Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69773.t1 | XP_013461171.1 | 90.3 | 361 | 30 | 1 | 1 | 356 | 1 | 361 | 1.70E-160 | 575.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69773.t1 | Q6L8G0 | 53.2 | 348 | 158 | 2 | 9 | 356 | 11 | 353 | 1.6e-93 | 344.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69773.t1 | A0A072VAI3 | 90.3 | 361 | 30 | 1 | 1 | 356 | 1 | 361 | 1.3e-160 | 575.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009810 | MS.gene69773 | PPI |
| MS.gene50197 | MS.gene69773 | PPI |
| MS.gene62494 | MS.gene69773 | PPI |
| MS.gene038972 | MS.gene69773 | PPI |
| MS.gene045723 | MS.gene69773 | PPI |
| MS.gene066193 | MS.gene69773 | PPI |
| MS.gene56999 | MS.gene69773 | PPI |
| MS.gene54167 | MS.gene69773 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69773.t1 | MTR_3g081640 | 94.737 | 361 | 14 | 1 | 1 | 356 | 1 | 361 | 0.0 | 665 |
| MS.gene69773.t1 | MTR_3g081580 | 85.596 | 361 | 44 | 4 | 1 | 356 | 1 | 358 | 0.0 | 591 |
| MS.gene69773.t1 | MTR_3g082050 | 87.079 | 356 | 39 | 3 | 1 | 356 | 1 | 349 | 0.0 | 568 |
| MS.gene69773.t1 | MTR_3g082050 | 87.644 | 348 | 39 | 3 | 9 | 356 | 34 | 377 | 0.0 | 561 |
| MS.gene69773.t1 | MTR_3g082050 | 90.000 | 320 | 29 | 2 | 37 | 356 | 56 | 372 | 0.0 | 552 |
| MS.gene69773.t1 | MTR_3g081690 | 86.647 | 337 | 38 | 3 | 1 | 337 | 1 | 330 | 0.0 | 528 |
| MS.gene69773.t1 | MTR_3g081690 | 89.701 | 301 | 28 | 2 | 37 | 337 | 56 | 353 | 0.0 | 513 |
| MS.gene69773.t1 | MTR_2g064310 | 56.901 | 355 | 143 | 5 | 7 | 356 | 9 | 358 | 1.77e-141 | 405 |
| MS.gene69773.t1 | MTR_3g081690 | 84.862 | 218 | 30 | 2 | 120 | 337 | 25 | 239 | 7.83e-115 | 333 |
| MS.gene69773.t1 | MTR_6g007687 | 50.867 | 346 | 148 | 5 | 15 | 353 | 14 | 344 | 1.37e-112 | 332 |
| MS.gene69773.t1 | MTR_8g105030 | 49.570 | 349 | 162 | 4 | 6 | 350 | 9 | 347 | 2.51e-111 | 330 |
| MS.gene69773.t1 | MTR_4g083570 | 52.011 | 348 | 157 | 5 | 11 | 356 | 11 | 350 | 4.09e-111 | 328 |
| MS.gene69773.t1 | MTR_3g104400 | 48.056 | 360 | 156 | 4 | 28 | 356 | 6 | 365 | 9.24e-104 | 310 |
| MS.gene69773.t1 | MTR_3g081690 | 81.340 | 209 | 29 | 3 | 146 | 354 | 7 | 205 | 8.00e-99 | 291 |
| MS.gene69773.t1 | MTR_3g081690 | 86.458 | 192 | 23 | 2 | 146 | 337 | 29 | 217 | 1.52e-98 | 291 |
| MS.gene69773.t1 | MTR_1g016120 | 46.281 | 363 | 163 | 5 | 26 | 356 | 12 | 374 | 1.18e-96 | 292 |
| MS.gene69773.t1 | MTR_5g071990 | 41.399 | 343 | 166 | 9 | 24 | 356 | 1 | 318 | 4.56e-75 | 234 |
| MS.gene69773.t1 | MTR_3g081630 | 69.231 | 65 | 9 | 2 | 77 | 132 | 20 | 82 | 1.06e-21 | 89.7 |
| MS.gene69773.t1 | MTR_4g006710 | 43.182 | 88 | 49 | 1 | 37 | 124 | 26 | 112 | 4.83e-15 | 71.2 |
| MS.gene69773.t1 | MTR_3g073950 | 30.000 | 160 | 51 | 5 | 1 | 160 | 1 | 99 | 2.16e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69773.t1 | AT3G12750 | 56.772 | 347 | 137 | 5 | 14 | 356 | 18 | 355 | 3.65e-134 | 387 |
| MS.gene69773.t1 | AT1G05300 | 55.988 | 334 | 142 | 3 | 26 | 356 | 29 | 360 | 1.50e-131 | 380 |
| MS.gene69773.t1 | AT2G32270 | 54.848 | 330 | 124 | 2 | 27 | 356 | 35 | 339 | 8.72e-124 | 360 |
| MS.gene69773.t1 | AT1G31260 | 50.898 | 334 | 158 | 3 | 27 | 356 | 33 | 364 | 4.79e-113 | 333 |
| MS.gene69773.t1 | AT5G62160 | 49.862 | 363 | 161 | 8 | 5 | 356 | 3 | 355 | 1.61e-111 | 329 |
| MS.gene69773.t1 | AT2G04032 | 47.879 | 330 | 168 | 2 | 30 | 356 | 37 | 365 | 1.10e-106 | 317 |
| MS.gene69773.t1 | AT4G19690 | 46.479 | 355 | 162 | 4 | 11 | 356 | 12 | 347 | 3.58e-104 | 310 |
| MS.gene69773.t1 | AT4G19680 | 45.070 | 355 | 177 | 5 | 10 | 356 | 6 | 350 | 5.27e-98 | 295 |
| MS.gene69773.t1 | AT1G10970 | 45.355 | 366 | 162 | 5 | 28 | 356 | 10 | 374 | 3.53e-95 | 288 |
| MS.gene69773.t1 | AT1G10970 | 45.355 | 366 | 162 | 5 | 28 | 356 | 10 | 374 | 3.53e-95 | 288 |
| MS.gene69773.t1 | AT1G60960 | 41.310 | 397 | 177 | 4 | 16 | 356 | 19 | 415 | 8.60e-93 | 283 |
| MS.gene69773.t1 | AT1G60960 | 41.310 | 397 | 177 | 4 | 16 | 356 | 29 | 425 | 1.03e-92 | 283 |
| MS.gene69773.t1 | AT4G33020 | 39.459 | 370 | 179 | 4 | 29 | 356 | 25 | 391 | 2.94e-83 | 258 |
| MS.gene69773.t1 | AT1G05300 | 51.883 | 239 | 110 | 3 | 26 | 261 | 29 | 265 | 7.14e-79 | 243 |
| MS.gene69773.t1 | AT4G33020 | 38.617 | 347 | 170 | 3 | 50 | 356 | 1 | 344 | 3.87e-76 | 238 |
| MS.gene69773.t1 | AT2G30080 | 41.642 | 341 | 161 | 6 | 37 | 356 | 18 | 341 | 4.58e-76 | 238 |
| MS.gene69773.t1 | AT4G19680 | 42.578 | 256 | 129 | 5 | 10 | 257 | 6 | 251 | 1.06e-60 | 196 |
| MS.gene69773.t1 | AT4G19690 | 36.585 | 205 | 102 | 4 | 11 | 206 | 12 | 197 | 7.77e-35 | 127 |
| MS.gene69773.t1 | AT1G60960 | 38.690 | 168 | 98 | 1 | 3 | 165 | 16 | 183 | 8.67e-29 | 113 |
Find 73 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGAATCGTTATTCTAAA+AGG | 0.149094 | 3.4:+77477437 | MS.gene69773:CDS |
| TACAACCAGCTCCTAATAAA+AGG | 0.216157 | 3.4:-77478747 | None:intergenic |
| GTAGGAATTGGAATTGGTTT+AGG | 0.227156 | 3.4:+77478550 | MS.gene69773:CDS |
| TCATTATAGGTGTTGGAGTT+AGG | 0.272478 | 3.4:+77477770 | MS.gene69773:intron |
| AGCTGGTATCTTAATCTATA+TGG | 0.297254 | 3.4:+77478642 | MS.gene69773:CDS |
| TCCTTGTTGCTCCACATCTA+AGG | 0.303766 | 3.4:-77477497 | None:intergenic |
| CATCAGAACTTCTTCGTCAT+AGG | 0.305262 | 3.4:+77477584 | MS.gene69773:CDS |
| GGTGTTTGTATCCCACTTCT+TGG | 0.306746 | 3.4:+77477181 | MS.gene69773:CDS |
| TAGGAATTGGAATTGGTTTA+GGG | 0.309747 | 3.4:+77478551 | MS.gene69773:CDS |
| ATTGTCCACTCTGTTATAAT+AGG | 0.310250 | 3.4:+77477797 | MS.gene69773:CDS |
| TGCAGCTACAAGCGGCCTTA+TGG | 0.335829 | 3.4:-77477852 | None:intergenic |
| TTGACTACTCCAGTAGGAAT+TGG | 0.341385 | 3.4:+77478538 | MS.gene69773:CDS |
| TTGTTTAAACGAACATCCTT+GGG | 0.345556 | 3.4:+77477333 | MS.gene69773:CDS |
| TACAAACTCTTAAGCCCATT+TGG | 0.351668 | 3.4:-77478782 | None:intergenic |
| CATTATAGGTGTTGGAGTTA+GGG | 0.366275 | 3.4:+77477771 | MS.gene69773:intron |
| GTATGTCTCTTCTAGCCAAA+TGG | 0.386544 | 3.4:+77478767 | MS.gene69773:CDS |
| CCTTCAACAATAAGTGCGTT+TGG | 0.386749 | 3.4:-77478601 | None:intergenic |
| GTGGCTATGTGCACTGCTAT+GGG | 0.406127 | 3.4:+77477379 | MS.gene69773:CDS |
| CTTGTTTAAACGAACATCCT+TGG | 0.415244 | 3.4:+77477332 | MS.gene69773:CDS |
| TGTGGCTATGTGCACTGCTA+TGG | 0.422472 | 3.4:+77477378 | MS.gene69773:CDS |
| TCAGAATCGTTATTCTAAAA+GGG | 0.425996 | 3.4:+77477438 | MS.gene69773:CDS |
| CCAAACGCACTTATTGTTGA+AGG | 0.427454 | 3.4:+77478601 | MS.gene69773:CDS |
| TATGTCTCTTCTAGCCAAAT+GGG | 0.432359 | 3.4:+77478768 | MS.gene69773:CDS |
| ATCTTTAATGCAGCTTCAGC+TGG | 0.437614 | 3.4:+77478625 | MS.gene69773:CDS |
| AAGAGTGGTAAACTTCGATT+AGG | 0.445141 | 3.4:+77478712 | MS.gene69773:CDS |
| CACTGCTATGGGGTCTCTCA+TGG | 0.447113 | 3.4:+77477390 | MS.gene69773:CDS |
| ACTCCAGTAGGAATTGGAAT+TGG | 0.447205 | 3.4:+77478544 | MS.gene69773:CDS |
| AAACCAATTCCAATTCCTAC+TGG | 0.448336 | 3.4:-77478547 | None:intergenic |
| GAGTCTATCAATTACAATCA+TGG | 0.449026 | 3.4:+77478501 | MS.gene69773:CDS |
| GTAAGATTCTCAAAAGCATC+AGG | 0.471092 | 3.4:-77477304 | None:intergenic |
| ATCAGAACTTCTTCGTCATA+GGG | 0.471833 | 3.4:+77477585 | MS.gene69773:CDS |
| ACAACCAGCTCCTAATAAAA+GGG | 0.495697 | 3.4:-77478746 | None:intergenic |
| ATCATTAAAACCTTTGCTGC+CGG | 0.497500 | 3.4:+77477247 | MS.gene69773:CDS |
| CTATTAGAGTCGGGAATATG+AGG | 0.501530 | 3.4:-77477054 | None:intergenic |
| AGGAAGCACATGAATGAAAC+CGG | 0.505115 | 3.4:-77477284 | None:intergenic |
| AGTCTATCAATTACAATCAT+GGG | 0.517712 | 3.4:+77478502 | MS.gene69773:CDS |
| CAGAGAGTCCTAAAACCATA+AGG | 0.533501 | 3.4:+77477837 | MS.gene69773:CDS |
| TCGTCATAGGGTCATATCAC+AGG | 0.536885 | 3.4:+77477597 | MS.gene69773:CDS |
| TGACGAAGAAGTTCTGATGA+AGG | 0.540078 | 3.4:-77477580 | None:intergenic |
| ATAGCCACAAAACCTGTGAA+TGG | 0.549290 | 3.4:-77477364 | None:intergenic |
| CGCAGAATGCACGTGTGATG+AGG | 0.554438 | 3.4:+77477078 | MS.gene69773:CDS |
| GGTATGACTTTGCCAAGAAG+TGG | 0.555532 | 3.4:-77477193 | None:intergenic |
| TAATATCACACCGGCAGCAA+AGG | 0.560290 | 3.4:-77477257 | None:intergenic |
| GCCGGTGTGATATTATCCAC+CGG | 0.561788 | 3.4:+77477265 | MS.gene69773:CDS |
| CATTCTGCGGCTATTAGAGT+CGG | 0.562897 | 3.4:-77477064 | None:intergenic |
| AAGAAGTTCTGATGAAGGAT+CGG | 0.581698 | 3.4:-77477575 | None:intergenic |
| ACTTGGAAGTTGTATAACTC+AGG | 0.582307 | 3.4:+77477907 | MS.gene69773:CDS |
| ATGAAGGATCGGAAGAAACA+TGG | 0.586911 | 3.4:-77477564 | None:intergenic |
| ATTCTGCGGCTATTAGAGTC+GGG | 0.588616 | 3.4:-77477063 | None:intergenic |
| GCATCCCATGGTCATGCACA+TGG | 0.588921 | 3.4:+77477541 | MS.gene69773:CDS |
| CAAGGATGTTCGTTTAAACA+AGG | 0.589706 | 3.4:-77477331 | None:intergenic |
| CTCATCACACGTGCATTCTG+CGG | 0.595994 | 3.4:-77477077 | None:intergenic |
| TTTGCTTTGACTACTCCAGT+AGG | 0.602695 | 3.4:+77478532 | MS.gene69773:CDS |
| TGGCTATGTGCACTGCTATG+GGG | 0.605907 | 3.4:+77477380 | MS.gene69773:CDS |
| TGCACGTGTGATGAGGAAGA+TGG | 0.605995 | 3.4:+77477085 | MS.gene69773:CDS |
| GTTATAATAGGAATCTCTCT+CGG | 0.610596 | 3.4:+77477809 | MS.gene69773:CDS |
| TCATGAGGCAACCTTAGATG+TGG | 0.613366 | 3.4:+77477486 | MS.gene69773:CDS |
| AAGGGCATCAACGCTGACAC+AGG | 0.617183 | 3.4:+77477456 | MS.gene69773:CDS |
| GTTCATACTCATGCATCCCA+TGG | 0.618746 | 3.4:+77477529 | MS.gene69773:CDS |
| CATGGCCATGTGCATGACCA+TGG | 0.622464 | 3.4:-77477546 | None:intergenic |
| TGTTTAAACGAACATCCTTG+GGG | 0.632590 | 3.4:+77477334 | MS.gene69773:CDS |
| GTATGACTTTGCCAAGAAGT+GGG | 0.636419 | 3.4:-77477192 | None:intergenic |
| ATGGCCATGTGCATGACCAT+GGG | 0.642171 | 3.4:-77477545 | None:intergenic |
| ACCTTAGATGTGGAGCAACA+AGG | 0.643114 | 3.4:+77477496 | MS.gene69773:CDS |
| ATAACGATTCTGAAAATAAG+CGG | 0.644739 | 3.4:-77477428 | None:intergenic |
| AATCCAAGGATGCAAAAGAG+TGG | 0.658857 | 3.4:+77478697 | MS.gene69773:CDS |
| ACGATTCTGAAAATAAGCGG+TGG | 0.666807 | 3.4:-77477425 | None:intergenic |
| GTGAATGGAAAATCACCCCA+AGG | 0.672947 | 3.4:-77477349 | None:intergenic |
| AAGGTCAATGCAGCTACAAG+CGG | 0.676887 | 3.4:-77477860 | None:intergenic |
| ACCGGTGGATAATATCACAC+CGG | 0.694959 | 3.4:-77477266 | None:intergenic |
| AAGCACATGAATGAAACCGG+TGG | 0.696675 | 3.4:-77477281 | None:intergenic |
| GACACAGGTTAAGAGTCATG+AGG | 0.716963 | 3.4:+77477471 | MS.gene69773:CDS |
| AGATTCCTATTATAACAGAG+TGG | 0.719648 | 3.4:-77477802 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATTTATGAGTGTAAAT+GGG | + | chr3.4:77477984-77478003 | MS.gene69773:intron | 15.0% |
| !!! | ATGAAAAATATATCTTTTTC+AGG | - | chr3.4:77477229-77477248 | None:intergenic | 15.0% |
| !!! | TATTGTTTTGATTTCATTAT+AGG | + | chr3.4:77477757-77477776 | MS.gene69773:intron | 15.0% |
| !!! | TGAAAAATATATCTTTTTCA+GGG | - | chr3.4:77477228-77477247 | None:intergenic | 15.0% |
| !!! | TGAACTTTTTTATTTATGTA+TGG | + | chr3.4:77478386-77478405 | MS.gene69773:intron | 15.0% |
| !!! | TTCTTGTTTAAATTCAATTA+AGG | - | chr3.4:77478425-77478444 | None:intergenic | 15.0% |
| !! | AAATCATATTCCATAATTCA+TGG | - | chr3.4:77477950-77477969 | None:intergenic | 20.0% |
| !! | CTAATATTTATGAGTGTAAA+TGG | + | chr3.4:77477983-77478002 | MS.gene69773:intron | 20.0% |
| !! | TATTTCAGTTTATATGACTT+TGG | - | chr3.4:77478332-77478351 | None:intergenic | 20.0% |
| !! | TTAAACAAGAAAACAATCAT+GGG | + | chr3.4:77478434-77478453 | MS.gene69773:intron | 20.0% |
| !! | TTTAAACAAGAAAACAATCA+TGG | + | chr3.4:77478433-77478452 | MS.gene69773:intron | 20.0% |
| ! | AGTCTATCAATTACAATCAT+GGG | + | chr3.4:77478502-77478521 | MS.gene69773:CDS | 25.0% |
| ! | ATATTCCATAATTCATGGAT+AGG | - | chr3.4:77477945-77477964 | None:intergenic | 25.0% |
| ! | CATAGCTATAGAAACTATAA+GGG | - | chr3.4:77478261-77478280 | None:intergenic | 25.0% |
| ! | GAAACTTCATAATGAAATCA+AGG | - | chr3.4:77478075-77478094 | None:intergenic | 25.0% |
| ! | TAATACCTATCCATGAATTA+TGG | + | chr3.4:77477937-77477956 | MS.gene69773:intron | 25.0% |
| ! | TGAAGTTTCAAATACATGTA+CGG | + | chr3.4:77478086-77478105 | MS.gene69773:intron | 25.0% |
| ! | TTCAGAATCGTTATTCTAAA+AGG | + | chr3.4:77477437-77477456 | MS.gene69773:CDS | 25.0% |
| ! | TTTGTAACCAATGTATTTGT+TGG | + | chr3.4:77478194-77478213 | MS.gene69773:intron | 25.0% |
| !! | ATAACGATTCTGAAAATAAG+CGG | - | chr3.4:77477431-77477450 | None:intergenic | 25.0% |
| !! | TCAGAATCGTTATTCTAAAA+GGG | + | chr3.4:77477438-77477457 | MS.gene69773:CDS | 25.0% |
| !! | TTGGCTAATTTTGAACATTT+AGG | - | chr3.4:77478235-77478254 | None:intergenic | 25.0% |
| !! | TTTGATTTCATTATAGGTGT+TGG | + | chr3.4:77477763-77477782 | MS.gene69773:intron | 25.0% |
| !!! | ACCTTTCATCAATTTTTTGA+GGG | + | chr3.4:77477878-77477897 | MS.gene69773:CDS | 25.0% |
| AGATTCCTATTATAACAGAG+TGG | - | chr3.4:77477805-77477824 | None:intergenic | 30.0% | |
| AGCTGGTATCTTAATCTATA+TGG | + | chr3.4:77478642-77478661 | MS.gene69773:CDS | 30.0% | |
| ATAGAAACTATAAGGGAGTT+TGG | - | chr3.4:77478254-77478273 | None:intergenic | 30.0% | |
| ATGAAATGATACTATGAGTC+AGG | + | chr3.4:77478036-77478055 | MS.gene69773:intron | 30.0% | |
| ATTGTCCACTCTGTTATAAT+AGG | + | chr3.4:77477797-77477816 | MS.gene69773:CDS | 30.0% | |
| GAACATTTAGGAACAAACAA+GGG | - | chr3.4:77478223-77478242 | None:intergenic | 30.0% | |
| GAGTCTATCAATTACAATCA+TGG | + | chr3.4:77478501-77478520 | MS.gene69773:CDS | 30.0% | |
| GCATAGCTATAGAAACTATA+AGG | - | chr3.4:77478262-77478281 | None:intergenic | 30.0% | |
| GTTATAATAGGAATCTCTCT+CGG | + | chr3.4:77477809-77477828 | MS.gene69773:CDS | 30.0% | |
| GTTCAACTAACATAACTTCT+AGG | - | chr3.4:77478371-77478390 | None:intergenic | 30.0% | |
| TGAACATTTAGGAACAAACA+AGG | - | chr3.4:77478224-77478243 | None:intergenic | 30.0% | |
| TTGTTTAAACGAACATCCTT+GGG | + | chr3.4:77477333-77477352 | MS.gene69773:CDS | 30.0% | |
| ! | TAGGAATTGGAATTGGTTTA+GGG | + | chr3.4:77478551-77478570 | MS.gene69773:CDS | 30.0% |
| ! | TGCAATCTATCCCTTTTATT+AGG | + | chr3.4:77478736-77478755 | MS.gene69773:CDS | 30.0% |
| !!! | ATTTTAGTTGCAAGTGCAAT+TGG | + | chr3.4:77477160-77477179 | MS.gene69773:CDS | 30.0% |
| !!! | GACCTTTCATCAATTTTTTG+AGG | + | chr3.4:77477877-77477896 | MS.gene69773:CDS | 30.0% |
| AAACCAATTCCAATTCCTAC+TGG | - | chr3.4:77478550-77478569 | None:intergenic | 35.0% | |
| AAGAGTGGTAAACTTCGATT+AGG | + | chr3.4:77478712-77478731 | MS.gene69773:CDS | 35.0% | |
| AATGGGACCATATGTTTGTT+TGG | + | chr3.4:77478001-77478020 | MS.gene69773:intron | 35.0% | |
| ACAACCAGCTCCTAATAAAA+GGG | - | chr3.4:77478749-77478768 | None:intergenic | 35.0% | |
| ACACCAACCAAACAAACATA+TGG | - | chr3.4:77478011-77478030 | None:intergenic | 35.0% | |
| ACTTGGAAGTTGTATAACTC+AGG | + | chr3.4:77477907-77477926 | MS.gene69773:CDS | 35.0% | |
| ATCAGAACTTCTTCGTCATA+GGG | + | chr3.4:77477585-77477604 | MS.gene69773:CDS | 35.0% | |
| ATCATTAAAACCTTTGCTGC+CGG | + | chr3.4:77477247-77477266 | MS.gene69773:CDS | 35.0% | |
| CAAGGATGTTCGTTTAAACA+AGG | - | chr3.4:77477334-77477353 | None:intergenic | 35.0% | |
| CTTGTTTAAACGAACATCCT+TGG | + | chr3.4:77477332-77477351 | MS.gene69773:CDS | 35.0% | |
| GCCCTCAAAAAATTGATGAA+AGG | - | chr3.4:77477882-77477901 | None:intergenic | 35.0% | |
| GTTTCAAATACATGTACGGT+TGG | + | chr3.4:77478090-77478109 | MS.gene69773:intron | 35.0% | |
| TACAACCAGCTCCTAATAAA+AGG | - | chr3.4:77478750-77478769 | None:intergenic | 35.0% | |
| TAGCTATGCTAATACTCAAG+AGG | + | chr3.4:77478273-77478292 | MS.gene69773:intron | 35.0% | |
| TATGTCTCTTCTAGCCAAAT+GGG | + | chr3.4:77478768-77478787 | MS.gene69773:CDS | 35.0% | |
| TGTTTAAACGAACATCCTTG+GGG | + | chr3.4:77477334-77477353 | MS.gene69773:CDS | 35.0% | |
| ! | AAGAAGTTCTGATGAAGGAT+CGG | - | chr3.4:77477578-77477597 | None:intergenic | 35.0% |
| ! | GTAGGAATTGGAATTGGTTT+AGG | + | chr3.4:77478550-77478569 | MS.gene69773:CDS | 35.0% |
| ! | TATTTTGTAACGTAGGGCTT+TGG | - | chr3.4:77477125-77477144 | None:intergenic | 35.0% |
| ! | TTTTCCATTCACAGGTTTTG+TGG | + | chr3.4:77477360-77477379 | MS.gene69773:CDS | 35.0% |
| !! | CAGCTGATTTTATGAATCCA+AGG | + | chr3.4:77478683-77478702 | MS.gene69773:CDS | 35.0% |
| !! | CATTATAGGTGTTGGAGTTA+GGG | + | chr3.4:77477771-77477790 | MS.gene69773:intron | 35.0% |
| !! | GTAAGATTCTCAAAAGCATC+AGG | - | chr3.4:77477307-77477326 | None:intergenic | 35.0% |
| !! | TCATTATAGGTGTTGGAGTT+AGG | + | chr3.4:77477770-77477789 | MS.gene69773:intron | 35.0% |
| !!! | AAGCTGCTATTTTGTAACGT+AGG | - | chr3.4:77477132-77477151 | None:intergenic | 35.0% |
| !!! | AGCTGCTATTTTGTAACGTA+GGG | - | chr3.4:77477131-77477150 | None:intergenic | 35.0% |
| !!! | CATCAATTTTTTGAGGGCAT+GGG | + | chr3.4:77477884-77477903 | MS.gene69773:CDS | 35.0% |
| !!! | TCATCAATTTTTTGAGGGCA+TGG | + | chr3.4:77477883-77477902 | MS.gene69773:CDS | 35.0% |
| AATCCAAGGATGCAAAAGAG+TGG | + | chr3.4:77478697-77478716 | MS.gene69773:CDS | 40.0% | |
| ACTCCAGTAGGAATTGGAAT+TGG | + | chr3.4:77478544-77478563 | MS.gene69773:CDS | 40.0% | |
| ATAGCCACAAAACCTGTGAA+TGG | - | chr3.4:77477367-77477386 | None:intergenic | 40.0% | |
| ATCTTTAATGCAGCTTCAGC+TGG | + | chr3.4:77478625-77478644 | MS.gene69773:CDS | 40.0% | |
| ATGAAGGATCGGAAGAAACA+TGG | - | chr3.4:77477567-77477586 | None:intergenic | 40.0% | |
| CAGAGAGTCCTAAAACCATA+AGG | + | chr3.4:77477837-77477856 | MS.gene69773:CDS | 40.0% | |
| CATCAGAACTTCTTCGTCAT+AGG | + | chr3.4:77477584-77477603 | MS.gene69773:CDS | 40.0% | |
| CCAAACGCACTTATTGTTGA+AGG | + | chr3.4:77478601-77478620 | MS.gene69773:CDS | 40.0% | |
| CCTTCAACAATAAGTGCGTT+TGG | - | chr3.4:77478604-77478623 | None:intergenic | 40.0% | |
| CTATTAGAGTCGGGAATATG+AGG | - | chr3.4:77477057-77477076 | None:intergenic | 40.0% | |
| CTCTTGAAATTTGCCTGCAA+TGG | - | chr3.4:77478484-77478503 | None:intergenic | 40.0% | |
| GGACCATATGTTTGTTTGGT+TGG | + | chr3.4:77478005-77478024 | MS.gene69773:intron | 40.0% | |
| GTATGACTTTGCCAAGAAGT+GGG | - | chr3.4:77477195-77477214 | None:intergenic | 40.0% | |
| GTATGTCTCTTCTAGCCAAA+TGG | + | chr3.4:77478767-77478786 | MS.gene69773:CDS | 40.0% | |
| TTGACTACTCCAGTAGGAAT+TGG | + | chr3.4:77478538-77478557 | MS.gene69773:CDS | 40.0% | |
| TTTGCTTTGACTACTCCAGT+AGG | + | chr3.4:77478532-77478551 | MS.gene69773:CDS | 40.0% | |
| ! | ACGATTCTGAAAATAAGCGG+TGG | - | chr3.4:77477428-77477447 | None:intergenic | 40.0% |
| ! | AGGAAGCACATGAATGAAAC+CGG | - | chr3.4:77477287-77477306 | None:intergenic | 40.0% |
| ! | AGGGCATCCAACAAATACAT+TGG | - | chr3.4:77478204-77478223 | None:intergenic | 40.0% |
| ! | ATTGAAAGTGCAACCATTGC+AGG | + | chr3.4:77478468-77478487 | MS.gene69773:intron | 40.0% |
| ! | CTATCCCTTTTATTAGGAGC+TGG | + | chr3.4:77478742-77478761 | MS.gene69773:CDS | 40.0% |
| ! | TGACGAAGAAGTTCTGATGA+AGG | - | chr3.4:77477583-77477602 | None:intergenic | 40.0% |
| ! | TTACCACTCTTTTGCATCCT+TGG | - | chr3.4:77478703-77478722 | None:intergenic | 40.0% |
| !!! | ATCTTTTTCAGGGCTTAACG+CGG | - | chr3.4:77477218-77477237 | None:intergenic | 40.0% |
| AAGCACATGAATGAAACCGG+TGG | - | chr3.4:77477284-77477303 | None:intergenic | 45.0% | |
| AAGGTCAATGCAGCTACAAG+CGG | - | chr3.4:77477863-77477882 | None:intergenic | 45.0% | |
| ACCGGTGGATAATATCACAC+CGG | - | chr3.4:77477269-77477288 | None:intergenic | 45.0% | |
| ACCTTAGATGTGGAGCAACA+AGG | + | chr3.4:77477496-77477515 | MS.gene69773:CDS | 45.0% | |
| ATTCTGCGGCTATTAGAGTC+GGG | - | chr3.4:77477066-77477085 | None:intergenic | 45.0% | |
| CATTCTGCGGCTATTAGAGT+CGG | - | chr3.4:77477067-77477086 | None:intergenic | 45.0% | |
| GACACAGGTTAAGAGTCATG+AGG | + | chr3.4:77477471-77477490 | MS.gene69773:CDS | 45.0% | |
| GGTATGACTTTGCCAAGAAG+TGG | - | chr3.4:77477196-77477215 | None:intergenic | 45.0% | |
| GGTGTTTGTATCCCACTTCT+TGG | + | chr3.4:77477181-77477200 | MS.gene69773:CDS | 45.0% | |
| GTGAATGGAAAATCACCCCA+AGG | - | chr3.4:77477352-77477371 | None:intergenic | 45.0% | |
| GTTCATACTCATGCATCCCA+TGG | + | chr3.4:77477529-77477548 | MS.gene69773:CDS | 45.0% | |
| TAATATCACACCGGCAGCAA+AGG | - | chr3.4:77477260-77477279 | None:intergenic | 45.0% | |
| TCATGAGGCAACCTTAGATG+TGG | + | chr3.4:77477486-77477505 | MS.gene69773:CDS | 45.0% | |
| TCCTTGTTGCTCCACATCTA+AGG | - | chr3.4:77477500-77477519 | None:intergenic | 45.0% | |
| TCGTCATAGGGTCATATCAC+AGG | + | chr3.4:77477597-77477616 | MS.gene69773:CDS | 45.0% | |
| ! | TGGGGTGATTTTCCATTCAC+AGG | + | chr3.4:77477352-77477371 | MS.gene69773:CDS | 45.0% |
| !! | ACAAGCGGCCTTATGGTTTT+AGG | - | chr3.4:77477848-77477867 | None:intergenic | 45.0% |
| !!! | TCTTTTTCAGGGCTTAACGC+GGG | - | chr3.4:77477217-77477236 | None:intergenic | 45.0% |
| !!! | TTTTTTGAGGGCATGGGACT+TGG | + | chr3.4:77477890-77477909 | MS.gene69773:CDS | 45.0% |
| !!! | AATATGATTTAATTTTTATA+AGG | + | chr3.4:77477960-77477979 | MS.gene69773:intron | 5.0% |
| ATGGCCATGTGCATGACCAT+GGG | - | chr3.4:77477548-77477567 | None:intergenic | 50.0% | |
| CTCATCACACGTGCATTCTG+CGG | - | chr3.4:77477080-77477099 | None:intergenic | 50.0% | |
| GCCGGTGTGATATTATCCAC+CGG | + | chr3.4:77477265-77477284 | MS.gene69773:CDS | 50.0% | |
| GTGGCTATGTGCACTGCTAT+GGG | + | chr3.4:77477379-77477398 | MS.gene69773:CDS | 50.0% | |
| TGCACGTGTGATGAGGAAGA+TGG | + | chr3.4:77477085-77477104 | MS.gene69773:CDS | 50.0% | |
| TGGCTATGTGCACTGCTATG+GGG | + | chr3.4:77477380-77477399 | MS.gene69773:CDS | 50.0% | |
| TGTGGCTATGTGCACTGCTA+TGG | + | chr3.4:77477378-77477397 | MS.gene69773:CDS | 50.0% | |
| CACTGCTATGGGGTCTCTCA+TGG | + | chr3.4:77477390-77477409 | MS.gene69773:CDS | 55.0% | |
| CATGGCCATGTGCATGACCA+TGG | - | chr3.4:77477549-77477568 | None:intergenic | 55.0% | |
| CGCAGAATGCACGTGTGATG+AGG | + | chr3.4:77477078-77477097 | MS.gene69773:CDS | 55.0% | |
| GCATCCCATGGTCATGCACA+TGG | + | chr3.4:77477541-77477560 | MS.gene69773:CDS | 55.0% | |
| TGCAGCTACAAGCGGCCTTA+TGG | - | chr3.4:77477855-77477874 | None:intergenic | 55.0% | |
| !! | AAGGGCATCAACGCTGACAC+AGG | + | chr3.4:77477456-77477475 | MS.gene69773:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 77477004 | 77478795 | 77477004 | ID=MS.gene69773 |
| chr3.4 | mRNA | 77477004 | 77478795 | 77477004 | ID=MS.gene69773.t1;Parent=MS.gene69773 |
| chr3.4 | exon | 77477004 | 77477618 | 77477004 | ID=MS.gene69773.t1.exon1;Parent=MS.gene69773.t1 |
| chr3.4 | CDS | 77477004 | 77477618 | 77477004 | ID=cds.MS.gene69773.t1;Parent=MS.gene69773.t1 |
| chr3.4 | exon | 77477779 | 77477928 | 77477779 | ID=MS.gene69773.t1.exon2;Parent=MS.gene69773.t1 |
| chr3.4 | CDS | 77477779 | 77477928 | 77477779 | ID=cds.MS.gene69773.t1;Parent=MS.gene69773.t1 |
| chr3.4 | exon | 77478490 | 77478795 | 77478490 | ID=MS.gene69773.t1.exon3;Parent=MS.gene69773.t1 |
| chr3.4 | CDS | 77478490 | 77478795 | 77478490 | ID=cds.MS.gene69773.t1;Parent=MS.gene69773.t1 |
| Gene Sequence |
| Protein sequence |
