AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68280.t1 MTR_5g034910 85.673 342 19 2 1 312 1 342 0.0 572
MS.gene68280.t1 MTR_5g034930 66.185 346 81 4 1 311 1 345 1.84e-152 431
MS.gene68280.t1 MTR_5g034980 64.000 325 87 2 5 299 5 329 1.30e-142 406
MS.gene68280.t1 MTR_5g034970 62.275 334 83 3 1 304 1 321 1.31e-130 375
MS.gene68280.t1 MTR_5g034980 58.846 260 73 3 5 234 5 260 2.13e-97 290
MS.gene68280.t1 MTR_5g034990 39.091 330 162 5 19 312 26 352 5.92e-69 219
MS.gene68280.t1 MTR_4g106720 42.006 319 154 4 10 297 14 332 1.29e-64 207
MS.gene68280.t1 MTR_0103s0090 40.752 319 150 6 12 296 16 329 2.22e-63 204
MS.gene68280.t1 MTR_0103s0090 46.025 239 120 3 62 296 5 238 7.60e-62 197
MS.gene68280.t1 MTR_3g090550 42.146 261 140 3 48 303 76 330 6.65e-61 197
MS.gene68280.t1 MTR_1g014510 37.500 320 165 6 12 297 16 334 6.63e-60 198
MS.gene68280.t1 MTR_6g007750 43.033 244 131 3 56 296 93 331 3.24e-55 184
MS.gene68280.t1 MTR_6g007743 40.164 244 143 1 53 296 88 328 3.49e-55 183
MS.gene68280.t1 MTR_6g007760 41.228 228 118 2 56 275 90 309 6.43e-54 179
MS.gene68280.t1 MTR_6g007747 41.353 266 142 3 54 310 87 347 2.47e-53 178
MS.gene68280.t1 MTR_6g007753 42.739 241 135 1 56 296 375 612 6.09e-53 184
MS.gene68280.t1 MTR_6g007753 39.614 207 122 1 90 296 85 288 8.81e-40 147
MS.gene68280.t1 MTR_6g007757 45.267 243 126 2 56 296 92 329 1.52e-51 174
MS.gene68280.t1 MTR_3g072500 36.220 254 150 3 56 302 99 347 7.91e-49 167
MS.gene68280.t1 MTR_3g072500 35.743 249 148 3 61 302 1 244 3.84e-48 163
MS.gene68280.t1 MTR_3g072560 36.400 250 156 2 56 305 97 343 6.47e-47 162
MS.gene68280.t1 MTR_3g012420 32.121 330 182 8 4 296 14 338 1.53e-46 162
MS.gene68280.t1 MTR_1g030580 37.052 251 148 2 56 301 95 340 3.89e-46 160
MS.gene68280.t1 MTR_8g041390 35.270 241 149 3 62 296 98 337 1.66e-44 156
MS.gene68280.t1 MTR_6g007740 39.271 247 141 3 53 296 88 328 2.05e-44 158
MS.gene68280.t1 MTR_6g081840 32.830 265 170 2 53 311 86 348 2.19e-42 150
MS.gene68280.t1 MTR_3g072530 34.375 256 159 5 56 306 93 344 7.25e-42 149
MS.gene68280.t1 MTR_1g038560 33.577 274 171 4 27 297 57 322 1.39e-41 147
MS.gene68280.t1 MTR_1g074160 32.794 247 153 4 63 303 99 338 2.21e-41 147
MS.gene68280.t1 MTR_0096s0100 30.924 249 170 2 56 303 97 344 2.47e-40 144
MS.gene68280.t1 MTR_7g100050 31.579 323 178 7 12 297 18 334 1.02e-39 143
MS.gene68280.t1 MTR_1g074120 32.932 249 150 6 63 303 102 341 1.27e-39 142
MS.gene68280.t1 MTR_3g095460 31.855 248 166 1 58 302 86 333 4.68e-39 140
MS.gene68280.t1 MTR_1g114210 31.557 244 166 1 53 295 85 328 5.60e-39 140
MS.gene68280.t1 MTR_4g129650 35.802 243 149 3 62 302 96 333 6.63e-39 141
MS.gene68280.t1 MTR_1g074020 33.603 247 151 4 63 303 99 338 7.20e-39 140
MS.gene68280.t1 MTR_1g068630 33.603 247 153 4 56 297 94 334 1.22e-38 140
MS.gene68280.t1 MTR_1g070175 28.514 249 174 1 63 311 102 346 6.38e-38 138
MS.gene68280.t1 MTR_1g051120 33.061 245 161 3 61 303 100 343 1.25e-37 137
MS.gene68280.t1 MTR_4g129650 35.965 228 139 3 74 299 1 223 3.21e-37 134
MS.gene68280.t1 MTR_1g030600 31.321 265 163 4 56 309 97 353 5.61e-37 136
MS.gene68280.t1 MTR_2g027030 30.275 327 194 5 2 295 7 332 1.14e-36 135
MS.gene68280.t1 MTR_1g073990 32.661 248 153 4 63 303 102 342 2.19e-36 134
MS.gene68280.t1 MTR_2g016710 31.048 248 159 3 53 295 84 324 2.76e-36 134
MS.gene68280.t1 MTR_8g092650 34.211 228 142 3 76 296 26 252 2.91e-36 131
MS.gene68280.t1 MTR_3g112480 30.153 262 170 2 53 301 41 302 3.83e-36 133
MS.gene68280.t1 MTR_1g023180 28.731 268 173 1 53 302 97 364 4.25e-36 134
MS.gene68280.t1 MTR_7g111830 29.070 258 175 3 53 302 83 340 8.55e-36 133
MS.gene68280.t1 MTR_2g007990 29.586 338 203 6 2 306 10 345 1.07e-35 133
MS.gene68280.t1 MTR_3g112480 27.193 342 204 5 4 301 17 357 1.17e-35 133
MS.gene68280.t1 MTR_2g007960 27.711 332 200 4 3 295 8 338 1.68e-35 132
MS.gene68280.t1 MTR_8g006010 32.932 249 163 3 49 295 82 328 1.75e-35 132
MS.gene68280.t1 MTR_1g074070 30.364 247 159 4 63 303 102 341 2.25e-35 131
MS.gene68280.t1 MTR_8g092650 34.361 227 143 2 76 296 104 330 2.55e-35 131
MS.gene68280.t1 MTR_2g007970 29.448 326 198 3 2 295 7 332 3.37e-35 131
MS.gene68280.t1 MTR_5g021160 29.218 243 170 1 61 301 8 250 8.10e-35 128
MS.gene68280.t1 MTR_5g021160 25.526 333 216 4 1 301 1 333 6.06e-34 127
MS.gene68280.t1 MTR_6g036450 30.980 255 173 2 53 304 91 345 3.27e-33 125
MS.gene68280.t1 MTR_1g030400 28.679 265 166 3 53 302 83 339 4.35e-33 125
MS.gene68280.t1 MTR_4g094352 32.576 264 162 6 58 312 94 350 1.71e-32 124
MS.gene68280.t1 MTR_6g007757 42.353 170 91 2 56 223 92 256 5.04e-32 120
MS.gene68280.t1 MTR_2g065550 30.000 240 167 1 56 295 91 329 7.51e-32 122
MS.gene68280.t1 MTR_4g094340 31.250 240 160 2 66 301 31 269 1.12e-31 120
MS.gene68280.t1 MTR_5g025400 32.319 263 160 4 56 301 90 351 2.37e-31 121
MS.gene68280.t1 MTR_4g094340 28.395 324 196 5 12 301 14 335 2.49e-31 120
MS.gene68280.t1 MTR_5g025370 32.184 261 159 4 56 299 89 348 2.50e-31 121
MS.gene68280.t1 MTR_3g072520 30.709 254 173 2 56 306 88 341 3.01e-31 120
MS.gene68280.t1 MTR_4g094340 28.395 324 196 5 12 301 32 353 3.13e-31 120
MS.gene68280.t1 MTR_5g025330 31.418 261 163 3 56 301 88 347 7.56e-31 122
MS.gene68280.t1 MTR_3g095420 30.709 254 161 4 61 305 93 340 9.15e-31 119
MS.gene68280.t1 MTR_5g025340 31.783 258 158 4 56 297 89 344 1.67e-30 119
MS.gene68280.t1 MTR_4g094342 30.962 239 158 3 58 290 94 331 2.12e-30 118
MS.gene68280.t1 MTR_4g094362 31.169 231 157 1 67 295 104 334 2.35e-30 118
MS.gene68280.t1 MTR_4g094360 29.664 327 195 6 3 295 10 335 4.64e-30 117
MS.gene68280.t1 MTR_3g072500 38.286 175 96 3 56 223 99 268 4.66e-30 115
MS.gene68280.t1 MTR_3g095450 31.076 251 163 3 61 305 91 337 6.54e-30 117
MS.gene68280.t1 MTR_8g006120 31.624 234 158 2 76 308 110 342 7.52e-30 117
MS.gene68280.t1 MTR_5g089390 28.689 244 169 2 55 298 92 330 7.91e-30 116
MS.gene68280.t1 MTR_4g094360 31.557 244 162 2 56 295 46 288 9.51e-30 116
MS.gene68280.t1 MTR_2g016710 31.278 227 144 3 53 274 84 303 2.78e-29 114
MS.gene68280.t1 MTR_5g025290 29.433 282 170 6 56 313 90 366 2.31e-28 113
MS.gene68280.t1 MTR_5g025290 29.433 282 170 6 56 313 118 394 5.06e-28 112
MS.gene68280.t1 MTR_3g019050 28.936 235 166 1 62 295 103 337 5.20e-28 112
MS.gene68280.t1 MTR_5g069040 27.586 261 170 3 62 314 103 352 6.38e-28 112
MS.gene68280.t1 MTR_2g102340 31.746 252 163 4 69 312 104 354 6.98e-28 111
MS.gene68280.t1 MTR_8g006090 28.151 238 169 2 76 312 31 267 2.07e-27 108
MS.gene68280.t1 MTR_3g112480 28.261 230 152 2 85 301 1 230 3.60e-27 107
MS.gene68280.t1 MTR_2g007260 29.003 331 196 6 3 295 10 339 5.03e-27 109
MS.gene68280.t1 MTR_5g068790 27.027 259 172 3 62 314 103 350 6.77e-27 108
MS.gene68280.t1 MTR_8g006090 28.151 238 169 2 76 312 111 347 1.03e-26 108
MS.gene68280.t1 MTR_8g072350 29.344 259 163 4 56 297 88 343 1.21e-26 108
MS.gene68280.t1 MTR_1g052205 28.378 222 145 6 87 303 10 222 2.28e-25 102
MS.gene68280.t1 MTR_1g014790 36.190 210 109 7 16 210 3 202 5.91e-25 100
MS.gene68280.t1 MTR_5g012650 27.778 252 176 3 48 295 79 328 3.30e-24 101
MS.gene68280.t1 MTR_4g094360 29.180 305 181 6 3 273 10 313 6.40e-23 97.1
MS.gene68280.t1 MTR_3g095440 28.627 255 166 5 60 305 90 337 2.38e-22 96.3
MS.gene68280.t1 MTR_8g006050 27.347 245 163 2 53 295 71 302 7.12e-22 94.7
MS.gene68280.t1 MTR_1g074160 32.934 167 99 4 62 222 98 257 7.26e-22 93.2
MS.gene68280.t1 MTR_4g100840 27.863 262 184 4 53 309 91 352 2.43e-21 93.2
MS.gene68280.t1 MTR_5g021160 25.564 266 164 5 1 233 1 265 2.87e-19 86.3
MS.gene68280.t1 MTR_3g072530 29.268 205 107 5 56 223 93 296 3.83e-18 83.6
MS.gene68280.t1 MTR_3g072500 39.344 122 62 3 56 170 99 215 1.88e-17 80.1
MS.gene68280.t1 MTR_8g006090 25.628 199 146 2 76 273 111 308 8.08e-17 79.7
MS.gene68280.t1 MTR_4g094340 27.381 252 148 6 12 230 14 263 4.84e-13 68.6
MS.gene68280.t1 MTR_4g094340 27.381 252 148 6 12 230 32 281 7.02e-13 68.2
MS.gene68280.t1 MTR_2g102340 26.641 259 158 5 3 230 34 291 1.44e-11 64.7
MS.gene68280.t1 MTR_3g095440 28.070 171 109 4 61 222 91 256 2.40e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68280.t1 AT5G40240 40.828 338 165 6 10 312 22 359 1.27e-70 223
MS.gene68280.t1 AT5G40240 40.828 338 165 6 10 312 22 359 1.27e-70 223
MS.gene68280.t1 AT5G40240 40.237 338 167 5 10 312 36 373 3.68e-70 223
MS.gene68280.t1 AT5G40230 40.816 343 152 6 12 311 25 359 2.11e-69 220
MS.gene68280.t1 AT3G28050 42.320 319 148 7 8 295 13 326 4.31e-67 214
MS.gene68280.t1 AT5G40210 41.231 325 142 8 4 297 10 316 1.20e-62 202
MS.gene68280.t1 AT3G28080 38.951 267 138 5 61 311 8 265 4.46e-57 185
MS.gene68280.t1 AT3G28080 38.951 267 138 5 61 311 8 265 4.46e-57 185
MS.gene68280.t1 AT3G28080 38.951 267 138 5 61 311 8 265 4.46e-57 185
MS.gene68280.t1 AT3G28080 38.951 267 138 5 61 311 8 265 4.46e-57 185
MS.gene68280.t1 AT3G28070 42.692 260 137 6 61 311 8 264 7.34e-57 185
MS.gene68280.t1 AT3G28080 38.951 267 138 5 61 311 89 346 3.12e-56 186
MS.gene68280.t1 AT3G28080 38.951 267 138 5 61 311 97 354 3.45e-56 186
MS.gene68280.t1 AT3G28070 42.692 260 137 6 61 311 100 356 8.53e-56 185
MS.gene68280.t1 AT4G15540 45.000 240 116 3 62 298 101 327 1.32e-55 184
MS.gene68280.t1 AT4G15540 45.000 240 116 3 62 298 101 327 1.32e-55 184
MS.gene68280.t1 AT3G28100 40.726 248 127 4 61 297 97 335 4.78e-55 183
MS.gene68280.t1 AT3G28130 42.798 243 131 5 61 298 10 249 1.16e-53 177
MS.gene68280.t1 AT3G28130 42.798 243 131 5 61 298 10 249 1.16e-53 177
MS.gene68280.t1 AT3G28130 36.970 330 170 8 4 298 9 335 4.85e-53 177
MS.gene68280.t1 AT4G08300 33.865 251 163 2 56 303 89 339 3.13e-45 157
MS.gene68280.t1 AT2G39510 36.905 252 156 3 50 299 80 330 5.65e-45 157
MS.gene68280.t1 AT3G28070 42.661 218 117 5 61 273 100 314 8.14e-44 152
MS.gene68280.t1 AT3G28080 35.443 237 128 5 91 311 1 228 3.58e-43 148
MS.gene68280.t1 AT1G21890 32.946 258 162 2 56 303 89 345 9.28e-43 152
MS.gene68280.t1 AT3G28070 39.130 230 128 6 91 311 1 227 9.41e-43 147
MS.gene68280.t1 AT5G07050 31.915 329 185 7 12 301 22 350 2.31e-42 151
MS.gene68280.t1 AT3G18200 33.465 254 159 3 53 302 110 357 1.48e-41 148
MS.gene68280.t1 AT1G44800 32.129 249 167 2 56 303 89 336 2.74e-41 147
MS.gene68280.t1 AT3G28130 39.437 213 121 5 91 298 1 210 1.50e-40 141
MS.gene68280.t1 AT4G08290 34.034 238 153 2 61 295 96 332 4.67e-40 144
MS.gene68280.t1 AT3G30340 31.298 262 169 2 50 305 83 339 4.05e-39 141
MS.gene68280.t1 AT4G30420 32.340 235 157 2 62 295 86 319 5.92e-39 141
MS.gene68280.t1 AT4G30420 32.340 235 157 2 62 295 96 329 6.75e-39 141
MS.gene68280.t1 AT1G09380 32.143 252 151 2 53 292 83 326 2.07e-38 140
MS.gene68280.t1 AT4G01440 29.200 250 177 0 56 305 88 337 6.31e-38 138
MS.gene68280.t1 AT3G28080 33.333 270 103 5 57 311 4 211 1.66e-37 133
MS.gene68280.t1 AT5G13670 31.707 246 161 4 56 296 86 329 1.74e-37 137
MS.gene68280.t1 AT3G18200 32.618 233 147 3 74 302 1 227 2.57e-37 134
MS.gene68280.t1 AT3G28080 33.333 270 103 5 57 311 93 300 1.16e-36 133
MS.gene68280.t1 AT2G37460 32.463 268 166 6 34 295 73 331 2.88e-36 134
MS.gene68280.t1 AT1G70260 30.739 257 168 4 56 303 93 348 2.41e-35 132
MS.gene68280.t1 AT4G28040 34.711 242 140 6 62 298 94 322 4.29e-35 130
MS.gene68280.t1 AT4G28040 34.711 242 140 6 62 298 94 322 4.29e-35 130
MS.gene68280.t1 AT4G28040 34.711 242 140 6 62 298 94 322 4.29e-35 130
MS.gene68280.t1 AT4G28040 34.711 242 140 6 62 298 94 322 4.29e-35 130
MS.gene68280.t1 AT4G28040 34.711 242 140 6 62 298 94 322 4.29e-35 130
MS.gene68280.t1 AT4G01440 29.075 227 161 0 79 305 3 229 4.66e-35 128
MS.gene68280.t1 AT4G01440 29.075 227 161 0 79 305 3 229 4.66e-35 128
MS.gene68280.t1 AT1G75500 29.545 264 167 3 53 303 95 352 2.02e-34 129
MS.gene68280.t1 AT1G75500 29.545 264 167 3 53 303 95 352 2.02e-34 129
MS.gene68280.t1 AT2G37450 31.313 297 186 5 12 295 13 304 3.36e-34 127
MS.gene68280.t1 AT1G21890 32.900 231 144 2 56 276 89 318 8.24e-34 127
MS.gene68280.t1 AT2G40900 28.267 329 191 6 4 297 7 325 1.75e-33 127
MS.gene68280.t1 AT3G53210 28.685 251 164 3 61 303 36 279 4.27e-31 119
MS.gene68280.t1 AT3G56620 30.802 237 160 3 56 292 89 321 7.89e-31 119
MS.gene68280.t1 AT3G53210 28.685 251 164 3 61 303 93 336 1.19e-30 119
MS.gene68280.t1 AT4G01440 29.412 221 156 0 56 276 88 308 1.99e-30 117
MS.gene68280.t1 AT1G01070 30.000 250 167 4 55 299 46 292 4.29e-30 116
MS.gene68280.t1 AT2G37450 32.489 237 151 3 63 295 1 232 6.32e-30 114
MS.gene68280.t1 AT1G01070 29.804 255 171 4 50 299 88 339 9.29e-30 116
MS.gene68280.t1 AT5G64700 30.172 232 155 3 79 303 109 340 1.35e-29 116
MS.gene68280.t1 AT1G43650 29.583 240 166 2 58 297 87 323 2.02e-29 115
MS.gene68280.t1 AT1G68170 27.576 330 195 5 4 295 10 333 4.82e-29 114
MS.gene68280.t1 AT3G45870 30.488 246 159 2 56 290 90 334 6.07e-29 114
MS.gene68280.t1 AT1G68170 27.329 322 191 4 12 295 7 323 7.45e-29 114
MS.gene68280.t1 AT4G01430 30.233 258 168 6 50 299 81 334 1.90e-28 113
MS.gene68280.t1 AT5G47470 30.855 269 164 7 53 309 106 364 1.05e-27 110
MS.gene68280.t1 AT5G47470 30.855 269 164 7 53 309 134 392 1.53e-27 110
MS.gene68280.t1 AT4G19185 28.185 259 168 4 56 298 21 277 2.30e-27 109
MS.gene68280.t1 AT4G19185 28.185 259 168 4 56 298 99 355 7.05e-27 109
MS.gene68280.t1 AT5G47470 30.078 256 163 5 53 302 134 379 8.82e-27 108
MS.gene68280.t1 AT3G28100 36.158 177 94 3 61 226 97 265 1.30e-26 105
MS.gene68280.t1 AT5G45370 28.980 245 162 3 56 299 98 331 1.38e-26 107
MS.gene68280.t1 AT1G11450 28.099 242 172 2 55 295 1 241 1.69e-26 105
MS.gene68280.t1 AT1G11450 27.935 247 176 2 50 295 37 282 3.16e-26 105
MS.gene68280.t1 AT1G11450 27.935 247 176 2 50 295 44 289 4.95e-26 105
MS.gene68280.t1 AT1G11450 27.935 247 176 2 50 295 88 333 8.26e-26 105
MS.gene68280.t1 AT5G45370 28.185 259 170 4 56 299 98 355 1.16e-25 105
MS.gene68280.t1 AT5G45370 28.185 259 170 4 56 299 98 355 1.16e-25 105
MS.gene68280.t1 AT5G45370 27.953 254 167 4 61 299 1 253 1.65e-25 103
MS.gene68280.t1 AT5G45370 27.953 254 167 4 61 299 1 253 1.65e-25 103
MS.gene68280.t1 AT1G11460 28.685 251 170 6 50 295 88 334 1.88e-25 104
MS.gene68280.t1 AT4G08290 36.145 166 102 2 61 223 96 260 2.88e-25 102
MS.gene68280.t1 AT3G28130 33.730 252 130 7 4 220 9 258 5.13e-25 101
MS.gene68280.t1 AT1G25270 27.273 319 200 3 12 298 7 325 5.55e-25 103
MS.gene68280.t1 AT1G60050 28.295 258 174 4 56 303 94 350 7.91e-25 103
MS.gene68280.t1 AT3G45870 29.437 231 151 2 56 275 90 319 4.46e-24 100
MS.gene68280.t1 AT3G30340 33.146 178 112 2 50 223 83 257 4.59e-23 96.7
MS.gene68280.t1 AT4G01430 31.034 232 148 6 50 273 81 308 3.25e-22 95.1
MS.gene68280.t1 AT2G37450 29.858 211 139 3 89 295 60 265 4.21e-21 91.7
MS.gene68280.t1 AT4G01450 29.046 241 167 1 55 295 87 323 1.36e-20 91.3
MS.gene68280.t1 AT3G45870 27.830 212 141 2 90 290 49 259 2.60e-20 89.7
MS.gene68280.t1 AT4G01440 30.675 163 113 0 61 223 93 255 5.33e-20 88.2
MS.gene68280.t1 AT1G11450 27.111 225 162 2 50 273 88 311 9.03e-20 88.2
MS.gene68280.t1 AT4G01450 28.767 219 152 1 55 273 87 301 1.06e-19 88.6
MS.gene68280.t1 AT3G28060 42.017 119 53 4 163 273 44 154 5.58e-19 82.8
MS.gene68280.t1 AT4G24980 27.068 266 144 10 36 298 23 241 7.08e-19 85.1
MS.gene68280.t1 AT3G28100 39.837 123 56 2 61 173 97 211 9.42e-18 81.6
MS.gene68280.t1 AT4G01430 27.861 201 134 5 106 299 1 197 9.51e-18 81.3
MS.gene68280.t1 AT4G16620 27.642 246 165 4 62 302 97 334 1.30e-17 82.8
MS.gene68280.t1 AT5G45370 26.906 223 147 4 92 299 74 295 1.69e-17 82.0
MS.gene68280.t1 AT4G16620 27.686 242 162 4 66 302 4 237 2.03e-17 80.9
MS.gene68280.t1 AT4G16620 27.686 242 162 4 66 302 4 237 2.03e-17 80.9
MS.gene68280.t1 AT3G28130 45.833 120 59 3 61 176 96 213 2.10e-17 79.7
MS.gene68280.t1 AT3G53210 26.038 265 150 7 4 229 6 263 3.59e-17 80.1
MS.gene68280.t1 AT4G01450 30.723 166 111 1 55 220 87 248 4.66e-17 79.7
MS.gene68280.t1 AT3G45870 26.396 197 133 2 90 275 49 244 2.23e-15 75.1
MS.gene68280.t1 AT3G45870 26.396 197 133 2 90 275 49 244 2.23e-15 75.1
MS.gene68280.t1 AT3G45870 29.670 182 115 3 56 226 90 269 6.76e-15 73.9
MS.gene68280.t1 AT4G01450 33.065 124 79 1 55 178 87 206 1.10e-13 70.1
MS.gene68280.t1 AT3G45870 28.873 142 100 1 149 290 43 183 1.49e-13 69.3
MS.gene68280.t1 AT5G64700 30.464 151 98 3 79 222 109 259 1.91e-12 66.6
MS.gene68280.t1 AT1G43650 29.143 175 121 2 58 232 87 258 2.34e-12 66.6

Find 69 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTCGCCTAGGCACCTATTT+TGG 0.233543 5.2:-25306181 None:intergenic
CAGAGGGAAATTCAAAAGTT+TGG 0.240714 5.2:+25305059 MS.gene68280:CDS
ATATACAGACTTGGATTATA+AGG 0.260123 5.2:+25304957 MS.gene68280:intron
GAGTGTTACCACCCACTTCT+AGG 0.278870 5.2:-25303459 None:intergenic
GCCTTTCAAAATATAGATAT+TGG 0.282976 5.2:+25304613 MS.gene68280:CDS
CCTCTGTTGTCAACCAAAAT+AGG 0.289207 5.2:+25306168 MS.gene68280:CDS
CTTGTTACCACTAGCTCTTC+AGG 0.295870 5.2:-25304986 None:intergenic
AGCAGCCAAGCTAAAATAAT+TGG 0.302050 5.2:+25304523 MS.gene68280:CDS
GGCACAGTGGTCTCCATTGC+AGG 0.326321 5.2:+25304544 MS.gene68280:CDS
ACTTATTGTTGCAGCATGAT+TGG 0.348960 5.2:+25306060 MS.gene68280:intron
TTAACTGTGACATTATATAA+AGG 0.353485 5.2:+25304571 MS.gene68280:CDS
TCATACTTGCTTTAATTTCA+AGG 0.356799 5.2:+25303923 MS.gene68280:CDS
GTTAAATCAGATTGGATAGT+TGG 0.366365 5.2:+25304658 MS.gene68280:CDS
TTGAACATAGCTACATATAT+TGG 0.366626 5.2:-25305835 None:intergenic
TATACAGACTTGGATTATAA+GGG 0.382696 5.2:+25304958 MS.gene68280:intron
TTTGGATTCTCAGACCTGAT+AGG 0.386129 5.2:+25305077 MS.gene68280:CDS
ACCTTTCAGTTAAATCAGAT+TGG 0.389374 5.2:+25304650 MS.gene68280:CDS
CATATATTGGTCCTTTCTTA+CGG 0.398364 5.2:-25305822 None:intergenic
AATATAGATATTGGAGGAAG+TGG 0.416383 5.2:+25304622 MS.gene68280:CDS
ATCAAATCAGCCACCAATGA+TGG 0.421771 5.2:+25303484 MS.gene68280:CDS
ACAGCTACCAACTCCCTATC+AGG 0.429577 5.2:-25305091 None:intergenic
TGAAAGGCGTTACTAATCAA+TGG 0.433685 5.2:-25304598 None:intergenic
TTGGGAGACAGTCTTTATCT+TGG 0.441217 5.2:+25305901 MS.gene68280:CDS
AGTGCAATGACCATTCCTAA+TGG 0.441266 5.2:-25305859 None:intergenic
GATAGAGCCGGAGGATTTGA+AGG 0.460334 5.2:-25303699 None:intergenic
GTGCAATGACCATTCCTAAT+GGG 0.462955 5.2:-25305858 None:intergenic
TAACTGTGACATTATATAAA+GGG 0.467351 5.2:+25304572 MS.gene68280:CDS
GTAGCTATGTTCAACCCATT+AGG 0.469889 5.2:+25305844 MS.gene68280:CDS
GCAAGTATGAAGGTAAAAGC+AGG 0.494725 5.2:-25303910 None:intergenic
TTGGATTCTCAGACCTGATA+GGG 0.506332 5.2:+25305078 MS.gene68280:CDS
TGCAGTTCAATTCCTAGAAG+TGG 0.506993 5.2:+25303447 MS.gene68280:CDS
GGAGCTGCTATAATAGCCAT+TGG 0.524019 5.2:+25306081 MS.gene68280:CDS
TGAAATTAAAGCAAGTATGA+AGG 0.529601 5.2:-25303920 None:intergenic
TTAGGAATGGTCATTGCACT+TGG 0.530569 5.2:+25305862 MS.gene68280:CDS
GCACAGTGGTCTCCATTGCA+GGG 0.543263 5.2:+25304545 MS.gene68280:CDS
GAGACAGTCTTTATCTTGGA+AGG 0.547932 5.2:+25305905 MS.gene68280:CDS
CACAGTTAATGCCCCTGCAA+TGG 0.548584 5.2:-25304557 None:intergenic
TACTTTGACAACGATAGAGC+CGG 0.550740 5.2:-25303711 None:intergenic
ACATGGGCATTCCGTAAGAA+AGG 0.551083 5.2:+25305811 MS.gene68280:CDS
CACAGTGGTCTCCATTGCAG+GGG 0.557629 5.2:+25304546 MS.gene68280:CDS
AATGGTCATTGCACTTGGCA+TGG 0.561423 5.2:+25305867 MS.gene68280:CDS
TTTCAAAATATAGATATTGG+AGG 0.562558 5.2:+25304616 MS.gene68280:CDS
AATACTCATTCCATCATTGG+TGG 0.565236 5.2:-25303494 None:intergenic
TGAAGGTAAAAGCAGGGAGA+AGG 0.572430 5.2:-25303903 None:intergenic
TCCAATCTGATTTAACTGAA+AGG 0.573414 5.2:-25304651 None:intergenic
GCAGTTCAATTCCTAGAAGT+GGG 0.574665 5.2:+25303448 MS.gene68280:CDS
AGCATAGCAGATGCTAGTGT+GGG 0.575963 5.2:-25303877 None:intergenic
AAGCATAGCAGATGCTAGTG+TGG 0.579129 5.2:-25303878 None:intergenic
ATGGTCATTGCACTTGGCAT+GGG 0.582373 5.2:+25305868 MS.gene68280:CDS
GGACAATATACAAAACAGAA+AGG 0.582580 5.2:-25304711 None:intergenic
GTCAACCAAAATAGGTGCCT+AGG 0.585021 5.2:+25306176 MS.gene68280:CDS
CAAGTATGAAGGTAAAAGCA+GGG 0.587024 5.2:-25303909 None:intergenic
TCTCAGACCTGATAGGGAGT+TGG 0.589811 5.2:+25305084 MS.gene68280:CDS
TATGTTCAACCCATTAGGAA+TGG 0.601626 5.2:+25305849 MS.gene68280:CDS
TGAGGAGTGTTGTATACACA+TGG 0.602238 5.2:+25305794 MS.gene68280:CDS
CATAACTGCATAAAATCCAA+TGG 0.603922 5.2:-25306097 None:intergenic
AGCAAGTGTAACAGCAACAA+TGG 0.605117 5.2:+25303423 MS.gene68280:CDS
TATGTGGGCACAAGCTCAAG+AGG 0.606878 5.2:+25306116 MS.gene68280:CDS
GGATTATCCTGAAGAGCTAG+TGG 0.609543 5.2:+25304979 MS.gene68280:CDS
TCATTTATAGGCAATTTGTG+TGG 0.623525 5.2:+25305765 MS.gene68280:intron
ATTGTAGCTCTCATTGCAGA+GGG 0.632720 5.2:+25305043 MS.gene68280:CDS
AACAAGCATTTGTTGCAGCA+TGG 0.633651 5.2:+25305003 MS.gene68280:CDS
AATTGTAGCTCTCATTGCAG+AGG 0.661606 5.2:+25305042 MS.gene68280:CDS
CAATTTGTGTGGTATCAATG+AGG 0.677875 5.2:+25305776 MS.gene68280:CDS
AGCTAAAATAATTGGCACAG+TGG 0.680195 5.2:+25304531 MS.gene68280:CDS
AAGCATTTGTTGCAGCATGG+TGG 0.684295 5.2:+25305006 MS.gene68280:CDS
TTTGACAACGATAGAGCCGG+AGG 0.693541 5.2:-25303708 None:intergenic
GTTCAATTCCTAGAAGTGGG+TGG 0.702602 5.2:+25303451 MS.gene68280:CDS
GAGGAGTGTTGTATACACAT+GGG 0.704060 5.2:+25305795 MS.gene68280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAACAGAAAAATAATA+TGG + chr5.2:25304448-25304467 MS.gene68280:intron 10.0%
!! AAAAATTCTACATAAAATTG+AGG - chr5.2:25303617-25303636 None:intergenic 15.0%
!! TATGAATTTAGTTGTATAAA+AGG + chr5.2:25303750-25303769 MS.gene68280:intron 15.0%
!!! AGAGATTGATATTTTTAAAA+CGG + chr5.2:25304872-25304891 MS.gene68280:intron 15.0%
!!! GATATATTTCAATCATTTTT+TGG + chr5.2:25304382-25304401 MS.gene68280:intron 15.0%
!!! TACAATATTTTTTATACAAG+AGG - chr5.2:25305238-25305257 None:intergenic 15.0%
!!! TCAAAGTAAATATTTTTGTA+TGG + chr5.2:25303726-25303745 MS.gene68280:intron 15.0%
!!! TTAGATTATTTCTAACAAAT+TGG - chr5.2:25305993-25306012 None:intergenic 15.0%
!! AGGAAATTTATGTGAAAATT+TGG + chr5.2:25303770-25303789 MS.gene68280:intron 20.0%
!! GAATTATAATTTAACCAATG+TGG + chr5.2:25305726-25305745 MS.gene68280:intron 20.0%
!! GATATAACTATATGTAAACA+TGG + chr5.2:25304800-25304819 MS.gene68280:intron 20.0%
!! GTAAAAAATTTAATGTCACT+CGG + chr5.2:25304069-25304088 MS.gene68280:intron 20.0%
!! TAACTGTGACATTATATAAA+GGG + chr5.2:25304572-25304591 MS.gene68280:CDS 20.0%
!! TTAACTGTGACATTATATAA+AGG + chr5.2:25304571-25304590 MS.gene68280:CDS 20.0%
!! TTTCAAAATATAGATATTGG+AGG + chr5.2:25304616-25304635 MS.gene68280:CDS 20.0%
!!! ATGTCATTAATGGTTTTATA+CGG + chr5.2:25305352-25305371 MS.gene68280:intron 20.0%
!!! ATTTTTCTGTTTTTTTTGCA+AGG - chr5.2:25304444-25304463 None:intergenic 20.0%
!!! CATATTTTACATCAATAACA+TGG - chr5.2:25305536-25305555 None:intergenic 20.0%
!!! TCCAATATCTATATTTTGAA+AGG - chr5.2:25304617-25304636 None:intergenic 20.0%
! AAAAATACTCATTCCATCAT+TGG - chr5.2:25303500-25303519 None:intergenic 25.0%
! AATGACATTGCATAGAAAAA+GGG - chr5.2:25305340-25305359 None:intergenic 25.0%
! ACATGATAAGATATGATTAG+AGG - chr5.2:25305379-25305398 None:intergenic 25.0%
! ATATACAGACTTGGATTATA+AGG + chr5.2:25304957-25304976 MS.gene68280:intron 25.0%
! ATTCTCTAACAAAGATTAAC+AGG - chr5.2:25305561-25305580 None:intergenic 25.0%
! CATAAAATTGAGGATGAAAT+TGG - chr5.2:25303607-25303626 None:intergenic 25.0%
! CGTATAATACACAAAATGAT+AGG + chr5.2:25305268-25305287 MS.gene68280:intron 25.0%
! GCCTTTCAAAATATAGATAT+TGG + chr5.2:25304613-25304632 MS.gene68280:CDS 25.0%
! TAATGACATTGCATAGAAAA+AGG - chr5.2:25305341-25305360 None:intergenic 25.0%
! TATACAGACTTGGATTATAA+GGG + chr5.2:25304958-25304977 MS.gene68280:intron 25.0%
! TCTACATATATATACAGACT+TGG + chr5.2:25304948-25304967 MS.gene68280:intron 25.0%
! TGAAATTAAAGCAAGTATGA+AGG - chr5.2:25303923-25303942 None:intergenic 25.0%
! TTCGAAAAGATTTATTTACC+TGG - chr5.2:25304735-25304754 None:intergenic 25.0%
! TTGAACATAGCTACATATAT+TGG - chr5.2:25305838-25305857 None:intergenic 25.0%
! TTTCTATGCAATGTCATTAA+TGG + chr5.2:25305342-25305361 MS.gene68280:intron 25.0%
!! AAAGATTCCTTTTCAAAAAG+GGG - chr5.2:25304273-25304292 None:intergenic 25.0%
!! AAGATTTTAAATCGTAGTTG+CGG + chr5.2:25304767-25304786 MS.gene68280:intron 25.0%
!! ACAAAGATTCCTTTTCAAAA+AGG - chr5.2:25304275-25304294 None:intergenic 25.0%
!! AGCAAAATCATCAATTTTTC+AGG - chr5.2:25304244-25304263 None:intergenic 25.0%
!! ATAAAATTTGTTCATACCTG+AGG - chr5.2:25303651-25303670 None:intergenic 25.0%
!! CAAAGATTCCTTTTCAAAAA+GGG - chr5.2:25304274-25304293 None:intergenic 25.0%
!! GCAAAATCATCAATTTTTCA+GGG - chr5.2:25304243-25304262 None:intergenic 25.0%
!! TCATACTTGCTTTAATTTCA+AGG + chr5.2:25303923-25303942 MS.gene68280:CDS 25.0%
!! TCTTTTTCTGTGGTAAAAAA+AGG - chr5.2:25303575-25303594 None:intergenic 25.0%
!! TTTGTGGTTGTTTCATTTAT+AGG + chr5.2:25305753-25305772 MS.gene68280:intron 25.0%
!! TTTTTGCAAGGATTAAAGAA+GGG - chr5.2:25304432-25304451 None:intergenic 25.0%
!!! ATGCATCACAACTTTAAAAT+CGG + chr5.2:25305696-25305715 MS.gene68280:intron 25.0%
!!! TTTTATACCCCTTTTTGAAA+AGG + chr5.2:25304263-25304282 MS.gene68280:intron 25.0%
!!! TTTTTTGCAAGGATTAAAGA+AGG - chr5.2:25304433-25304452 None:intergenic 25.0%
AAAATTGAGGATGAAATTGG+AGG - chr5.2:25303604-25303623 None:intergenic 30.0%
AAAGGAAACATAGAGCAAAA+AGG - chr5.2:25303543-25303562 None:intergenic 30.0%
AATATAGATATTGGAGGAAG+TGG + chr5.2:25304622-25304641 MS.gene68280:CDS 30.0%
ACCTTTCAGTTAAATCAGAT+TGG + chr5.2:25304650-25304669 MS.gene68280:CDS 30.0%
CATAACTGCATAAAATCCAA+TGG - chr5.2:25306100-25306119 None:intergenic 30.0%
CATATATTGGTCCTTTCTTA+CGG - chr5.2:25305825-25305844 None:intergenic 30.0%
CTAGACCTATATGTGAATAA+AGG + chr5.2:25305650-25305669 MS.gene68280:intron 30.0%
CTTTATTCACATATAGGTCT+AGG - chr5.2:25305652-25305671 None:intergenic 30.0%
GAAAATTGTGTTCAATGTGA+AGG + chr5.2:25304100-25304119 MS.gene68280:intron 30.0%
GGACAATATACAAAACAGAA+AGG - chr5.2:25304714-25304733 None:intergenic 30.0%
GTTAAATCAGATTGGATAGT+TGG + chr5.2:25304658-25304677 MS.gene68280:CDS 30.0%
TAAATTCCCAATTTAGTGCA+AGG - chr5.2:25304913-25304932 None:intergenic 30.0%
TCATTTATAGGCAATTTGTG+TGG + chr5.2:25305765-25305784 MS.gene68280:intron 30.0%
TCCAATCTGATTTAACTGAA+AGG - chr5.2:25304654-25304673 None:intergenic 30.0%
TGATGCCTTTATTCACATAT+AGG - chr5.2:25305658-25305677 None:intergenic 30.0%
TTGTATGCAATGTCATTGAA+AGG + chr5.2:25305187-25305206 MS.gene68280:intron 30.0%
! AAAAAAAGGTGCATGGTAAA+AGG - chr5.2:25303561-25303580 None:intergenic 30.0%
! TGGATTTTATGCAGTTATGT+GGG + chr5.2:25306101-25306120 MS.gene68280:CDS 30.0%
! TTCTGTTTTGTATATTGTCC+AGG + chr5.2:25304714-25304733 MS.gene68280:CDS 30.0%
! TTGGATTTTATGCAGTTATG+TGG + chr5.2:25306100-25306119 MS.gene68280:CDS 30.0%
! TTTTCCAGTAGAACTACAAA+TGG - chr5.2:25304340-25304359 None:intergenic 30.0%
!! GTGCAGATTTTAACGAATAT+TGG + chr5.2:25303838-25303857 MS.gene68280:CDS 30.0%
AAGTCATAGATGTTAGTGGA+AGG + chr5.2:25304014-25304033 MS.gene68280:intron 35.0%
AATACTCATTCCATCATTGG+TGG - chr5.2:25303497-25303516 None:intergenic 35.0%
ACCAAATACAATTGCCACAT+CGG - chr5.2:25304051-25304070 None:intergenic 35.0%
ACTTATTGTTGCAGCATGAT+TGG + chr5.2:25306060-25306079 MS.gene68280:intron 35.0%
AGCAGCCAAGCTAAAATAAT+TGG + chr5.2:25304523-25304542 MS.gene68280:CDS 35.0%
AGCTAAAATAATTGGCACAG+TGG + chr5.2:25304531-25304550 MS.gene68280:CDS 35.0%
CAAGTATGAAGGTAAAAGCA+GGG - chr5.2:25303912-25303931 None:intergenic 35.0%
CAATGTCATTGAAAGGTCAA+TGG + chr5.2:25305194-25305213 MS.gene68280:intron 35.0%
CAATTTGTGTGGTATCAATG+AGG + chr5.2:25305776-25305795 MS.gene68280:CDS 35.0%
CACTTACCTTGCACTAAATT+GGG + chr5.2:25304904-25304923 MS.gene68280:intron 35.0%
CAGAGGGAAATTCAAAAGTT+TGG + chr5.2:25305059-25305078 MS.gene68280:CDS 35.0%
TATGTTCAACCCATTAGGAA+TGG + chr5.2:25305849-25305868 MS.gene68280:CDS 35.0%
TCCACTAACATCTATGACTT+GGG - chr5.2:25304014-25304033 None:intergenic 35.0%
TTCCACTAACATCTATGACT+TGG - chr5.2:25304015-25304034 None:intergenic 35.0%
TTTAAATCGTAGTTGCGGTT+GGG + chr5.2:25304772-25304791 MS.gene68280:intron 35.0%
! ATTTTCTCCTTCAAATCCTC+CGG + chr5.2:25303692-25303711 MS.gene68280:CDS 35.0%
! GGCATGGGTGTAATATTTTT+GGG + chr5.2:25305883-25305902 MS.gene68280:CDS 35.0%
! TATGCCATTTGTAGTTCTAC+TGG + chr5.2:25304333-25304352 MS.gene68280:intron 35.0%
! TGGCATGGGTGTAATATTTT+TGG + chr5.2:25305882-25305901 MS.gene68280:CDS 35.0%
! TTGTAAAACCAGCTTTTAGC+AGG + chr5.2:25305581-25305600 MS.gene68280:intron 35.0%
! TTTTAAATCGTAGTTGCGGT+TGG + chr5.2:25304771-25304790 MS.gene68280:intron 35.0%
! TTTTTCTTCTTAGTTGCCTC+AGG + chr5.2:25303632-25303651 MS.gene68280:intron 35.0%
!! TGAAAGGCGTTACTAATCAA+TGG - chr5.2:25304601-25304620 None:intergenic 35.0%
!!! CTATTTTGGTTGACAACAGA+GGG - chr5.2:25306170-25306189 None:intergenic 35.0%
!!! CTGTGCCAATTATTTTAGCT+TGG - chr5.2:25304531-25304550 None:intergenic 35.0%
!!! TATTTTGGTTGACAACAGAG+GGG - chr5.2:25306169-25306188 None:intergenic 35.0%
!!! TTATTTTAGCTTGGCTGCTA+TGG - chr5.2:25304522-25304541 None:intergenic 35.0%
AAGCTCTCACACATAGAGTT+TGG - chr5.2:25305302-25305321 None:intergenic 40.0%
AATTGTAGCTCTCATTGCAG+AGG + chr5.2:25305042-25305061 MS.gene68280:CDS 40.0%
ACCCAAGTCATAGATGTTAG+TGG + chr5.2:25304010-25304029 MS.gene68280:intron 40.0%
AGCAAGTGTAACAGCAACAA+TGG + chr5.2:25303423-25303442 MS.gene68280:CDS 40.0%
AGCTCTCACACATAGAGTTT+GGG - chr5.2:25305301-25305320 None:intergenic 40.0%
AGGTCTAATCATATCCGATG+TGG + chr5.2:25304034-25304053 MS.gene68280:intron 40.0%
AGTGCAATGACCATTCCTAA+TGG - chr5.2:25305862-25305881 None:intergenic 40.0%
ATCAAATCAGCCACCAATGA+TGG + chr5.2:25303484-25303503 MS.gene68280:CDS 40.0%
ATTGAGGATGAAATTGGAGG+AGG - chr5.2:25303601-25303620 None:intergenic 40.0%
ATTGTAGCTCTCATTGCAGA+GGG + chr5.2:25305043-25305062 MS.gene68280:CDS 40.0%
CACACATAGAGTTTGGGAAA+GGG - chr5.2:25305295-25305314 None:intergenic 40.0%
CATTGAAAGGTCAATGGTTC+AGG + chr5.2:25305200-25305219 MS.gene68280:intron 40.0%
CCTCTGTTGTCAACCAAAAT+AGG + chr5.2:25306168-25306187 MS.gene68280:CDS 40.0%
GAGACAGTCTTTATCTTGGA+AGG + chr5.2:25305905-25305924 MS.gene68280:CDS 40.0%
GCAAGTATGAAGGTAAAAGC+AGG - chr5.2:25303913-25303932 None:intergenic 40.0%
GCACTTACCTTGCACTAAAT+TGG + chr5.2:25304903-25304922 MS.gene68280:intron 40.0%
GCAGTTCAATTCCTAGAAGT+GGG + chr5.2:25303448-25303467 MS.gene68280:CDS 40.0%
GTAGCTATGTTCAACCCATT+AGG + chr5.2:25305844-25305863 MS.gene68280:CDS 40.0%
GTGCAATGACCATTCCTAAT+GGG - chr5.2:25305861-25305880 None:intergenic 40.0%
TAACCAATGTGGAGACTTTG+TGG + chr5.2:25305737-25305756 MS.gene68280:intron 40.0%
TACTTTGACAACGATAGAGC+CGG - chr5.2:25303714-25303733 None:intergenic 40.0%
TCACACATAGAGTTTGGGAA+AGG - chr5.2:25305296-25305315 None:intergenic 40.0%
TCCGATGTGGCAATTGTATT+TGG + chr5.2:25304047-25304066 MS.gene68280:intron 40.0%
TGAACACAATGTGCACTTTC+AGG + chr5.2:25304473-25304492 MS.gene68280:intron 40.0%
TGCAGTTCAATTCCTAGAAG+TGG + chr5.2:25303447-25303466 MS.gene68280:CDS 40.0%
TGCATAGAAAAAGGGCAACA+TGG - chr5.2:25305332-25305351 None:intergenic 40.0%
TTAGGAATGGTCATTGCACT+TGG + chr5.2:25305862-25305881 MS.gene68280:CDS 40.0%
TTGGATTCTCAGACCTGATA+GGG + chr5.2:25305078-25305097 MS.gene68280:CDS 40.0%
TTGGGAGACAGTCTTTATCT+TGG + chr5.2:25305901-25305920 MS.gene68280:CDS 40.0%
TTTGGATTCTCAGACCTGAT+AGG + chr5.2:25305077-25305096 MS.gene68280:CDS 40.0%
! AACAAGCATTTGTTGCAGCA+TGG + chr5.2:25305003-25305022 MS.gene68280:CDS 40.0%
! CTGTGGTAAAAAAAGGTGCA+TGG - chr5.2:25303568-25303587 None:intergenic 40.0%
! TGCAGATTTTTGTGTGAACC+AGG + chr5.2:25304827-25304846 MS.gene68280:intron 40.0%
!! GAGGAGTGTTGTATACACAT+GGG + chr5.2:25305795-25305814 MS.gene68280:CDS 40.0%
!! TGAGGAGTGTTGTATACACA+TGG + chr5.2:25305794-25305813 MS.gene68280:CDS 40.0%
!!! ATTTTGGTTGACAACAGAGG+GGG - chr5.2:25306168-25306187 None:intergenic 40.0%
!!! CCTATTTTGGTTGACAACAG+AGG - chr5.2:25306171-25306190 None:intergenic 40.0%
AAAGAGCTCCTGCTAAAAGC+TGG - chr5.2:25305592-25305611 None:intergenic 45.0%
AAGCATAGCAGATGCTAGTG+TGG - chr5.2:25303881-25303900 None:intergenic 45.0%
AATGGTCATTGCACTTGGCA+TGG + chr5.2:25305867-25305886 MS.gene68280:CDS 45.0%
ACATGGGCATTCCGTAAGAA+AGG + chr5.2:25305811-25305830 MS.gene68280:CDS 45.0%
AGCATAGCAGATGCTAGTGT+GGG - chr5.2:25303880-25303899 None:intergenic 45.0%
ATGGTCATTGCACTTGGCAT+GGG + chr5.2:25305868-25305887 MS.gene68280:CDS 45.0%
CAACCACAAAGTCTCCACAT+TGG - chr5.2:25305743-25305762 None:intergenic 45.0%
CACAATGTGCACTTTCAGGA+TGG + chr5.2:25304477-25304496 MS.gene68280:intron 45.0%
GATTGATCTTGAGCTACCTG+TGG + chr5.2:25303800-25303819 MS.gene68280:intron 45.0%
GGAGCTGCTATAATAGCCAT+TGG + chr5.2:25306081-25306100 MS.gene68280:CDS 45.0%
GGATTATCCTGAAGAGCTAG+TGG + chr5.2:25304979-25304998 MS.gene68280:CDS 45.0%
GTTCAATTCCTAGAAGTGGG+TGG + chr5.2:25303451-25303470 MS.gene68280:CDS 45.0%
TGAAGGTAAAAGCAGGGAGA+AGG - chr5.2:25303906-25303925 None:intergenic 45.0%
! AAGCATTTGTTGCAGCATGG+TGG + chr5.2:25305006-25305025 MS.gene68280:CDS 45.0%
! CTTGTTACCACTAGCTCTTC+AGG - chr5.2:25304989-25305008 None:intergenic 45.0%
! GAGGAGGAGATCTTTTTCTG+TGG - chr5.2:25303585-25303604 None:intergenic 45.0%
!! AATAAATATTATTATGTATA+TGG + chr5.2:25304166-25304185 MS.gene68280:intron 5.0%
!! TAAAAAAAAAAAAAACAAAT+TGG - chr5.2:25305959-25305978 None:intergenic 5.0%
!!! ATTTGTTTTTTTTTTTTTTA+AGG + chr5.2:25305959-25305978 MS.gene68280:intron 5.0%
AAGGTCAATGGTTCAGGTCG+TGG + chr5.2:25305206-25305225 MS.gene68280:intron 50.0%
AATCTCTCTGCAGTTGCACG+TGG - chr5.2:25304859-25304878 None:intergenic 50.0%
ACAGCTACCAACTCCCTATC+AGG - chr5.2:25305094-25305113 None:intergenic 50.0%
CACAGTTAATGCCCCTGCAA+TGG - chr5.2:25304560-25304579 None:intergenic 50.0%
GAGTGTTACCACCCACTTCT+AGG - chr5.2:25303462-25303481 None:intergenic 50.0%
GATAGAGCCGGAGGATTTGA+AGG - chr5.2:25303702-25303721 None:intergenic 50.0%
TATGTGGGCACAAGCTCAAG+AGG + chr5.2:25306116-25306135 MS.gene68280:CDS 50.0%
TCTCAGACCTGATAGGGAGT+TGG + chr5.2:25305084-25305103 MS.gene68280:CDS 50.0%
TTTGACAACGATAGAGCCGG+AGG - chr5.2:25303711-25303730 None:intergenic 50.0%
CACAGTGGTCTCCATTGCAG+GGG + chr5.2:25304546-25304565 MS.gene68280:CDS 55.0%
CTGCAGTACTGCACAACCAC+AGG - chr5.2:25303819-25303838 None:intergenic 55.0%
GCACAGTGGTCTCCATTGCA+GGG + chr5.2:25304545-25304564 MS.gene68280:CDS 55.0%
!! AGTTGCACGTGGTGGATACC+TGG - chr5.2:25304848-25304867 None:intergenic 55.0%
CTCTCTGCAGTTGCACGTGG+TGG - chr5.2:25304856-25304875 None:intergenic 60.0%
GGCACAGTGGTCTCCATTGC+AGG + chr5.2:25304544-25304563 MS.gene68280:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 25303409 25306197 25303409 ID=MS.gene68280
chr5.2 mRNA 25303409 25306197 25303409 ID=MS.gene68280.t1;Parent=MS.gene68280
chr5.2 exon 25303409 25303511 25303409 ID=MS.gene68280.t1.exon1;Parent=MS.gene68280.t1
chr5.2 CDS 25303409 25303511 25303409 ID=cds.MS.gene68280.t1;Parent=MS.gene68280.t1
chr5.2 exon 25303679 25303730 25303679 ID=MS.gene68280.t1.exon2;Parent=MS.gene68280.t1
chr5.2 CDS 25303679 25303730 25303679 ID=cds.MS.gene68280.t1;Parent=MS.gene68280.t1
chr5.2 exon 25303831 25303944 25303831 ID=MS.gene68280.t1.exon3;Parent=MS.gene68280.t1
chr5.2 CDS 25303831 25303944 25303831 ID=cds.MS.gene68280.t1;Parent=MS.gene68280.t1
chr5.2 exon 25304495 25304735 25304495 ID=MS.gene68280.t1.exon4;Parent=MS.gene68280.t1
chr5.2 CDS 25304495 25304735 25304495 ID=cds.MS.gene68280.t1;Parent=MS.gene68280.t1
chr5.2 exon 25304965 25305123 25304965 ID=MS.gene68280.t1.exon5;Parent=MS.gene68280.t1
chr5.2 CDS 25304965 25305123 25304965 ID=cds.MS.gene68280.t1;Parent=MS.gene68280.t1
chr5.2 exon 25305775 25305926 25305775 ID=MS.gene68280.t1.exon6;Parent=MS.gene68280.t1
chr5.2 CDS 25305775 25305926 25305775 ID=cds.MS.gene68280.t1;Parent=MS.gene68280.t1
chr5.2 exon 25306074 25306197 25306074 ID=MS.gene68280.t1.exon7;Parent=MS.gene68280.t1
chr5.2 CDS 25306074 25306197 25306074 ID=cds.MS.gene68280.t1;Parent=MS.gene68280.t1
Gene Sequence

>MS.gene68280

ATGGTGATCGAAGGAGCAAGTGTAACAGCAACAATGGTTGCAGTTCAATTCCTAGAAGTGGGTGGTAACACTCTGATCAAATCAGCCACCAATGATGGAATGAGTATTTTTGTTTTCACTTTTTACTCAAACCTTTTTGCTCTATGTTTCCTTTTACCATGCACCTTTTTTTACCACAGAAAAAGATCTCCTCCTCCAATTTCATCCTCAATTTTATGTAGAATTTTTCTTCTTAGTTGCCTCAGGTATGAACAAATTTTATGTAATCAGCTGTTATGTTAGTATTTTCTCCTTCAAATCCTCCGGCTCTATCGTTGTCAAAGTAAATATTTTTGTATGGATATGAATTTAGTTGTATAAAAGGAAATTTATGTGAAAATTTGGAATGTTTGATTGATCTTGAGCTACCTGTGGTTGTGCAGTACTGCAGTGCAGATTTTAACGAATATTGGAATTGAATGTAGCTCTCCCACACTAGCATCTGCTATGCTTGACCTTCTCCCTGCTTTTACCTTCATACTTGCTTTAATTTCAAGGTTTGACTTATTTTATTTATCTTCTATTTACATGTAATTTACGAGTTGTGAAATTTTGAAGTTAAACCCAAGTCATAGATGTTAGTGGAAGGTCTAATCATATCCGATGTGGCAATTGTATTTGGTAAAAAATTTAATGTCACTCGGATGAAAAAGAAAATTGTGTTCAATGTGAAGGACATTCAATAAAAGTTAGATGTGTAAATTATTTAACTTCAATTAATAAATATTATTATGTATATGGAAATAAAAGCATAAATAATAAATGAAAAAAATTATTTTATATATTTTTAGTCCCTGAAAAATTGATGATTTTGCTTTTATACCCCTTTTTGAAAAGGAATCTTTGTATACAAATTTTAAAATATAGCATTTTTTGTTTCAAATATATGCCATTTGTAGTTCTACTGGAAAATATCAAAGAGTGACTTAAAAATGATATATTTCAATCATTTTTTGGTCAAGTACAAACATAATTTAATTACCCTTCTTTAATCCTTGCAAAAAAAACAGAAAAATAATATGGCATGAACACAATGTGCACTTTCAGGATGGAAAATCTAAATCTGAAACACCATAGCAGCCAAGCTAAAATAATTGGCACAGTGGTCTCCATTGCAGGGGCATTAACTGTGACATTATATAAAGGGATACCATTGATTAGTAACGCCTTTCAAAATATAGATATTGGAGGAAGTGGAATTCACCTTTCAGTTAAATCAGATTGGATAGTTGGTGCTTTTCTTCTTGCAACTGCTAGCTTTTGCCTTTCTGTTTTGTATATTGTCCAGGTAAATAAATCTTTTCGAATATTGCGCAACAAAGATTTTAAATCGTAGTTGCGGTTGGGAGTTAGATATAACTATATGTAAACATGGTTGATGCAGATTTTTGTGTGAACCAGGTATCCACCACGTGCAACTGCAGAGAGATTGATATTTTTAAAACGGCATACATTGCACTTACCTTGCACTAAATTGGGAATTTATTTAATTTTTTTTTTTCTACATATATATACAGACTTGGATTATAAGGGATTATCCTGAAGAGCTAGTGGTAACAAGCATTTGTTGCAGCATGGTGGTAATTCTATCTGCAATTGTAGCTCTCATTGCAGAGGGAAATTCAAAAGTTTGGATTCTCAGACCTGATAGGGAGTTGGTAGCTGTGTGTTATTCAGTAAGTACAAACTTTATTGTTTTTAAGAAAATTAAGAACATATTAAAATAAAATAAATTTAATTTGTATGCAATGTCATTGAAAGGTCAATGGTTCAGGTCGTGGAATCAGCCTCTTGTATAAAAAATATTGTAAGATAGATTGCGTATAATACACAAAATGATAGGACCCTTTCCCAAACTCTATGTGTGAGAGCTTTAGCGCACCATGTTGCCCTTTTTCTATGCAATGTCATTAATGGTTTTATACGGACCTCTAATCATATCTTATCATGTTGATATTTATGAAGATATATGAGAATATAATGAACATATGTAATTTGATTTGATGCATGTATTAAATAGTTGTACATTGTCGTTGCATAGATATTAATCTCTTAAGAATAAAGTGTTTTTCTTTTTGTTTTTAACCATGTTATTGATGTAAAATATGAACCTGTTAATCTTTGTTAGAGAATTTGTAAAACCAGCTTTTAGCAGGAGCTCTTTTTACAACAACATTTTTTTTTCATGCACAATATTTGAACCTAGACCTATATGTGAATAAAGGCATCACAACTTATTTTTTGACAAATGCATCACAACTTTAAAATCGGTATTTATGAATTATAATTTAACCAATGTGGAGACTTTGTGGTTGTTTCATTTATAGGCAATTTGTGTGGTATCAATGAGGAGTGTTGTATACACATGGGCATTCCGTAAGAAAGGACCAATATATGTAGCTATGTTCAACCCATTAGGAATGGTCATTGCACTTGGCATGGGTGTAATATTTTTGGGAGACAGTCTTTATCTTGGAAGGTAAATAAATACATTTAATTTAAGAACAACCAATTTGTTTTTTTTTTTTTTAAGGAAGAACAACCAATTTGTTAGAAATAATCTAAATGATGTATTAATTCAATACAAGCATTTTCATTTTAAAATTTGTTTTACTTATTGTTGCAGCATGATTGGAGCTGCTATAATAGCCATTGGATTTTATGCAGTTATGTGGGCACAAGCTCAAGAGGAAAACACAACATGTGAAAATAAATTTCCCCCTCTGTTGTCAACCAAAATAGGTGCCTAG
Protein sequence

>MS.gene68280.t1

MVIEGASVTATMVAVQFLEVGGNTLIKSATNDGMTVMLVFSPSNPPALSLSNTAVQILTNIGIECSSPTLASAMLDLLPAFTFILALISRMENLNLKHHSSQAKIIGTVVSIAGALTVTLYKGIPLISNAFQNIDIGGSGIHLSVKSDWIVGAFLLATASFCLSVLYIVQTWIIRDYPEELVVTSICCSMVVILSAIVALIAEGNSKVWILRPDRELVAVCYSAICVVSMRSVVYTWAFRKKGPIYVAMFNPLGMVIALGMGVIFLGDSLYLGSMIGAAIIAIGFYAVMWAQAQEENTTCENKFPPLLSTKIGA