Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69772.t1 | XP_013461166.1 | 95 | 358 | 18 | 0 | 1 | 358 | 1 | 358 | 1.20E-174 | 622.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69772.t1 | Q6L8G0 | 53.9 | 356 | 149 | 3 | 8 | 358 | 8 | 353 | 4.4e-96 | 352.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69772.t1 | B7FI47 | 95.0 | 358 | 18 | 0 | 1 | 358 | 1 | 358 | 9.0e-175 | 622.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69772 | MS.gene009810 | PPI |
| MS.gene69772 | MS.gene54167 | PPI |
| MS.gene69772 | MS.gene50197 | PPI |
| MS.gene69772 | MS.gene038972 | PPI |
| MS.gene69772 | MS.gene56999 | PPI |
| MS.gene69772 | MS.gene066193 | PPI |
| MS.gene69772 | MS.gene62494 | PPI |
| MS.gene69772 | MS.gene045723 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69772.t1 | MTR_3g081580 | 96.648 | 358 | 12 | 0 | 1 | 358 | 1 | 358 | 0.0 | 702 |
| MS.gene69772.t1 | MTR_3g081640 | 86.538 | 364 | 40 | 4 | 1 | 358 | 1 | 361 | 0.0 | 608 |
| MS.gene69772.t1 | MTR_3g082050 | 83.844 | 359 | 47 | 3 | 1 | 358 | 1 | 349 | 0.0 | 572 |
| MS.gene69772.t1 | MTR_3g082050 | 85.337 | 341 | 43 | 2 | 19 | 358 | 43 | 377 | 0.0 | 559 |
| MS.gene69772.t1 | MTR_3g082050 | 84.104 | 346 | 47 | 3 | 14 | 358 | 34 | 372 | 0.0 | 552 |
| MS.gene69772.t1 | MTR_3g081690 | 82.941 | 340 | 47 | 3 | 1 | 339 | 1 | 330 | 0.0 | 534 |
| MS.gene69772.t1 | MTR_3g081690 | 83.180 | 327 | 47 | 3 | 14 | 339 | 34 | 353 | 0.0 | 515 |
| MS.gene69772.t1 | MTR_2g064310 | 59.770 | 348 | 130 | 4 | 16 | 358 | 16 | 358 | 6.13e-141 | 404 |
| MS.gene69772.t1 | MTR_3g081690 | 78.733 | 221 | 40 | 2 | 120 | 339 | 25 | 239 | 6.54e-115 | 334 |
| MS.gene69772.t1 | MTR_4g083570 | 50.000 | 348 | 163 | 4 | 11 | 358 | 14 | 350 | 2.51e-112 | 331 |
| MS.gene69772.t1 | MTR_8g105030 | 49.435 | 354 | 161 | 5 | 6 | 352 | 5 | 347 | 1.95e-111 | 330 |
| MS.gene69772.t1 | MTR_6g007687 | 50.435 | 345 | 153 | 4 | 15 | 355 | 14 | 344 | 2.97e-111 | 328 |
| MS.gene69772.t1 | MTR_3g104400 | 48.343 | 362 | 154 | 6 | 28 | 358 | 6 | 365 | 2.12e-101 | 304 |
| MS.gene69772.t1 | MTR_3g081690 | 78.462 | 195 | 35 | 2 | 146 | 339 | 7 | 195 | 1.61e-98 | 291 |
| MS.gene69772.t1 | MTR_3g081690 | 78.974 | 195 | 34 | 2 | 146 | 339 | 29 | 217 | 3.58e-98 | 290 |
| MS.gene69772.t1 | MTR_1g016120 | 46.281 | 363 | 165 | 5 | 26 | 358 | 12 | 374 | 2.51e-96 | 291 |
| MS.gene69772.t1 | MTR_5g071990 | 41.860 | 344 | 165 | 9 | 24 | 358 | 1 | 318 | 8.91e-76 | 236 |
| MS.gene69772.t1 | MTR_3g081630 | 70.769 | 65 | 8 | 2 | 77 | 132 | 20 | 82 | 7.00e-22 | 90.5 |
| MS.gene69772.t1 | MTR_4g006710 | 45.455 | 88 | 47 | 1 | 37 | 124 | 26 | 112 | 6.10e-16 | 73.6 |
| MS.gene69772.t1 | MTR_3g073950 | 29.861 | 144 | 48 | 3 | 4 | 147 | 2 | 92 | 7.23e-14 | 68.2 |
| MS.gene69772.t1 | MTR_2g097580 | 23.708 | 329 | 206 | 13 | 37 | 357 | 44 | 335 | 3.33e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69772.t1 | AT3G12750 | 54.167 | 360 | 150 | 6 | 3 | 358 | 7 | 355 | 2.31e-133 | 385 |
| MS.gene69772.t1 | AT1G05300 | 56.587 | 334 | 142 | 3 | 26 | 358 | 29 | 360 | 6.98e-131 | 379 |
| MS.gene69772.t1 | AT2G32270 | 53.005 | 366 | 137 | 4 | 1 | 358 | 1 | 339 | 2.45e-124 | 361 |
| MS.gene69772.t1 | AT1G31260 | 50.893 | 336 | 157 | 3 | 27 | 358 | 33 | 364 | 4.93e-115 | 338 |
| MS.gene69772.t1 | AT5G62160 | 49.432 | 352 | 167 | 5 | 10 | 358 | 12 | 355 | 1.64e-108 | 322 |
| MS.gene69772.t1 | AT4G19690 | 47.458 | 354 | 162 | 4 | 11 | 358 | 12 | 347 | 6.22e-102 | 305 |
| MS.gene69772.t1 | AT2G04032 | 46.407 | 334 | 169 | 3 | 30 | 358 | 37 | 365 | 1.59e-100 | 301 |
| MS.gene69772.t1 | AT1G10970 | 45.946 | 370 | 156 | 6 | 28 | 358 | 10 | 374 | 3.27e-97 | 293 |
| MS.gene69772.t1 | AT1G10970 | 45.946 | 370 | 156 | 6 | 28 | 358 | 10 | 374 | 3.27e-97 | 293 |
| MS.gene69772.t1 | AT4G19680 | 45.042 | 353 | 182 | 5 | 9 | 358 | 7 | 350 | 5.40e-96 | 290 |
| MS.gene69772.t1 | AT1G60960 | 42.065 | 397 | 176 | 6 | 16 | 358 | 19 | 415 | 2.05e-93 | 285 |
| MS.gene69772.t1 | AT1G60960 | 41.220 | 410 | 187 | 6 | 3 | 358 | 16 | 425 | 2.08e-93 | 285 |
| MS.gene69772.t1 | AT4G33020 | 41.351 | 370 | 174 | 5 | 29 | 358 | 25 | 391 | 6.32e-87 | 268 |
| MS.gene69772.t1 | AT4G33020 | 40.922 | 347 | 164 | 4 | 50 | 358 | 1 | 344 | 3.58e-80 | 249 |
| MS.gene69772.t1 | AT2G30080 | 41.964 | 336 | 169 | 7 | 37 | 358 | 18 | 341 | 6.70e-77 | 240 |
| MS.gene69772.t1 | AT1G05300 | 51.883 | 239 | 112 | 3 | 26 | 263 | 29 | 265 | 1.29e-76 | 237 |
| MS.gene69772.t1 | AT4G19680 | 42.126 | 254 | 135 | 5 | 9 | 259 | 7 | 251 | 2.68e-58 | 189 |
| MS.gene69772.t1 | AT4G19690 | 45.455 | 143 | 73 | 2 | 11 | 148 | 12 | 154 | 3.81e-33 | 122 |
| MS.gene69772.t1 | AT1G60960 | 44.595 | 148 | 77 | 1 | 16 | 158 | 29 | 176 | 3.30e-31 | 120 |
Find 88 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGCTGCTGGTGTGATTT+TGG | 0.132983 | 3.4:+77470753 | MS.gene69772:CDS |
| GAGTCTATCAATTACAATTA+TGG | 0.222804 | 3.4:+77472706 | MS.gene69772:CDS |
| CCATATGTCTTCTGTTTCTT+CGG | 0.263664 | 3.4:+77471056 | MS.gene69772:CDS |
| GGTGTTTGTATTCCACTTCT+AGG | 0.290466 | 3.4:+77470676 | MS.gene69772:CDS |
| GTCTGGGATCTTAATCTATA+TGG | 0.302604 | 3.4:+77472847 | MS.gene69772:CDS |
| TGCAGCTACCAATGGCCTTA+TGG | 0.311481 | 3.4:-77471537 | None:intergenic |
| ATTGTTCACTCCGTTATAAT+AGG | 0.317071 | 3.4:+77471482 | MS.gene69772:CDS |
| AGTCTATCAATTACAATTAT+GGG | 0.317862 | 3.4:+77472707 | MS.gene69772:CDS |
| TTGTTTAAACGAACATCCTT+GGG | 0.333916 | 3.4:+77470828 | MS.gene69772:CDS |
| CATATGTCTTCTGTTTCTTC+GGG | 0.345408 | 3.4:+77471057 | MS.gene69772:CDS |
| CACCGCTATGGGGACTCTTA+TGG | 0.349455 | 3.4:+77470885 | MS.gene69772:CDS |
| TGCAATATATCTCTTCTATT+AGG | 0.359071 | 3.4:+77472941 | MS.gene69772:CDS |
| TCATGATCCTTCTCCACATC+TGG | 0.377311 | 3.4:-77470985 | None:intergenic |
| TTCTTTGAAGGCATGGGACT+TGG | 0.380444 | 3.4:+77471575 | MS.gene69772:CDS |
| CTATTAAAGTCGGGATTATA+AGG | 0.382734 | 3.4:-77470549 | None:intergenic |
| TTCATAATAGGTATTAGAGT+TGG | 0.383535 | 3.4:+77471454 | MS.gene69772:intron |
| CGTTATAATAGGAATTTCTC+TGG | 0.388253 | 3.4:+77471493 | MS.gene69772:CDS |
| ATATTCAATGCAGCATCGTC+TGG | 0.398905 | 3.4:+77472830 | MS.gene69772:CDS |
| ATCATCAAAGCCTTTGCTGC+TGG | 0.402978 | 3.4:+77470742 | MS.gene69772:CDS |
| TCATAATAGGTATTAGAGTT+GGG | 0.404865 | 3.4:+77471455 | MS.gene69772:intron |
| CTTGTTTAAACGAACATCCT+TGG | 0.412853 | 3.4:+77470827 | MS.gene69772:CDS |
| TGAATATTCCCTCAACGATA+AGG | 0.414646 | 3.4:-77472814 | None:intergenic |
| TTATGTCTCTTATAGCCAAA+TGG | 0.421117 | 3.4:+77472972 | MS.gene69772:CDS |
| GTGTTACCTCACTCTCAACC+TGG | 0.421472 | 3.4:-77470963 | None:intergenic |
| ATTCTAGTTGCAAGTGCAAT+TGG | 0.431771 | 3.4:+77470655 | MS.gene69772:CDS |
| CCGAAGAAACAGAAGACATA+TGG | 0.436351 | 3.4:-77471056 | None:intergenic |
| CATCCTTGGATTCATAAAAT+CGG | 0.439919 | 3.4:-77472891 | None:intergenic |
| GTAAGATTCTCAAAAGCATC+AGG | 0.451833 | 3.4:-77470799 | None:intergenic |
| TATAAACATCTAAGCCCATT+TGG | 0.452842 | 3.4:-77472987 | None:intergenic |
| CATCAGTTCTTTGAAGGCAT+GGG | 0.453138 | 3.4:+77471569 | MS.gene69772:CDS |
| GAATATTCCCTCAACGATAA+GGG | 0.453927 | 3.4:-77472813 | None:intergenic |
| TATGTCTCTTATAGCCAAAT+GGG | 0.456505 | 3.4:+77472973 | MS.gene69772:CDS |
| CTGGTGCCTTGTTAGAATAG+TGG | 0.457427 | 3.4:-77470939 | None:intergenic |
| TCATCAGTTCTTTGAAGGCA+TGG | 0.458960 | 3.4:+77471568 | MS.gene69772:CDS |
| TATCTTATAGCGAAGAGCTT+TGG | 0.461754 | 3.4:-77470617 | None:intergenic |
| ATATCTCTTCTATTAGGATC+TGG | 0.463707 | 3.4:+77472947 | MS.gene69772:CDS |
| ATGCCAATTGCAATTCCTAC+TGG | 0.465762 | 3.4:-77472752 | None:intergenic |
| ACCTCACTCTCAACCTGGGC+TGG | 0.466639 | 3.4:-77470958 | None:intergenic |
| GTGGCTATGTGCACCGCTAT+GGG | 0.473126 | 3.4:+77470874 | MS.gene69772:CDS |
| CAACAGAACTTCTTCGCCAT+AGG | 0.493431 | 3.4:+77471085 | MS.gene69772:CDS |
| AAGAGTGGTAGACTTCGATT+AGG | 0.493822 | 3.4:+77472917 | MS.gene69772:CDS |
| CGAAGAAACAGAAGACATAT+GGG | 0.494314 | 3.4:-77471055 | None:intergenic |
| TTCTAACAAGGCACCAGCCC+AGG | 0.494877 | 3.4:+77470945 | MS.gene69772:CDS |
| TGTGGCTATGTGCACCGCTA+TGG | 0.496742 | 3.4:+77470873 | MS.gene69772:CDS |
| AGGAAGCACATGAATGAAAC+CGG | 0.505115 | 3.4:-77470779 | None:intergenic |
| CAGAGAAATTCCTATTATAA+CGG | 0.509686 | 3.4:-77471492 | None:intergenic |
| ATACCTGTGTTATGACCCTA+TGG | 0.512934 | 3.4:-77471101 | None:intergenic |
| ACTTCTAGGCAAAGTGATAC+CGG | 0.520170 | 3.4:+77470690 | MS.gene69772:CDS |
| TCCTAAAACCATAAGGCCAT+TGG | 0.522500 | 3.4:+77471529 | MS.gene69772:CDS |
| CCAACCGCCCTTATCGTTGA+GGG | 0.522834 | 3.4:+77472806 | MS.gene69772:CDS |
| GTAGGAATTGCAATTGGCAT+AGG | 0.527061 | 3.4:+77472755 | MS.gene69772:CDS |
| CATTCTGCGGCTATTAAAGT+CGG | 0.528859 | 3.4:-77470559 | None:intergenic |
| CAGAGAGTCCTAAAACCATA+AGG | 0.533501 | 3.4:+77471522 | MS.gene69772:CDS |
| AACAGAACTTCTTCGCCATA+GGG | 0.534397 | 3.4:+77471086 | MS.gene69772:CDS |
| ACCAGCCCAGGTTGAGAGTG+AGG | 0.539324 | 3.4:+77470957 | MS.gene69772:CDS |
| ACTCCAGTAGGAATTGCAAT+TGG | 0.549229 | 3.4:+77472749 | MS.gene69772:CDS |
| TGGCGAAGAAGTTCTGTTGA+CGG | 0.549845 | 3.4:-77471081 | None:intergenic |
| ATAGCCACAAAACCAGTGAA+TGG | 0.552941 | 3.4:-77470859 | None:intergenic |
| CAAAATCACACCAGCAGCAA+AGG | 0.556559 | 3.4:-77470752 | None:intergenic |
| TAGGAATTGCAATTGGCATA+GGG | 0.557383 | 3.4:+77472756 | MS.gene69772:CDS |
| ATTCTGCGGCTATTAAAGTC+GGG | 0.557508 | 3.4:-77470558 | None:intergenic |
| CCCTCAACGATAAGGGCGGT+TGG | 0.560206 | 3.4:-77472806 | None:intergenic |
| GGTATCACTTTGCCTAGAAG+TGG | 0.576674 | 3.4:-77470688 | None:intergenic |
| TGGCTATGTGCACCGCTATG+GGG | 0.578981 | 3.4:+77470875 | MS.gene69772:CDS |
| TATTCAATGCAGCATCGTCT+GGG | 0.579696 | 3.4:+77472831 | MS.gene69772:CDS |
| TTCATCACATGTGCATTCTG+CGG | 0.582209 | 3.4:-77470572 | None:intergenic |
| CAAGGATGTTCGTTTAAACA+AGG | 0.587088 | 3.4:-77470826 | None:intergenic |
| TTTGCTTTGACTACTCCAGT+AGG | 0.595259 | 3.4:+77472737 | MS.gene69772:CDS |
| GTTATAATAGGAATTTCTCT+GGG | 0.595731 | 3.4:+77471494 | MS.gene69772:CDS |
| TCCAACCGCCCTTATCGTTG+AGG | 0.600044 | 3.4:+77472805 | MS.gene69772:CDS |
| TGCACATGTGATGAAGAAGA+TGG | 0.608430 | 3.4:+77470580 | MS.gene69772:CDS |
| TCAAAACCACTATTCTAACA+AGG | 0.614059 | 3.4:+77470933 | MS.gene69772:CDS |
| TGTTACCTCACTCTCAACCT+GGG | 0.615080 | 3.4:-77470962 | None:intergenic |
| AAAGTCAATGCAGCTACCAA+TGG | 0.625999 | 3.4:-77471545 | None:intergenic |
| GGTAACACCAGATGTGGAGA+AGG | 0.630798 | 3.4:+77470978 | MS.gene69772:CDS |
| TGTTTAAACGAACATCCTTG+GGG | 0.637545 | 3.4:+77470829 | MS.gene69772:CDS |
| GAGTGAGGTAACACCAGATG+TGG | 0.643136 | 3.4:+77470972 | MS.gene69772:CDS |
| TCGCCATAGGGTCATAACAC+AGG | 0.643471 | 3.4:+77471098 | MS.gene69772:CDS |
| ACTTGGAAGTTGTATAACAC+AGG | 0.657485 | 3.4:+77471592 | MS.gene69772:CDS |
| AATCCAAGGATGCAAAAGAG+TGG | 0.658857 | 3.4:+77472902 | MS.gene69772:CDS |
| GTTCATACTCATGCTTCACA+TGG | 0.660988 | 3.4:+77471021 | MS.gene69772:CDS |
| GTGAATGGAAAATCACCCCA+AGG | 0.670551 | 3.4:-77470844 | None:intergenic |
| GAAGGATCATGAAGGACACG+TGG | 0.676323 | 3.4:+77470996 | MS.gene69772:CDS |
| ATTGGCATAGGGATCAGTAG+TGG | 0.697771 | 3.4:+77472767 | MS.gene69772:CDS |
| TATTCCCTCAACGATAAGGG+CGG | 0.711008 | 3.4:-77472810 | None:intergenic |
| GATGTGGAGAAGGATCATGA+AGG | 0.713520 | 3.4:+77470988 | MS.gene69772:CDS |
| GAAGAAACAGAAGACATATG+GGG | 0.732324 | 3.4:-77471054 | None:intergenic |
| AACCATAAGAGTCCCCATAG+CGG | 0.744809 | 3.4:-77470887 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATTTATTCAAAAGAA+GGG | - | chr3.4:77471220-77471239 | None:intergenic | 10.0% |
| !! | TTATATATTTATTCAAAAGA+AGG | - | chr3.4:77471221-77471240 | None:intergenic | 10.0% |
| !!! | AATTATTTTGATTTCATAAT+AGG | + | chr3.4:77471442-77471461 | MS.gene69772:intron | 10.0% |
| !! | AAAACATATATCAACATAAA+TGG | - | chr3.4:77471153-77471172 | None:intergenic | 15.0% |
| !!! | AATTTTTCTAATTTCAATCA+TGG | + | chr3.4:77472307-77472326 | MS.gene69772:intron | 15.0% |
| !!! | ATGAAAAATATATCTTTTTC+GGG | - | chr3.4:77470724-77470743 | None:intergenic | 15.0% |
| !!! | CATATTTCTTAATTTGTATT+GGG | + | chr3.4:77472231-77472250 | MS.gene69772:intron | 15.0% |
| !!! | GATGAAAAATATATCTTTTT+CGG | - | chr3.4:77470725-77470744 | None:intergenic | 15.0% |
| !!! | TCATATTTCTTAATTTGTAT+TGG | + | chr3.4:77472230-77472249 | MS.gene69772:intron | 15.0% |
| !!! | TTCATATATTGATTGAAATA+CGG | + | chr3.4:77471398-77471417 | MS.gene69772:intron | 15.0% |
| !! | AAACTTCATTAAAAAAACCA+AGG | - | chr3.4:77471923-77471942 | None:intergenic | 20.0% |
| !! | AAATTCAAATTTCATGCAAA+AGG | - | chr3.4:77472292-77472311 | None:intergenic | 20.0% |
| !! | AAGAAAAACATATTAAAGAG+TGG | - | chr3.4:77472207-77472226 | None:intergenic | 20.0% |
| !! | AGTCTATCAATTACAATTAT+GGG | + | chr3.4:77472707-77472726 | MS.gene69772:CDS | 20.0% |
| !! | TAGAAAATAGTGATAGTAAA+TGG | - | chr3.4:77472451-77472470 | None:intergenic | 20.0% |
| !! | TATCTTTGAATAAACAATAG+TGG | - | chr3.4:77472132-77472151 | None:intergenic | 20.0% |
| !! | TATTTCCAATGCTATTAAAT+TGG | - | chr3.4:77472520-77472539 | None:intergenic | 20.0% |
| !! | TTTAATGAAGTTTCAAATGT+AGG | + | chr3.4:77471930-77471949 | MS.gene69772:intron | 20.0% |
| !!! | ATCTTTTGAACATATGATAT+AGG | - | chr3.4:77472101-77472120 | None:intergenic | 20.0% |
| !!! | TGAAAAATATATCTTTTTCG+GGG | - | chr3.4:77470723-77470742 | None:intergenic | 20.0% |
| ! | ACACAAACTATAGAAAAGAT+AGG | + | chr3.4:77471882-77471901 | MS.gene69772:intron | 25.0% |
| ! | CAGAGAAATTCCTATTATAA+CGG | - | chr3.4:77471495-77471514 | None:intergenic | 25.0% |
| ! | GAGTCTATCAATTACAATTA+TGG | + | chr3.4:77472706-77472725 | MS.gene69772:CDS | 25.0% |
| ! | GTTATAATAGGAATTTCTCT+GGG | + | chr3.4:77471494-77471513 | MS.gene69772:CDS | 25.0% |
| ! | GTTTACCAATTTAATAGCAT+TGG | + | chr3.4:77472512-77472531 | MS.gene69772:intron | 25.0% |
| ! | TAAGTCAGCAAACAATTATA+AGG | - | chr3.4:77472654-77472673 | None:intergenic | 25.0% |
| ! | TATGATATAGGAACAAACAA+TGG | - | chr3.4:77472089-77472108 | None:intergenic | 25.0% |
| ! | TCATAATAGGTATTAGAGTT+GGG | + | chr3.4:77471455-77471474 | MS.gene69772:intron | 25.0% |
| ! | TGCAATATATCTCTTCTATT+AGG | + | chr3.4:77472941-77472960 | MS.gene69772:CDS | 25.0% |
| ! | TTCATAATAGGTATTAGAGT+TGG | + | chr3.4:77471454-77471473 | MS.gene69772:intron | 25.0% |
| !! | ATATATTGATTGAAATACGG+TGG | + | chr3.4:77471401-77471420 | MS.gene69772:intron | 25.0% |
| !! | ATTTGATTTCTGATGAGATT+CGG | - | chr3.4:77472360-77472379 | None:intergenic | 25.0% |
| !! | GTGAACTTTTCAATAAACTT+GGG | + | chr3.4:77471957-77471976 | MS.gene69772:intron | 25.0% |
| !! | TGTGAACTTTTCAATAAACT+TGG | + | chr3.4:77471956-77471975 | MS.gene69772:intron | 25.0% |
| !!! | ATAATTGTTTGCTGACTTAT+TGG | + | chr3.4:77472655-77472674 | MS.gene69772:intron | 25.0% |
| AATTGGTAAACCTTTAGTTG+TGG | - | chr3.4:77472503-77472522 | None:intergenic | 30.0% | |
| ATATCTCTTCTATTAGGATC+TGG | + | chr3.4:77472947-77472966 | MS.gene69772:CDS | 30.0% | |
| ATTGTTCACTCCGTTATAAT+AGG | + | chr3.4:77471482-77471501 | MS.gene69772:CDS | 30.0% | |
| CATCCTTGGATTCATAAAAT+CGG | - | chr3.4:77472894-77472913 | None:intergenic | 30.0% | |
| CATTGGAAATACTTGCAAAA+AGG | + | chr3.4:77472529-77472548 | MS.gene69772:intron | 30.0% | |
| CGTTATAATAGGAATTTCTC+TGG | + | chr3.4:77471493-77471512 | MS.gene69772:CDS | 30.0% | |
| CTAGTGTGAGTAATATTCAA+AGG | - | chr3.4:77472480-77472499 | None:intergenic | 30.0% | |
| CTATTAAAGTCGGGATTATA+AGG | - | chr3.4:77470552-77470571 | None:intergenic | 30.0% | |
| TATGTCTCTTATAGCCAAAT+GGG | + | chr3.4:77472973-77472992 | MS.gene69772:CDS | 30.0% | |
| TCAAAACCACTATTCTAACA+AGG | + | chr3.4:77470933-77470952 | MS.gene69772:CDS | 30.0% | |
| TTATGTCTCTTATAGCCAAA+TGG | + | chr3.4:77472972-77472991 | MS.gene69772:CDS | 30.0% | |
| TTGTTTAAACGAACATCCTT+GGG | + | chr3.4:77470828-77470847 | MS.gene69772:CDS | 30.0% | |
| ! | ACTTTTCATCAGTTCTTTGA+AGG | + | chr3.4:77471563-77471582 | MS.gene69772:CDS | 30.0% |
| ! | GAATAAACAATAGTGGAGTT+TGG | - | chr3.4:77472125-77472144 | None:intergenic | 30.0% |
| !! | AAACTATTTCTGACTGTACA+TGG | + | chr3.4:77471742-77471761 | MS.gene69772:intron | 30.0% |
| !! | AACTATTTCTGACTGTACAT+GGG | + | chr3.4:77471743-77471762 | MS.gene69772:intron | 30.0% |
| !!! | GTTATGAGAACTCTTTTTTG+CGG | - | chr3.4:77472265-77472284 | None:intergenic | 30.0% |
| ACTTGGAAGTTGTATAACAC+AGG | + | chr3.4:77471592-77471611 | MS.gene69772:CDS | 35.0% | |
| CAAGGATGTTCGTTTAAACA+AGG | - | chr3.4:77470829-77470848 | None:intergenic | 35.0% | |
| CGAAGAAACAGAAGACATAT+GGG | - | chr3.4:77471058-77471077 | None:intergenic | 35.0% | |
| CTTGTTTAAACGAACATCCT+TGG | + | chr3.4:77470827-77470846 | MS.gene69772:CDS | 35.0% | |
| GAAGAAACAGAAGACATATG+GGG | - | chr3.4:77471057-77471076 | None:intergenic | 35.0% | |
| GAATATTCCCTCAACGATAA+GGG | - | chr3.4:77472816-77472835 | None:intergenic | 35.0% | |
| TAGGAATTGCAATTGGCATA+GGG | + | chr3.4:77472756-77472775 | MS.gene69772:CDS | 35.0% | |
| TATCTTATAGCGAAGAGCTT+TGG | - | chr3.4:77470620-77470639 | None:intergenic | 35.0% | |
| TGAATATTCCCTCAACGATA+AGG | - | chr3.4:77472817-77472836 | None:intergenic | 35.0% | |
| TGTTTAAACGAACATCCTTG+GGG | + | chr3.4:77470829-77470848 | MS.gene69772:CDS | 35.0% | |
| TTGAGTGATATGCAAACACA+TGG | - | chr3.4:77471770-77471789 | None:intergenic | 35.0% | |
| ! | AAAGAGTGGTGCTAGAAAAA+GGG | - | chr3.4:77472193-77472212 | None:intergenic | 35.0% |
| ! | ATTCTAGTTGCAAGTGCAAT+TGG | + | chr3.4:77470655-77470674 | MS.gene69772:CDS | 35.0% |
| ! | CATATGTCTTCTGTTTCTTC+GGG | + | chr3.4:77471057-77471076 | MS.gene69772:CDS | 35.0% |
| ! | CCATATGTCTTCTGTTTCTT+CGG | + | chr3.4:77471056-77471075 | MS.gene69772:CDS | 35.0% |
| ! | GGATAAGACTTTTCAAACCT+TGG | + | chr3.4:77471903-77471922 | MS.gene69772:intron | 35.0% |
| ! | GTCTGGGATCTTAATCTATA+TGG | + | chr3.4:77472847-77472866 | MS.gene69772:CDS | 35.0% |
| ! | TAAAGAGTGGTGCTAGAAAA+AGG | - | chr3.4:77472194-77472213 | None:intergenic | 35.0% |
| ! | TGTGACCAATGCATTTTGTT+GGG | + | chr3.4:77472060-77472079 | MS.gene69772:intron | 35.0% |
| !! | GTAAGATTCTCAAAAGCATC+AGG | - | chr3.4:77470802-77470821 | None:intergenic | 35.0% |
| !!! | GTGGTTTTGAAAATAAGCAG+TGG | - | chr3.4:77470923-77470942 | None:intergenic | 35.0% |
| !!! | TTTTCCATTCACTGGTTTTG+TGG | + | chr3.4:77470855-77470874 | MS.gene69772:CDS | 35.0% |
| AAAGTCAATGCAGCTACCAA+TGG | - | chr3.4:77471548-77471567 | None:intergenic | 40.0% | |
| AACAGAACTTCTTCGCCATA+GGG | + | chr3.4:77471086-77471105 | MS.gene69772:CDS | 40.0% | |
| AAGAGTGGTAGACTTCGATT+AGG | + | chr3.4:77472917-77472936 | MS.gene69772:CDS | 40.0% | |
| AATCCAAGGATGCAAAAGAG+TGG | + | chr3.4:77472902-77472921 | MS.gene69772:CDS | 40.0% | |
| ACTCCAGTAGGAATTGCAAT+TGG | + | chr3.4:77472749-77472768 | MS.gene69772:CDS | 40.0% | |
| ACTTCTAGGCAAAGTGATAC+CGG | + | chr3.4:77470690-77470709 | MS.gene69772:CDS | 40.0% | |
| ATACCTGTGTTATGACCCTA+TGG | - | chr3.4:77471104-77471123 | None:intergenic | 40.0% | |
| ATAGCCACAAAACCAGTGAA+TGG | - | chr3.4:77470862-77470881 | None:intergenic | 40.0% | |
| ATATTCAATGCAGCATCGTC+TGG | + | chr3.4:77472830-77472849 | MS.gene69772:CDS | 40.0% | |
| ATGCCAATTGCAATTCCTAC+TGG | - | chr3.4:77472755-77472774 | None:intergenic | 40.0% | |
| ATTCTGCGGCTATTAAAGTC+GGG | - | chr3.4:77470561-77470580 | None:intergenic | 40.0% | |
| ATTGGATGTGTGATCATTGC+AGG | + | chr3.4:77472673-77472692 | MS.gene69772:intron | 40.0% | |
| CAACAACCAAACCAAACACA+TGG | - | chr3.4:77471858-77471877 | None:intergenic | 40.0% | |
| CAGAGAGTCCTAAAACCATA+AGG | + | chr3.4:77471522-77471541 | MS.gene69772:CDS | 40.0% | |
| CATTCTGCGGCTATTAAAGT+CGG | - | chr3.4:77470562-77470581 | None:intergenic | 40.0% | |
| CCGAAGAAACAGAAGACATA+TGG | - | chr3.4:77471059-77471078 | None:intergenic | 40.0% | |
| GGAAACCCAACAAAATGCAT+TGG | - | chr3.4:77472068-77472087 | None:intergenic | 40.0% | |
| GGTGTTTGTATTCCACTTCT+AGG | + | chr3.4:77470676-77470695 | MS.gene69772:CDS | 40.0% | |
| GTAGGAATTGCAATTGGCAT+AGG | + | chr3.4:77472755-77472774 | MS.gene69772:CDS | 40.0% | |
| GTTCATACTCATGCTTCACA+TGG | + | chr3.4:77471021-77471040 | MS.gene69772:CDS | 40.0% | |
| TATTCAATGCAGCATCGTCT+GGG | + | chr3.4:77472831-77472850 | MS.gene69772:CDS | 40.0% | |
| TCCTAAAACCATAAGGCCAT+TGG | + | chr3.4:77471529-77471548 | MS.gene69772:CDS | 40.0% | |
| TGCACATGTGATGAAGAAGA+TGG | + | chr3.4:77470580-77470599 | MS.gene69772:CDS | 40.0% | |
| TTCATCACATGTGCATTCTG+CGG | - | chr3.4:77470575-77470594 | None:intergenic | 40.0% | |
| TTGGTCACACAAAGATTGAG+AGG | - | chr3.4:77472049-77472068 | None:intergenic | 40.0% | |
| TTTGCTTTGACTACTCCAGT+AGG | + | chr3.4:77472737-77472756 | MS.gene69772:CDS | 40.0% | |
| ! | AGGAAGCACATGAATGAAAC+CGG | - | chr3.4:77470782-77470801 | None:intergenic | 40.0% |
| ! | CATCAGTTCTTTGAAGGCAT+GGG | + | chr3.4:77471569-77471588 | MS.gene69772:CDS | 40.0% |
| ! | GTGTGACCAATGCATTTTGT+TGG | + | chr3.4:77472059-77472078 | MS.gene69772:intron | 40.0% |
| ! | TCATCAGTTCTTTGAAGGCA+TGG | + | chr3.4:77471568-77471587 | MS.gene69772:CDS | 40.0% |
| ! | TTCTGATGAGATTCGGTTGA+AGG | - | chr3.4:77472353-77472372 | None:intergenic | 40.0% |
| !!! | ACCAATGGCCTTATGGTTTT+AGG | - | chr3.4:77471533-77471552 | None:intergenic | 40.0% |
| !!! | CTGCCGATTTTATGAATCCA+AGG | + | chr3.4:77472888-77472907 | MS.gene69772:CDS | 40.0% |
| AACCATAAGAGTCCCCATAG+CGG | - | chr3.4:77470890-77470909 | None:intergenic | 45.0% | |
| ATCATCAAAGCCTTTGCTGC+TGG | + | chr3.4:77470742-77470761 | MS.gene69772:CDS | 45.0% | |
| ATTGGCATAGGGATCAGTAG+TGG | + | chr3.4:77472767-77472786 | MS.gene69772:CDS | 45.0% | |
| CAAAATCACACCAGCAGCAA+AGG | - | chr3.4:77470755-77470774 | None:intergenic | 45.0% | |
| CAACAGAACTTCTTCGCCAT+AGG | + | chr3.4:77471085-77471104 | MS.gene69772:CDS | 45.0% | |
| CTCACACTAGCCACAACTAA+AGG | + | chr3.4:77472490-77472509 | MS.gene69772:intron | 45.0% | |
| GATGTGGAGAAGGATCATGA+AGG | + | chr3.4:77470988-77471007 | MS.gene69772:CDS | 45.0% | |
| GGTATCACTTTGCCTAGAAG+TGG | - | chr3.4:77470691-77470710 | None:intergenic | 45.0% | |
| GTGAATGGAAAATCACCCCA+AGG | - | chr3.4:77470847-77470866 | None:intergenic | 45.0% | |
| TATTCCCTCAACGATAAGGG+CGG | - | chr3.4:77472813-77472832 | None:intergenic | 45.0% | |
| TCATGATCCTTCTCCACATC+TGG | - | chr3.4:77470988-77471007 | None:intergenic | 45.0% | |
| TGGCGAAGAAGTTCTGTTGA+CGG | - | chr3.4:77471084-77471103 | None:intergenic | 45.0% | |
| TGTTACCTCACTCTCAACCT+GGG | - | chr3.4:77470965-77470984 | None:intergenic | 45.0% | |
| TTGGGACCATGTGTTTGGTT+TGG | + | chr3.4:77471849-77471868 | MS.gene69772:intron | 45.0% | |
| ! | CTACCACTCTTTTGCATCCT+TGG | - | chr3.4:77472908-77472927 | None:intergenic | 45.0% |
| ! | CTGGTGCCTTGTTAGAATAG+TGG | - | chr3.4:77470942-77470961 | None:intergenic | 45.0% |
| ! | CTTTGCTGCTGGTGTGATTT+TGG | + | chr3.4:77470753-77470772 | MS.gene69772:CDS | 45.0% |
| ! | TGGGGTGATTTTCCATTCAC+TGG | + | chr3.4:77470847-77470866 | MS.gene69772:CDS | 45.0% |
| ! | TTCTTTGAAGGCATGGGACT+TGG | + | chr3.4:77471575-77471594 | MS.gene69772:CDS | 45.0% |
| AACACATGGTCCCAAGCACA+TGG | - | chr3.4:77471844-77471863 | None:intergenic | 50.0% | |
| ACACATGGTCCCAAGCACAT+GGG | - | chr3.4:77471843-77471862 | None:intergenic | 50.0% | |
| GAAGGATCATGAAGGACACG+TGG | + | chr3.4:77470996-77471015 | MS.gene69772:CDS | 50.0% | |
| GAGTGAGGTAACACCAGATG+TGG | + | chr3.4:77470972-77470991 | MS.gene69772:CDS | 50.0% | |
| GGTAACACCAGATGTGGAGA+AGG | + | chr3.4:77470978-77470997 | MS.gene69772:CDS | 50.0% | |
| GTGTTACCTCACTCTCAACC+TGG | - | chr3.4:77470966-77470985 | None:intergenic | 50.0% | |
| GTTCATGAGCCCATGTGCTT+GGG | + | chr3.4:77471831-77471850 | MS.gene69772:intron | 50.0% | |
| TCGCCATAGGGTCATAACAC+AGG | + | chr3.4:77471098-77471117 | MS.gene69772:CDS | 50.0% | |
| TGTGCTTGGGACCATGTGTT+TGG | + | chr3.4:77471844-77471863 | MS.gene69772:intron | 50.0% | |
| TGTTCATGAGCCCATGTGCT+TGG | + | chr3.4:77471830-77471849 | MS.gene69772:intron | 50.0% | |
| ! | TGCAGCTACCAATGGCCTTA+TGG | - | chr3.4:77471540-77471559 | None:intergenic | 50.0% |
| !! | GCTGGTGTGATTTTGGCAAC+CGG | + | chr3.4:77470760-77470779 | MS.gene69772:CDS | 50.0% |
| !!! | TCTTTTTCGGGGCTTAACGC+CGG | - | chr3.4:77470712-77470731 | None:intergenic | 50.0% |
| CACCGCTATGGGGACTCTTA+TGG | + | chr3.4:77470885-77470904 | MS.gene69772:CDS | 55.0% | |
| CCAACCGCCCTTATCGTTGA+GGG | + | chr3.4:77472806-77472825 | MS.gene69772:CDS | 55.0% | |
| GTGGCTATGTGCACCGCTAT+GGG | + | chr3.4:77470874-77470893 | MS.gene69772:CDS | 55.0% | |
| TCCAACCGCCCTTATCGTTG+AGG | + | chr3.4:77472805-77472824 | MS.gene69772:CDS | 55.0% | |
| TGGCTATGTGCACCGCTATG+GGG | + | chr3.4:77470875-77470894 | MS.gene69772:CDS | 55.0% | |
| TGTGGCTATGTGCACCGCTA+TGG | + | chr3.4:77470873-77470892 | MS.gene69772:CDS | 55.0% | |
| ! | TTCTAACAAGGCACCAGCCC+AGG | + | chr3.4:77470945-77470964 | MS.gene69772:CDS | 55.0% |
| ACCTCACTCTCAACCTGGGC+TGG | - | chr3.4:77470961-77470980 | None:intergenic | 60.0% | |
| CCCTCAACGATAAGGGCGGT+TGG | - | chr3.4:77472809-77472828 | None:intergenic | 60.0% | |
| ! | ACCAGCCCAGGTTGAGAGTG+AGG | + | chr3.4:77470957-77470976 | MS.gene69772:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 77470499 | 77473000 | 77470499 | ID=MS.gene69772 |
| chr3.4 | mRNA | 77470499 | 77473000 | 77470499 | ID=MS.gene69772.t1;Parent=MS.gene69772 |
| chr3.4 | exon | 77470499 | 77471119 | 77470499 | ID=MS.gene69772.t1.exon1;Parent=MS.gene69772.t1 |
| chr3.4 | CDS | 77470499 | 77471119 | 77470499 | ID=cds.MS.gene69772.t1;Parent=MS.gene69772.t1 |
| chr3.4 | exon | 77471464 | 77471613 | 77471464 | ID=MS.gene69772.t1.exon2;Parent=MS.gene69772.t1 |
| chr3.4 | CDS | 77471464 | 77471613 | 77471464 | ID=cds.MS.gene69772.t1;Parent=MS.gene69772.t1 |
| chr3.4 | exon | 77472695 | 77473000 | 77472695 | ID=MS.gene69772.t1.exon3;Parent=MS.gene69772.t1 |
| chr3.4 | CDS | 77472695 | 77473000 | 77472695 | ID=cds.MS.gene69772.t1;Parent=MS.gene69772.t1 |
| Gene Sequence |
| Protein sequence |
