene056337 | MS.gene07016 | 0.806458 | 8.15E-50 | -1.69E-46 |
| MS.gene056337 | MS.gene070515 | 0.828165 | 1.05E-54 | -1.69E-46 |
| MS.gene056337 | MS.gene070789 | 0.813436 | 2.56E-51 | -1.69E-46 |
| MS.gene056337 | MS.gene070879 | 0.818073 | 2.37E-52 | -1.69E-46 |
| MS.gene056337 | MS.gene070915 | 0.802442 | 5.60E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene073723 | 0.809399 | 1.93E-50 | -1.69E-46 |
| MS.gene056337 | MS.gene07862 | 0.809235 | 2.09E-50 | -1.69E-46 |
| MS.gene056337 | MS.gene07939 | 0.82371 | 1.20E-53 | -1.69E-46 |
| MS.gene056337 | MS.gene08264 | 0.817537 | 3.13E-52 | -1.69E-46 |
| MS.gene056337 | MS.gene20025 | 0.832907 | 7.23E-56 | -1.69E-46 |
| MS.gene056337 | MS.gene20364 | 0.801805 | 7.57E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene20482 | 0.842752 | 2.13E-58 | -1.69E-46 |
| MS.gene056337 | MS.gene22295 | 0.807937 | 3.96E-50 | -1.69E-46 |
| MS.gene056337 | MS.gene22296 | 0.822384 | 2.44E-53 | -1.69E-46 |
| MS.gene056337 | MS.gene22721 | 0.816448 | 5.50E-52 | -1.69E-46 |
| MS.gene056337 | MS.gene22943 | 0.805111 | 1.56E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene24098 | 0.836982 | 6.80E-57 | -1.69E-46 |
| MS.gene056337 | MS.gene25568 | 0.803098 | 4.10E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene25573 | 0.820116 | 8.13E-53 | -1.69E-46 |
| MS.gene056337 | MS.gene27093 | 0.823876 | 1.09E-53 | -1.69E-46 |
| MS.gene056337 | MS.gene27100 | 0.816954 | 4.24E-52 | -1.69E-46 |
| MS.gene056337 | MS.gene28113 | 0.817528 | 3.15E-52 | -1.69E-46 |
| MS.gene056337 | MS.gene28311 | 0.801999 | 6.91E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene28314 | 0.822837 | 1.91E-53 | -1.69E-46 |
| MS.gene056337 | MS.gene29775 | 0.801779 | 7.67E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene30306 | 0.808643 | 2.80E-50 | -1.69E-46 |
| MS.gene056337 | MS.gene31794 | 0.803385 | 3.58E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene34874 | 0.817591 | 3.05E-52 | -1.69E-46 |
| MS.gene056337 | MS.gene35690 | -0.800514 | 1.39E-48 | -1.69E-46 |
| MS.gene056337 | MS.gene36864 | 0.806182 | 9.32E-50 | -1.69E-46 |
| MS.gene056337 | MS.gene37233 | 0.829188 | 5.92E-55 | -1.69E-46 |
| MS.gene056337 | MS.gene39429 | 0.802415 | 5.67E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene41565 | 0.802286 | 6.03E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene42798 | 0.874309 | 7.47E-68 | -1.69E-46 |
| MS.gene056337 | MS.gene43149 | 0.803266 | 3.78E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene43812 | 0.823154 | 1.61E-53 | -1.69E-46 |
| MS.gene056337 | MS.gene44521 | 0.833506 | 5.13E-56 | -1.69E-46 |
| MS.gene056337 | MS.gene44672 | 0.801255 | 9.81E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene44674 | 0.808942 | 2.42E-50 | -1.69E-46 |
| MS.gene056337 | MS.gene44677 | 0.82658 | 2.51E-54 | -1.69E-46 |
| MS.gene056337 | MS.gene46239 | 0.802703 | 4.95E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene47869 | 0.819315 | 1.24E-52 | -1.69E-46 |
| MS.gene056337 | MS.gene48559 | 0.802585 | 5.23E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene51070 | 0.801146 | 1.03E-48 | -1.69E-46 |
| MS.gene056337 | MS.gene51389 | 0.812802 | 3.53E-51 | -1.69E-46 |
| MS.gene056337 | MS.gene51540 | 0.839867 | 1.23E-57 | -1.69E-46 |
| MS.gene056337 | MS.gene53332 | 0.821582 | 3.74E-53 | -1.69E-46 |
| MS.gene056337 | MS.gene53843 | 0.836953 | 6.91E-57 | -1.69E-46 |
| MS.gene056337 | MS.gene53845 | 0.802381 | 5.76E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene54606 | 0.895093 | 1.33E-75 | -1.69E-46 |
| MS.gene056337 | MS.gene55153 | 0.816531 | 5.27E-52 | -1.69E-46 |
| MS.gene056337 | MS.gene55213 | 0.811119 | 8.21E-51 | -1.69E-46 |
| MS.gene056337 | MS.gene55270 | 0.846308 | 2.36E-59 | -1.69E-46 |
| MS.gene056337 | MS.gene56071 | 0.810106 | 1.36E-50 | -1.69E-46 |
| MS.gene056337 | MS.gene56177 | 0.802162 | 6.39E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene58252 | 0.829429 | 5.17E-55 | -1.69E-46 |
| MS.gene056337 | MS.gene59384 | -0.812844 | 3.45E-51 | -1.69E-46 |
| MS.gene056337 | MS.gene59701 | 0.846735 | 1.80E-59 | -1.69E-46 |
| MS.gene056337 | MS.gene60395 | 0.823644 | 1.24E-53 | -1.69E-46 |
| MS.gene056337 | MS.gene60918 | 0.80987 | 1.53E-50 | -1.69E-46 |
| MS.gene056337 | MS.gene61579 | 0.834939 | 2.24E-56 | -1.69E-46 |
| MS.gene056337 | MS.gene62813 | 0.800087 | 1.70E-48 | -1.69E-46 |
| MS.gene056337 | MS.gene62822 | 0.813721 | 2.22E-51 | -1.69E-46 |
| MS.gene056337 | MS.gene62885 | -0.802174 | 6.36E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene62886 | -0.801727 | 7.86E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene64048 | 0.812774 | 3.58E-51 | -1.69E-46 |
| MS.gene056337 | MS.gene65641 | 0.838164 | 3.38E-57 | -1.69E-46 |
| MS.gene056337 | MS.gene66157 | 0.835991 | 1.22E-56 | -1.69E-46 |
| MS.gene056337 | MS.gene66702 | 0.806634 | 7.48E-50 | -1.69E-46 |
| MS.gene056337 | MS.gene67616 | 0.822632 | 2.14E-53 | -1.69E-46 |
| MS.gene056337 | MS.gene68169 | 0.812073 | 5.09E-51 | -1.69E-46 |
| MS.gene056337 | MS.gene68765 | 0.824032 | 1.01E-53 | -1.69E-46 |
| MS.gene056337 | MS.gene70897 | 0.805526 | 1.28E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene71006 | 0.828403 | 9.17E-55 | -1.69E-46 |
| MS.gene056337 | MS.gene71124 | 0.815551 | 8.72E-52 | -1.69E-46 |
| MS.gene056337 | MS.gene71558 | 0.842682 | 2.23E-58 | -1.69E-46 |
| MS.gene056337 | MS.gene71927 | -0.802645 | 5.09E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene72924 | -0.800502 | 1.40E-48 | -1.69E-46 |
| MS.gene056337 | MS.gene73211 | 0.800089 | 1.70E-48 | -1.69E-46 |
| MS.gene056337 | MS.gene74803 | 0.814502 | 1.49E-51 | -1.69E-46 |
| MS.gene056337 | MS.gene75176 | 0.816503 | 5.35E-52 | -1.69E-46 |
| MS.gene056337 | MS.gene75325 | 0.827001 | 1.99E-54 | -1.69E-46 |
| MS.gene056337 | MS.gene75346 | 0.816694 | 4.85E-52 | -1.69E-46 |
| MS.gene056337 | MS.gene76634 | 0.802155 | 6.42E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene77433 | 0.819021 | 1.44E-52 | -1.69E-46 |
| MS.gene056337 | MS.gene77435 | 0.812376 | 4.37E-51 | -1.69E-46 |
| MS.gene056337 | MS.gene77437 | 0.815201 | 1.04E-51 | -1.69E-46 |
| MS.gene056337 | MS.gene77660 | 0.808449 | 3.08E-50 | -1.69E-46 |
| MS.gene056337 | MS.gene77877 | 0.815152 | 1.07E-51 | -1.69E-46 |
| MS.gene056337 | MS.gene79179 | 0.807671 | 4.51E-50 | -1.69E-46 |
| MS.gene056337 | MS.gene81581 | 0.808756 | 2.65E-50 | -1.69E-46 |
| MS.gene056337 | MS.gene83244 | 0.823838 | 1.12E-53 | -1.69E-46 |
| MS.gene056337 | MS.gene83447 | 0.806181 | 9.32E-50 | -1.69E-46 |
| MS.gene056337 | MS.gene84344 | 0.829204 | 5.87E-55 | -1.69E-46 |
| MS.gene056337 | MS.gene85276 | -0.821342 | 4.25E-53 | -1.69E-46 |
| MS.gene056337 | MS.gene85703 | 0.813128 | 2.99E-51 | -1.69E-46 |
| MS.gene056337 | MS.gene86331 | 0.818907 | 1.53E-52 | -1.69E-46 |
| MS.gene056337 | MS.gene87268 | 0.825672 | 4.13E-54 | -1.69E-46 |
| MS.gene056337 | MS.gene88173 | 0.806064 | 9.86E-50 | -1.69E-46 |
| MS.gene056337 | MS.gene88978 | 0.804186 | 2.44E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene91657 | 0.802698 | 4.96E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene91795 | 0.813107 | 3.03E-51 | -1.69E-46 |
| MS.gene056337 | MS.gene92528 | 0.801091 | 1.06E-48 | -1.69E-46 |
| MS.gene056337 | MS.gene92668 | 0.800692 | 1.28E-48 | -1.69E-46 |
| MS.gene056337 | MS.gene95707 | 0.850979 | 1.20E-60 | -1.69E-46 |
| MS.gene056337 | MS.gene96111 | 0.800847 | 1.19E-48 | -1.69E-46 |
| MS.gene056337 | MS.gene97211 | 0.818128 | 2.30E-52 | -1.69E-46 |
| MS.gene056337 | MS.gene97871 | 0.815739 | 7.92E-52 | -1.69E-46 |
| MS.gene056337 | MS.gene98470 | -0.805338 | 1.40E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene98800 | 0.807274 | 5.48E-50 | -1.69E-46 |
| MS.gene056337 | MS.gene98808 | 0.815066 | 1.12E-51 | -1.69E-46 |
| MS.gene056337 | MS.gene98809 | 0.815987 | 6.98E-52 | -1.69E-46 |
| MS.gene056337 | MS.gene99535 | 0.805499 | 1.30E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene99819 | 0.815606 | 8.48E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056337.t1 | MTR_4g066010 | 97.109 | 588 | 17 | 0 | 1 | 588 | 1 | 588 | 0.0 | 1191 |
| MS.gene056337.t1 | MTR_2g098420 | 68.657 | 603 | 140 | 18 | 1 | 577 | 1 | 580 | 0.0 | 766 |
| MS.gene056337.t1 | MTR_8g106210 | 38.889 | 324 | 176 | 4 | 265 | 584 | 150 | 455 | 2.42e-71 | 237 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056337.t1 | AT5G12900 | 52.730 | 586 | 217 | 14 | 24 | 586 | 12 | 560 | 0.0 | 564 |
| MS.gene056337.t1 | AT1G12330 | 34.685 | 444 | 246 | 11 | 150 | 583 | 63 | 472 | 7.84e-70 | 234 |
Find 128 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGACGGTCTATGAATTT+TGG | 0.116469 | 4.1:+34846982 | None:intergenic |
| GTATTACCACTACTCTAAAT+TGG | 0.202218 | 4.1:-34846834 | MS.gene056337:CDS |
| TTTCTTCAATGTTGTTTATA+AGG | 0.223578 | 4.1:+34847166 | None:intergenic |
| TCTCGTCATTCGTTGCTCTT+AGG | 0.269047 | 4.1:-34846942 | MS.gene056337:CDS |
| AAACTGGTGTACAAGATTAT+AGG | 0.305192 | 4.1:-34847977 | MS.gene056337:CDS |
| CAGAACTGCCTTTGAGTACT+TGG | 0.306166 | 4.1:+34847080 | None:intergenic |
| ATGTTAAAGATAGGGTATTA+AGG | 0.310637 | 4.1:-34846600 | MS.gene056337:CDS |
| CTTACTCCTGTAGCTTTCAT+TGG | 0.318767 | 4.1:+34847815 | None:intergenic |
| AACTACAAGACAGGAAATTA+AGG | 0.323447 | 4.1:-34849054 | MS.gene056337:CDS |
| TGCAATTATAACTAGTGAAT+TGG | 0.324077 | 4.1:-34847736 | MS.gene056337:CDS |
| GATTTATGAAAGCTTCAAAA+TGG | 0.324347 | 4.1:+34847055 | None:intergenic |
| ACAAGAGCCGGTTACGGATT+TGG | 0.324635 | 4.1:+34847872 | None:intergenic |
| GTTTAATCTGTTCACAAAGT+TGG | 0.328307 | 4.1:+34847328 | None:intergenic |
| TTCTGAGATGCGATGTTCAT+TGG | 0.343847 | 4.1:-34847445 | MS.gene056337:CDS |
| TTTAATCTGTTCACAAAGTT+GGG | 0.345847 | 4.1:+34847329 | None:intergenic |
| AATTCACTAGTTATAATTGC+AGG | 0.346045 | 4.1:+34847738 | None:intergenic |
| TGAGAAACAGAGCGTGAAAC+AGG | 0.350674 | 4.1:+34848939 | None:intergenic |
| CCCAACTTTCAGATATTGTT+AGG | 0.351274 | 4.1:+34848027 | None:intergenic |
| AGTTGGGATGAAGGAGAATC+AGG | 0.354966 | 4.1:-34848011 | MS.gene056337:CDS |
| TGCAGGGTTACATTTATTGC+AGG | 0.358818 | 4.1:+34847755 | None:intergenic |
| CAGAACATATGTGAGATTCT+AGG | 0.359220 | 4.1:+34847904 | None:intergenic |
| TAAGAGAAGAAACAGTTTAG+AGG | 0.360943 | 4.1:-34847796 | MS.gene056337:CDS |
| TTAGGCATTTCGTGTGGTTC+TGG | 0.364717 | 4.1:+34848045 | None:intergenic |
| AGCTCTTAGTTCCACAGCTT+TGG | 0.364810 | 4.1:+34849022 | None:intergenic |
| AACCTTTGATCATCGCTATA+TGG | 0.369774 | 4.1:-34846686 | MS.gene056337:CDS |
| ACCATGATCTTAACTTTGCT+TGG | 0.370606 | 4.1:+34846637 | None:intergenic |
| ATTCTCACAGGTGTGAAAAC+AGG | 0.383820 | 4.1:+34848897 | None:intergenic |
| GCCTAACAATATCTGAAAGT+TGG | 0.386328 | 4.1:-34848028 | MS.gene056337:CDS |
| GAATTTAGAGACAGTTTATA+CGG | 0.392230 | 4.1:+34847102 | None:intergenic |
| TGATTTCGTGGTTGTTTCCT+CGG | 0.394790 | 4.1:-34847623 | MS.gene056337:CDS |
| CTCTAAATTGGATCAGGCCT+TGG | 0.408199 | 4.1:-34846822 | MS.gene056337:CDS |
| CGTGGCAGGAACAACAATAT+TGG | 0.408732 | 4.1:+34847689 | None:intergenic |
| CCTAACAATATCTGAAAGTT+GGG | 0.413549 | 4.1:-34848027 | MS.gene056337:CDS |
| AACTGGTGTACAAGATTATA+GGG | 0.415849 | 4.1:-34847976 | MS.gene056337:CDS |
| TTCCTAGTTTATTTAGGCTG+TGG | 0.418321 | 4.1:+34846552 | None:intergenic |
| ATAAACCAAGTTCAAGAAAA+GGG | 0.423850 | 4.1:-34847953 | MS.gene056337:CDS |
| TCCTCAGATTCTGCTCTACT+TGG | 0.425291 | 4.1:+34847570 | None:intergenic |
| GTTAAGATCATGGTTAATCC+AGG | 0.427966 | 4.1:-34846628 | MS.gene056337:CDS |
| TAAGGTGTAAGGTCCTTTGC+AGG | 0.436843 | 4.1:-34846582 | MS.gene056337:CDS |
| AAAGCTTGAAGGAGCTGCTC+AGG | 0.437990 | 4.1:+34846799 | None:intergenic |
| TCTGAGATGCGATGTTCATT+GGG | 0.440475 | 4.1:-34847444 | MS.gene056337:CDS |
| GATAAACCAAGTTCAAGAAA+AGG | 0.442732 | 4.1:-34847954 | MS.gene056337:CDS |
| GATGACACCAAATCCGTAAC+CGG | 0.450685 | 4.1:-34847879 | MS.gene056337:CDS |
| CTGGAATGAGGTACTGAGAA+AGG | 0.452317 | 4.1:-34846911 | MS.gene056337:CDS |
| GAGACAGAAGATGGAGTACT+TGG | 0.456731 | 4.1:-34847415 | MS.gene056337:CDS |
| CAGCTACAAAGAAAGCTTGA+AGG | 0.457579 | 4.1:+34846788 | None:intergenic |
| TCAGGAAACAGCATAGAAAC+TGG | 0.457604 | 4.1:-34847993 | MS.gene056337:CDS |
| AGAATCTGAGGATGTTTCTC+AGG | 0.458365 | 4.1:-34847559 | MS.gene056337:CDS |
| GAATAGAGACGTGGCGTTGG+TGG | 0.463871 | 4.1:-34847472 | MS.gene056337:CDS |
| CAGAGAGGGAAACCAATTGA+TGG | 0.465923 | 4.1:-34847291 | MS.gene056337:CDS |
| CTCCTGTAGCTTTCATTGGT+AGG | 0.467705 | 4.1:+34847819 | None:intergenic |
| CAATGGTGGGTTGAAAGAAA+AGG | 0.480886 | 4.1:+34846735 | None:intergenic |
| TTGCTCTTAGGAACTTGAGC+TGG | 0.483111 | 4.1:-34846930 | MS.gene056337:CDS |
| GAATGAGGAAGTAATGATAG+AGG | 0.484289 | 4.1:-34847244 | MS.gene056337:CDS |
| ATCCCTTGCCTGCGTCTGCA+TGG | 0.485992 | 4.1:+34847353 | None:intergenic |
| ATCATTACTTCCTCATTCAC+AGG | 0.490591 | 4.1:+34847249 | None:intergenic |
| CCACTACTCTAAATTGGATC+AGG | 0.492248 | 4.1:-34846828 | MS.gene056337:CDS |
| TAGTTCCACAGCTTTGGCTA+TGG | 0.496028 | 4.1:+34849028 | None:intergenic |
| ATATCTGAAAGTTGGGATGA+AGG | 0.496923 | 4.1:-34848020 | MS.gene056337:CDS |
| TGAAGGAGCTGCTCAGGCCA+AGG | 0.500301 | 4.1:+34846805 | None:intergenic |
| TCGCTTGGCGGTCTTCATGA+CGG | 0.500477 | 4.1:+34846968 | None:intergenic |
| AGATAGGGTATTAAGGTGTA+AGG | 0.504352 | 4.1:-34846593 | MS.gene056337:CDS |
| ATTTGCACAAGAGCCGGTTA+CGG | 0.506731 | 4.1:+34847866 | None:intergenic |
| CAATATTGTTGTTCCTGCCA+CGG | 0.511774 | 4.1:-34847688 | MS.gene056337:CDS |
| AAATACAATTCTCAAAGTCT+TGG | 0.513794 | 4.1:+34847022 | None:intergenic |
| AGTCTGAAACGAAAAGCAAA+GGG | 0.516834 | 4.1:-34847647 | MS.gene056337:CDS |
| TCTCAGGTTCTCAAGGACAT+AGG | 0.520348 | 4.1:-34847543 | MS.gene056337:CDS |
| TATATGATTTGCACAAGAGC+CGG | 0.520360 | 4.1:+34847860 | None:intergenic |
| GGGAGAGTTGAGACAGAAGA+TGG | 0.523009 | 4.1:-34847424 | MS.gene056337:CDS |
| AAAGCAAAGGGGTGATTTCG+TGG | 0.524133 | 4.1:-34847635 | MS.gene056337:CDS |
| ATGACGAGAATTTCGCTTGG+CGG | 0.524799 | 4.1:+34846956 | None:intergenic |
| GACGAGTGGGAATCCGTGGC+AGG | 0.527984 | 4.1:+34847675 | None:intergenic |
| CCCTTAAAACTCCCAATGGT+GGG | 0.532372 | 4.1:+34846722 | None:intergenic |
| ATATGGAAGATATGAGTCCT+AGG | 0.535709 | 4.1:-34846669 | MS.gene056337:CDS |
| CACCTACCAATGAAAGCTAC+AGG | 0.535955 | 4.1:-34847821 | MS.gene056337:CDS |
| AGATATGAGTCCTAGGTCAC+GGG | 0.536175 | 4.1:-34846662 | MS.gene056337:CDS |
| ACCCTTAAAACTCCCAATGG+TGG | 0.537328 | 4.1:+34846721 | None:intergenic |
| ATTCACTAGTTATAATTGCA+GGG | 0.541370 | 4.1:+34847739 | None:intergenic |
| TTGCTTGGACCCCGTGACCT+AGG | 0.546386 | 4.1:+34846652 | None:intergenic |
| TTATGCTTCTTCTTTAACCG+AGG | 0.546831 | 4.1:+34847606 | None:intergenic |
| AGGAGATAGAAACTTTGCAT+TGG | 0.549596 | 4.1:+34848965 | None:intergenic |
| GGATGTTTCTCAGGTTCTCA+AGG | 0.550773 | 4.1:-34847550 | MS.gene056337:CDS |
| TCTAAATTCCAAGTACTCAA+AGG | 0.555958 | 4.1:-34847088 | MS.gene056337:CDS |
| TCCAAGCAAAGTTAAGATCA+TGG | 0.559588 | 4.1:-34846638 | MS.gene056337:CDS |
| CATAGGAATAATGTCAATTG+AGG | 0.564077 | 4.1:-34847526 | MS.gene056337:CDS |
| AATCCATGCAGACGCAGGCA+AGG | 0.566446 | 4.1:-34847356 | MS.gene056337:CDS |
| TTCTCACAGGTGTGAAAACA+GGG | 0.567671 | 4.1:+34848898 | None:intergenic |
| AAATTCAATGCCTGTGAATG+AGG | 0.569144 | 4.1:-34847259 | MS.gene056337:CDS |
| CAGTCTGAAACGAAAAGCAA+AGG | 0.571815 | 4.1:-34847648 | MS.gene056337:CDS |
| TGGAATGAGGTACTGAGAAA+GGG | 0.572883 | 4.1:-34846910 | MS.gene056337:CDS |
| AAACTCAGAAACTACAAGAC+AGG | 0.574127 | 4.1:-34849063 | MS.gene056337:CDS |
| TTAAGATCATGGTTAATCCA+GGG | 0.574929 | 4.1:-34846627 | MS.gene056337:CDS |
| CTGTGGATTTGTACCTGCAA+AGG | 0.576366 | 4.1:+34846569 | None:intergenic |
| CTAGTGAATTGGAGAGTGCA+AGG | 0.578519 | 4.1:-34847725 | MS.gene056337:CDS |
| CGAGAATAGAGACGTGGCGT+TGG | 0.578816 | 4.1:-34847475 | MS.gene056337:CDS |
| TTCAGACTGAAACGACGAGT+GGG | 0.579873 | 4.1:+34847662 | None:intergenic |
| TAGGAACTTGAGCTGGAATG+AGG | 0.582495 | 4.1:-34846923 | MS.gene056337:CDS |
| TTCTGGTTGTACGATACAAG+TGG | 0.583451 | 4.1:+34848062 | None:intergenic |
| TTAGCAATCTTCCTCAGAGA+GGG | 0.584944 | 4.1:-34847305 | MS.gene056337:CDS |
| CTATCTTTAACATAAAACCC+TGG | 0.589585 | 4.1:+34846610 | None:intergenic |
| TTCCATATAGCGATGATCAA+AGG | 0.589637 | 4.1:+34846684 | None:intergenic |
| GAAGCAATCCATGCAGACGC+AGG | 0.589707 | 4.1:-34847361 | MS.gene056337:CDS |
| CTTCATGCTGCTTTAATGCG+AGG | 0.590460 | 4.1:-34848999 | MS.gene056337:CDS |
| CCTGATCCAATTTAGAGTAG+TGG | 0.590540 | 4.1:+34846828 | None:intergenic |
| AAGATATGAGTCCTAGGTCA+CGG | 0.591124 | 4.1:-34846663 | MS.gene056337:CDS |
| CGAATGACGAGAATTTCGCT+TGG | 0.594200 | 4.1:+34846953 | None:intergenic |
| ATCCATGCAGACGCAGGCAA+GGG | 0.596130 | 4.1:-34847355 | MS.gene056337:CDS |
| GAGAAACAGAGCGTGAAACA+GGG | 0.602864 | 4.1:+34848940 | None:intergenic |
| AATGAGGAAGTAATGATAGA+GGG | 0.603683 | 4.1:-34847243 | MS.gene056337:CDS |
| ACAGAGCGTGAAACAGGGGA+AGG | 0.616115 | 4.1:+34848945 | None:intergenic |
| TCCAAGTAGAGCAGAATCTG+AGG | 0.620203 | 4.1:-34847571 | MS.gene056337:CDS |
| AAACGACGAGTGGGAATCCG+TGG | 0.621697 | 4.1:+34847671 | None:intergenic |
| TCAACCCTTAAAACTCCCAA+TGG | 0.624174 | 4.1:+34846718 | None:intergenic |
| TAAACCAAGTTCAAGAAAAG+GGG | 0.629543 | 4.1:-34847952 | MS.gene056337:CDS |
| TCAATTGGTTTCCCTCTCTG+AGG | 0.637014 | 4.1:+34847294 | None:intergenic |
| ACATATGTGAGATTCTAGGT+TGG | 0.637680 | 4.1:+34847908 | None:intergenic |
| CTTAGCAATCTTCCTCAGAG+AGG | 0.638970 | 4.1:-34847306 | MS.gene056337:CDS |
| TTTCAGACTGAAACGACGAG+TGG | 0.641833 | 4.1:+34847661 | None:intergenic |
| TTGTAGCTGCAAAATGCATG+TGG | 0.649740 | 4.1:-34846774 | MS.gene056337:CDS |
| GGTTGCCATAGCCAAAGCTG+TGG | 0.663368 | 4.1:-34849033 | MS.gene056337:CDS |
| ATATTGTTAGGCATTTCGTG+TGG | 0.667524 | 4.1:+34848039 | None:intergenic |
| TCTGGTTGTACGATACAAGT+GGG | 0.669806 | 4.1:+34848063 | None:intergenic |
| AAAGGGGTACTACTACCTTG+TGG | 0.678852 | 4.1:-34847936 | MS.gene056337:CDS |
| TCTAGGTTGGTAAAACCACA+AGG | 0.696108 | 4.1:+34847921 | None:intergenic |
| AGAAACAGAGCGTGAAACAG+GGG | 0.697253 | 4.1:+34848941 | None:intergenic |
| AGCGAACGAGAATAGAGACG+TGG | 0.717689 | 4.1:-34847481 | MS.gene056337:CDS |
| GTCTGAAACGAAAAGCAAAG+GGG | 0.723496 | 4.1:-34847646 | MS.gene056337:CDS |
| GATATGAGTCCTAGGTCACG+GGG | 0.747053 | 4.1:-34846661 | MS.gene056337:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAGTTACTTTTGATT+TGG | - | chr4.1:34846889-34846908 | MS.gene056337:CDS | 15.0% |
| !!! | AATTGTATTTTTCAAAAGAA+CGG | - | chr4.1:34848668-34848687 | MS.gene056337:intron | 15.0% |
| !! | AGAATAAATAAGATAGAGAA+AGG | + | chr4.1:34847106-34847125 | None:intergenic | 20.0% |
| !! | AGATAATAAACATCATCATT+AGG | + | chr4.1:34847248-34847267 | None:intergenic | 20.0% |
| !! | ATCAAGAAAATCAAAATTGA+AGG | + | chr4.1:34846816-34846835 | None:intergenic | 20.0% |
| !! | ATTGCATATTTCATAAATTC+AGG | + | chr4.1:34846975-34846994 | None:intergenic | 20.0% |
| !! | TGTTACTATTATCATTGATA+GGG | - | chr4.1:34846934-34846953 | MS.gene056337:CDS | 20.0% |
| !! | TTGTTACTATTATCATTGAT+AGG | - | chr4.1:34846933-34846952 | MS.gene056337:CDS | 20.0% |
| !! | TTTCTAAACATGAGAATTAT+TGG | - | chr4.1:34847574-34847593 | MS.gene056337:CDS | 20.0% |
| !!! | GCATTTTCTCAAATTATTAT+TGG | + | chr4.1:34847392-34847411 | None:intergenic | 20.0% |
| !!! | TAAAAAGATTAATTTTGGAG+TGG | + | chr4.1:34847525-34847544 | None:intergenic | 20.0% |
| !!! | TCATTGTCATGTAAATTTTA+AGG | - | chr4.1:34847182-34847201 | MS.gene056337:CDS | 20.0% |
| !!! | TTTCTTCAATGTTGTTTATA+AGG | + | chr4.1:34848514-34848533 | None:intergenic | 20.0% |
| !!! | TTTGATTTTCTTGATGAAAA+GGG | - | chr4.1:34846821-34846840 | MS.gene056337:CDS | 20.0% |
| !!! | TTTTGATTTTCTTGATGAAA+AGG | - | chr4.1:34846820-34846839 | MS.gene056337:CDS | 20.0% |
| ! | AAATACAATTCTCAAAGTCT+TGG | + | chr4.1:34848658-34848677 | None:intergenic | 25.0% |
| ! | AATCAAAATTGAAGGAAAGA+AGG | + | chr4.1:34846808-34846827 | None:intergenic | 25.0% |
| ! | AATTCACTAGTTATAATTGC+AGG | + | chr4.1:34847942-34847961 | None:intergenic | 25.0% |
| ! | ATAAACCAAGTTCAAGAAAA+GGG | - | chr4.1:34847724-34847743 | MS.gene056337:CDS | 25.0% |
| ! | ATATTGATACAAATCTTCTG+AGG | + | chr4.1:34847312-34847331 | None:intergenic | 25.0% |
| ! | ATTCACTAGTTATAATTGCA+GGG | + | chr4.1:34847941-34847960 | None:intergenic | 25.0% |
| ! | GAATTTAGAGACAGTTTATA+CGG | + | chr4.1:34848578-34848597 | None:intergenic | 25.0% |
| ! | GATTTATGAAAGCTTCAAAA+TGG | + | chr4.1:34848625-34848644 | None:intergenic | 25.0% |
| ! | TGCAATTATAACTAGTGAAT+TGG | - | chr4.1:34847941-34847960 | MS.gene056337:CDS | 25.0% |
| ! | TTCATAAATTCAGGTACTTT+GGG | + | chr4.1:34846966-34846985 | None:intergenic | 25.0% |
| ! | TTTAATCTGTTCACAAAGTT+GGG | + | chr4.1:34848351-34848370 | None:intergenic | 25.0% |
| ! | TTTCATAAATTCAGGTACTT+TGG | + | chr4.1:34846967-34846986 | None:intergenic | 25.0% |
| !! | AGTTCAAATTTTCTGTCAAT+GGG | + | chr4.1:34848544-34848563 | None:intergenic | 25.0% |
| !! | ATGTTAAAGATAGGGTATTA+AGG | - | chr4.1:34849077-34849096 | MS.gene056337:CDS | 25.0% |
| !! | TCATAATTTGTGAGAATTAC+AGG | + | chr4.1:34847013-34847032 | None:intergenic | 25.0% |
| !! | TTTATTCCTTGTTTATAGCT+TGG | - | chr4.1:34847035-34847054 | MS.gene056337:CDS | 25.0% |
| !! | TTTTCATCATTTCCATCAAT+TGG | + | chr4.1:34848401-34848420 | None:intergenic | 25.0% |
| !!! | AGGGTTTTATGTTAAAGATA+GGG | - | chr4.1:34849069-34849088 | MS.gene056337:CDS | 25.0% |
| !!! | TTTTGAAGCTTTCATAAATC+AGG | - | chr4.1:34848625-34848644 | MS.gene056337:intron | 25.0% |
| AAACTGGTGTACAAGATTAT+AGG | - | chr4.1:34847700-34847719 | MS.gene056337:CDS | 30.0% | |
| AACTACAAGACAGGAAATTA+AGG | - | chr4.1:34846623-34846642 | MS.gene056337:CDS | 30.0% | |
| AACTGGTGTACAAGATTATA+GGG | - | chr4.1:34847701-34847720 | MS.gene056337:CDS | 30.0% | |
| AATGAGGAAGTAATGATAGA+GGG | - | chr4.1:34848434-34848453 | MS.gene056337:intron | 30.0% | |
| CATAGGAATAATGTCAATTG+AGG | - | chr4.1:34848151-34848170 | MS.gene056337:intron | 30.0% | |
| CCTAACAATATCTGAAAGTT+GGG | - | chr4.1:34847650-34847669 | MS.gene056337:CDS | 30.0% | |
| CTATCTTTAACATAAAACCC+TGG | + | chr4.1:34849070-34849089 | None:intergenic | 30.0% | |
| CTGAGGACAATTATAAAGTT+GGG | + | chr4.1:34847295-34847314 | None:intergenic | 30.0% | |
| GAACTTTAAACTCTCATTCT+AGG | + | chr4.1:34847142-34847161 | None:intergenic | 30.0% | |
| GATAAACCAAGTTCAAGAAA+AGG | - | chr4.1:34847723-34847742 | MS.gene056337:CDS | 30.0% | |
| GTATTACCACTACTCTAAAT+TGG | - | chr4.1:34848843-34848862 | MS.gene056337:intron | 30.0% | |
| GTTTAATCTGTTCACAAAGT+TGG | + | chr4.1:34848352-34848371 | None:intergenic | 30.0% | |
| TAAACCAAGTTCAAGAAAAG+GGG | - | chr4.1:34847725-34847744 | MS.gene056337:CDS | 30.0% | |
| TAAGAGAAGAAACAGTTTAG+AGG | - | chr4.1:34847881-34847900 | MS.gene056337:CDS | 30.0% | |
| TCTAAATTCCAAGTACTCAA+AGG | - | chr4.1:34848589-34848608 | MS.gene056337:intron | 30.0% | |
| TCTGAGGACAATTATAAAGT+TGG | + | chr4.1:34847296-34847315 | None:intergenic | 30.0% | |
| TTAAATGTAACCATGTGTGT+TGG | - | chr4.1:34847417-34847436 | MS.gene056337:CDS | 30.0% | |
| TTAAGATCATGGTTAATCCA+GGG | - | chr4.1:34849050-34849069 | MS.gene056337:CDS | 30.0% | |
| TTTAAACTCTCATTCTAGGT+TGG | + | chr4.1:34847138-34847157 | None:intergenic | 30.0% | |
| ! | GAGTTCAAATTTTCTGTCAA+TGG | + | chr4.1:34848545-34848564 | None:intergenic | 30.0% |
| ! | GTTTTCAAAGACAACAACAA+TGG | - | chr4.1:34846591-34846610 | MS.gene056337:CDS | 30.0% |
| !! | CAGGGTTTTATGTTAAAGAT+AGG | - | chr4.1:34849068-34849087 | MS.gene056337:CDS | 30.0% |
| !!! | ATTAATTTTGGAGTGGAAGT+TGG | + | chr4.1:34847518-34847537 | None:intergenic | 30.0% |
| !!! | TTAATTTTGGAGTGGAAGTT+GGG | + | chr4.1:34847517-34847536 | None:intergenic | 30.0% |
| AAACTCAGAAACTACAAGAC+AGG | - | chr4.1:34846614-34846633 | MS.gene056337:CDS | 35.0% | |
| AAATTCAATGCCTGTGAATG+AGG | - | chr4.1:34848418-34848437 | MS.gene056337:intron | 35.0% | |
| AACCTTTGATCATCGCTATA+TGG | - | chr4.1:34848991-34849010 | MS.gene056337:CDS | 35.0% | |
| ACATATGTGAGATTCTAGGT+TGG | + | chr4.1:34847772-34847791 | None:intergenic | 35.0% | |
| ACCATGATCTTAACTTTGCT+TGG | + | chr4.1:34849043-34849062 | None:intergenic | 35.0% | |
| AGGAGATAGAAACTTTGCAT+TGG | + | chr4.1:34846715-34846734 | None:intergenic | 35.0% | |
| ATATCTGAAAGTTGGGATGA+AGG | - | chr4.1:34847657-34847676 | MS.gene056337:CDS | 35.0% | |
| ATATGGAAGATATGAGTCCT+AGG | - | chr4.1:34849008-34849027 | MS.gene056337:CDS | 35.0% | |
| ATATTGTTAGGCATTTCGTG+TGG | + | chr4.1:34847641-34847660 | None:intergenic | 35.0% | |
| ATCATTACTTCCTCATTCAC+AGG | + | chr4.1:34848431-34848450 | None:intergenic | 35.0% | |
| CAGAACATATGTGAGATTCT+AGG | + | chr4.1:34847776-34847795 | None:intergenic | 35.0% | |
| CCCAACTTTCAGATATTGTT+AGG | + | chr4.1:34847653-34847672 | None:intergenic | 35.0% | |
| GAATGAGGAAGTAATGATAG+AGG | - | chr4.1:34848433-34848452 | MS.gene056337:intron | 35.0% | |
| GAATTCTGAACTGAATCATG+TGG | - | chr4.1:34847216-34847235 | MS.gene056337:CDS | 35.0% | |
| GCCTAACAATATCTGAAAGT+TGG | - | chr4.1:34847649-34847668 | MS.gene056337:CDS | 35.0% | |
| GTTAAGATCATGGTTAATCC+AGG | - | chr4.1:34849049-34849068 | MS.gene056337:CDS | 35.0% | |
| TACCAACCAAGCTATAAACA+AGG | + | chr4.1:34847044-34847063 | None:intergenic | 35.0% | |
| TCCAAGCAAAGTTAAGATCA+TGG | - | chr4.1:34849039-34849058 | MS.gene056337:CDS | 35.0% | |
| TTATGCTTCTTCTTTAACCG+AGG | + | chr4.1:34848074-34848093 | None:intergenic | 35.0% | |
| TTCCATATAGCGATGATCAA+AGG | + | chr4.1:34848996-34849015 | None:intergenic | 35.0% | |
| ! | ACACCTTCAATCTAAAGTGT+CGG | - | chr4.1:34847477-34847496 | MS.gene056337:CDS | 35.0% |
| ! | AGATAGGGTATTAAGGTGTA+AGG | - | chr4.1:34849084-34849103 | MS.gene056337:CDS | 35.0% |
| ! | AGTCTGAAACGAAAAGCAAA+GGG | - | chr4.1:34848030-34848049 | MS.gene056337:CDS | 35.0% |
| ! | CATGACGGTCTATGAATTTT+GGG | + | chr4.1:34848697-34848716 | None:intergenic | 35.0% |
| ! | TATATGATTTGCACAAGAGC+CGG | + | chr4.1:34847820-34847839 | None:intergenic | 35.0% |
| ! | TCATGACGGTCTATGAATTT+TGG | + | chr4.1:34848698-34848717 | None:intergenic | 35.0% |
| ! | TTCCTTGTTTATAGCTTGGT+TGG | - | chr4.1:34847039-34847058 | MS.gene056337:CDS | 35.0% |
| ! | TTTTCTTTCAACCCACCATT+GGG | - | chr4.1:34848944-34848963 | MS.gene056337:CDS | 35.0% |
| !!! | TAATTTTGGAGTGGAAGTTG+GGG | + | chr4.1:34847516-34847535 | None:intergenic | 35.0% |
| AAGATATGAGTCCTAGGTCA+CGG | - | chr4.1:34849014-34849033 | MS.gene056337:CDS | 40.0% | |
| AGAATCTGAGGATGTTTCTC+AGG | - | chr4.1:34848118-34848137 | MS.gene056337:intron | 40.0% | |
| AGACCGACACTTTAGATTGA+AGG | + | chr4.1:34847483-34847502 | None:intergenic | 40.0% | |
| ATTCTCACAGGTGTGAAAAC+AGG | + | chr4.1:34846783-34846802 | None:intergenic | 40.0% | |
| CAGCTACAAAGAAAGCTTGA+AGG | + | chr4.1:34848892-34848911 | None:intergenic | 40.0% | |
| CCACTACTCTAAATTGGATC+AGG | - | chr4.1:34848849-34848868 | MS.gene056337:intron | 40.0% | |
| CTTACTCCTGTAGCTTTCAT+TGG | + | chr4.1:34847865-34847884 | None:intergenic | 40.0% | |
| GGAAAGAAGGAAATTCTCAC+AGG | + | chr4.1:34846795-34846814 | None:intergenic | 40.0% | |
| TCAACCCTTAAAACTCCCAA+TGG | + | chr4.1:34848962-34848981 | None:intergenic | 40.0% | |
| TCAGGAAACAGCATAGAAAC+TGG | - | chr4.1:34847684-34847703 | MS.gene056337:CDS | 40.0% | |
| TCTGGTTGTACGATACAAGT+GGG | + | chr4.1:34847617-34847636 | None:intergenic | 40.0% | |
| TGCAGGGTTACATTTATTGC+AGG | + | chr4.1:34847925-34847944 | None:intergenic | 40.0% | |
| TTAGCAATCTTCCTCAGAGA+GGG | - | chr4.1:34848372-34848391 | MS.gene056337:intron | 40.0% | |
| TTCTCACAGGTGTGAAAACA+GGG | + | chr4.1:34846782-34846801 | None:intergenic | 40.0% | |
| TTGTAGCTGCAAAATGCATG+TGG | - | chr4.1:34848903-34848922 | MS.gene056337:intron | 40.0% | |
| ! | AGTACCCCTTTTCTTGAACT+TGG | + | chr4.1:34847732-34847751 | None:intergenic | 40.0% |
| ! | CAATATTGTTGTTCCTGCCA+CGG | - | chr4.1:34847989-34848008 | MS.gene056337:CDS | 40.0% |
| ! | CAGTCTGAAACGAAAAGCAA+AGG | - | chr4.1:34848029-34848048 | MS.gene056337:CDS | 40.0% |
| ! | CCTGATCCAATTTAGAGTAG+TGG | + | chr4.1:34848852-34848871 | None:intergenic | 40.0% |
| ! | CTTTTCTTTCAACCCACCAT+TGG | - | chr4.1:34848943-34848962 | MS.gene056337:CDS | 40.0% |
| ! | GTCTGAAACGAAAAGCAAAG+GGG | - | chr4.1:34848031-34848050 | MS.gene056337:CDS | 40.0% |
| ! | TCTGAGATGCGATGTTCATT+GGG | - | chr4.1:34848233-34848252 | MS.gene056337:intron | 40.0% |
| ! | TGATTTCGTGGTTGTTTCCT+CGG | - | chr4.1:34848054-34848073 | MS.gene056337:CDS | 40.0% |
| ! | TTCTGGTTGTACGATACAAG+TGG | + | chr4.1:34847618-34847637 | None:intergenic | 40.0% |
| !! | CAATGGTGGGTTGAAAGAAA+AGG | + | chr4.1:34848945-34848964 | None:intergenic | 40.0% |
| !! | TCTAGGTTGGTAAAACCACA+AGG | + | chr4.1:34847759-34847778 | None:intergenic | 40.0% |
| !! | TGGAATGAGGTACTGAGAAA+GGG | - | chr4.1:34848767-34848786 | MS.gene056337:intron | 40.0% |
| !! | TTCTGAGATGCGATGTTCAT+TGG | - | chr4.1:34848232-34848251 | MS.gene056337:intron | 40.0% |
| AAAGCAAAGGGGTGATTTCG+TGG | - | chr4.1:34848042-34848061 | MS.gene056337:CDS | 45.0% | |
| ACCCTTAAAACTCCCAATGG+TGG | + | chr4.1:34848959-34848978 | None:intergenic | 45.0% | |
| AGAAACAGAGCGTGAAACAG+GGG | + | chr4.1:34846739-34846758 | None:intergenic | 45.0% | |
| AGACACAACACCAACACACA+TGG | + | chr4.1:34847430-34847449 | None:intergenic | 45.0% | |
| AGATATGAGTCCTAGGTCAC+GGG | - | chr4.1:34849015-34849034 | MS.gene056337:CDS | 45.0% | |
| AGCTCTTAGTTCCACAGCTT+TGG | + | chr4.1:34846658-34846677 | None:intergenic | 45.0% | |
| AGTGGAAGTTGGGGAATTAC+AGG | + | chr4.1:34847507-34847526 | None:intergenic | 45.0% | |
| AGTTGGGATGAAGGAGAATC+AGG | - | chr4.1:34847666-34847685 | MS.gene056337:CDS | 45.0% | |
| ATGACGAGAATTTCGCTTGG+CGG | + | chr4.1:34848724-34848743 | None:intergenic | 45.0% | |
| ATTTGCACAAGAGCCGGTTA+CGG | + | chr4.1:34847814-34847833 | None:intergenic | 45.0% | |
| CACCTACCAATGAAAGCTAC+AGG | - | chr4.1:34847856-34847875 | MS.gene056337:CDS | 45.0% | |
| CAGAACTGCCTTTGAGTACT+TGG | + | chr4.1:34848600-34848619 | None:intergenic | 45.0% | |
| CAGAGAGGGAAACCAATTGA+TGG | - | chr4.1:34848386-34848405 | MS.gene056337:intron | 45.0% | |
| CCCTTAAAACTCCCAATGGT+GGG | + | chr4.1:34848958-34848977 | None:intergenic | 45.0% | |
| CGAATGACGAGAATTTCGCT+TGG | + | chr4.1:34848727-34848746 | None:intergenic | 45.0% | |
| CGTGGCAGGAACAACAATAT+TGG | + | chr4.1:34847991-34848010 | None:intergenic | 45.0% | |
| CTCCTGTAGCTTTCATTGGT+AGG | + | chr4.1:34847861-34847880 | None:intergenic | 45.0% | |
| CTCTAAATTGGATCAGGCCT+TGG | - | chr4.1:34848855-34848874 | MS.gene056337:intron | 45.0% | |
| CTGTGGATTTGTACCTGCAA+AGG | + | chr4.1:34849111-34849130 | None:intergenic | 45.0% | |
| CTTAGCAATCTTCCTCAGAG+AGG | - | chr4.1:34848371-34848390 | MS.gene056337:intron | 45.0% | |
| GAAGAGCAGACACAAAACAC+CGG | - | chr4.1:34847344-34847363 | MS.gene056337:CDS | 45.0% | |
| GAGAAACAGAGCGTGAAACA+GGG | + | chr4.1:34846740-34846759 | None:intergenic | 45.0% | |
| GATGACACCAAATCCGTAAC+CGG | - | chr4.1:34847798-34847817 | MS.gene056337:CDS | 45.0% | |
| GGATGTTTCTCAGGTTCTCA+AGG | - | chr4.1:34848127-34848146 | MS.gene056337:intron | 45.0% | |
| TAAGGTGTAAGGTCCTTTGC+AGG | - | chr4.1:34849095-34849114 | MS.gene056337:CDS | 45.0% | |
| TAGGAACTTGAGCTGGAATG+AGG | - | chr4.1:34848754-34848773 | MS.gene056337:intron | 45.0% | |
| TCCAAGTAGAGCAGAATCTG+AGG | - | chr4.1:34848106-34848125 | MS.gene056337:intron | 45.0% | |
| TCCTCAGATTCTGCTCTACT+TGG | + | chr4.1:34848110-34848129 | None:intergenic | 45.0% | |
| TCTCAGGTTCTCAAGGACAT+AGG | - | chr4.1:34848134-34848153 | MS.gene056337:intron | 45.0% | |
| TCTCGTCATTCGTTGCTCTT+AGG | - | chr4.1:34848735-34848754 | MS.gene056337:intron | 45.0% | |
| TGACGAGTCAGTATTGTGTC+CGG | + | chr4.1:34847366-34847385 | None:intergenic | 45.0% | |
| TGAGAAACAGAGCGTGAAAC+AGG | + | chr4.1:34846741-34846760 | None:intergenic | 45.0% | |
| TTAGGCATTTCGTGTGGTTC+TGG | + | chr4.1:34847635-34847654 | None:intergenic | 45.0% | |
| TTCAGACTGAAACGACGAGT+GGG | + | chr4.1:34848018-34848037 | None:intergenic | 45.0% | |
| TTGCTCTTAGGAACTTGAGC+TGG | - | chr4.1:34848747-34848766 | MS.gene056337:intron | 45.0% | |
| TTTCAGACTGAAACGACGAG+TGG | + | chr4.1:34848019-34848038 | None:intergenic | 45.0% | |
| ! | ACCCACCATTGGGAGTTTTA+AGG | - | chr4.1:34848954-34848973 | MS.gene056337:CDS | 45.0% |
| ! | CTAGTGAATTGGAGAGTGCA+AGG | - | chr4.1:34847952-34847971 | MS.gene056337:CDS | 45.0% |
| ! | GAGACAGAAGATGGAGTACT+TGG | - | chr4.1:34848262-34848281 | MS.gene056337:intron | 45.0% |
| ! | TAGTTCCACAGCTTTGGCTA+TGG | + | chr4.1:34846652-34846671 | None:intergenic | 45.0% |
| ! | TCAATTGGTTTCCCTCTCTG+AGG | + | chr4.1:34848386-34848405 | None:intergenic | 45.0% |
| !! | AAAGGGGTACTACTACCTTG+TGG | - | chr4.1:34847741-34847760 | MS.gene056337:CDS | 45.0% |
| !! | CCCACCATTGGGAGTTTTAA+GGG | - | chr4.1:34848955-34848974 | MS.gene056337:CDS | 45.0% |
| !! | CTGGAATGAGGTACTGAGAA+AGG | - | chr4.1:34848766-34848785 | MS.gene056337:intron | 45.0% |
| !! | CTTCATGCTGCTTTAATGCG+AGG | - | chr4.1:34846678-34846697 | MS.gene056337:CDS | 45.0% |
| !!! | AAAATTAAAAAGATTAATTT+TGG | + | chr4.1:34847530-34847549 | None:intergenic | 5.0% |
| !!! | TAATTTTTTTTTTATTTTGA+TGG | - | chr4.1:34847543-34847562 | MS.gene056337:CDS | 5.0% |
| AAAGCTTGAAGGAGCTGCTC+AGG | + | chr4.1:34848881-34848900 | None:intergenic | 50.0% | |
| ACAAGAGCCGGTTACGGATT+TGG | + | chr4.1:34847808-34847827 | None:intergenic | 50.0% | |
| AGCGAACGAGAATAGAGACG+TGG | - | chr4.1:34848196-34848215 | MS.gene056337:intron | 50.0% | |
| GATATGAGTCCTAGGTCACG+GGG | - | chr4.1:34849016-34849035 | MS.gene056337:CDS | 50.0% | |
| GGGAGAGTTGAGACAGAAGA+TGG | - | chr4.1:34848253-34848272 | MS.gene056337:intron | 50.0% | |
| AAACGACGAGTGGGAATCCG+TGG | + | chr4.1:34848009-34848028 | None:intergenic | 55.0% | |
| AATCCATGCAGACGCAGGCA+AGG | - | chr4.1:34848321-34848340 | MS.gene056337:intron | 55.0% | |
| ACAGAGCGTGAAACAGGGGA+AGG | + | chr4.1:34846735-34846754 | None:intergenic | 55.0% | |
| ATCCATGCAGACGCAGGCAA+GGG | - | chr4.1:34848322-34848341 | MS.gene056337:intron | 55.0% | |
| CGAGAATAGAGACGTGGCGT+TGG | - | chr4.1:34848202-34848221 | MS.gene056337:intron | 55.0% | |
| GAAGCAATCCATGCAGACGC+AGG | - | chr4.1:34848316-34848335 | MS.gene056337:intron | 55.0% | |
| GGTTGCCATAGCCAAAGCTG+TGG | - | chr4.1:34846644-34846663 | MS.gene056337:CDS | 55.0% | |
| TCGCTTGGCGGTCTTCATGA+CGG | + | chr4.1:34848712-34848731 | None:intergenic | 55.0% | |
| ! | GAATAGAGACGTGGCGTTGG+TGG | - | chr4.1:34848205-34848224 | MS.gene056337:intron | 55.0% |
| ATCCCTTGCCTGCGTCTGCA+TGG | + | chr4.1:34848327-34848346 | None:intergenic | 60.0% | |
| GCCTCACACACGTCAGACGT+CGG | - | chr4.1:34847452-34847471 | MS.gene056337:CDS | 60.0% | |
| TCCGACGTCTGACGTGTGTG+AGG | + | chr4.1:34847456-34847475 | None:intergenic | 60.0% | |
| TGAAGGAGCTGCTCAGGCCA+AGG | + | chr4.1:34848875-34848894 | None:intergenic | 60.0% | |
| TTGCTTGGACCCCGTGACCT+AGG | + | chr4.1:34849028-34849047 | None:intergenic | 60.0% | |
| GACGAGTGGGAATCCGTGGC+AGG | + | chr4.1:34848005-34848024 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 34846564 | 34849135 | 34846564 | ID=MS.gene056337 |
| chr4.1 | mRNA | 34846564 | 34849135 | 34846564 | ID=MS.gene056337.t1;Parent=MS.gene056337 |
| chr4.1 | exon | 34848905 | 34849135 | 34848905 | ID=MS.gene056337.t1.exon1;Parent=MS.gene056337.t1 |
| chr4.1 | CDS | 34848905 | 34849135 | 34848905 | ID=cds.MS.gene056337.t1;Parent=MS.gene056337.t1 |
| chr4.1 | exon | 34846564 | 34848099 | 34846564 | ID=MS.gene056337.t1.exon2;Parent=MS.gene056337.t1 |
| chr4.1 | CDS | 34846564 | 34848099 | 34846564 | ID=cds.MS.gene056337.t1;Parent=MS.gene056337.t1 |
| Gene Sequence |
| Protein sequence |
