AlfalfaGEDB | MS.gene69102

M. sativa cultivar XinJiangDaYe / MS.gene69102

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69102.t1	XP_003602096.2	81.6	38	7	0	84	121	59	96	7.60E-07	63.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69102.t1	G7J5J3	81.6	38	7	0	84	121	59	96	5.5e-07	63.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049531	MS.gene69102	0.813267	2.79E-51	-1.69E-46
MS.gene049853	MS.gene69102	0.815437	9.25E-52	-1.69E-46
MS.gene052447	MS.gene69102	0.829965	3.83E-55	-1.69E-46
MS.gene054484	MS.gene69102	0.80751	4.88E-50	-1.69E-46
MS.gene055017	MS.gene69102	0.824936	6.16E-54	-1.69E-46
MS.gene055056	MS.gene69102	0.813453	2.54E-51	-1.69E-46
MS.gene055058	MS.gene69102	0.804714	1.89E-49	-1.69E-46
MS.gene056174	MS.gene69102	0.801544	8.56E-49	-1.69E-46
MS.gene058294	MS.gene69102	0.807065	6.06E-50	-1.69E-46
MS.gene058515	MS.gene69102	0.829624	4.64E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69102.t1	MTR_3g089100	88.542	96	10	1	27	121	1	96	7.16e-31	115
MS.gene69102.t1	MTR_3g089100	88.542	96	10	1	27	121	1	96	7.45e-31	115
MS.gene69102.t1	MTR_3g089100	88.542	96	10	1	27	121	1	96	7.90e-31	115

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 37 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCATAACTTCTTCTTCTT+TGG	0.231300	3.4:+96158860	None:intergenic
AACGAACCATCAGCAATCGC+GGG	0.588091	3.4:+96158494	None:intergenic
AAGACCCATCTCATGCACAA+AGG	0.676403	3.4:-96159585	None:intergenic
AAGTCTCTAATCTCACTGAC+CGG	0.529132	3.4:-96159557	MS.gene69102:CDS
AGAAGAAGGAGGTTTGTCAT+CGG	0.590143	3.4:+96158767	None:intergenic
AGAAGATGAAGGTCGTTTAC+CGG	0.381174	3.4:+96158791	None:intergenic
AGCCAAAGAAGAAGAAGTTA+TGG	0.472596	3.4:-96158862	MS.gene69102:CDS
AGTCTCTAATCTCACTGACC+GGG	0.584559	3.4:-96159556	MS.gene69102:CDS
ATTCTTTCTCAGCCTGATAA+TGG	0.358493	3.4:-96158650	MS.gene69102:intron
CAAGAACCGTCTGTCGATCC+CGG	0.476593	3.4:-96158590	MS.gene69102:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCATAACTTCTTCTTCTT+TGG	+	chr3.4:96159206-96159225	None:intergenic	30.0%
AAGAGAAATGAAGAAAAGAG+TGG	+	chr3.4:96159150-96159169	None:intergenic	30.0%
GAAAAAGAAAATTGAAAGGC+AGG	-	chr3.4:96159091-96159110	MS.gene69102:intron	30.0%
TGCCAAAGAATCAATACTTA+GGG	+	chr3.4:96158918-96158937	None:intergenic	30.0%
AATGAAGAAAAGAGTGGAGA+AGG	+	chr3.4:96159144-96159163	None:intergenic	35.0%
AGCCAAAGAAGAAGAAGTTA+TGG	-	chr3.4:96159201-96159220	MS.gene69102:intron	35.0%
ATCAGAGACCAAGTCAAAAA+TGG	+	chr3.4:96158957-96158976	None:intergenic	35.0%
ATTCTTTCTCAGCCTGATAA+TGG	-	chr3.4:96159413-96159432	MS.gene69102:intron	35.0%
CCAAAGAATCAATACTTAGG+GGG	+	chr3.4:96158916-96158935	None:intergenic	35.0%
CTGCCAAAGAATCAATACTT+AGG	+	chr3.4:96158919-96158938	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	96158490	96159595	96158490	ID=MS.gene69102
chr3.4	mRNA	96158490	96159595	96158490	ID=MS.gene69102.t1;Parent=MS.gene69102
chr3.4	exon	96159535	96159595	96159535	ID=MS.gene69102.t1.exon1;Parent=MS.gene69102.t1
chr3.4	CDS	96159535	96159595	96159535	ID=cds.MS.gene69102.t1;Parent=MS.gene69102.t1
chr3.4	exon	96158746	96158882	96158746	ID=MS.gene69102.t1.exon2;Parent=MS.gene69102.t1
chr3.4	CDS	96158746	96158882	96158746	ID=cds.MS.gene69102.t1;Parent=MS.gene69102.t1
chr3.4	exon	96158490	96158660	96158490	ID=MS.gene69102.t1.exon3;Parent=MS.gene69102.t1
chr3.4	CDS	96158490	96158660	96158490	ID=cds.MS.gene69102.t1;Parent=MS.gene69102.t1

Gene Sequence

>MS.gene69102

ATGCACAAAGGAAGAAAAGTCTCTAATCTCACTGACCGGGGAGTTGCCAGTACCAAACGGGGTACCCTCCTTTCAGACTCATGGAGAACAGAGTTAAAATCCCCCGCAACACACCAAACATCCCCACCAAAAGAGCCTTTGAGAAGAATTAACTTTTCCCACATCTCCCTCTTCTCAGCAAGAGAGCATTTGGAATACACGTTCACAACAAAACAGTGACTCCTCAAAACCCCCCACTCAAGACACACACCCACAAAACCCGGCCCCCAGAGAGCATTTGAGATCATGGTTTTTATTTAGTAGTATTTAAGTTGAAATAAATTTCCTTTCTATTTATTATATATTGGCTTAATTGCACTTTTGGCCCTCTAACTTTTCAAAAGTTGCGGTTATGGCCCCCTAACTAATTTAAATACAAAATAGCCCCCTAAGTATTGATTCTTTGGCAGTTTTGGCCCCCTGGTCCATTTTTGACTTGGTCTCTGATGACGTGGCATCCAGACCCCTTGTGTTTGGTGCCACGTGGATATTTTTTTTAAAGCTTGTTGATATTTTGAAATTGGAGAAATTAAAAAAAAAAGGAAGAAATTAAAAAAAAATGGAAAAAGAAAATTGAAAGGCAGGTCACATGACTTCTTCTTCTCCATTGTTCCTTCTCCACTCTTTTCTTCATTTCTCTTTTCTCTTCTCTTTCTCTGTGTTTATCGTTGAAGCCAAAGAAGAAGAAGTTATGGTTTCAACGAGACACAACAGTGGTGGATCTTTCCCCAACAACAACAACTCCGGTAAACGACCTTCATCTTCTTCCGATGACAAACCTCCTTCTTCTCCTTCATCTAAACGCCAAAAGGTTTTTCTCCAATCCGTTACGCTTTTTTCTCTCTTTCATCTTTATTCGATTCAATTTCTTAATTTTGATTTTCATTCTTTCTCAGCCTGATAATGGTGTTGCTTCATCGGAGAAACCACCGGAGAATTCAAATCAAGAACCGTCTGTCGATCCCGGAAAATGTGCTCAACCTAATGCTCAGATCGATGAACCTGTAGCAGCTGCTAATGATGATAAACCTGATGCAACTCCCGCGATTGCTGATGGTTCGTTATAA

Protein sequence

>MS.gene69102.t1

MHKGRKVSNLTDRGVASTKRAKEEEVMVSTRHNSGGSFPNNNNSGKRPSSSSDDKPPSSPSSKRQKPDNGVASSEKPPENSNQEPSVDPGKCAQPNAQIDEPVAAANDDKPDATPAIADGSL