Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68531.t1 | XP_013459971.1 | 68.6 | 547 | 70 | 5 | 1 | 503 | 1 | 489 | 3.00E-183 | 651.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68531.t1 | A0A072UWM6 | 68.6 | 547 | 70 | 5 | 1 | 503 | 1 | 489 | 2.2e-183 | 651.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049159 | MS.gene68531 | 0.808534 | 2.95E-50 | -1.69E-46 |
MS.gene052519 | MS.gene68531 | 0.837778 | 4.25E-57 | -1.69E-46 |
MS.gene052863 | MS.gene68531 | 0.8386 | 2.61E-57 | -1.69E-46 |
MS.gene053008 | MS.gene68531 | 0.851431 | 8.92E-61 | -1.69E-46 |
MS.gene053226 | MS.gene68531 | 0.809364 | 1.96E-50 | -1.69E-46 |
MS.gene054651 | MS.gene68531 | 0.815907 | 7.27E-52 | -1.69E-46 |
MS.gene055818 | MS.gene68531 | 0.808215 | 3.46E-50 | -1.69E-46 |
MS.gene058037 | MS.gene68531 | 0.802204 | 6.27E-49 | -1.69E-46 |
MS.gene058625 | MS.gene68531 | 0.824751 | 6.81E-54 | -1.69E-46 |
MS.gene058783 | MS.gene68531 | 0.802428 | 5.64E-49 | -1.69E-46 |
MS.gene059842 | MS.gene68531 | 0.819523 | 1.11E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68531.t1 | MTR_3g056730 | 66.216 | 592 | 87 | 6 | 1 | 537 | 1 | 534 | 0.0 | 687 |
MS.gene68531.t1 | MTR_3g057330 | 55.975 | 159 | 44 | 4 | 1 | 133 | 1 | 159 | 1.64e-30 | 117 |
MS.gene68531.t1 | MTR_3g057160 | 53.521 | 142 | 45 | 2 | 12 | 132 | 16 | 157 | 1.46e-25 | 105 |
MS.gene68531.t1 | MTR_3g057030 | 50.435 | 115 | 37 | 2 | 12 | 115 | 24 | 129 | 3.29e-19 | 84.7 |
MS.gene68531.t1 | MTR_3g056755 | 54.455 | 101 | 35 | 1 | 26 | 115 | 5 | 105 | 1.88e-16 | 77.4 |
MS.gene68531.t1 | MTR_8g016620 | 54.455 | 101 | 35 | 1 | 26 | 115 | 2 | 102 | 1.94e-16 | 75.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 177 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAGGAGTAATGGGGAATT+AGG | 0.182122 | 3.4:-54197328 | MS.gene68531:CDS |
AAGAGGTAAAACCATCTAAT+TGG | 0.236209 | 3.4:+54194327 | None:intergenic |
TCATAACATTCCCATCTTCT+AGG | 0.237537 | 3.4:+54195224 | None:intergenic |
GCACCGGTCCAATACCATTT+TGG | 0.247957 | 3.4:+54194295 | None:intergenic |
TGAGGAGTTGGTGAAGTTTA+GGG | 0.269745 | 3.4:-54195266 | MS.gene68531:CDS |
AGGTGAAAACGTTGAGGTTT+TGG | 0.277673 | 3.4:-54196578 | MS.gene68531:CDS |
AAGAATCAATTTAAGAGCTT+TGG | 0.281851 | 3.4:-54195340 | MS.gene68531:CDS |
TGTTGGAAAGGTCGAGGTTT+TGG | 0.292214 | 3.4:-54196254 | MS.gene68531:CDS |
GGCTTGTGCTGTTGCGGAAC+TGG | 0.296718 | 3.4:-54196278 | MS.gene68531:CDS |
AGAATAGAGGGGTTGGTAAT+GGG | 0.305592 | 3.4:-54196303 | MS.gene68531:CDS |
TAAAGGAAGAAAGGAGTAAT+GGG | 0.312608 | 3.4:-54197336 | MS.gene68531:CDS |
GTGAGGAGTTGGTGAAGTTT+AGG | 0.314237 | 3.4:-54195267 | MS.gene68531:CDS |
AACCATCTAATTGGAGCTTC+AGG | 0.320679 | 3.4:+54194336 | None:intergenic |
GCTAGGGAAGAAAAGTTAAA+AGG | 0.323691 | 3.4:-54197457 | MS.gene68531:CDS |
AAAGATGCTCTAGTTTCTTC+TGG | 0.328325 | 3.4:-54196196 | MS.gene68531:intron |
AAAGATGGTCAAGGTTCTTC+AGG | 0.328828 | 3.4:-54195052 | MS.gene68531:intron |
AAAGATGGCGTAGGTGCTTC+AGG | 0.332452 | 3.4:-54197157 | MS.gene68531:intron |
CTCTTCAAACCTAACCAAAA+TGG | 0.334109 | 3.4:-54194309 | MS.gene68531:CDS |
AGGAAATTGAAGAGAAGATT+AGG | 0.342554 | 3.4:-54195375 | MS.gene68531:CDS |
TGGCCAAGACTCTAGTGGTT+AGG | 0.349610 | 3.4:-54196558 | MS.gene68531:CDS |
TAGACGAGACGCTAGTGGTT+AGG | 0.352615 | 3.4:-54196828 | MS.gene68531:CDS |
CCTTGACCATCTTTCTTGCT+TGG | 0.353964 | 3.4:+54195061 | None:intergenic |
GAATGTTATGAAAGCTGAAT+TGG | 0.370397 | 3.4:-54195212 | MS.gene68531:CDS |
AAAGGAGTAATGGGGAATTA+GGG | 0.373435 | 3.4:-54197327 | MS.gene68531:CDS |
GAAATTTGATATGTTAATGT+TGG | 0.381296 | 3.4:-54197392 | MS.gene68531:CDS |
GAATAATCAATTCAACGGTT+GGG | 0.385433 | 3.4:-54196485 | MS.gene68531:CDS |
GGGGAGAACGGTAATGGGCT+TGG | 0.387547 | 3.4:-54196391 | MS.gene68531:CDS |
CACCTGAAGCTCCAATTAGA+TGG | 0.391146 | 3.4:-54194338 | MS.gene68531:CDS |
CTTTGCTTCCCTGTCCCCTA+AGG | 0.392415 | 3.4:+54195405 | None:intergenic |
TGGAAGGTGTAGTGGTGAAG+TGG | 0.405749 | 3.4:-54197302 | MS.gene68531:CDS |
TGATATGTTAATGTTGGAAA+AGG | 0.406052 | 3.4:-54197386 | MS.gene68531:CDS |
AAGAGGAGCTCATGAAGGTT+GGG | 0.408722 | 3.4:-54196411 | MS.gene68531:CDS |
TTTGAGGTGTTGAAGAATAG+AGG | 0.410883 | 3.4:-54196640 | MS.gene68531:CDS |
GAAAGGAGATTACGAAGCTT+GGG | 0.410918 | 3.4:-54196681 | MS.gene68531:CDS |
TTGGTGAAGTTTAGGGAGAA+TGG | 0.411192 | 3.4:-54195259 | MS.gene68531:CDS |
AAACCTAACCAAAATGGTAT+TGG | 0.415009 | 3.4:-54194303 | MS.gene68531:CDS |
AAGAATAGAGGGGTTGGTAA+TGG | 0.418976 | 3.4:-54196304 | MS.gene68531:CDS |
GAATAGTCGATTCAAGAGTT+GGG | 0.423182 | 3.4:-54196755 | MS.gene68531:CDS |
TTTGAGGGGTTGAAGAATAG+AGG | 0.425954 | 3.4:-54196316 | MS.gene68531:CDS |
GGCCAAGACTCTAGTGGTTA+GGG | 0.427558 | 3.4:-54196557 | MS.gene68531:CDS |
AGTAATGGGGAATTAGGGTT+TGG | 0.430269 | 3.4:-54197322 | MS.gene68531:CDS |
AGAATAATCAATTCAACGGT+TGG | 0.430618 | 3.4:-54196486 | MS.gene68531:CDS |
GGAAAAGGTTAGTGTTGAAA+TGG | 0.431642 | 3.4:-54197371 | MS.gene68531:CDS |
AACAGATTTGTTGGTGAACC+AGG | 0.436737 | 3.4:-54196223 | MS.gene68531:CDS |
AATGTTATGAAAGCTGAATT+GGG | 0.437327 | 3.4:-54195211 | MS.gene68531:CDS |
CTCCGGCTCCGCCAATCGTC+CGG | 0.439929 | 3.4:+54197574 | None:intergenic |
AGAATAGTCGATTCAAGAGT+TGG | 0.440860 | 3.4:-54196756 | MS.gene68531:CDS |
AGCAAACCTTGCAACAAGAT+TGG | 0.440924 | 3.4:-54195476 | MS.gene68531:CDS |
TCAACAGTGAAGAGCCCTTA+GGG | 0.445007 | 3.4:-54195420 | MS.gene68531:CDS |
AAGGTTGGGGAGAACGGTAA+TGG | 0.446865 | 3.4:-54196397 | MS.gene68531:CDS |
CTTGAGGTGGTGAAGAATAG+TGG | 0.446970 | 3.4:-54195172 | MS.gene68531:CDS |
TGAAGAGAGTAAAGGAAGAA+AGG | 0.448784 | 3.4:-54197345 | MS.gene68531:CDS |
ACTAGAGCATCTTTCTTGCC+TGG | 0.449381 | 3.4:+54196205 | None:intergenic |
GTAAAGGAAGAAAGGAGTAA+TGG | 0.457933 | 3.4:-54197337 | MS.gene68531:CDS |
AGCTCCGAGATACGTTTATA+AGG | 0.459337 | 3.4:-54197513 | MS.gene68531:CDS |
GGAAAGGAGATTACGAAGCT+TGG | 0.464408 | 3.4:-54196682 | MS.gene68531:CDS |
AGGTGAAAATGTCAAGGATT+CGG | 0.464930 | 3.4:-54195110 | MS.gene68531:CDS |
AAGTTTAGGGAGAATGGTAA+TGG | 0.467320 | 3.4:-54195253 | MS.gene68531:CDS |
TTGAAGAAACCCTAATTGCT+AGG | 0.467341 | 3.4:-54197474 | MS.gene68531:CDS |
AAAATTGACAGCGGTGTTTG+TGG | 0.475932 | 3.4:-54194243 | MS.gene68531:CDS |
AAGAATAGTGGGGATGCTGA+TGG | 0.478448 | 3.4:-54195160 | MS.gene68531:CDS |
GTGAAGAGCCCTTAGGGGAC+AGG | 0.479138 | 3.4:-54195414 | MS.gene68531:CDS |
GTGAAGGAAAAGAGAGGGGT+TGG | 0.479471 | 3.4:-54197193 | MS.gene68531:intron |
GAATAGAGGGGTTGGTAATG+GGG | 0.480773 | 3.4:-54196302 | MS.gene68531:CDS |
AGACGAGACGCTAGTGGTTA+GGG | 0.483500 | 3.4:-54196827 | MS.gene68531:CDS |
TTGAGGTGGTGAAGAATAGT+GGG | 0.483995 | 3.4:-54195171 | MS.gene68531:CDS |
GCTGCAGTTGGGCACGGAAA+AGG | 0.485830 | 3.4:-54196343 | MS.gene68531:CDS |
AGTTTAGGGAGAATGGTAAT+GGG | 0.486829 | 3.4:-54195252 | MS.gene68531:CDS |
GGAAGGTGTAGTGGTGAAGT+GGG | 0.491846 | 3.4:-54197301 | MS.gene68531:CDS |
AGAATAGTGGGGATGCTGAT+GGG | 0.493401 | 3.4:-54195159 | MS.gene68531:CDS |
AGGTTGGGGAGAACGGTAAT+GGG | 0.494688 | 3.4:-54196396 | MS.gene68531:CDS |
TTGAGGGGTTGAAGAATAGA+GGG | 0.495709 | 3.4:-54196315 | MS.gene68531:CDS |
CTCATGAAGGTTGGGGAGAA+CGG | 0.497507 | 3.4:-54196403 | MS.gene68531:CDS |
TTGAGGTGTTGAAGAATAGA+GGG | 0.497604 | 3.4:-54196639 | MS.gene68531:CDS |
TTCCCTAACCACTAGAGTCT+TGG | 0.500205 | 3.4:+54196555 | None:intergenic |
GACCGGACGATTGGCGGAGC+CGG | 0.501183 | 3.4:-54197576 | MS.gene68531:CDS |
TGAAGACAGTCACGGGAGAA+AGG | 0.502692 | 3.4:-54196438 | MS.gene68531:CDS |
TTTGCTTCCCTGTCCCCTAA+GGG | 0.502950 | 3.4:+54195406 | None:intergenic |
GAAGAGGAGCTCATGAAGGT+TGG | 0.503328 | 3.4:-54196412 | MS.gene68531:CDS |
GAATAGTGGGGATGCTGATG+GGG | 0.506762 | 3.4:-54195158 | MS.gene68531:CDS |
AATGGGACTGACCTAGAAGA+TGG | 0.512067 | 3.4:-54195235 | MS.gene68531:CDS |
GTTGAGGCACATAAAGTCAA+TGG | 0.515823 | 3.4:-54195301 | MS.gene68531:CDS |
TTCGGCTGAAAGGAAGAGAT+TGG | 0.519928 | 3.4:-54195092 | MS.gene68531:CDS |
CTGACCTTATAAACGTATCT+CGG | 0.522430 | 3.4:+54197509 | None:intergenic |
AAACCCACTCATATAATGTC+AGG | 0.524127 | 3.4:-54195451 | MS.gene68531:CDS |
CACGGAAAAGGAAAATTTGA+GGG | 0.526168 | 3.4:-54196331 | MS.gene68531:CDS |
AATAATCAATTCAACGGTTG+GGG | 0.529678 | 3.4:-54196484 | MS.gene68531:CDS |
ATCAACAGTGAAGAGCCCTT+AGG | 0.531966 | 3.4:-54195421 | MS.gene68531:CDS |
AGCACGATGTTGAACCAAGC+TGG | 0.533134 | 3.4:-54194219 | MS.gene68531:CDS |
TTAGGGTTTGGAAGGTGTAG+TGG | 0.533992 | 3.4:-54197310 | MS.gene68531:CDS |
TTGAAAGCTGCAGTTGGGCA+CGG | 0.535337 | 3.4:-54196349 | MS.gene68531:CDS |
CACATAAAGTCAATGGAGAA+TGG | 0.536193 | 3.4:-54195294 | MS.gene68531:CDS |
AAGCAACTGAAGAGAAGTTG+AGG | 0.536823 | 3.4:-54196789 | MS.gene68531:CDS |
CTCAATGTATCGCTCCAGCT+TGG | 0.539188 | 3.4:+54194205 | None:intergenic |
GCTAACCACTCTTGAAGTCC+AGG | 0.539468 | 3.4:-54194274 | MS.gene68531:CDS |
GTTTAGCCAATCTTGTTGCA+AGG | 0.541391 | 3.4:+54195470 | None:intergenic |
GGAGCCGGAGTAATCTGAAC+CGG | 0.541434 | 3.4:-54197561 | MS.gene68531:CDS |
GGAAGCAATGTTGAAGGCAG+TGG | 0.542195 | 3.4:-54196536 | MS.gene68531:CDS |
CAATTAGGGTTTCTTCAACA+AGG | 0.543284 | 3.4:+54197479 | None:intergenic |
CGAGCTCCGAGATAGTCTTC+CGG | 0.546210 | 3.4:+54197542 | None:intergenic |
TGAAGAAACCCTAATTGCTA+GGG | 0.547195 | 3.4:-54197473 | MS.gene68531:CDS |
ATCAATTCAACGGTTGGGGA+AGG | 0.547375 | 3.4:-54196480 | MS.gene68531:CDS |
GCTGAAAGGAAGAGATTGGC+TGG | 0.548763 | 3.4:-54195088 | MS.gene68531:CDS |
ATTGAGGTGAACACGGTCAC+AGG | 0.549420 | 3.4:-54196715 | MS.gene68531:CDS |
TGGGGAGGCTTGTGCTGTTG+CGG | 0.549478 | 3.4:-54196284 | MS.gene68531:CDS |
ATGGGGAATTAGGGTTTGGA+AGG | 0.550708 | 3.4:-54197318 | MS.gene68531:CDS |
AATGGAGCTGAAGAGAGTAA+AGG | 0.551886 | 3.4:-54197353 | MS.gene68531:CDS |
TGAAGAGCCCTTAGGGGACA+GGG | 0.551919 | 3.4:-54195413 | MS.gene68531:CDS |
GGTTAGGGAAGCAATGTTGA+AGG | 0.552460 | 3.4:-54196542 | MS.gene68531:CDS |
GAAGGCAGTGGCTGAAGAAA+AGG | 0.552924 | 3.4:-54196524 | MS.gene68531:CDS |
AGAAGATTAGGTTACTGCAC+AGG | 0.554303 | 3.4:-54195363 | MS.gene68531:CDS |
TGAAGTGGGGAAGAAGAGAA+AGG | 0.557805 | 3.4:-54197287 | MS.gene68531:intron |
CCACTAGCGTCTCGTCTACA+CGG | 0.558048 | 3.4:+54196833 | None:intergenic |
TTTGGTGAAGGAAAAGAGAG+GGG | 0.558869 | 3.4:-54197197 | MS.gene68531:intron |
CAAGCTGGAGCGATACATTG+AGG | 0.561013 | 3.4:-54194204 | None:intergenic |
TGAGGTGTTGAAGAATAGAG+GGG | 0.561820 | 3.4:-54196638 | MS.gene68531:CDS |
GCTTGGTTTAAATGATAGAG+AGG | 0.561857 | 3.4:-54196374 | MS.gene68531:CDS |
TTACCTGACATTATATGAGT+GGG | 0.565461 | 3.4:+54195448 | None:intergenic |
AGAATGGTGTGGTGAGGAGT+TGG | 0.567948 | 3.4:-54195278 | MS.gene68531:CDS |
AACGGTTCGAAATTGGGCCG+CGG | 0.568883 | 3.4:+54197604 | None:intergenic |
AGCAACTGAAGAGAAGTTGA+GGG | 0.571040 | 3.4:-54196788 | MS.gene68531:CDS |
ACTGGATGTTGGAAAGGTCG+AGG | 0.571508 | 3.4:-54196260 | MS.gene68531:CDS |
AGAGGAGCTCATGAAGGTTG+GGG | 0.572542 | 3.4:-54196410 | MS.gene68531:CDS |
ATGTCAAGGATTCGGCTGAA+AGG | 0.573571 | 3.4:-54195102 | MS.gene68531:CDS |
GCTGTTGCGGAACTGGATGT+TGG | 0.573739 | 3.4:-54196271 | MS.gene68531:CDS |
GGTGAACAGAGCAAGAAAGA+TGG | 0.576411 | 3.4:-54197172 | MS.gene68531:CDS |
ATTACCTGACATTATATGAG+TGG | 0.577684 | 3.4:+54195447 | None:intergenic |
CAAGAGAATAATCAATTCAA+CGG | 0.578823 | 3.4:-54196490 | MS.gene68531:CDS |
TAACCAAAATGGTATTGGAC+CGG | 0.579693 | 3.4:-54194298 | MS.gene68531:CDS |
CACAGGAGGAAGGCATGGAA+AGG | 0.580422 | 3.4:-54196698 | MS.gene68531:CDS |
ACGGTCACAGGAGGAAGGCA+TGG | 0.583130 | 3.4:-54196703 | MS.gene68531:CDS |
GGGTTGAAGAATAGAGGGGT+TGG | 0.584413 | 3.4:-54196310 | MS.gene68531:CDS |
CACGGGAGAAAGGCGTGAAG+AGG | 0.589443 | 3.4:-54196428 | MS.gene68531:CDS |
TAGTGGGGATGCTGATGGGG+AGG | 0.590354 | 3.4:-54195155 | MS.gene68531:CDS |
GTGTTGAAGAATAGAGGGGT+TGG | 0.593465 | 3.4:-54196634 | MS.gene68531:intron |
TCTGAACCGGAAGACTATCT+CGG | 0.593902 | 3.4:-54197548 | MS.gene68531:CDS |
GGTGAACCAAGCAAGAAAGA+TGG | 0.597959 | 3.4:-54195067 | MS.gene68531:CDS |
GGACAGGGAAGCAAAGCTGA+AGG | 0.599361 | 3.4:-54195398 | MS.gene68531:CDS |
TGAGGGGTTGAAGAATAGAG+GGG | 0.604683 | 3.4:-54196314 | MS.gene68531:CDS |
TGCTGCCTGGACTTCAAGAG+TGG | 0.606394 | 3.4:+54194269 | None:intergenic |
ATGGGACTGACCTAGAAGAT+GGG | 0.609063 | 3.4:-54195234 | MS.gene68531:CDS |
GCGTGAAGAGGAGCTCATGA+AGG | 0.611699 | 3.4:-54196416 | MS.gene68531:CDS |
GAATGAAAGACACGAGCTTG+AGG | 0.613350 | 3.4:-54195188 | MS.gene68531:CDS |
ACTAGAAGGTGAAAACGTTG+AGG | 0.614135 | 3.4:-54196584 | MS.gene68531:intron |
TATAAACGTATCTCGGAGCT+CGG | 0.614929 | 3.4:+54197516 | None:intergenic |
CCGTGTAGACGAGACGCTAG+TGG | 0.616681 | 3.4:-54196833 | MS.gene68531:CDS |
GTTGAGGTGAAGACAGTCAC+GGG | 0.618797 | 3.4:-54196445 | MS.gene68531:CDS |
AAAGGAAGAAAGGAGTAATG+GGG | 0.619788 | 3.4:-54197335 | MS.gene68531:CDS |
GCACGGAAAAGGAAAATTTG+AGG | 0.622379 | 3.4:-54196332 | MS.gene68531:CDS |
AATAGTCGATTCAAGAGTTG+GGG | 0.622504 | 3.4:-54196754 | MS.gene68531:CDS |
TGAACACGGTCACAGGAGGA+AGG | 0.623523 | 3.4:-54196708 | MS.gene68531:CDS |
ACTCAAAGGTGAAAATGTCA+AGG | 0.630430 | 3.4:-54195116 | MS.gene68531:CDS |
ATGTTATGAAAGCTGAATTG+GGG | 0.633232 | 3.4:-54195210 | MS.gene68531:CDS |
CAGGGAAGCAAAGCTGAAGG+AGG | 0.633850 | 3.4:-54195395 | MS.gene68531:CDS |
TGCGGAACTGGATGTTGGAA+AGG | 0.634014 | 3.4:-54196266 | MS.gene68531:CDS |
ACTTCAAGAGTGGTTAGCAC+CGG | 0.635036 | 3.4:+54194279 | None:intergenic |
CAGTGGCTGAAGAAAAGGTG+AGG | 0.636215 | 3.4:-54196519 | MS.gene68531:CDS |
TAGAGGGGTTGGTAATGGGG+AGG | 0.638423 | 3.4:-54196299 | MS.gene68531:CDS |
CCAAGCAAGAAAGATGGTCA+AGG | 0.644057 | 3.4:-54195061 | MS.gene68531:CDS |
CAGAGCAAGAAAGATGGCGT+AGG | 0.646304 | 3.4:-54197166 | MS.gene68531:CDS |
TCTAATTGGAGCTTCAGGTG+TGG | 0.648685 | 3.4:+54194341 | None:intergenic |
GAGGTGAACACGGTCACAGG+AGG | 0.650216 | 3.4:-54196712 | MS.gene68531:CDS |
TCTTCCGGTTCAGATTACTC+CGG | 0.652628 | 3.4:+54197557 | None:intergenic |
GAAGGTGTAGTGGTGAAGTG+GGG | 0.652743 | 3.4:-54197300 | MS.gene68531:CDS |
TGAAAGACACGAGCTTGAGG+TGG | 0.654957 | 3.4:-54195185 | MS.gene68531:CDS |
AGTGGCTGAAGAAAAGGTGA+GGG | 0.661191 | 3.4:-54196518 | MS.gene68531:CDS |
CAATGGAGAATGGTGTGGTG+AGG | 0.663327 | 3.4:-54195284 | MS.gene68531:CDS |
AAAGGAGATTACGAAGCTTG+GGG | 0.665450 | 3.4:-54196680 | MS.gene68531:CDS |
GGTTGAGGTGAAGACAGTCA+CGG | 0.672238 | 3.4:-54196446 | MS.gene68531:CDS |
CAACAGTGAAGAGCCCTTAG+GGG | 0.692780 | 3.4:-54195419 | MS.gene68531:CDS |
GCTTCACGCTCATGGAACCG+CGG | 0.699483 | 3.4:-54197621 | None:intergenic |
ACGGAAAAGGAAAATTTGAG+GGG | 0.700748 | 3.4:-54196330 | MS.gene68531:CDS |
ATTTAATTGCAGATACTGAG+CGG | 0.710150 | 3.4:-54195522 | MS.gene68531:intron |
TGTGCTGTTAGTGAACTCAA+AGG | 0.715632 | 3.4:-54195130 | MS.gene68531:CDS |
AAAGTCAATGGAGAATGGTG+TGG | 0.722219 | 3.4:-54195289 | MS.gene68531:CDS |
TGAGGTGGTGAAGAATAGTG+GGG | 0.725161 | 3.4:-54195170 | MS.gene68531:CDS |
GCAGCAACTAAAATTGACAG+CGG | 0.755781 | 3.4:-54194252 | MS.gene68531:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAACTTATCTTTTTATAT+AGG | + | chr3.4:54196982-54197001 | None:intergenic | 10.0% |
!! | AATGTTAGAAATTAATCTTA+AGG | - | chr3.4:54197067-54197086 | MS.gene68531:intron | 15.0% |
!! | AATTAGTAGTTAAGTTATAT+TGG | - | chr3.4:54194906-54194925 | MS.gene68531:intron | 15.0% |
!! | ATGTTAGAAATTAATCTTAA+GGG | - | chr3.4:54197068-54197087 | MS.gene68531:intron | 15.0% |
!! | ATTAGTAGTTAAGTTATATT+GGG | - | chr3.4:54194907-54194926 | MS.gene68531:intron | 15.0% |
!!! | GTTTATCAAAATATCTTTTT+GGG | + | chr3.4:54197253-54197272 | None:intergenic | 15.0% |
!!! | TTTTTTATGTTTAAACCAAT+TGG | - | chr3.4:54194936-54194955 | MS.gene68531:intron | 15.0% |
!! | GAAAAAACTATTGAAGTTAT+GGG | - | chr3.4:54196866-54196885 | MS.gene68531:intron | 20.0% |
!! | GAAATTTGATATGTTAATGT+TGG | - | chr3.4:54194424-54194443 | MS.gene68531:intron | 20.0% |
!! | GAATGAAAAATACAAATTTG+AGG | - | chr3.4:54195160-54195179 | MS.gene68531:CDS | 20.0% |
!! | TATTATTGAGTATGTATGTT+TGG | - | chr3.4:54194786-54194805 | MS.gene68531:intron | 20.0% |
!! | TGAAAAAACTATTGAAGTTA+TGG | - | chr3.4:54196865-54196884 | MS.gene68531:intron | 20.0% |
!! | TGATAATTCTTCATCAAATA+CGG | + | chr3.4:54194861-54194880 | None:intergenic | 20.0% |
!! | TTGATGTAACTAGTAATATA+AGG | - | chr3.4:54196089-54196108 | MS.gene68531:intron | 20.0% |
!!! | AAAATTGGCAATATTTTACA+AGG | - | chr3.4:54196201-54196220 | MS.gene68531:CDS | 20.0% |
!!! | AAATTGGCAATATTTTACAA+GGG | - | chr3.4:54196202-54196221 | MS.gene68531:CDS | 20.0% |
!!! | GGTTTATCAAAATATCTTTT+TGG | + | chr3.4:54197254-54197273 | None:intergenic | 20.0% |
!!! | TTATCTTTTTATATAGGACT+AGG | + | chr3.4:54196976-54196995 | None:intergenic | 20.0% |
!!! | TTATGATCAAGATAATTTGT+TGG | - | chr3.4:54195734-54195753 | MS.gene68531:intron | 20.0% |
! | AACTTCAAATCAAACCAAAA+TGG | - | chr3.4:54197359-54197378 | MS.gene68531:CDS | 25.0% |
! | AAGAATCAATTTAAGAGCTT+TGG | - | chr3.4:54196476-54196495 | MS.gene68531:CDS | 25.0% |
! | AATAATGTGTTAGAGTATAG+TGG | + | chr3.4:54197099-54197118 | None:intergenic | 25.0% |
! | AATGTTATGAAAGCTGAATT+GGG | - | chr3.4:54196605-54196624 | MS.gene68531:intron | 25.0% |
! | ACATTAAAGAATGCATACAT+AGG | + | chr3.4:54195674-54195693 | None:intergenic | 25.0% |
! | AGTGAATTTGATGGAAAAAA+TGG | - | chr3.4:54195871-54195890 | MS.gene68531:intron | 25.0% |
! | CAAGAGAATAATCAATTCAA+CGG | - | chr3.4:54195326-54195345 | MS.gene68531:CDS | 25.0% |
! | CAATTAATTACTTCCAGAAT+AGG | + | chr3.4:54196253-54196272 | None:intergenic | 25.0% |
! | CACATTATTAGGATATTCTA+AGG | - | chr3.4:54197110-54197129 | MS.gene68531:intron | 25.0% |
! | CTATACTCTAACACATTATT+AGG | - | chr3.4:54197099-54197118 | MS.gene68531:intron | 25.0% |
! | GAGAATACTATGTAGTTTAT+TGG | - | chr3.4:54196031-54196050 | MS.gene68531:intron | 25.0% |
! | GATAATTCTTCATCAAATAC+GGG | + | chr3.4:54194860-54194879 | None:intergenic | 25.0% |
! | TGATATGTTAATGTTGGAAA+AGG | - | chr3.4:54194430-54194449 | MS.gene68531:intron | 25.0% |
!! | AGTAGAAATCTAAGTTTTTG+TGG | - | chr3.4:54196150-54196169 | MS.gene68531:intron | 25.0% |
!! | TTCTGGAAGTAATTAATTGT+TGG | - | chr3.4:54196254-54196273 | MS.gene68531:CDS | 25.0% |
!!! | AAGATATTTTGATAAACCAG+TGG | - | chr3.4:54197256-54197275 | MS.gene68531:intron | 25.0% |
!!! | AATACATGATTTTGATGTTG+AGG | - | chr3.4:54196499-54196518 | MS.gene68531:CDS | 25.0% |
!!! | TTTTGGGTTTTGATTAAGTT+GGG | + | chr3.4:54197237-54197256 | None:intergenic | 25.0% |
!!! | TTTTTGGGTTTTGATTAAGT+TGG | + | chr3.4:54197238-54197257 | None:intergenic | 25.0% |
AAACCTAACCAAAATGGTAT+TGG | - | chr3.4:54197513-54197532 | MS.gene68531:CDS | 30.0% | |
AAGAATAGTTGTAGAATGGA+TGG | - | chr3.4:54195824-54195843 | MS.gene68531:intron | 30.0% | |
AAGAGGTAAAACCATCTAAT+TGG | + | chr3.4:54197492-54197511 | None:intergenic | 30.0% | |
AATAATCAATTCAACGGTTG+GGG | - | chr3.4:54195332-54195351 | MS.gene68531:CDS | 30.0% | |
ACTAAACACTAACCTCTATT+TGG | - | chr3.4:54196936-54196955 | MS.gene68531:intron | 30.0% | |
AGAATAATCAATTCAACGGT+TGG | - | chr3.4:54195330-54195349 | MS.gene68531:CDS | 30.0% | |
AGGAAATTGAAGAGAAGATT+AGG | - | chr3.4:54196441-54196460 | MS.gene68531:CDS | 30.0% | |
AGTCAAGAATAGTTGTAGAA+TGG | - | chr3.4:54195820-54195839 | MS.gene68531:intron | 30.0% | |
ATACTATGTAGTTTATTGGC+AGG | - | chr3.4:54196035-54196054 | MS.gene68531:intron | 30.0% | |
ATGTTATGAAAGCTGAATTG+GGG | - | chr3.4:54196606-54196625 | MS.gene68531:intron | 30.0% | |
ATTACCTGACATTATATGAG+TGG | + | chr3.4:54196372-54196391 | None:intergenic | 30.0% | |
ATTGAGTATGTATGTTTGGT+TGG | - | chr3.4:54194790-54194809 | MS.gene68531:intron | 30.0% | |
ATTTAATTGCAGATACTGAG+CGG | - | chr3.4:54196294-54196313 | MS.gene68531:CDS | 30.0% | |
ATTTCAAAATACATGAGTCG+AGG | + | chr3.4:54196065-54196084 | None:intergenic | 30.0% | |
GAAATATGCAAACTAATCCT+AGG | - | chr3.4:54197025-54197044 | MS.gene68531:intron | 30.0% | |
GAATAATCAATTCAACGGTT+GGG | - | chr3.4:54195331-54195350 | MS.gene68531:CDS | 30.0% | |
GAATGTTATGAAAGCTGAAT+TGG | - | chr3.4:54196604-54196623 | MS.gene68531:intron | 30.0% | |
GCTAACTATATGTATTCACT+TGG | - | chr3.4:54196811-54196830 | MS.gene68531:CDS | 30.0% | |
TAAAGGAAGAAAGGAGTAAT+GGG | - | chr3.4:54194480-54194499 | MS.gene68531:intron | 30.0% | |
TACTATGTAGTTTATTGGCA+GGG | - | chr3.4:54196036-54196055 | MS.gene68531:intron | 30.0% | |
TATGTCACAATTACGATTAG+TGG | - | chr3.4:54195797-54195816 | MS.gene68531:intron | 30.0% | |
TATTCTGTTGTTGAACTAGA+AGG | - | chr3.4:54195218-54195237 | MS.gene68531:CDS | 30.0% | |
TTACCTGACATTATATGAGT+GGG | + | chr3.4:54196371-54196390 | None:intergenic | 30.0% | |
TTCTCTAACCAAACTGAAAA+AGG | + | chr3.4:54196016-54196035 | None:intergenic | 30.0% | |
TTTGAAGATATGATACCTTC+TGG | + | chr3.4:54197421-54197440 | None:intergenic | 30.0% | |
! | ACCAACAAATCTGTTCTTTT+TGG | + | chr3.4:54195588-54195607 | None:intergenic | 30.0% |
! | CACTTAATTTTCATGAACGT+GGG | - | chr3.4:54196178-54196197 | MS.gene68531:intron | 30.0% |
! | GAAATCTAAGTTTTTGTGGA+TGG | - | chr3.4:54196154-54196173 | MS.gene68531:intron | 30.0% |
!!! | ACAACTGTTTTTGTTTGGTT+TGG | + | chr3.4:54197444-54197463 | None:intergenic | 30.0% |
!!! | GCAATTTTTGTTGTTTCTTC+AGG | + | chr3.4:54195699-54195718 | None:intergenic | 30.0% |
AAACCAATTGGAATTACTCC+AGG | - | chr3.4:54194948-54194967 | MS.gene68531:intron | 35.0% | |
AAACCCACTCATATAATGTC+AGG | - | chr3.4:54196365-54196384 | MS.gene68531:CDS | 35.0% | |
AAAGGAAGAAAGGAGTAATG+GGG | - | chr3.4:54194481-54194500 | MS.gene68531:intron | 35.0% | |
AACCAATTGGAATTACTCCA+GGG | - | chr3.4:54194949-54194968 | MS.gene68531:intron | 35.0% | |
AACTTTGTTGCACAAAACTC+AGG | - | chr3.4:54195911-54195930 | MS.gene68531:intron | 35.0% | |
AAGATATGATACCTTCTGGT+TGG | + | chr3.4:54197417-54197436 | None:intergenic | 35.0% | |
AAGTTTAGGGAGAATGGTAA+TGG | - | chr3.4:54196563-54196582 | MS.gene68531:CDS | 35.0% | |
ACGGAAAAGGAAAATTTGAG+GGG | - | chr3.4:54195486-54195505 | MS.gene68531:CDS | 35.0% | |
ACTCAAAGGTGAAAATGTCA+AGG | - | chr3.4:54196700-54196719 | MS.gene68531:CDS | 35.0% | |
AGGTGAAAATGTCAAGGATT+CGG | - | chr3.4:54196706-54196725 | MS.gene68531:CDS | 35.0% | |
AGTTTAGGGAGAATGGTAAT+GGG | - | chr3.4:54196564-54196583 | MS.gene68531:CDS | 35.0% | |
ATGTGCTTGTATTTGCCTTA+TGG | - | chr3.4:54195935-54195954 | MS.gene68531:intron | 35.0% | |
CAATTAGGGTTTCTTCAACA+AGG | + | chr3.4:54194340-54194359 | None:intergenic | 35.0% | |
CACATAAAGTCAATGGAGAA+TGG | - | chr3.4:54196522-54196541 | MS.gene68531:CDS | 35.0% | |
CACGGAAAAGGAAAATTTGA+GGG | - | chr3.4:54195485-54195504 | MS.gene68531:CDS | 35.0% | |
CCACGTTCATGAAAATTAAG+TGG | + | chr3.4:54196180-54196199 | None:intergenic | 35.0% | |
CGAGCCAATGTTAATTACAA+CGG | - | chr3.4:54197386-54197405 | MS.gene68531:CDS | 35.0% | |
CTCTTCAAACCTAACCAAAA+TGG | - | chr3.4:54197507-54197526 | MS.gene68531:CDS | 35.0% | |
CTGACCTTATAAACGTATCT+CGG | + | chr3.4:54194310-54194329 | None:intergenic | 35.0% | |
GCCAAAAAGAACAGATTTGT+TGG | - | chr3.4:54195584-54195603 | MS.gene68531:intron | 35.0% | |
GCTAGGGAAGAAAAGTTAAA+AGG | - | chr3.4:54194359-54194378 | MS.gene68531:CDS | 35.0% | |
GCTTAAAGCTAACAAAGCTT+TGG | + | chr3.4:54197176-54197195 | None:intergenic | 35.0% | |
GCTTCCGTTGTAATTAACAT+TGG | + | chr3.4:54197393-54197412 | None:intergenic | 35.0% | |
GCTTGGTTTAAATGATAGAG+AGG | - | chr3.4:54195442-54195461 | MS.gene68531:CDS | 35.0% | |
GTAAAGGAAGAAAGGAGTAA+TGG | - | chr3.4:54194479-54194498 | MS.gene68531:intron | 35.0% | |
TCATAACATTCCCATCTTCT+AGG | + | chr3.4:54196595-54196614 | None:intergenic | 35.0% | |
TCTAATATCTCGCCAAATAG+AGG | + | chr3.4:54196951-54196970 | None:intergenic | 35.0% | |
TGAAGAAACCCTAATTGCTA+GGG | - | chr3.4:54194343-54194362 | MS.gene68531:CDS | 35.0% | |
TGAAGAGAGTAAAGGAAGAA+AGG | - | chr3.4:54194471-54194490 | MS.gene68531:intron | 35.0% | |
TTCATTCTTAAGCTACTGCT+GGG | + | chr3.4:54197325-54197344 | None:intergenic | 35.0% | |
TTGAAGAAACCCTAATTGCT+AGG | - | chr3.4:54194342-54194361 | MS.gene68531:CDS | 35.0% | |
TTTCATGAACGTGGGAAAAT+TGG | - | chr3.4:54196186-54196205 | MS.gene68531:intron | 35.0% | |
! | AAAGAGTCTTGTCCTTTACT+TGG | - | chr3.4:54195960-54195979 | MS.gene68531:intron | 35.0% |
! | AAAGATGCTCTAGTTTCTTC+TGG | - | chr3.4:54195620-54195639 | MS.gene68531:intron | 35.0% |
! | AAAGGAGTAATGGGGAATTA+GGG | - | chr3.4:54194489-54194508 | MS.gene68531:intron | 35.0% |
! | AATAGTCGATTCAAGAGTTG+GGG | - | chr3.4:54195062-54195081 | MS.gene68531:CDS | 35.0% |
! | ACTTTTCTTCCCTAGCAATT+AGG | + | chr3.4:54194355-54194374 | None:intergenic | 35.0% |
! | AGAATAGTCGATTCAAGAGT+TGG | - | chr3.4:54195060-54195079 | MS.gene68531:CDS | 35.0% |
! | AGATATGATACCTTCTGGTT+GGG | + | chr3.4:54197416-54197435 | None:intergenic | 35.0% |
! | CCACTTAATTTTCATGAACG+TGG | - | chr3.4:54196177-54196196 | MS.gene68531:intron | 35.0% |
! | CTTTTCTTCCCTAGCAATTA+GGG | + | chr3.4:54194354-54194373 | None:intergenic | 35.0% |
! | GAATAGTCGATTCAAGAGTT+GGG | - | chr3.4:54195061-54195080 | MS.gene68531:CDS | 35.0% |
! | GGAAAAGGTTAGTGTTGAAA+TGG | - | chr3.4:54194445-54194464 | MS.gene68531:intron | 35.0% |
! | TAACCAAAATGGTATTGGAC+CGG | - | chr3.4:54197518-54197537 | MS.gene68531:CDS | 35.0% |
! | TAAGGCTCAGCATTATGTTT+TGG | - | chr3.4:54196107-54196126 | MS.gene68531:intron | 35.0% |
! | TTTTGGTGAAGGAAAAGAGA+GGG | - | chr3.4:54194618-54194637 | MS.gene68531:intron | 35.0% |
!! | AAGAAGAGAAAGGTTGGTAA+TGG | - | chr3.4:54194539-54194558 | MS.gene68531:intron | 35.0% |
!! | AGAAGAGAAAGGTTGGTAAT+GGG | - | chr3.4:54194540-54194559 | MS.gene68531:intron | 35.0% |
!! | GGTGTTATACTTTTCGACTA+AGG | + | chr3.4:54197216-54197235 | None:intergenic | 35.0% |
!! | TTGAGGTGTTGAAGAATAGA+GGG | - | chr3.4:54195177-54195196 | MS.gene68531:CDS | 35.0% |
!! | TTTGAGGTGTTGAAGAATAG+AGG | - | chr3.4:54195176-54195195 | MS.gene68531:CDS | 35.0% |
!! | TTTTGAAGGTGGAAGAGTTT+TGG | - | chr3.4:54194601-54194620 | MS.gene68531:intron | 35.0% |
!!! | AATGGATGGTGTTTTAACCA+TGG | - | chr3.4:54195838-54195857 | MS.gene68531:intron | 35.0% |
!!! | CATGCTCAATTTTGAGATTG+AGG | - | chr3.4:54195085-54195104 | MS.gene68531:CDS | 35.0% |
!!! | CATTTTGGTTAGGTTTGAAG+AGG | + | chr3.4:54197509-54197528 | None:intergenic | 35.0% |
!!! | GTGACACAACTGTTTTTGTT+TGG | + | chr3.4:54197449-54197468 | None:intergenic | 35.0% |
!!! | TACAAGTGCCTTTTTCAGTT+TGG | - | chr3.4:54196005-54196024 | MS.gene68531:intron | 35.0% |
!!! | TTTTGAGATTGAGGTGAACA+CGG | - | chr3.4:54195094-54195113 | MS.gene68531:CDS | 35.0% |
AAAATTGACAGCGGTGTTTG+TGG | - | chr3.4:54197573-54197592 | MS.gene68531:CDS | 40.0% | |
AAAGATGGTCAAGGTTCTTC+AGG | - | chr3.4:54196764-54196783 | MS.gene68531:CDS | 40.0% | |
AAAGGAGATTACGAAGCTTG+GGG | - | chr3.4:54195136-54195155 | MS.gene68531:CDS | 40.0% | |
AAAGTCAATGGAGAATGGTG+TGG | - | chr3.4:54196527-54196546 | MS.gene68531:CDS | 40.0% | |
AACCATCTAATTGGAGCTTC+AGG | + | chr3.4:54197483-54197502 | None:intergenic | 40.0% | |
AAGCAACTGAAGAGAAGTTG+AGG | - | chr3.4:54195027-54195046 | MS.gene68531:intron | 40.0% | |
AATGGAGCTGAAGAGAGTAA+AGG | - | chr3.4:54194463-54194482 | MS.gene68531:intron | 40.0% | |
ACCAATTGGAATTACTCCAG+GGG | - | chr3.4:54194950-54194969 | MS.gene68531:intron | 40.0% | |
ACTAGAAGGTGAAAACGTTG+AGG | - | chr3.4:54195232-54195251 | MS.gene68531:CDS | 40.0% | |
AGAAGATTAGGTTACTGCAC+AGG | - | chr3.4:54196453-54196472 | MS.gene68531:CDS | 40.0% | |
AGATGGTGCAGTGAATTTGA+TGG | - | chr3.4:54195862-54195881 | MS.gene68531:intron | 40.0% | |
AGCAAACCTTGCAACAAGAT+TGG | - | chr3.4:54196340-54196359 | MS.gene68531:CDS | 40.0% | |
AGCAACTGAAGAGAAGTTGA+GGG | - | chr3.4:54195028-54195047 | MS.gene68531:intron | 40.0% | |
AGCTCCGAGATACGTTTATA+AGG | - | chr3.4:54194303-54194322 | MS.gene68531:CDS | 40.0% | |
ATTGTTCTTGTGTTCACCAC+TGG | + | chr3.4:54197275-54197294 | None:intergenic | 40.0% | |
CCGAAAAACGGTTCGAAATT+GGG | + | chr3.4:54194221-54194240 | None:intergenic | 40.0% | |
CTGCTCTTCATTTCCTATTC+TGG | - | chr3.4:54196237-54196256 | MS.gene68531:CDS | 40.0% | |
GAAAGGAGATTACGAAGCTT+GGG | - | chr3.4:54195135-54195154 | MS.gene68531:CDS | 40.0% | |
GAAGTCAATGTGCCAAGTAA+AGG | + | chr3.4:54195975-54195994 | None:intergenic | 40.0% | |
GACAAGACTCTTTCACCATA+AGG | + | chr3.4:54195953-54195972 | None:intergenic | 40.0% | |
GCACGGAAAAGGAAAATTTG+AGG | - | chr3.4:54195484-54195503 | MS.gene68531:CDS | 40.0% | |
GCAGCAACTAAAATTGACAG+CGG | - | chr3.4:54197564-54197583 | MS.gene68531:CDS | 40.0% | |
GCAGTAGCTTAAGAATGAAC+TGG | - | chr3.4:54197326-54197345 | MS.gene68531:CDS | 40.0% | |
GTTCATTCTTAAGCTACTGC+TGG | + | chr3.4:54197326-54197345 | None:intergenic | 40.0% | |
GTTGAGGCACATAAAGTCAA+TGG | - | chr3.4:54196515-54196534 | MS.gene68531:CDS | 40.0% | |
GTTTAGCCAATCTTGTTGCA+AGG | + | chr3.4:54196349-54196368 | None:intergenic | 40.0% | |
TATAAACGTATCTCGGAGCT+CGG | + | chr3.4:54194303-54194322 | None:intergenic | 40.0% | |
TCCGAAAAACGGTTCGAAAT+TGG | + | chr3.4:54194222-54194241 | None:intergenic | 40.0% | |
TGCAAACTAATCCTAGGAGA+TGG | - | chr3.4:54197031-54197050 | MS.gene68531:intron | 40.0% | |
TGTGCTCTGTCATGACATTA+AGG | - | chr3.4:54195767-54195786 | MS.gene68531:intron | 40.0% | |
TTGAGGGGTTGAAGAATAGA+GGG | - | chr3.4:54195501-54195520 | MS.gene68531:CDS | 40.0% | |
TTGAGGTGGTGAAGAATAGT+GGG | - | chr3.4:54196645-54196664 | MS.gene68531:CDS | 40.0% | |
TTGGTGAAGTTTAGGGAGAA+TGG | - | chr3.4:54196557-54196576 | MS.gene68531:CDS | 40.0% | |
TTTGAGGGGTTGAAGAATAG+AGG | - | chr3.4:54195500-54195519 | MS.gene68531:CDS | 40.0% | |
TTTGGTGAAGGAAAAGAGAG+GGG | - | chr3.4:54194619-54194638 | MS.gene68531:intron | 40.0% | |
! | AGGTGAAAACGTTGAGGTTT+TGG | - | chr3.4:54195238-54195257 | MS.gene68531:CDS | 40.0% |
! | AGTAATGGGGAATTAGGGTT+TGG | - | chr3.4:54194494-54194513 | MS.gene68531:intron | 40.0% |
! | GAAAGGAGTAATGGGGAATT+AGG | - | chr3.4:54194488-54194507 | MS.gene68531:intron | 40.0% |
! | GATATGATACCTTCTGGTTG+GGG | + | chr3.4:54197415-54197434 | None:intergenic | 40.0% |
! | TGCTCTAGTTTCTTCTGGTA+TGG | - | chr3.4:54195625-54195644 | MS.gene68531:intron | 40.0% |
! | TGTGCTGTTAGTGAACTCAA+AGG | - | chr3.4:54196686-54196705 | MS.gene68531:CDS | 40.0% |
!! | AACAAAGCTTTGGCTTGAGA+GGG | + | chr3.4:54197166-54197185 | None:intergenic | 40.0% |
!! | AACAGATTTGTTGGTGAACC+AGG | - | chr3.4:54195593-54195612 | MS.gene68531:intron | 40.0% |
!! | AAGAATAGAGGGGTTGGTAA+TGG | - | chr3.4:54195188-54195207 | MS.gene68531:CDS | 40.0% |
!! | AGAATAGAGGGGTTGGTAAT+GGG | - | chr3.4:54195189-54195208 | MS.gene68531:CDS | 40.0% |
!! | CCCAATTTCGAACCGTTTTT+CGG | - | chr3.4:54194218-54194237 | MS.gene68531:CDS | 40.0% |
!! | GAAGAGAAAGGTTGGTAATG+GGG | - | chr3.4:54194541-54194560 | MS.gene68531:intron | 40.0% |
!! | GTTTTGGTGAAGGAAAAGAG+AGG | - | chr3.4:54194617-54194636 | MS.gene68531:intron | 40.0% |
!! | TAACAAAGCTTTGGCTTGAG+AGG | + | chr3.4:54197167-54197186 | None:intergenic | 40.0% |
!! | TGAGGAGTTGGTGAAGTTTA+GGG | - | chr3.4:54196550-54196569 | MS.gene68531:CDS | 40.0% |
!! | TGAGGTGTTGAAGAATAGAG+GGG | - | chr3.4:54195178-54195197 | MS.gene68531:CDS | 40.0% |
!!! | AAGGCTCAATTTTGAGGTTG+AGG | - | chr3.4:54195355-54195374 | MS.gene68531:CDS | 40.0% |
!!! | AGGTTTTGAAAGCTGCAGTT+GGG | - | chr3.4:54195462-54195481 | MS.gene68531:CDS | 40.0% |
!!! | GGTCCAATACCATTTTGGTT+AGG | + | chr3.4:54197519-54197538 | None:intergenic | 40.0% |
!!! | TGTCAATTTTAGTTGCTGCC+TGG | + | chr3.4:54197563-54197582 | None:intergenic | 40.0% |
AAGAGGAGCTCATGAAGGTT+GGG | - | chr3.4:54195405-54195424 | MS.gene68531:CDS | 45.0% | |
AATGGGACTGACCTAGAAGA+TGG | - | chr3.4:54196581-54196600 | MS.gene68531:intron | 45.0% | |
ACACGGTCAAAATTATCCCC+TGG | + | chr3.4:54194969-54194988 | None:intergenic | 45.0% | |
ACTTCAAGAGTGGTTAGCAC+CGG | + | chr3.4:54197540-54197559 | None:intergenic | 45.0% | |
AGTGGCTGAAGAAAAGGTGA+GGG | - | chr3.4:54195298-54195317 | MS.gene68531:CDS | 45.0% | |
ATCAACAGTGAAGAGCCCTT+AGG | - | chr3.4:54196395-54196414 | MS.gene68531:CDS | 45.0% | |
ATCAATTCAACGGTTGGGGA+AGG | - | chr3.4:54195336-54195355 | MS.gene68531:CDS | 45.0% | |
ATGGGACTGACCTAGAAGAT+GGG | - | chr3.4:54196582-54196601 | MS.gene68531:intron | 45.0% | |
ATGGGGAATTAGGGTTTGGA+AGG | - | chr3.4:54194498-54194517 | MS.gene68531:intron | 45.0% | |
ATGTCAAGGATTCGGCTGAA+AGG | - | chr3.4:54196714-54196733 | MS.gene68531:CDS | 45.0% | |
CACCTGAAGCTCCAATTAGA+TGG | - | chr3.4:54197478-54197497 | MS.gene68531:CDS | 45.0% | |
CCAAGCAAGAAAGATGGTCA+AGG | - | chr3.4:54196755-54196774 | MS.gene68531:CDS | 45.0% | |
CCTTGACCATCTTTCTTGCT+TGG | + | chr3.4:54196758-54196777 | None:intergenic | 45.0% | |
CGTATCATAGACCATCTCCT+AGG | + | chr3.4:54197045-54197064 | None:intergenic | 45.0% | |
CTTGAGGTGGTGAAGAATAG+TGG | - | chr3.4:54196644-54196663 | MS.gene68531:CDS | 45.0% | |
GAATGAAAGACACGAGCTTG+AGG | - | chr3.4:54196628-54196647 | MS.gene68531:intron | 45.0% | |
GGAAAGGAGATTACGAAGCT+TGG | - | chr3.4:54195134-54195153 | MS.gene68531:CDS | 45.0% | |
GGTGAACAGAGCAAGAAAGA+TGG | - | chr3.4:54194644-54194663 | MS.gene68531:intron | 45.0% | |
GGTGAACCAAGCAAGAAAGA+TGG | - | chr3.4:54196749-54196768 | MS.gene68531:CDS | 45.0% | |
GGTTAGGGAAGCAATGTTGA+AGG | - | chr3.4:54195004-54195023 | MS.gene68531:intron | 45.0% | |
GTGTTGAAGAATAGAGGGGT+TGG | - | chr3.4:54195182-54195201 | MS.gene68531:CDS | 45.0% | |
TCAACAGTGAAGAGCCCTTA+GGG | - | chr3.4:54196396-54196415 | MS.gene68531:CDS | 45.0% | |
TCCCCTGGAGTAATTCCAAT+TGG | + | chr3.4:54194954-54194973 | None:intergenic | 45.0% | |
TCTAATTGGAGCTTCAGGTG+TGG | + | chr3.4:54197478-54197497 | None:intergenic | 45.0% | |
TCTGAACCGGAAGACTATCT+CGG | - | chr3.4:54194268-54194287 | MS.gene68531:CDS | 45.0% | |
TCTTCCGGTTCAGATTACTC+CGG | + | chr3.4:54194262-54194281 | None:intergenic | 45.0% | |
TGAAGTGGGGAAGAAGAGAA+AGG | - | chr3.4:54194529-54194548 | MS.gene68531:intron | 45.0% | |
TGAGGGGTTGAAGAATAGAG+GGG | - | chr3.4:54195502-54195521 | MS.gene68531:CDS | 45.0% | |
TGAGGTGGTGAAGAATAGTG+GGG | - | chr3.4:54196646-54196665 | MS.gene68531:CDS | 45.0% | |
TGGTCAAGGTTCTTCAGGTA+TGG | - | chr3.4:54196769-54196788 | MS.gene68531:CDS | 45.0% | |
TTCCCTAACCACTAGAGTCT+TGG | + | chr3.4:54195264-54195283 | None:intergenic | 45.0% | |
TTCGGCTGAAAGGAAGAGAT+TGG | - | chr3.4:54196724-54196743 | MS.gene68531:CDS | 45.0% | |
! | AAGAATAGTGGGGATGCTGA+TGG | - | chr3.4:54196656-54196675 | MS.gene68531:CDS | 45.0% |
! | ACTAGAGCATCTTTCTTGCC+TGG | + | chr3.4:54195614-54195633 | None:intergenic | 45.0% |
! | AGAATAGTGGGGATGCTGAT+GGG | - | chr3.4:54196657-54196676 | MS.gene68531:CDS | 45.0% |
! | TGTTGGAAAGGTCGAGGTTT+TGG | - | chr3.4:54195562-54195581 | MS.gene68531:intron | 45.0% |
! | TTAGGGTTTGGAAGGTGTAG+TGG | - | chr3.4:54194506-54194525 | MS.gene68531:intron | 45.0% |
! | TTGGGGAAGGCTCAATTTTG+AGG | - | chr3.4:54195349-54195368 | MS.gene68531:CDS | 45.0% |
!! | ACAAAGCTTTGGCTTGAGAG+GGG | + | chr3.4:54197165-54197184 | None:intergenic | 45.0% |
!! | AGGTGGAAGAGTTTTGGTGA+AGG | - | chr3.4:54194607-54194626 | MS.gene68531:intron | 45.0% |
!! | GAATAGAGGGGTTGGTAATG+GGG | - | chr3.4:54195190-54195209 | MS.gene68531:CDS | 45.0% |
!! | GTGAGGAGTTGGTGAAGTTT+AGG | - | chr3.4:54196549-54196568 | MS.gene68531:CDS | 45.0% |
!! | TTTCGAACCGTTTTTCGGAC+CGG | - | chr3.4:54194223-54194242 | MS.gene68531:CDS | 45.0% |
!!! | CATTGGCTCGAAAGCCATTT+TGG | + | chr3.4:54197376-54197395 | None:intergenic | 45.0% |
!!! | GAGGTTTTGAAAGCTGCAGT+TGG | - | chr3.4:54195461-54195480 | MS.gene68531:CDS | 45.0% |
!!! | GGTGTTTTAACCATGGCAGA+TGG | - | chr3.4:54195845-54195864 | MS.gene68531:intron | 45.0% |
AAAGATGGCGTAGGTGCTTC+AGG | - | chr3.4:54194659-54194678 | MS.gene68531:intron | 50.0% | |
AAGGTTGGGGAGAACGGTAA+TGG | - | chr3.4:54195419-54195438 | MS.gene68531:CDS | 50.0% | |
ACTGGATGTTGGAAAGGTCG+AGG | - | chr3.4:54195556-54195575 | MS.gene68531:intron | 50.0% | |
AGAATGGTGTGGTGAGGAGT+TGG | - | chr3.4:54196538-54196557 | MS.gene68531:CDS | 50.0% | |
AGACGAGACGCTAGTGGTTA+GGG | - | chr3.4:54194989-54195008 | MS.gene68531:intron | 50.0% | |
AGAGGAGCTCATGAAGGTTG+GGG | - | chr3.4:54195406-54195425 | MS.gene68531:CDS | 50.0% | |
AGCACGATGTTGAACCAAGC+TGG | - | chr3.4:54197597-54197616 | MS.gene68531:CDS | 50.0% | |
AGGTTGGGGAGAACGGTAAT+GGG | - | chr3.4:54195420-54195439 | MS.gene68531:CDS | 50.0% | |
ATTCACTGCACCATCTGCCA+TGG | + | chr3.4:54195858-54195877 | None:intergenic | 50.0% | |
ATTGAGGTGAACACGGTCAC+AGG | - | chr3.4:54195101-54195120 | MS.gene68531:CDS | 50.0% | |
CAACAGTGAAGAGCCCTTAG+GGG | - | chr3.4:54196397-54196416 | MS.gene68531:CDS | 50.0% | |
CAATCGTCCGGTCCGAAAAA+CGG | + | chr3.4:54194233-54194252 | None:intergenic | 50.0% | |
CAATGGAGAATGGTGTGGTG+AGG | - | chr3.4:54196532-54196551 | MS.gene68531:CDS | 50.0% | |
CAGAGCAAGAAAGATGGCGT+AGG | - | chr3.4:54194650-54194669 | MS.gene68531:intron | 50.0% | |
CAGTGGCTGAAGAAAAGGTG+AGG | - | chr3.4:54195297-54195316 | MS.gene68531:CDS | 50.0% | |
CTCATGAAGGTTGGGGAGAA+CGG | - | chr3.4:54195413-54195432 | MS.gene68531:CDS | 50.0% | |
GAAGAGGAGCTCATGAAGGT+TGG | - | chr3.4:54195404-54195423 | MS.gene68531:CDS | 50.0% | |
GAAGGCAGTGGCTGAAGAAA+AGG | - | chr3.4:54195292-54195311 | MS.gene68531:CDS | 50.0% | |
GCTAACCACTCTTGAAGTCC+AGG | - | chr3.4:54197542-54197561 | MS.gene68531:CDS | 50.0% | |
GCTGAAAGGAAGAGATTGGC+TGG | - | chr3.4:54196728-54196747 | MS.gene68531:CDS | 50.0% | |
GGAAGCAATGTTGAAGGCAG+TGG | - | chr3.4:54195280-54195299 | MS.gene68531:CDS | 50.0% | |
GGCCAAGACTCTAGTGGTTA+GGG | - | chr3.4:54195259-54195278 | MS.gene68531:CDS | 50.0% | |
GGGTTGAAGAATAGAGGGGT+TGG | - | chr3.4:54195506-54195525 | MS.gene68531:CDS | 50.0% | |
GGTTGAGGTGAAGACAGTCA+CGG | - | chr3.4:54195370-54195389 | MS.gene68531:CDS | 50.0% | |
GTGAAGGAAAAGAGAGGGGT+TGG | - | chr3.4:54194623-54194642 | MS.gene68531:intron | 50.0% | |
GTGGGGAAGAAGAGAAAGGT+TGG | - | chr3.4:54194533-54194552 | MS.gene68531:intron | 50.0% | |
GTTGAGGTGAAGACAGTCAC+GGG | - | chr3.4:54195371-54195390 | MS.gene68531:CDS | 50.0% | |
TAGACGAGACGCTAGTGGTT+AGG | - | chr3.4:54194988-54195007 | MS.gene68531:intron | 50.0% | |
TGAAAGACACGAGCTTGAGG+TGG | - | chr3.4:54196631-54196650 | MS.gene68531:intron | 50.0% | |
TGAAGACAGTCACGGGAGAA+AGG | - | chr3.4:54195378-54195397 | MS.gene68531:CDS | 50.0% | |
TGCGGAACTGGATGTTGGAA+AGG | - | chr3.4:54195550-54195569 | MS.gene68531:intron | 50.0% | |
TGGCCAAGACTCTAGTGGTT+AGG | - | chr3.4:54195258-54195277 | MS.gene68531:CDS | 50.0% | |
TTGAAAGCTGCAGTTGGGCA+CGG | - | chr3.4:54195467-54195486 | MS.gene68531:CDS | 50.0% | |
TTTGCTTCCCTGTCCCCTAA+GGG | + | chr3.4:54196413-54196432 | None:intergenic | 50.0% | |
! | GAAGGTGTAGTGGTGAAGTG+GGG | - | chr3.4:54194516-54194535 | MS.gene68531:intron | 50.0% |
! | GAATAGTGGGGATGCTGATG+GGG | - | chr3.4:54196658-54196677 | MS.gene68531:CDS | 50.0% |
! | GGAAGGTGTAGTGGTGAAGT+GGG | - | chr3.4:54194515-54194534 | MS.gene68531:intron | 50.0% |
! | TGGAAGGTGTAGTGGTGAAG+TGG | - | chr3.4:54194514-54194533 | MS.gene68531:intron | 50.0% |
!! | GCACCGGTCCAATACCATTT+TGG | + | chr3.4:54197524-54197543 | None:intergenic | 50.0% |
!! | GGTGGTGGTGATTTTGAAGG+TGG | - | chr3.4:54194590-54194609 | MS.gene68531:intron | 50.0% |
!! | GGTTTTGGCCAAGACTCTAG+TGG | - | chr3.4:54195253-54195272 | MS.gene68531:CDS | 50.0% |
!! | GTTGGTAATGGGGTTTCGTG+TGG | - | chr3.4:54194551-54194570 | MS.gene68531:intron | 50.0% |
!!! | GGTGGTGGTGGTGATTTTGA+AGG | - | chr3.4:54194587-54194606 | MS.gene68531:intron | 50.0% |
!!! | GTTTCGTGTGGTGGTGGTTT+TGG | - | chr3.4:54194563-54194582 | MS.gene68531:intron | 50.0% |
AACGGTTCGAAATTGGGCCG+CGG | + | chr3.4:54194215-54194234 | None:intergenic | 55.0% | |
AATGGGGTTTCGTGTGGTGG+TGG | - | chr3.4:54194557-54194576 | MS.gene68531:intron | 55.0% | |
CAGGGAAGCAAAGCTGAAGG+AGG | - | chr3.4:54196421-54196440 | MS.gene68531:CDS | 55.0% | |
CCACTAGCGTCTCGTCTACA+CGG | + | chr3.4:54194986-54195005 | None:intergenic | 55.0% | |
CGAGCTCCGAGATAGTCTTC+CGG | + | chr3.4:54194277-54194296 | None:intergenic | 55.0% | |
CTTTGCTTCCCTGTCCCCTA+AGG | + | chr3.4:54196414-54196433 | None:intergenic | 55.0% | |
GCGTGAAGAGGAGCTCATGA+AGG | - | chr3.4:54195400-54195419 | MS.gene68531:CDS | 55.0% | |
GCTGTTGCGGAACTGGATGT+TGG | - | chr3.4:54195545-54195564 | MS.gene68531:intron | 55.0% | |
GGACAGGGAAGCAAAGCTGA+AGG | - | chr3.4:54196418-54196437 | MS.gene68531:CDS | 55.0% | |
GGAGCCGGAGTAATCTGAAC+CGG | - | chr3.4:54194255-54194274 | MS.gene68531:CDS | 55.0% | |
TGAACACGGTCACAGGAGGA+AGG | - | chr3.4:54195108-54195127 | MS.gene68531:CDS | 55.0% | |
TGAAGAGCCCTTAGGGGACA+GGG | - | chr3.4:54196403-54196422 | MS.gene68531:CDS | 55.0% | |
TGCTGCCTGGACTTCAAGAG+TGG | + | chr3.4:54197550-54197569 | None:intergenic | 55.0% | |
TGGCGTAGGTGCTTCAGGTA+TGG | - | chr3.4:54194664-54194683 | MS.gene68531:intron | 55.0% | |
! | CACAGGAGGAAGGCATGGAA+AGG | - | chr3.4:54195118-54195137 | MS.gene68531:CDS | 55.0% |
! | TTTTCGGACCGGACGATTGG+CGG | - | chr3.4:54194234-54194253 | MS.gene68531:CDS | 55.0% |
!! | CGTTTTTCGGACCGGACGAT+TGG | - | chr3.4:54194231-54194250 | MS.gene68531:CDS | 55.0% |
!! | GGTAATGGGGTTTCGTGTGG+TGG | - | chr3.4:54194554-54194573 | MS.gene68531:intron | 55.0% |
!! | TAGAGGGGTTGGTAATGGGG+AGG | - | chr3.4:54195193-54195212 | MS.gene68531:CDS | 55.0% |
!!! | TCGTGTGGTGGTGGTTTTGG+TGG | - | chr3.4:54194566-54194585 | MS.gene68531:intron | 55.0% |
!!! | TGTGGTGGTGGTTTTGGTGG+TGG | - | chr3.4:54194569-54194588 | MS.gene68531:intron | 55.0% |
ACGGTCACAGGAGGAAGGCA+TGG | - | chr3.4:54195113-54195132 | MS.gene68531:CDS | 60.0% | |
CAACGGAAGCCCCAACCAGA+AGG | - | chr3.4:54197403-54197422 | MS.gene68531:CDS | 60.0% | |
CCGTGTAGACGAGACGCTAG+TGG | - | chr3.4:54194983-54195002 | MS.gene68531:intron | 60.0% | |
GAGGTGAACACGGTCACAGG+AGG | - | chr3.4:54195104-54195123 | MS.gene68531:CDS | 60.0% | |
GCTGCAGTTGGGCACGGAAA+AGG | - | chr3.4:54195473-54195492 | MS.gene68531:CDS | 60.0% | |
GTGAAGAGCCCTTAGGGGAC+AGG | - | chr3.4:54196402-54196421 | MS.gene68531:CDS | 60.0% | |
TAGTGGGGATGCTGATGGGG+AGG | - | chr3.4:54196661-54196680 | MS.gene68531:CDS | 60.0% | |
! | CACGGGAGAAAGGCGTGAAG+AGG | - | chr3.4:54195388-54195407 | MS.gene68531:CDS | 60.0% |
! | GGCTTGTGCTGTTGCGGAAC+TGG | - | chr3.4:54195538-54195557 | MS.gene68531:intron | 60.0% |
! | TGGGGAGGCTTGTGCTGTTG+CGG | - | chr3.4:54195532-54195551 | MS.gene68531:intron | 60.0% |
!! | GGGGAGAACGGTAATGGGCT+TGG | - | chr3.4:54195425-54195444 | MS.gene68531:CDS | 60.0% |
!!! | GGTGGTGGTTTTGGTGGTGG+TGG | - | chr3.4:54194572-54194591 | MS.gene68531:intron | 60.0% |
!!! | GGTGGTTTTGGTGGTGGTGG+TGG | - | chr3.4:54194575-54194594 | MS.gene68531:intron | 60.0% |
CTCCGGCTCCGCCAATCGTC+CGG | + | chr3.4:54194245-54194264 | None:intergenic | 70.0% | |
GACCGGACGATTGGCGGAGC+CGG | - | chr3.4:54194240-54194259 | MS.gene68531:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 54194206 | 54197632 | 54194206 | ID=MS.gene68531 |
chr3.4 | mRNA | 54194206 | 54197632 | 54194206 | ID=MS.gene68531.t1;Parent=MS.gene68531 |
chr3.4 | exon | 54197288 | 54197632 | 54197288 | ID=MS.gene68531.t1.exon1;Parent=MS.gene68531.t1 |
chr3.4 | CDS | 54197288 | 54197632 | 54197288 | ID=cds.MS.gene68531.t1;Parent=MS.gene68531.t1 |
chr3.4 | exon | 54197158 | 54197209 | 54197158 | ID=MS.gene68531.t1.exon2;Parent=MS.gene68531.t1 |
chr3.4 | CDS | 54197158 | 54197209 | 54197158 | ID=cds.MS.gene68531.t1;Parent=MS.gene68531.t1 |
chr3.4 | exon | 54196635 | 54196868 | 54196635 | ID=MS.gene68531.t1.exon3;Parent=MS.gene68531.t1 |
chr3.4 | CDS | 54196635 | 54196868 | 54196635 | ID=cds.MS.gene68531.t1;Parent=MS.gene68531.t1 |
chr3.4 | exon | 54196197 | 54196598 | 54196197 | ID=MS.gene68531.t1.exon4;Parent=MS.gene68531.t1 |
chr3.4 | CDS | 54196197 | 54196598 | 54196197 | ID=cds.MS.gene68531.t1;Parent=MS.gene68531.t1 |
chr3.4 | exon | 54195053 | 54195532 | 54195053 | ID=MS.gene68531.t1.exon5;Parent=MS.gene68531.t1 |
chr3.4 | CDS | 54195053 | 54195532 | 54195053 | ID=cds.MS.gene68531.t1;Parent=MS.gene68531.t1 |
chr3.4 | exon | 54194206 | 54194378 | 54194206 | ID=MS.gene68531.t1.exon6;Parent=MS.gene68531.t1 |
chr3.4 | CDS | 54194206 | 54194378 | 54194206 | ID=cds.MS.gene68531.t1;Parent=MS.gene68531.t1 |
Gene Sequence |
Protein sequence |