AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68531


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68531.t1 MTR_3g056730 66.216 592 87 6 1 537 1 534 0.0 687
MS.gene68531.t1 MTR_3g057330 55.975 159 44 4 1 133 1 159 1.64e-30 117
MS.gene68531.t1 MTR_3g057160 53.521 142 45 2 12 132 16 157 1.46e-25 105
MS.gene68531.t1 MTR_3g057030 50.435 115 37 2 12 115 24 129 3.29e-19 84.7
MS.gene68531.t1 MTR_3g056755 54.455 101 35 1 26 115 5 105 1.88e-16 77.4
MS.gene68531.t1 MTR_8g016620 54.455 101 35 1 26 115 2 102 1.94e-16 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 177 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGGAGTAATGGGGAATT+AGG 0.182122 3.4:-54197328 MS.gene68531:CDS
AAGAGGTAAAACCATCTAAT+TGG 0.236209 3.4:+54194327 None:intergenic
TCATAACATTCCCATCTTCT+AGG 0.237537 3.4:+54195224 None:intergenic
GCACCGGTCCAATACCATTT+TGG 0.247957 3.4:+54194295 None:intergenic
TGAGGAGTTGGTGAAGTTTA+GGG 0.269745 3.4:-54195266 MS.gene68531:CDS
AGGTGAAAACGTTGAGGTTT+TGG 0.277673 3.4:-54196578 MS.gene68531:CDS
AAGAATCAATTTAAGAGCTT+TGG 0.281851 3.4:-54195340 MS.gene68531:CDS
TGTTGGAAAGGTCGAGGTTT+TGG 0.292214 3.4:-54196254 MS.gene68531:CDS
GGCTTGTGCTGTTGCGGAAC+TGG 0.296718 3.4:-54196278 MS.gene68531:CDS
AGAATAGAGGGGTTGGTAAT+GGG 0.305592 3.4:-54196303 MS.gene68531:CDS
TAAAGGAAGAAAGGAGTAAT+GGG 0.312608 3.4:-54197336 MS.gene68531:CDS
GTGAGGAGTTGGTGAAGTTT+AGG 0.314237 3.4:-54195267 MS.gene68531:CDS
AACCATCTAATTGGAGCTTC+AGG 0.320679 3.4:+54194336 None:intergenic
GCTAGGGAAGAAAAGTTAAA+AGG 0.323691 3.4:-54197457 MS.gene68531:CDS
AAAGATGCTCTAGTTTCTTC+TGG 0.328325 3.4:-54196196 MS.gene68531:intron
AAAGATGGTCAAGGTTCTTC+AGG 0.328828 3.4:-54195052 MS.gene68531:intron
AAAGATGGCGTAGGTGCTTC+AGG 0.332452 3.4:-54197157 MS.gene68531:intron
CTCTTCAAACCTAACCAAAA+TGG 0.334109 3.4:-54194309 MS.gene68531:CDS
AGGAAATTGAAGAGAAGATT+AGG 0.342554 3.4:-54195375 MS.gene68531:CDS
TGGCCAAGACTCTAGTGGTT+AGG 0.349610 3.4:-54196558 MS.gene68531:CDS
TAGACGAGACGCTAGTGGTT+AGG 0.352615 3.4:-54196828 MS.gene68531:CDS
CCTTGACCATCTTTCTTGCT+TGG 0.353964 3.4:+54195061 None:intergenic
GAATGTTATGAAAGCTGAAT+TGG 0.370397 3.4:-54195212 MS.gene68531:CDS
AAAGGAGTAATGGGGAATTA+GGG 0.373435 3.4:-54197327 MS.gene68531:CDS
GAAATTTGATATGTTAATGT+TGG 0.381296 3.4:-54197392 MS.gene68531:CDS
GAATAATCAATTCAACGGTT+GGG 0.385433 3.4:-54196485 MS.gene68531:CDS
GGGGAGAACGGTAATGGGCT+TGG 0.387547 3.4:-54196391 MS.gene68531:CDS
CACCTGAAGCTCCAATTAGA+TGG 0.391146 3.4:-54194338 MS.gene68531:CDS
CTTTGCTTCCCTGTCCCCTA+AGG 0.392415 3.4:+54195405 None:intergenic
TGGAAGGTGTAGTGGTGAAG+TGG 0.405749 3.4:-54197302 MS.gene68531:CDS
TGATATGTTAATGTTGGAAA+AGG 0.406052 3.4:-54197386 MS.gene68531:CDS
AAGAGGAGCTCATGAAGGTT+GGG 0.408722 3.4:-54196411 MS.gene68531:CDS
TTTGAGGTGTTGAAGAATAG+AGG 0.410883 3.4:-54196640 MS.gene68531:CDS
GAAAGGAGATTACGAAGCTT+GGG 0.410918 3.4:-54196681 MS.gene68531:CDS
TTGGTGAAGTTTAGGGAGAA+TGG 0.411192 3.4:-54195259 MS.gene68531:CDS
AAACCTAACCAAAATGGTAT+TGG 0.415009 3.4:-54194303 MS.gene68531:CDS
AAGAATAGAGGGGTTGGTAA+TGG 0.418976 3.4:-54196304 MS.gene68531:CDS
GAATAGTCGATTCAAGAGTT+GGG 0.423182 3.4:-54196755 MS.gene68531:CDS
TTTGAGGGGTTGAAGAATAG+AGG 0.425954 3.4:-54196316 MS.gene68531:CDS
GGCCAAGACTCTAGTGGTTA+GGG 0.427558 3.4:-54196557 MS.gene68531:CDS
AGTAATGGGGAATTAGGGTT+TGG 0.430269 3.4:-54197322 MS.gene68531:CDS
AGAATAATCAATTCAACGGT+TGG 0.430618 3.4:-54196486 MS.gene68531:CDS
GGAAAAGGTTAGTGTTGAAA+TGG 0.431642 3.4:-54197371 MS.gene68531:CDS
AACAGATTTGTTGGTGAACC+AGG 0.436737 3.4:-54196223 MS.gene68531:CDS
AATGTTATGAAAGCTGAATT+GGG 0.437327 3.4:-54195211 MS.gene68531:CDS
CTCCGGCTCCGCCAATCGTC+CGG 0.439929 3.4:+54197574 None:intergenic
AGAATAGTCGATTCAAGAGT+TGG 0.440860 3.4:-54196756 MS.gene68531:CDS
AGCAAACCTTGCAACAAGAT+TGG 0.440924 3.4:-54195476 MS.gene68531:CDS
TCAACAGTGAAGAGCCCTTA+GGG 0.445007 3.4:-54195420 MS.gene68531:CDS
AAGGTTGGGGAGAACGGTAA+TGG 0.446865 3.4:-54196397 MS.gene68531:CDS
CTTGAGGTGGTGAAGAATAG+TGG 0.446970 3.4:-54195172 MS.gene68531:CDS
TGAAGAGAGTAAAGGAAGAA+AGG 0.448784 3.4:-54197345 MS.gene68531:CDS
ACTAGAGCATCTTTCTTGCC+TGG 0.449381 3.4:+54196205 None:intergenic
GTAAAGGAAGAAAGGAGTAA+TGG 0.457933 3.4:-54197337 MS.gene68531:CDS
AGCTCCGAGATACGTTTATA+AGG 0.459337 3.4:-54197513 MS.gene68531:CDS
GGAAAGGAGATTACGAAGCT+TGG 0.464408 3.4:-54196682 MS.gene68531:CDS
AGGTGAAAATGTCAAGGATT+CGG 0.464930 3.4:-54195110 MS.gene68531:CDS
AAGTTTAGGGAGAATGGTAA+TGG 0.467320 3.4:-54195253 MS.gene68531:CDS
TTGAAGAAACCCTAATTGCT+AGG 0.467341 3.4:-54197474 MS.gene68531:CDS
AAAATTGACAGCGGTGTTTG+TGG 0.475932 3.4:-54194243 MS.gene68531:CDS
AAGAATAGTGGGGATGCTGA+TGG 0.478448 3.4:-54195160 MS.gene68531:CDS
GTGAAGAGCCCTTAGGGGAC+AGG 0.479138 3.4:-54195414 MS.gene68531:CDS
GTGAAGGAAAAGAGAGGGGT+TGG 0.479471 3.4:-54197193 MS.gene68531:intron
GAATAGAGGGGTTGGTAATG+GGG 0.480773 3.4:-54196302 MS.gene68531:CDS
AGACGAGACGCTAGTGGTTA+GGG 0.483500 3.4:-54196827 MS.gene68531:CDS
TTGAGGTGGTGAAGAATAGT+GGG 0.483995 3.4:-54195171 MS.gene68531:CDS
GCTGCAGTTGGGCACGGAAA+AGG 0.485830 3.4:-54196343 MS.gene68531:CDS
AGTTTAGGGAGAATGGTAAT+GGG 0.486829 3.4:-54195252 MS.gene68531:CDS
GGAAGGTGTAGTGGTGAAGT+GGG 0.491846 3.4:-54197301 MS.gene68531:CDS
AGAATAGTGGGGATGCTGAT+GGG 0.493401 3.4:-54195159 MS.gene68531:CDS
AGGTTGGGGAGAACGGTAAT+GGG 0.494688 3.4:-54196396 MS.gene68531:CDS
TTGAGGGGTTGAAGAATAGA+GGG 0.495709 3.4:-54196315 MS.gene68531:CDS
CTCATGAAGGTTGGGGAGAA+CGG 0.497507 3.4:-54196403 MS.gene68531:CDS
TTGAGGTGTTGAAGAATAGA+GGG 0.497604 3.4:-54196639 MS.gene68531:CDS
TTCCCTAACCACTAGAGTCT+TGG 0.500205 3.4:+54196555 None:intergenic
GACCGGACGATTGGCGGAGC+CGG 0.501183 3.4:-54197576 MS.gene68531:CDS
TGAAGACAGTCACGGGAGAA+AGG 0.502692 3.4:-54196438 MS.gene68531:CDS
TTTGCTTCCCTGTCCCCTAA+GGG 0.502950 3.4:+54195406 None:intergenic
GAAGAGGAGCTCATGAAGGT+TGG 0.503328 3.4:-54196412 MS.gene68531:CDS
GAATAGTGGGGATGCTGATG+GGG 0.506762 3.4:-54195158 MS.gene68531:CDS
AATGGGACTGACCTAGAAGA+TGG 0.512067 3.4:-54195235 MS.gene68531:CDS
GTTGAGGCACATAAAGTCAA+TGG 0.515823 3.4:-54195301 MS.gene68531:CDS
TTCGGCTGAAAGGAAGAGAT+TGG 0.519928 3.4:-54195092 MS.gene68531:CDS
CTGACCTTATAAACGTATCT+CGG 0.522430 3.4:+54197509 None:intergenic
AAACCCACTCATATAATGTC+AGG 0.524127 3.4:-54195451 MS.gene68531:CDS
CACGGAAAAGGAAAATTTGA+GGG 0.526168 3.4:-54196331 MS.gene68531:CDS
AATAATCAATTCAACGGTTG+GGG 0.529678 3.4:-54196484 MS.gene68531:CDS
ATCAACAGTGAAGAGCCCTT+AGG 0.531966 3.4:-54195421 MS.gene68531:CDS
AGCACGATGTTGAACCAAGC+TGG 0.533134 3.4:-54194219 MS.gene68531:CDS
TTAGGGTTTGGAAGGTGTAG+TGG 0.533992 3.4:-54197310 MS.gene68531:CDS
TTGAAAGCTGCAGTTGGGCA+CGG 0.535337 3.4:-54196349 MS.gene68531:CDS
CACATAAAGTCAATGGAGAA+TGG 0.536193 3.4:-54195294 MS.gene68531:CDS
AAGCAACTGAAGAGAAGTTG+AGG 0.536823 3.4:-54196789 MS.gene68531:CDS
CTCAATGTATCGCTCCAGCT+TGG 0.539188 3.4:+54194205 None:intergenic
GCTAACCACTCTTGAAGTCC+AGG 0.539468 3.4:-54194274 MS.gene68531:CDS
GTTTAGCCAATCTTGTTGCA+AGG 0.541391 3.4:+54195470 None:intergenic
GGAGCCGGAGTAATCTGAAC+CGG 0.541434 3.4:-54197561 MS.gene68531:CDS
GGAAGCAATGTTGAAGGCAG+TGG 0.542195 3.4:-54196536 MS.gene68531:CDS
CAATTAGGGTTTCTTCAACA+AGG 0.543284 3.4:+54197479 None:intergenic
CGAGCTCCGAGATAGTCTTC+CGG 0.546210 3.4:+54197542 None:intergenic
TGAAGAAACCCTAATTGCTA+GGG 0.547195 3.4:-54197473 MS.gene68531:CDS
ATCAATTCAACGGTTGGGGA+AGG 0.547375 3.4:-54196480 MS.gene68531:CDS
GCTGAAAGGAAGAGATTGGC+TGG 0.548763 3.4:-54195088 MS.gene68531:CDS
ATTGAGGTGAACACGGTCAC+AGG 0.549420 3.4:-54196715 MS.gene68531:CDS
TGGGGAGGCTTGTGCTGTTG+CGG 0.549478 3.4:-54196284 MS.gene68531:CDS
ATGGGGAATTAGGGTTTGGA+AGG 0.550708 3.4:-54197318 MS.gene68531:CDS
AATGGAGCTGAAGAGAGTAA+AGG 0.551886 3.4:-54197353 MS.gene68531:CDS
TGAAGAGCCCTTAGGGGACA+GGG 0.551919 3.4:-54195413 MS.gene68531:CDS
GGTTAGGGAAGCAATGTTGA+AGG 0.552460 3.4:-54196542 MS.gene68531:CDS
GAAGGCAGTGGCTGAAGAAA+AGG 0.552924 3.4:-54196524 MS.gene68531:CDS
AGAAGATTAGGTTACTGCAC+AGG 0.554303 3.4:-54195363 MS.gene68531:CDS
TGAAGTGGGGAAGAAGAGAA+AGG 0.557805 3.4:-54197287 MS.gene68531:intron
CCACTAGCGTCTCGTCTACA+CGG 0.558048 3.4:+54196833 None:intergenic
TTTGGTGAAGGAAAAGAGAG+GGG 0.558869 3.4:-54197197 MS.gene68531:intron
CAAGCTGGAGCGATACATTG+AGG 0.561013 3.4:-54194204 None:intergenic
TGAGGTGTTGAAGAATAGAG+GGG 0.561820 3.4:-54196638 MS.gene68531:CDS
GCTTGGTTTAAATGATAGAG+AGG 0.561857 3.4:-54196374 MS.gene68531:CDS
TTACCTGACATTATATGAGT+GGG 0.565461 3.4:+54195448 None:intergenic
AGAATGGTGTGGTGAGGAGT+TGG 0.567948 3.4:-54195278 MS.gene68531:CDS
AACGGTTCGAAATTGGGCCG+CGG 0.568883 3.4:+54197604 None:intergenic
AGCAACTGAAGAGAAGTTGA+GGG 0.571040 3.4:-54196788 MS.gene68531:CDS
ACTGGATGTTGGAAAGGTCG+AGG 0.571508 3.4:-54196260 MS.gene68531:CDS
AGAGGAGCTCATGAAGGTTG+GGG 0.572542 3.4:-54196410 MS.gene68531:CDS
ATGTCAAGGATTCGGCTGAA+AGG 0.573571 3.4:-54195102 MS.gene68531:CDS
GCTGTTGCGGAACTGGATGT+TGG 0.573739 3.4:-54196271 MS.gene68531:CDS
GGTGAACAGAGCAAGAAAGA+TGG 0.576411 3.4:-54197172 MS.gene68531:CDS
ATTACCTGACATTATATGAG+TGG 0.577684 3.4:+54195447 None:intergenic
CAAGAGAATAATCAATTCAA+CGG 0.578823 3.4:-54196490 MS.gene68531:CDS
TAACCAAAATGGTATTGGAC+CGG 0.579693 3.4:-54194298 MS.gene68531:CDS
CACAGGAGGAAGGCATGGAA+AGG 0.580422 3.4:-54196698 MS.gene68531:CDS
ACGGTCACAGGAGGAAGGCA+TGG 0.583130 3.4:-54196703 MS.gene68531:CDS
GGGTTGAAGAATAGAGGGGT+TGG 0.584413 3.4:-54196310 MS.gene68531:CDS
CACGGGAGAAAGGCGTGAAG+AGG 0.589443 3.4:-54196428 MS.gene68531:CDS
TAGTGGGGATGCTGATGGGG+AGG 0.590354 3.4:-54195155 MS.gene68531:CDS
GTGTTGAAGAATAGAGGGGT+TGG 0.593465 3.4:-54196634 MS.gene68531:intron
TCTGAACCGGAAGACTATCT+CGG 0.593902 3.4:-54197548 MS.gene68531:CDS
GGTGAACCAAGCAAGAAAGA+TGG 0.597959 3.4:-54195067 MS.gene68531:CDS
GGACAGGGAAGCAAAGCTGA+AGG 0.599361 3.4:-54195398 MS.gene68531:CDS
TGAGGGGTTGAAGAATAGAG+GGG 0.604683 3.4:-54196314 MS.gene68531:CDS
TGCTGCCTGGACTTCAAGAG+TGG 0.606394 3.4:+54194269 None:intergenic
ATGGGACTGACCTAGAAGAT+GGG 0.609063 3.4:-54195234 MS.gene68531:CDS
GCGTGAAGAGGAGCTCATGA+AGG 0.611699 3.4:-54196416 MS.gene68531:CDS
GAATGAAAGACACGAGCTTG+AGG 0.613350 3.4:-54195188 MS.gene68531:CDS
ACTAGAAGGTGAAAACGTTG+AGG 0.614135 3.4:-54196584 MS.gene68531:intron
TATAAACGTATCTCGGAGCT+CGG 0.614929 3.4:+54197516 None:intergenic
CCGTGTAGACGAGACGCTAG+TGG 0.616681 3.4:-54196833 MS.gene68531:CDS
GTTGAGGTGAAGACAGTCAC+GGG 0.618797 3.4:-54196445 MS.gene68531:CDS
AAAGGAAGAAAGGAGTAATG+GGG 0.619788 3.4:-54197335 MS.gene68531:CDS
GCACGGAAAAGGAAAATTTG+AGG 0.622379 3.4:-54196332 MS.gene68531:CDS
AATAGTCGATTCAAGAGTTG+GGG 0.622504 3.4:-54196754 MS.gene68531:CDS
TGAACACGGTCACAGGAGGA+AGG 0.623523 3.4:-54196708 MS.gene68531:CDS
ACTCAAAGGTGAAAATGTCA+AGG 0.630430 3.4:-54195116 MS.gene68531:CDS
ATGTTATGAAAGCTGAATTG+GGG 0.633232 3.4:-54195210 MS.gene68531:CDS
CAGGGAAGCAAAGCTGAAGG+AGG 0.633850 3.4:-54195395 MS.gene68531:CDS
TGCGGAACTGGATGTTGGAA+AGG 0.634014 3.4:-54196266 MS.gene68531:CDS
ACTTCAAGAGTGGTTAGCAC+CGG 0.635036 3.4:+54194279 None:intergenic
CAGTGGCTGAAGAAAAGGTG+AGG 0.636215 3.4:-54196519 MS.gene68531:CDS
TAGAGGGGTTGGTAATGGGG+AGG 0.638423 3.4:-54196299 MS.gene68531:CDS
CCAAGCAAGAAAGATGGTCA+AGG 0.644057 3.4:-54195061 MS.gene68531:CDS
CAGAGCAAGAAAGATGGCGT+AGG 0.646304 3.4:-54197166 MS.gene68531:CDS
TCTAATTGGAGCTTCAGGTG+TGG 0.648685 3.4:+54194341 None:intergenic
GAGGTGAACACGGTCACAGG+AGG 0.650216 3.4:-54196712 MS.gene68531:CDS
TCTTCCGGTTCAGATTACTC+CGG 0.652628 3.4:+54197557 None:intergenic
GAAGGTGTAGTGGTGAAGTG+GGG 0.652743 3.4:-54197300 MS.gene68531:CDS
TGAAAGACACGAGCTTGAGG+TGG 0.654957 3.4:-54195185 MS.gene68531:CDS
AGTGGCTGAAGAAAAGGTGA+GGG 0.661191 3.4:-54196518 MS.gene68531:CDS
CAATGGAGAATGGTGTGGTG+AGG 0.663327 3.4:-54195284 MS.gene68531:CDS
AAAGGAGATTACGAAGCTTG+GGG 0.665450 3.4:-54196680 MS.gene68531:CDS
GGTTGAGGTGAAGACAGTCA+CGG 0.672238 3.4:-54196446 MS.gene68531:CDS
CAACAGTGAAGAGCCCTTAG+GGG 0.692780 3.4:-54195419 MS.gene68531:CDS
GCTTCACGCTCATGGAACCG+CGG 0.699483 3.4:-54197621 None:intergenic
ACGGAAAAGGAAAATTTGAG+GGG 0.700748 3.4:-54196330 MS.gene68531:CDS
ATTTAATTGCAGATACTGAG+CGG 0.710150 3.4:-54195522 MS.gene68531:intron
TGTGCTGTTAGTGAACTCAA+AGG 0.715632 3.4:-54195130 MS.gene68531:CDS
AAAGTCAATGGAGAATGGTG+TGG 0.722219 3.4:-54195289 MS.gene68531:CDS
TGAGGTGGTGAAGAATAGTG+GGG 0.725161 3.4:-54195170 MS.gene68531:CDS
GCAGCAACTAAAATTGACAG+CGG 0.755781 3.4:-54194252 MS.gene68531:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAACTTATCTTTTTATAT+AGG + chr3.4:54196982-54197001 None:intergenic 10.0%
!! AATGTTAGAAATTAATCTTA+AGG - chr3.4:54197067-54197086 MS.gene68531:intron 15.0%
!! AATTAGTAGTTAAGTTATAT+TGG - chr3.4:54194906-54194925 MS.gene68531:intron 15.0%
!! ATGTTAGAAATTAATCTTAA+GGG - chr3.4:54197068-54197087 MS.gene68531:intron 15.0%
!! ATTAGTAGTTAAGTTATATT+GGG - chr3.4:54194907-54194926 MS.gene68531:intron 15.0%
!!! GTTTATCAAAATATCTTTTT+GGG + chr3.4:54197253-54197272 None:intergenic 15.0%
!!! TTTTTTATGTTTAAACCAAT+TGG - chr3.4:54194936-54194955 MS.gene68531:intron 15.0%
!! GAAAAAACTATTGAAGTTAT+GGG - chr3.4:54196866-54196885 MS.gene68531:intron 20.0%
!! GAAATTTGATATGTTAATGT+TGG - chr3.4:54194424-54194443 MS.gene68531:intron 20.0%
!! GAATGAAAAATACAAATTTG+AGG - chr3.4:54195160-54195179 MS.gene68531:CDS 20.0%
!! TATTATTGAGTATGTATGTT+TGG - chr3.4:54194786-54194805 MS.gene68531:intron 20.0%
!! TGAAAAAACTATTGAAGTTA+TGG - chr3.4:54196865-54196884 MS.gene68531:intron 20.0%
!! TGATAATTCTTCATCAAATA+CGG + chr3.4:54194861-54194880 None:intergenic 20.0%
!! TTGATGTAACTAGTAATATA+AGG - chr3.4:54196089-54196108 MS.gene68531:intron 20.0%
!!! AAAATTGGCAATATTTTACA+AGG - chr3.4:54196201-54196220 MS.gene68531:CDS 20.0%
!!! AAATTGGCAATATTTTACAA+GGG - chr3.4:54196202-54196221 MS.gene68531:CDS 20.0%
!!! GGTTTATCAAAATATCTTTT+TGG + chr3.4:54197254-54197273 None:intergenic 20.0%
!!! TTATCTTTTTATATAGGACT+AGG + chr3.4:54196976-54196995 None:intergenic 20.0%
!!! TTATGATCAAGATAATTTGT+TGG - chr3.4:54195734-54195753 MS.gene68531:intron 20.0%
! AACTTCAAATCAAACCAAAA+TGG - chr3.4:54197359-54197378 MS.gene68531:CDS 25.0%
! AAGAATCAATTTAAGAGCTT+TGG - chr3.4:54196476-54196495 MS.gene68531:CDS 25.0%
! AATAATGTGTTAGAGTATAG+TGG + chr3.4:54197099-54197118 None:intergenic 25.0%
! AATGTTATGAAAGCTGAATT+GGG - chr3.4:54196605-54196624 MS.gene68531:intron 25.0%
! ACATTAAAGAATGCATACAT+AGG + chr3.4:54195674-54195693 None:intergenic 25.0%
! AGTGAATTTGATGGAAAAAA+TGG - chr3.4:54195871-54195890 MS.gene68531:intron 25.0%
! CAAGAGAATAATCAATTCAA+CGG - chr3.4:54195326-54195345 MS.gene68531:CDS 25.0%
! CAATTAATTACTTCCAGAAT+AGG + chr3.4:54196253-54196272 None:intergenic 25.0%
! CACATTATTAGGATATTCTA+AGG - chr3.4:54197110-54197129 MS.gene68531:intron 25.0%
! CTATACTCTAACACATTATT+AGG - chr3.4:54197099-54197118 MS.gene68531:intron 25.0%
! GAGAATACTATGTAGTTTAT+TGG - chr3.4:54196031-54196050 MS.gene68531:intron 25.0%
! GATAATTCTTCATCAAATAC+GGG + chr3.4:54194860-54194879 None:intergenic 25.0%
! TGATATGTTAATGTTGGAAA+AGG - chr3.4:54194430-54194449 MS.gene68531:intron 25.0%
!! AGTAGAAATCTAAGTTTTTG+TGG - chr3.4:54196150-54196169 MS.gene68531:intron 25.0%
!! TTCTGGAAGTAATTAATTGT+TGG - chr3.4:54196254-54196273 MS.gene68531:CDS 25.0%
!!! AAGATATTTTGATAAACCAG+TGG - chr3.4:54197256-54197275 MS.gene68531:intron 25.0%
!!! AATACATGATTTTGATGTTG+AGG - chr3.4:54196499-54196518 MS.gene68531:CDS 25.0%
!!! TTTTGGGTTTTGATTAAGTT+GGG + chr3.4:54197237-54197256 None:intergenic 25.0%
!!! TTTTTGGGTTTTGATTAAGT+TGG + chr3.4:54197238-54197257 None:intergenic 25.0%
AAACCTAACCAAAATGGTAT+TGG - chr3.4:54197513-54197532 MS.gene68531:CDS 30.0%
AAGAATAGTTGTAGAATGGA+TGG - chr3.4:54195824-54195843 MS.gene68531:intron 30.0%
AAGAGGTAAAACCATCTAAT+TGG + chr3.4:54197492-54197511 None:intergenic 30.0%
AATAATCAATTCAACGGTTG+GGG - chr3.4:54195332-54195351 MS.gene68531:CDS 30.0%
ACTAAACACTAACCTCTATT+TGG - chr3.4:54196936-54196955 MS.gene68531:intron 30.0%
AGAATAATCAATTCAACGGT+TGG - chr3.4:54195330-54195349 MS.gene68531:CDS 30.0%
AGGAAATTGAAGAGAAGATT+AGG - chr3.4:54196441-54196460 MS.gene68531:CDS 30.0%
AGTCAAGAATAGTTGTAGAA+TGG - chr3.4:54195820-54195839 MS.gene68531:intron 30.0%
ATACTATGTAGTTTATTGGC+AGG - chr3.4:54196035-54196054 MS.gene68531:intron 30.0%
ATGTTATGAAAGCTGAATTG+GGG - chr3.4:54196606-54196625 MS.gene68531:intron 30.0%
ATTACCTGACATTATATGAG+TGG + chr3.4:54196372-54196391 None:intergenic 30.0%
ATTGAGTATGTATGTTTGGT+TGG - chr3.4:54194790-54194809 MS.gene68531:intron 30.0%
ATTTAATTGCAGATACTGAG+CGG - chr3.4:54196294-54196313 MS.gene68531:CDS 30.0%
ATTTCAAAATACATGAGTCG+AGG + chr3.4:54196065-54196084 None:intergenic 30.0%
GAAATATGCAAACTAATCCT+AGG - chr3.4:54197025-54197044 MS.gene68531:intron 30.0%
GAATAATCAATTCAACGGTT+GGG - chr3.4:54195331-54195350 MS.gene68531:CDS 30.0%
GAATGTTATGAAAGCTGAAT+TGG - chr3.4:54196604-54196623 MS.gene68531:intron 30.0%
GCTAACTATATGTATTCACT+TGG - chr3.4:54196811-54196830 MS.gene68531:CDS 30.0%
TAAAGGAAGAAAGGAGTAAT+GGG - chr3.4:54194480-54194499 MS.gene68531:intron 30.0%
TACTATGTAGTTTATTGGCA+GGG - chr3.4:54196036-54196055 MS.gene68531:intron 30.0%
TATGTCACAATTACGATTAG+TGG - chr3.4:54195797-54195816 MS.gene68531:intron 30.0%
TATTCTGTTGTTGAACTAGA+AGG - chr3.4:54195218-54195237 MS.gene68531:CDS 30.0%
TTACCTGACATTATATGAGT+GGG + chr3.4:54196371-54196390 None:intergenic 30.0%
TTCTCTAACCAAACTGAAAA+AGG + chr3.4:54196016-54196035 None:intergenic 30.0%
TTTGAAGATATGATACCTTC+TGG + chr3.4:54197421-54197440 None:intergenic 30.0%
! ACCAACAAATCTGTTCTTTT+TGG + chr3.4:54195588-54195607 None:intergenic 30.0%
! CACTTAATTTTCATGAACGT+GGG - chr3.4:54196178-54196197 MS.gene68531:intron 30.0%
! GAAATCTAAGTTTTTGTGGA+TGG - chr3.4:54196154-54196173 MS.gene68531:intron 30.0%
!!! ACAACTGTTTTTGTTTGGTT+TGG + chr3.4:54197444-54197463 None:intergenic 30.0%
!!! GCAATTTTTGTTGTTTCTTC+AGG + chr3.4:54195699-54195718 None:intergenic 30.0%
AAACCAATTGGAATTACTCC+AGG - chr3.4:54194948-54194967 MS.gene68531:intron 35.0%
AAACCCACTCATATAATGTC+AGG - chr3.4:54196365-54196384 MS.gene68531:CDS 35.0%
AAAGGAAGAAAGGAGTAATG+GGG - chr3.4:54194481-54194500 MS.gene68531:intron 35.0%
AACCAATTGGAATTACTCCA+GGG - chr3.4:54194949-54194968 MS.gene68531:intron 35.0%
AACTTTGTTGCACAAAACTC+AGG - chr3.4:54195911-54195930 MS.gene68531:intron 35.0%
AAGATATGATACCTTCTGGT+TGG + chr3.4:54197417-54197436 None:intergenic 35.0%
AAGTTTAGGGAGAATGGTAA+TGG - chr3.4:54196563-54196582 MS.gene68531:CDS 35.0%
ACGGAAAAGGAAAATTTGAG+GGG - chr3.4:54195486-54195505 MS.gene68531:CDS 35.0%
ACTCAAAGGTGAAAATGTCA+AGG - chr3.4:54196700-54196719 MS.gene68531:CDS 35.0%
AGGTGAAAATGTCAAGGATT+CGG - chr3.4:54196706-54196725 MS.gene68531:CDS 35.0%
AGTTTAGGGAGAATGGTAAT+GGG - chr3.4:54196564-54196583 MS.gene68531:CDS 35.0%
ATGTGCTTGTATTTGCCTTA+TGG - chr3.4:54195935-54195954 MS.gene68531:intron 35.0%
CAATTAGGGTTTCTTCAACA+AGG + chr3.4:54194340-54194359 None:intergenic 35.0%
CACATAAAGTCAATGGAGAA+TGG - chr3.4:54196522-54196541 MS.gene68531:CDS 35.0%
CACGGAAAAGGAAAATTTGA+GGG - chr3.4:54195485-54195504 MS.gene68531:CDS 35.0%
CCACGTTCATGAAAATTAAG+TGG + chr3.4:54196180-54196199 None:intergenic 35.0%
CGAGCCAATGTTAATTACAA+CGG - chr3.4:54197386-54197405 MS.gene68531:CDS 35.0%
CTCTTCAAACCTAACCAAAA+TGG - chr3.4:54197507-54197526 MS.gene68531:CDS 35.0%
CTGACCTTATAAACGTATCT+CGG + chr3.4:54194310-54194329 None:intergenic 35.0%
GCCAAAAAGAACAGATTTGT+TGG - chr3.4:54195584-54195603 MS.gene68531:intron 35.0%
GCTAGGGAAGAAAAGTTAAA+AGG - chr3.4:54194359-54194378 MS.gene68531:CDS 35.0%
GCTTAAAGCTAACAAAGCTT+TGG + chr3.4:54197176-54197195 None:intergenic 35.0%
GCTTCCGTTGTAATTAACAT+TGG + chr3.4:54197393-54197412 None:intergenic 35.0%
GCTTGGTTTAAATGATAGAG+AGG - chr3.4:54195442-54195461 MS.gene68531:CDS 35.0%
GTAAAGGAAGAAAGGAGTAA+TGG - chr3.4:54194479-54194498 MS.gene68531:intron 35.0%
TCATAACATTCCCATCTTCT+AGG + chr3.4:54196595-54196614 None:intergenic 35.0%
TCTAATATCTCGCCAAATAG+AGG + chr3.4:54196951-54196970 None:intergenic 35.0%
TGAAGAAACCCTAATTGCTA+GGG - chr3.4:54194343-54194362 MS.gene68531:CDS 35.0%
TGAAGAGAGTAAAGGAAGAA+AGG - chr3.4:54194471-54194490 MS.gene68531:intron 35.0%
TTCATTCTTAAGCTACTGCT+GGG + chr3.4:54197325-54197344 None:intergenic 35.0%
TTGAAGAAACCCTAATTGCT+AGG - chr3.4:54194342-54194361 MS.gene68531:CDS 35.0%
TTTCATGAACGTGGGAAAAT+TGG - chr3.4:54196186-54196205 MS.gene68531:intron 35.0%
! AAAGAGTCTTGTCCTTTACT+TGG - chr3.4:54195960-54195979 MS.gene68531:intron 35.0%
! AAAGATGCTCTAGTTTCTTC+TGG - chr3.4:54195620-54195639 MS.gene68531:intron 35.0%
! AAAGGAGTAATGGGGAATTA+GGG - chr3.4:54194489-54194508 MS.gene68531:intron 35.0%
! AATAGTCGATTCAAGAGTTG+GGG - chr3.4:54195062-54195081 MS.gene68531:CDS 35.0%
! ACTTTTCTTCCCTAGCAATT+AGG + chr3.4:54194355-54194374 None:intergenic 35.0%
! AGAATAGTCGATTCAAGAGT+TGG - chr3.4:54195060-54195079 MS.gene68531:CDS 35.0%
! AGATATGATACCTTCTGGTT+GGG + chr3.4:54197416-54197435 None:intergenic 35.0%
! CCACTTAATTTTCATGAACG+TGG - chr3.4:54196177-54196196 MS.gene68531:intron 35.0%
! CTTTTCTTCCCTAGCAATTA+GGG + chr3.4:54194354-54194373 None:intergenic 35.0%
! GAATAGTCGATTCAAGAGTT+GGG - chr3.4:54195061-54195080 MS.gene68531:CDS 35.0%
! GGAAAAGGTTAGTGTTGAAA+TGG - chr3.4:54194445-54194464 MS.gene68531:intron 35.0%
! TAACCAAAATGGTATTGGAC+CGG - chr3.4:54197518-54197537 MS.gene68531:CDS 35.0%
! TAAGGCTCAGCATTATGTTT+TGG - chr3.4:54196107-54196126 MS.gene68531:intron 35.0%
! TTTTGGTGAAGGAAAAGAGA+GGG - chr3.4:54194618-54194637 MS.gene68531:intron 35.0%
!! AAGAAGAGAAAGGTTGGTAA+TGG - chr3.4:54194539-54194558 MS.gene68531:intron 35.0%
!! AGAAGAGAAAGGTTGGTAAT+GGG - chr3.4:54194540-54194559 MS.gene68531:intron 35.0%
!! GGTGTTATACTTTTCGACTA+AGG + chr3.4:54197216-54197235 None:intergenic 35.0%
!! TTGAGGTGTTGAAGAATAGA+GGG - chr3.4:54195177-54195196 MS.gene68531:CDS 35.0%
!! TTTGAGGTGTTGAAGAATAG+AGG - chr3.4:54195176-54195195 MS.gene68531:CDS 35.0%
!! TTTTGAAGGTGGAAGAGTTT+TGG - chr3.4:54194601-54194620 MS.gene68531:intron 35.0%
!!! AATGGATGGTGTTTTAACCA+TGG - chr3.4:54195838-54195857 MS.gene68531:intron 35.0%
!!! CATGCTCAATTTTGAGATTG+AGG - chr3.4:54195085-54195104 MS.gene68531:CDS 35.0%
!!! CATTTTGGTTAGGTTTGAAG+AGG + chr3.4:54197509-54197528 None:intergenic 35.0%
!!! GTGACACAACTGTTTTTGTT+TGG + chr3.4:54197449-54197468 None:intergenic 35.0%
!!! TACAAGTGCCTTTTTCAGTT+TGG - chr3.4:54196005-54196024 MS.gene68531:intron 35.0%
!!! TTTTGAGATTGAGGTGAACA+CGG - chr3.4:54195094-54195113 MS.gene68531:CDS 35.0%
AAAATTGACAGCGGTGTTTG+TGG - chr3.4:54197573-54197592 MS.gene68531:CDS 40.0%
AAAGATGGTCAAGGTTCTTC+AGG - chr3.4:54196764-54196783 MS.gene68531:CDS 40.0%
AAAGGAGATTACGAAGCTTG+GGG - chr3.4:54195136-54195155 MS.gene68531:CDS 40.0%
AAAGTCAATGGAGAATGGTG+TGG - chr3.4:54196527-54196546 MS.gene68531:CDS 40.0%
AACCATCTAATTGGAGCTTC+AGG + chr3.4:54197483-54197502 None:intergenic 40.0%
AAGCAACTGAAGAGAAGTTG+AGG - chr3.4:54195027-54195046 MS.gene68531:intron 40.0%
AATGGAGCTGAAGAGAGTAA+AGG - chr3.4:54194463-54194482 MS.gene68531:intron 40.0%
ACCAATTGGAATTACTCCAG+GGG - chr3.4:54194950-54194969 MS.gene68531:intron 40.0%
ACTAGAAGGTGAAAACGTTG+AGG - chr3.4:54195232-54195251 MS.gene68531:CDS 40.0%
AGAAGATTAGGTTACTGCAC+AGG - chr3.4:54196453-54196472 MS.gene68531:CDS 40.0%
AGATGGTGCAGTGAATTTGA+TGG - chr3.4:54195862-54195881 MS.gene68531:intron 40.0%
AGCAAACCTTGCAACAAGAT+TGG - chr3.4:54196340-54196359 MS.gene68531:CDS 40.0%
AGCAACTGAAGAGAAGTTGA+GGG - chr3.4:54195028-54195047 MS.gene68531:intron 40.0%
AGCTCCGAGATACGTTTATA+AGG - chr3.4:54194303-54194322 MS.gene68531:CDS 40.0%
ATTGTTCTTGTGTTCACCAC+TGG + chr3.4:54197275-54197294 None:intergenic 40.0%
CCGAAAAACGGTTCGAAATT+GGG + chr3.4:54194221-54194240 None:intergenic 40.0%
CTGCTCTTCATTTCCTATTC+TGG - chr3.4:54196237-54196256 MS.gene68531:CDS 40.0%
GAAAGGAGATTACGAAGCTT+GGG - chr3.4:54195135-54195154 MS.gene68531:CDS 40.0%
GAAGTCAATGTGCCAAGTAA+AGG + chr3.4:54195975-54195994 None:intergenic 40.0%
GACAAGACTCTTTCACCATA+AGG + chr3.4:54195953-54195972 None:intergenic 40.0%
GCACGGAAAAGGAAAATTTG+AGG - chr3.4:54195484-54195503 MS.gene68531:CDS 40.0%
GCAGCAACTAAAATTGACAG+CGG - chr3.4:54197564-54197583 MS.gene68531:CDS 40.0%
GCAGTAGCTTAAGAATGAAC+TGG - chr3.4:54197326-54197345 MS.gene68531:CDS 40.0%
GTTCATTCTTAAGCTACTGC+TGG + chr3.4:54197326-54197345 None:intergenic 40.0%
GTTGAGGCACATAAAGTCAA+TGG - chr3.4:54196515-54196534 MS.gene68531:CDS 40.0%
GTTTAGCCAATCTTGTTGCA+AGG + chr3.4:54196349-54196368 None:intergenic 40.0%
TATAAACGTATCTCGGAGCT+CGG + chr3.4:54194303-54194322 None:intergenic 40.0%
TCCGAAAAACGGTTCGAAAT+TGG + chr3.4:54194222-54194241 None:intergenic 40.0%
TGCAAACTAATCCTAGGAGA+TGG - chr3.4:54197031-54197050 MS.gene68531:intron 40.0%
TGTGCTCTGTCATGACATTA+AGG - chr3.4:54195767-54195786 MS.gene68531:intron 40.0%
TTGAGGGGTTGAAGAATAGA+GGG - chr3.4:54195501-54195520 MS.gene68531:CDS 40.0%
TTGAGGTGGTGAAGAATAGT+GGG - chr3.4:54196645-54196664 MS.gene68531:CDS 40.0%
TTGGTGAAGTTTAGGGAGAA+TGG - chr3.4:54196557-54196576 MS.gene68531:CDS 40.0%
TTTGAGGGGTTGAAGAATAG+AGG - chr3.4:54195500-54195519 MS.gene68531:CDS 40.0%
TTTGGTGAAGGAAAAGAGAG+GGG - chr3.4:54194619-54194638 MS.gene68531:intron 40.0%
! AGGTGAAAACGTTGAGGTTT+TGG - chr3.4:54195238-54195257 MS.gene68531:CDS 40.0%
! AGTAATGGGGAATTAGGGTT+TGG - chr3.4:54194494-54194513 MS.gene68531:intron 40.0%
! GAAAGGAGTAATGGGGAATT+AGG - chr3.4:54194488-54194507 MS.gene68531:intron 40.0%
! GATATGATACCTTCTGGTTG+GGG + chr3.4:54197415-54197434 None:intergenic 40.0%
! TGCTCTAGTTTCTTCTGGTA+TGG - chr3.4:54195625-54195644 MS.gene68531:intron 40.0%
! TGTGCTGTTAGTGAACTCAA+AGG - chr3.4:54196686-54196705 MS.gene68531:CDS 40.0%
!! AACAAAGCTTTGGCTTGAGA+GGG + chr3.4:54197166-54197185 None:intergenic 40.0%
!! AACAGATTTGTTGGTGAACC+AGG - chr3.4:54195593-54195612 MS.gene68531:intron 40.0%
!! AAGAATAGAGGGGTTGGTAA+TGG - chr3.4:54195188-54195207 MS.gene68531:CDS 40.0%
!! AGAATAGAGGGGTTGGTAAT+GGG - chr3.4:54195189-54195208 MS.gene68531:CDS 40.0%
!! CCCAATTTCGAACCGTTTTT+CGG - chr3.4:54194218-54194237 MS.gene68531:CDS 40.0%
!! GAAGAGAAAGGTTGGTAATG+GGG - chr3.4:54194541-54194560 MS.gene68531:intron 40.0%
!! GTTTTGGTGAAGGAAAAGAG+AGG - chr3.4:54194617-54194636 MS.gene68531:intron 40.0%
!! TAACAAAGCTTTGGCTTGAG+AGG + chr3.4:54197167-54197186 None:intergenic 40.0%
!! TGAGGAGTTGGTGAAGTTTA+GGG - chr3.4:54196550-54196569 MS.gene68531:CDS 40.0%
!! TGAGGTGTTGAAGAATAGAG+GGG - chr3.4:54195178-54195197 MS.gene68531:CDS 40.0%
!!! AAGGCTCAATTTTGAGGTTG+AGG - chr3.4:54195355-54195374 MS.gene68531:CDS 40.0%
!!! AGGTTTTGAAAGCTGCAGTT+GGG - chr3.4:54195462-54195481 MS.gene68531:CDS 40.0%
!!! GGTCCAATACCATTTTGGTT+AGG + chr3.4:54197519-54197538 None:intergenic 40.0%
!!! TGTCAATTTTAGTTGCTGCC+TGG + chr3.4:54197563-54197582 None:intergenic 40.0%
AAGAGGAGCTCATGAAGGTT+GGG - chr3.4:54195405-54195424 MS.gene68531:CDS 45.0%
AATGGGACTGACCTAGAAGA+TGG - chr3.4:54196581-54196600 MS.gene68531:intron 45.0%
ACACGGTCAAAATTATCCCC+TGG + chr3.4:54194969-54194988 None:intergenic 45.0%
ACTTCAAGAGTGGTTAGCAC+CGG + chr3.4:54197540-54197559 None:intergenic 45.0%
AGTGGCTGAAGAAAAGGTGA+GGG - chr3.4:54195298-54195317 MS.gene68531:CDS 45.0%
ATCAACAGTGAAGAGCCCTT+AGG - chr3.4:54196395-54196414 MS.gene68531:CDS 45.0%
ATCAATTCAACGGTTGGGGA+AGG - chr3.4:54195336-54195355 MS.gene68531:CDS 45.0%
ATGGGACTGACCTAGAAGAT+GGG - chr3.4:54196582-54196601 MS.gene68531:intron 45.0%
ATGGGGAATTAGGGTTTGGA+AGG - chr3.4:54194498-54194517 MS.gene68531:intron 45.0%
ATGTCAAGGATTCGGCTGAA+AGG - chr3.4:54196714-54196733 MS.gene68531:CDS 45.0%
CACCTGAAGCTCCAATTAGA+TGG - chr3.4:54197478-54197497 MS.gene68531:CDS 45.0%
CCAAGCAAGAAAGATGGTCA+AGG - chr3.4:54196755-54196774 MS.gene68531:CDS 45.0%
CCTTGACCATCTTTCTTGCT+TGG + chr3.4:54196758-54196777 None:intergenic 45.0%
CGTATCATAGACCATCTCCT+AGG + chr3.4:54197045-54197064 None:intergenic 45.0%
CTTGAGGTGGTGAAGAATAG+TGG - chr3.4:54196644-54196663 MS.gene68531:CDS 45.0%
GAATGAAAGACACGAGCTTG+AGG - chr3.4:54196628-54196647 MS.gene68531:intron 45.0%
GGAAAGGAGATTACGAAGCT+TGG - chr3.4:54195134-54195153 MS.gene68531:CDS 45.0%
GGTGAACAGAGCAAGAAAGA+TGG - chr3.4:54194644-54194663 MS.gene68531:intron 45.0%
GGTGAACCAAGCAAGAAAGA+TGG - chr3.4:54196749-54196768 MS.gene68531:CDS 45.0%
GGTTAGGGAAGCAATGTTGA+AGG - chr3.4:54195004-54195023 MS.gene68531:intron 45.0%
GTGTTGAAGAATAGAGGGGT+TGG - chr3.4:54195182-54195201 MS.gene68531:CDS 45.0%
TCAACAGTGAAGAGCCCTTA+GGG - chr3.4:54196396-54196415 MS.gene68531:CDS 45.0%
TCCCCTGGAGTAATTCCAAT+TGG + chr3.4:54194954-54194973 None:intergenic 45.0%
TCTAATTGGAGCTTCAGGTG+TGG + chr3.4:54197478-54197497 None:intergenic 45.0%
TCTGAACCGGAAGACTATCT+CGG - chr3.4:54194268-54194287 MS.gene68531:CDS 45.0%
TCTTCCGGTTCAGATTACTC+CGG + chr3.4:54194262-54194281 None:intergenic 45.0%
TGAAGTGGGGAAGAAGAGAA+AGG - chr3.4:54194529-54194548 MS.gene68531:intron 45.0%
TGAGGGGTTGAAGAATAGAG+GGG - chr3.4:54195502-54195521 MS.gene68531:CDS 45.0%
TGAGGTGGTGAAGAATAGTG+GGG - chr3.4:54196646-54196665 MS.gene68531:CDS 45.0%
TGGTCAAGGTTCTTCAGGTA+TGG - chr3.4:54196769-54196788 MS.gene68531:CDS 45.0%
TTCCCTAACCACTAGAGTCT+TGG + chr3.4:54195264-54195283 None:intergenic 45.0%
TTCGGCTGAAAGGAAGAGAT+TGG - chr3.4:54196724-54196743 MS.gene68531:CDS 45.0%
! AAGAATAGTGGGGATGCTGA+TGG - chr3.4:54196656-54196675 MS.gene68531:CDS 45.0%
! ACTAGAGCATCTTTCTTGCC+TGG + chr3.4:54195614-54195633 None:intergenic 45.0%
! AGAATAGTGGGGATGCTGAT+GGG - chr3.4:54196657-54196676 MS.gene68531:CDS 45.0%
! TGTTGGAAAGGTCGAGGTTT+TGG - chr3.4:54195562-54195581 MS.gene68531:intron 45.0%
! TTAGGGTTTGGAAGGTGTAG+TGG - chr3.4:54194506-54194525 MS.gene68531:intron 45.0%
! TTGGGGAAGGCTCAATTTTG+AGG - chr3.4:54195349-54195368 MS.gene68531:CDS 45.0%
!! ACAAAGCTTTGGCTTGAGAG+GGG + chr3.4:54197165-54197184 None:intergenic 45.0%
!! AGGTGGAAGAGTTTTGGTGA+AGG - chr3.4:54194607-54194626 MS.gene68531:intron 45.0%
!! GAATAGAGGGGTTGGTAATG+GGG - chr3.4:54195190-54195209 MS.gene68531:CDS 45.0%
!! GTGAGGAGTTGGTGAAGTTT+AGG - chr3.4:54196549-54196568 MS.gene68531:CDS 45.0%
!! TTTCGAACCGTTTTTCGGAC+CGG - chr3.4:54194223-54194242 MS.gene68531:CDS 45.0%
!!! CATTGGCTCGAAAGCCATTT+TGG + chr3.4:54197376-54197395 None:intergenic 45.0%
!!! GAGGTTTTGAAAGCTGCAGT+TGG - chr3.4:54195461-54195480 MS.gene68531:CDS 45.0%
!!! GGTGTTTTAACCATGGCAGA+TGG - chr3.4:54195845-54195864 MS.gene68531:intron 45.0%
AAAGATGGCGTAGGTGCTTC+AGG - chr3.4:54194659-54194678 MS.gene68531:intron 50.0%
AAGGTTGGGGAGAACGGTAA+TGG - chr3.4:54195419-54195438 MS.gene68531:CDS 50.0%
ACTGGATGTTGGAAAGGTCG+AGG - chr3.4:54195556-54195575 MS.gene68531:intron 50.0%
AGAATGGTGTGGTGAGGAGT+TGG - chr3.4:54196538-54196557 MS.gene68531:CDS 50.0%
AGACGAGACGCTAGTGGTTA+GGG - chr3.4:54194989-54195008 MS.gene68531:intron 50.0%
AGAGGAGCTCATGAAGGTTG+GGG - chr3.4:54195406-54195425 MS.gene68531:CDS 50.0%
AGCACGATGTTGAACCAAGC+TGG - chr3.4:54197597-54197616 MS.gene68531:CDS 50.0%
AGGTTGGGGAGAACGGTAAT+GGG - chr3.4:54195420-54195439 MS.gene68531:CDS 50.0%
ATTCACTGCACCATCTGCCA+TGG + chr3.4:54195858-54195877 None:intergenic 50.0%
ATTGAGGTGAACACGGTCAC+AGG - chr3.4:54195101-54195120 MS.gene68531:CDS 50.0%
CAACAGTGAAGAGCCCTTAG+GGG - chr3.4:54196397-54196416 MS.gene68531:CDS 50.0%
CAATCGTCCGGTCCGAAAAA+CGG + chr3.4:54194233-54194252 None:intergenic 50.0%
CAATGGAGAATGGTGTGGTG+AGG - chr3.4:54196532-54196551 MS.gene68531:CDS 50.0%
CAGAGCAAGAAAGATGGCGT+AGG - chr3.4:54194650-54194669 MS.gene68531:intron 50.0%
CAGTGGCTGAAGAAAAGGTG+AGG - chr3.4:54195297-54195316 MS.gene68531:CDS 50.0%
CTCATGAAGGTTGGGGAGAA+CGG - chr3.4:54195413-54195432 MS.gene68531:CDS 50.0%
GAAGAGGAGCTCATGAAGGT+TGG - chr3.4:54195404-54195423 MS.gene68531:CDS 50.0%
GAAGGCAGTGGCTGAAGAAA+AGG - chr3.4:54195292-54195311 MS.gene68531:CDS 50.0%
GCTAACCACTCTTGAAGTCC+AGG - chr3.4:54197542-54197561 MS.gene68531:CDS 50.0%
GCTGAAAGGAAGAGATTGGC+TGG - chr3.4:54196728-54196747 MS.gene68531:CDS 50.0%
GGAAGCAATGTTGAAGGCAG+TGG - chr3.4:54195280-54195299 MS.gene68531:CDS 50.0%
GGCCAAGACTCTAGTGGTTA+GGG - chr3.4:54195259-54195278 MS.gene68531:CDS 50.0%
GGGTTGAAGAATAGAGGGGT+TGG - chr3.4:54195506-54195525 MS.gene68531:CDS 50.0%
GGTTGAGGTGAAGACAGTCA+CGG - chr3.4:54195370-54195389 MS.gene68531:CDS 50.0%
GTGAAGGAAAAGAGAGGGGT+TGG - chr3.4:54194623-54194642 MS.gene68531:intron 50.0%
GTGGGGAAGAAGAGAAAGGT+TGG - chr3.4:54194533-54194552 MS.gene68531:intron 50.0%
GTTGAGGTGAAGACAGTCAC+GGG - chr3.4:54195371-54195390 MS.gene68531:CDS 50.0%
TAGACGAGACGCTAGTGGTT+AGG - chr3.4:54194988-54195007 MS.gene68531:intron 50.0%
TGAAAGACACGAGCTTGAGG+TGG - chr3.4:54196631-54196650 MS.gene68531:intron 50.0%
TGAAGACAGTCACGGGAGAA+AGG - chr3.4:54195378-54195397 MS.gene68531:CDS 50.0%
TGCGGAACTGGATGTTGGAA+AGG - chr3.4:54195550-54195569 MS.gene68531:intron 50.0%
TGGCCAAGACTCTAGTGGTT+AGG - chr3.4:54195258-54195277 MS.gene68531:CDS 50.0%
TTGAAAGCTGCAGTTGGGCA+CGG - chr3.4:54195467-54195486 MS.gene68531:CDS 50.0%
TTTGCTTCCCTGTCCCCTAA+GGG + chr3.4:54196413-54196432 None:intergenic 50.0%
! GAAGGTGTAGTGGTGAAGTG+GGG - chr3.4:54194516-54194535 MS.gene68531:intron 50.0%
! GAATAGTGGGGATGCTGATG+GGG - chr3.4:54196658-54196677 MS.gene68531:CDS 50.0%
! GGAAGGTGTAGTGGTGAAGT+GGG - chr3.4:54194515-54194534 MS.gene68531:intron 50.0%
! TGGAAGGTGTAGTGGTGAAG+TGG - chr3.4:54194514-54194533 MS.gene68531:intron 50.0%
!! GCACCGGTCCAATACCATTT+TGG + chr3.4:54197524-54197543 None:intergenic 50.0%
!! GGTGGTGGTGATTTTGAAGG+TGG - chr3.4:54194590-54194609 MS.gene68531:intron 50.0%
!! GGTTTTGGCCAAGACTCTAG+TGG - chr3.4:54195253-54195272 MS.gene68531:CDS 50.0%
!! GTTGGTAATGGGGTTTCGTG+TGG - chr3.4:54194551-54194570 MS.gene68531:intron 50.0%
!!! GGTGGTGGTGGTGATTTTGA+AGG - chr3.4:54194587-54194606 MS.gene68531:intron 50.0%
!!! GTTTCGTGTGGTGGTGGTTT+TGG - chr3.4:54194563-54194582 MS.gene68531:intron 50.0%
AACGGTTCGAAATTGGGCCG+CGG + chr3.4:54194215-54194234 None:intergenic 55.0%
AATGGGGTTTCGTGTGGTGG+TGG - chr3.4:54194557-54194576 MS.gene68531:intron 55.0%
CAGGGAAGCAAAGCTGAAGG+AGG - chr3.4:54196421-54196440 MS.gene68531:CDS 55.0%
CCACTAGCGTCTCGTCTACA+CGG + chr3.4:54194986-54195005 None:intergenic 55.0%
CGAGCTCCGAGATAGTCTTC+CGG + chr3.4:54194277-54194296 None:intergenic 55.0%
CTTTGCTTCCCTGTCCCCTA+AGG + chr3.4:54196414-54196433 None:intergenic 55.0%
GCGTGAAGAGGAGCTCATGA+AGG - chr3.4:54195400-54195419 MS.gene68531:CDS 55.0%
GCTGTTGCGGAACTGGATGT+TGG - chr3.4:54195545-54195564 MS.gene68531:intron 55.0%
GGACAGGGAAGCAAAGCTGA+AGG - chr3.4:54196418-54196437 MS.gene68531:CDS 55.0%
GGAGCCGGAGTAATCTGAAC+CGG - chr3.4:54194255-54194274 MS.gene68531:CDS 55.0%
TGAACACGGTCACAGGAGGA+AGG - chr3.4:54195108-54195127 MS.gene68531:CDS 55.0%
TGAAGAGCCCTTAGGGGACA+GGG - chr3.4:54196403-54196422 MS.gene68531:CDS 55.0%
TGCTGCCTGGACTTCAAGAG+TGG + chr3.4:54197550-54197569 None:intergenic 55.0%
TGGCGTAGGTGCTTCAGGTA+TGG - chr3.4:54194664-54194683 MS.gene68531:intron 55.0%
! CACAGGAGGAAGGCATGGAA+AGG - chr3.4:54195118-54195137 MS.gene68531:CDS 55.0%
! TTTTCGGACCGGACGATTGG+CGG - chr3.4:54194234-54194253 MS.gene68531:CDS 55.0%
!! CGTTTTTCGGACCGGACGAT+TGG - chr3.4:54194231-54194250 MS.gene68531:CDS 55.0%
!! GGTAATGGGGTTTCGTGTGG+TGG - chr3.4:54194554-54194573 MS.gene68531:intron 55.0%
!! TAGAGGGGTTGGTAATGGGG+AGG - chr3.4:54195193-54195212 MS.gene68531:CDS 55.0%
!!! TCGTGTGGTGGTGGTTTTGG+TGG - chr3.4:54194566-54194585 MS.gene68531:intron 55.0%
!!! TGTGGTGGTGGTTTTGGTGG+TGG - chr3.4:54194569-54194588 MS.gene68531:intron 55.0%
ACGGTCACAGGAGGAAGGCA+TGG - chr3.4:54195113-54195132 MS.gene68531:CDS 60.0%
CAACGGAAGCCCCAACCAGA+AGG - chr3.4:54197403-54197422 MS.gene68531:CDS 60.0%
CCGTGTAGACGAGACGCTAG+TGG - chr3.4:54194983-54195002 MS.gene68531:intron 60.0%
GAGGTGAACACGGTCACAGG+AGG - chr3.4:54195104-54195123 MS.gene68531:CDS 60.0%
GCTGCAGTTGGGCACGGAAA+AGG - chr3.4:54195473-54195492 MS.gene68531:CDS 60.0%
GTGAAGAGCCCTTAGGGGAC+AGG - chr3.4:54196402-54196421 MS.gene68531:CDS 60.0%
TAGTGGGGATGCTGATGGGG+AGG - chr3.4:54196661-54196680 MS.gene68531:CDS 60.0%
! CACGGGAGAAAGGCGTGAAG+AGG - chr3.4:54195388-54195407 MS.gene68531:CDS 60.0%
! GGCTTGTGCTGTTGCGGAAC+TGG - chr3.4:54195538-54195557 MS.gene68531:intron 60.0%
! TGGGGAGGCTTGTGCTGTTG+CGG - chr3.4:54195532-54195551 MS.gene68531:intron 60.0%
!! GGGGAGAACGGTAATGGGCT+TGG - chr3.4:54195425-54195444 MS.gene68531:CDS 60.0%
!!! GGTGGTGGTTTTGGTGGTGG+TGG - chr3.4:54194572-54194591 MS.gene68531:intron 60.0%
!!! GGTGGTTTTGGTGGTGGTGG+TGG - chr3.4:54194575-54194594 MS.gene68531:intron 60.0%
CTCCGGCTCCGCCAATCGTC+CGG + chr3.4:54194245-54194264 None:intergenic 70.0%
GACCGGACGATTGGCGGAGC+CGG - chr3.4:54194240-54194259 MS.gene68531:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 54194206 54197632 54194206 ID=MS.gene68531
chr3.4 mRNA 54194206 54197632 54194206 ID=MS.gene68531.t1;Parent=MS.gene68531
chr3.4 exon 54197288 54197632 54197288 ID=MS.gene68531.t1.exon1;Parent=MS.gene68531.t1
chr3.4 CDS 54197288 54197632 54197288 ID=cds.MS.gene68531.t1;Parent=MS.gene68531.t1
chr3.4 exon 54197158 54197209 54197158 ID=MS.gene68531.t1.exon2;Parent=MS.gene68531.t1
chr3.4 CDS 54197158 54197209 54197158 ID=cds.MS.gene68531.t1;Parent=MS.gene68531.t1
chr3.4 exon 54196635 54196868 54196635 ID=MS.gene68531.t1.exon3;Parent=MS.gene68531.t1
chr3.4 CDS 54196635 54196868 54196635 ID=cds.MS.gene68531.t1;Parent=MS.gene68531.t1
chr3.4 exon 54196197 54196598 54196197 ID=MS.gene68531.t1.exon4;Parent=MS.gene68531.t1
chr3.4 CDS 54196197 54196598 54196197 ID=cds.MS.gene68531.t1;Parent=MS.gene68531.t1
chr3.4 exon 54195053 54195532 54195053 ID=MS.gene68531.t1.exon5;Parent=MS.gene68531.t1
chr3.4 CDS 54195053 54195532 54195053 ID=cds.MS.gene68531.t1;Parent=MS.gene68531.t1
chr3.4 exon 54194206 54194378 54194206 ID=MS.gene68531.t1.exon6;Parent=MS.gene68531.t1
chr3.4 CDS 54194206 54194378 54194206 ID=cds.MS.gene68531.t1;Parent=MS.gene68531.t1
Gene Sequence

>MS.gene68531

ATGGAACCGCGGCCCAATTTCGAACCGTTTTTCGGACCGGACGATTGGCGGAGCCGGAGTAATCTGAACCGGAAGACTATCTCGGAGCTCGTATCCGAGCTCCGAGATACGTTTATAAGGTCAGATTTCGACCTTGTTGAAGAAACCCTAATTGCTAGGGAAGAAAAGTTAAAAGGTGAGATTGATCAGAAGAAGAATGAAATTGAGTTGTTAAAAGAGAAATTTGATATGTTAATGTTGGAAAAGGTTAGTGTTGAAATGGAGCTGAAGAGAGTAAAGGAAGAAAGGAGTAATGGGGAATTAGGGTTTGGAAGGTGTAGTGGTGAAGTGGGGAAGAAGAGAAAGGTTGGTAATGGGGTTTCGTGTGGTGGTGGTTTTGGTGGTGGTGGTGGTGATTTTGAAGGTGGAAGAGTTTTGGTGAAGGAAAAGAGAGGGGTTGGTGAACAGAGCAAGAAAGATGGCGTAGGTGCTTCAGGTATGGTGATTTTAAGTGCTTTTTTGATGATTATGTTTGTTTAAGTGCTTTTTTGATGATTATGTTTGTTTAAGTGCTTTTTTTGATGATTATGTTTGCATACATTATTATTGAGTATGTATGTTTGGTTGGTTCGACGTTTACGAAAATTGATTTTACTAAAACGATATTAAAAACCCGTATTTGATGAAGAATTATCATTGTTTTAAATACTTTTAGAATTTTAATTAGTAGTTAAGTTATATTGGGTTTTGTTTTTTTATGTTTAAACCAATTGGAATTACTCCAGGGGATAATTTTGACCGTGTAGACGAGACGCTAGTGGTTAGGGAAGCAATGTTGAAGCAAGCAACTGAAGAGAAGTTGAGGGAACTACTAGAGAATAGTCGATTCAAGAGTTGGGGCATGCTCAATTTTGAGATTGAGGTGAACACGGTCACAGGAGGAAGGCATGGAAAGGAGATTACGAAGCTTGGGGAGAATGAAAAATACAAATTTGAGGTGTTGAAGAATAGAGGGGTTGGTAATGGGGAGGCTTATTCTGTTGTTGAACTAGAAGGTGAAAACGTTGAGGTTTTGGCCAAGACTCTAGTGGTTAGGGAAGCAATGTTGAAGGCAGTGGCTGAAGAAAAGGTGAGGGAATTACAAGAGAATAATCAATTCAACGGTTGGGGAAGGCTCAATTTTGAGGTTGAGGTGAAGACAGTCACGGGAGAAAGGCGTGAAGAGGAGCTCATGAAGGTTGGGGAGAACGGTAATGGGCTTGGTTTAAATGATAGAGAGGTTTTGAAAGCTGCAGTTGGGCACGGAAAAGGAAAATTTGAGGGGTTGAAGAATAGAGGGGTTGGTAATGGGGAGGCTTGTGCTGTTGCGGAACTGGATGTTGGAAAGGTCGAGGTTTTGGCCAAAAAGAACAGATTTGTTGGTGAACCAGGCAAGAAAGATGCTCTAGTTTCTTCTGGTATGGAAATTTTATTTGCTTGTTTGCTGCCTATGTATGCATTCTTTAATGTTACCTGAAGAAACAACAAAAATTGCAATGTTTTGTTAGTATTATGATCAAGATAATTTGTTGGACACTAGTTTTGTGCTCTGTCATGACATTAAGGCAGTGTCTATGTCACAATTACGATTAGTGGAGTCAAGAATAGTTGTAGAATGGATGGTGTTTTAACCATGGCAGATGGTGCAGTGAATTTGATGGAAAAAATGGTGAATTTTTGTGTTTAAAACTTTGTTGCACAAAACTCAGGAATGTGCTTGTATTTGCCTTATGGTGAAAGAGTCTTGTCCTTTACTTGGCACATTGACTTCTACATTTCTCTACAAGTGCCTTTTTCAGTTTGGTTAGAGAATACTATGTAGTTTATTGGCAGGGTATCCTCGACTCATGTATTTTGAAATTCATTTGATGTAACTAGTAATATAAGGCTCAGCATTATGTTTTGGCATTTTTATTTGTAAAATTTAGTAGAAATCTAAGTTTTTGTGGATGGCCACTTAATTTTCATGAACGTGGGAAAATTGGCAATATTTTACAAGGGTTATAAACTCTACTGCTCTTCATTTCCTATTCTGGAAGTAATTAATTGTTGGCTGATCTATTATGTCACATTTAATTGCAGATACTGAGCGGCTAAGTTCATCAAGAGCAGTAAAAGCAAACCTTGCAACAAGATTGGCTAAACCCACTCATATAATGTCAGGTAATGATATCAACAGTGAAGAGCCCTTAGGGGACAGGGAAGCAAAGCTGAAGGAGGAAATTGAAGAGAAGATTAGGTTACTGCACAGGAAGAATCAATTTAAGAGCTTTGGAATACATGATTTTGATGTTGAGGCACATAAAGTCAATGGAGAATGGTGTGGTGAGGAGTTGGTGAAGTTTAGGGAGAATGGTAATGGGACTGACCTAGAAGATGGGAATGTTATGAAAGCTGAATTGGGGAATGAAAGACACGAGCTTGAGGTGGTGAAGAATAGTGGGGATGCTGATGGGGAGGCTTGTGCTGTTAGTGAACTCAAAGGTGAAAATGTCAAGGATTCGGCTGAAAGGAAGAGATTGGCTGGTGAACCAAGCAAGAAAGATGGTCAAGGTTCTTCAGGTATGGAGTTTTTAACTGCTTTTTTGCTAACTATATGTATTCACTTGGTGCTCATGTTTGCTAACAATATATGCATTCTTGAAAAAACTATTGAAGTTATGGGCTTGAGATAAAAGAAGAAAAAAAAAATATATTTTGAATATGAAAGAAACTAAACACTAACCTCTATTTGGCGAGATATTAGACTCCTAGTCCTATATAAAAAGATAAGTTAAAAAACAAATCATGATAATAACTAAGAAATATGCAAACTAATCCTAGGAGATGGTCTATGATACGATAATGTTAGAAATTAATCTTAAGGGATACGCCACTATACTCTAACACATTATTAGGATATTCTAAGGTTTTTTTTTTAATATTATCAATTCTAATACCCCTCTCAAGCCAAAGCTTTGTTAGCTTTAAGCTTGTTATAAATGTATATCCTTAGTCGAAAAGTATAACACCCAACTTAATCAAAACCCAAAAAGATATTTTGATAAACCAGTGGTGAACACAAGAACAATTTAATTATTTAGTCAATAAAGTTTGTGCCCAGCAGTAGCTTAAGAATGAACTGGAAGATGACACAACTTCAAATCAAACCAAAATGGCTTTCGAGCCAATGTTAATTACAACGGAAGCCCCAACCAGAAGGTATCATATCTTCAAACCAAACCAAACAAAAACAGTTGTGTCACTGCTAACCACACCTGAAGCTCCAATTAGATGGTTTTACCTCTTCAAACCTAACCAAAATGGTATTGGACCGGTGCTAACCACTCTTGAAGTCCAGGCAGCAACTAAAATTGACAGCGGTGTTTGTGGCAGCACGATGTTGAACCAAGCTGGAGCGATACATTGA

Protein sequence

>MS.gene68531.t1

MEPRPNFEPFFGPDDWRSRSNLNRKTISELVSELRDTFIRSDFDLVEETLIAREEKLKGEIDQKKNEIELLKEKFDMLMLEKVSVEMELKRVKEERSNGELGFGRCSGEVGKKRKEKRGVGEQSKKDGVGASGDNFDRVDETLVVREAMLKQATEEKLRELLENSRFKSWGMLNFEIEVNTVTGGRHGKEITKLGENEKYKFEVLKNRGVGENVEVLAKTLVVREAMLKAVAEEKVRELQENNQFNGWGRLNFEVEVKTVTGERREEELMKVGENGNGLGLNDREVLKAAVGHGKGKFEGLKNRGVGNGEACAVAELDVGKVEVLAKKNRFVGEPGKKDALVSSDTERLSSSRAVKANLATRLAKPTHIMSGNDINSEEPLGDREAKLKEEIEEKIRLLHRKNQFKSFGIHDFDVEAHKVNGEWCGEELVKFRENGNGTDLEDGNVMKAELGNERHELEVVKNSGDADGEACAVSELKGENVKDSAERKRLAGEPSKKDGQGSSVVSLLTTPEAPIRWFYLFKPNQNGIGPVLTTLEVQAATKIDSGVCGSTMLNQAGAIH