Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69928.t1 | XP_003591011.2 | 99.3 | 303 | 2 | 0 | 1 | 303 | 1 | 303 | 4.60E-170 | 607.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69928.t1 | G7I6W7 | 99.3 | 303 | 2 | 0 | 1 | 303 | 1 | 303 | 3.3e-170 | 607.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049378 | MS.gene69928 | 0.807341 | 5.30E-50 | -1.69E-46 |
MS.gene049501 | MS.gene69928 | 0.811432 | 7.02E-51 | -1.69E-46 |
MS.gene04984 | MS.gene69928 | 0.805752 | 1.15E-49 | -1.69E-46 |
MS.gene050226 | MS.gene69928 | 0.82612 | 3.23E-54 | -1.69E-46 |
MS.gene050227 | MS.gene69928 | 0.839916 | 1.19E-57 | -1.69E-46 |
MS.gene050228 | MS.gene69928 | 0.828894 | 6.97E-55 | -1.69E-46 |
MS.gene050442 | MS.gene69928 | 0.821785 | 3.36E-53 | -1.69E-46 |
MS.gene050558 | MS.gene69928 | 0.801012 | 1.10E-48 | -1.69E-46 |
MS.gene050719 | MS.gene69928 | 0.8489 | 4.56E-60 | -1.69E-46 |
MS.gene050721 | MS.gene69928 | 0.847127 | 1.41E-59 | -1.69E-46 |
MS.gene050724 | MS.gene69928 | 0.84958 | 2.95E-60 | -1.69E-46 |
MS.gene050787 | MS.gene69928 | 0.820496 | 6.65E-53 | -1.69E-46 |
MS.gene050824 | MS.gene69928 | 0.818238 | 2.18E-52 | -1.69E-46 |
MS.gene052323 | MS.gene69928 | 0.801882 | 7.30E-49 | -1.69E-46 |
MS.gene052665 | MS.gene69928 | 0.817783 | 2.76E-52 | -1.69E-46 |
MS.gene052896 | MS.gene69928 | 0.820679 | 6.04E-53 | -1.69E-46 |
MS.gene053836 | MS.gene69928 | 0.814803 | 1.28E-51 | -1.69E-46 |
MS.gene054468 | MS.gene69928 | 0.824704 | 6.99E-54 | -1.69E-46 |
MS.gene054473 | MS.gene69928 | 0.825443 | 4.68E-54 | -1.69E-46 |
MS.gene054930 | MS.gene69928 | 0.802836 | 4.64E-49 | -1.69E-46 |
MS.gene056506 | MS.gene69928 | 0.807527 | 4.84E-50 | -1.69E-46 |
MS.gene056875 | MS.gene69928 | 0.803179 | 3.95E-49 | -1.69E-46 |
MS.gene057469 | MS.gene69928 | 0.816094 | 6.60E-52 | -1.69E-46 |
MS.gene060322 | MS.gene69928 | 0.800714 | 1.27E-48 | -1.69E-46 |
MS.gene06052 | MS.gene69928 | 0.817486 | 3.22E-52 | -1.69E-46 |
MS.gene061040 | MS.gene69928 | -0.804691 | 1.91E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69928.t1 | MTR_1g081260 | 99.340 | 303 | 2 | 0 | 1 | 303 | 1 | 303 | 0.0 | 616 |
MS.gene69928.t1 | MTR_7g114790 | 71.704 | 311 | 73 | 7 | 1 | 302 | 1 | 305 | 4.32e-155 | 436 |
MS.gene69928.t1 | MTR_7g095100 | 64.401 | 309 | 102 | 4 | 1 | 303 | 1 | 307 | 6.00e-143 | 405 |
MS.gene69928.t1 | MTR_3g076610 | 35.636 | 275 | 151 | 3 | 5 | 257 | 8 | 278 | 2.16e-61 | 198 |
MS.gene69928.t1 | MTR_5g069570 | 37.647 | 255 | 155 | 3 | 10 | 260 | 14 | 268 | 3.55e-60 | 194 |
MS.gene69928.t1 | MTR_4g104760 | 36.122 | 263 | 152 | 6 | 4 | 253 | 7 | 266 | 2.86e-59 | 192 |
MS.gene69928.t1 | MTR_4g055230 | 36.760 | 321 | 166 | 10 | 1 | 301 | 1 | 304 | 1.59e-57 | 187 |
MS.gene69928.t1 | MTR_3g082430 | 40.773 | 233 | 133 | 3 | 26 | 253 | 12 | 244 | 1.62e-57 | 187 |
MS.gene69928.t1 | MTR_2g084965 | 38.060 | 268 | 147 | 7 | 6 | 254 | 8 | 275 | 1.34e-48 | 164 |
MS.gene69928.t1 | MTR_3g106250 | 36.090 | 266 | 143 | 8 | 4 | 253 | 6 | 260 | 5.62e-48 | 164 |
MS.gene69928.t1 | MTR_7g103900 | 32.822 | 326 | 178 | 10 | 1 | 302 | 1 | 309 | 9.51e-48 | 162 |
MS.gene69928.t1 | MTR_5g096570 | 33.564 | 289 | 176 | 5 | 23 | 301 | 1178 | 1460 | 1.78e-47 | 171 |
MS.gene69928.t1 | MTR_8g069535 | 80.488 | 82 | 15 | 1 | 8 | 89 | 9 | 89 | 1.07e-32 | 121 |
MS.gene69928.t1 | MTR_8g069535 | 66.102 | 59 | 20 | 0 | 176 | 234 | 89 | 147 | 5.51e-17 | 79.0 |
MS.gene69928.t1 | MTR_1g013100 | 29.643 | 280 | 154 | 13 | 4 | 261 | 8 | 266 | 1.30e-32 | 123 |
MS.gene69928.t1 | MTR_7g103900 | 29.614 | 233 | 139 | 7 | 1 | 212 | 1 | 229 | 5.45e-27 | 105 |
MS.gene69928.t1 | MTR_5g069550 | 32.143 | 168 | 98 | 2 | 10 | 175 | 14 | 167 | 4.04e-24 | 97.1 |
MS.gene69928.t1 | MTR_0716s0040 | 58.228 | 79 | 11 | 1 | 195 | 273 | 15 | 71 | 1.69e-22 | 89.4 |
MS.gene69928.t1 | MTR_0716s0020 | 71.154 | 52 | 11 | 1 | 56 | 107 | 3 | 50 | 3.85e-16 | 72.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69928.t1 | AT5G28150 | 65.461 | 304 | 89 | 4 | 1 | 303 | 1 | 289 | 3.29e-138 | 392 |
MS.gene69928.t1 | AT3G04860 | 64.052 | 306 | 90 | 6 | 1 | 303 | 1 | 289 | 9.02e-134 | 381 |
MS.gene69928.t1 | AT2G04220 | 41.200 | 250 | 142 | 3 | 14 | 259 | 12 | 260 | 4.64e-65 | 207 |
MS.gene69928.t1 | AT4G12690 | 41.975 | 243 | 135 | 4 | 15 | 253 | 9 | 249 | 7.45e-64 | 203 |
MS.gene69928.t1 | AT4G12690 | 41.975 | 243 | 135 | 4 | 15 | 253 | 9 | 249 | 7.45e-64 | 203 |
MS.gene69928.t1 | AT5G48270 | 33.639 | 327 | 172 | 12 | 5 | 303 | 13 | 322 | 1.81e-51 | 172 |
MS.gene69928.t1 | AT2G27770 | 33.134 | 335 | 174 | 10 | 1 | 301 | 1 | 319 | 2.91e-48 | 164 |
MS.gene69928.t1 | AT3G13229 | 34.468 | 235 | 143 | 4 | 33 | 256 | 8 | 242 | 8.23e-44 | 151 |
MS.gene69928.t1 | AT5G11000 | 36.905 | 252 | 118 | 9 | 31 | 253 | 33 | 272 | 1.64e-41 | 148 |
MS.gene69928.t1 | AT2G25200 | 28.185 | 259 | 148 | 8 | 6 | 242 | 16 | 258 | 2.94e-29 | 114 |
MS.gene69928.t1 | AT2G36470 | 26.471 | 272 | 145 | 8 | 1 | 241 | 1 | 248 | 8.47e-20 | 88.2 |
Find 42 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTTCTCTCAGGATAAAATT+TGG | 0.148503 | 1.4:-65949946 | MS.gene69928:CDS |
AAACAAATGGTTCTTCTTCT+TGG | 0.224208 | 1.4:-65950328 | MS.gene69928:CDS |
TTTATTGGGATGTTTATAAT+TGG | 0.245969 | 1.4:-65950015 | MS.gene69928:CDS |
GTCTTGAAGTTGAGGTTTAT+TGG | 0.251621 | 1.4:-65950030 | MS.gene69928:CDS |
AACACCTTGTTGCTGCAATT+TGG | 0.305444 | 1.4:+65949859 | None:intergenic |
GATCTTTCTTCAGCTAGATT+TGG | 0.328970 | 1.4:-65950400 | MS.gene69928:CDS |
TTTCTCTCAGGATAAAATTT+GGG | 0.343648 | 1.4:-65949945 | MS.gene69928:CDS |
GTTTACCAGTGTTCAATTAG+AGG | 0.364536 | 1.4:-65950604 | MS.gene69928:CDS |
AGGTTGAAGTGGAAGTTTAG+AGG | 0.371290 | 1.4:-65950076 | MS.gene69928:CDS |
TCTTGAAGTTGAGGTTTATT+GGG | 0.375109 | 1.4:-65950029 | MS.gene69928:CDS |
TTCTTCTTCTTGGTGATTTG+AGG | 0.384951 | 1.4:-65950318 | MS.gene69928:CDS |
AAAACATTTGCATCAGAAAC+AGG | 0.388646 | 1.4:+65949914 | None:intergenic |
TTCAAGACCATCCACAAGTA+TGG | 0.397921 | 1.4:+65950045 | None:intergenic |
AAGCAAAACTGCTCAGAATC+TGG | 0.403487 | 1.4:-65950635 | MS.gene69928:CDS |
GTTGTAAGATTGATGTGTAT+TGG | 0.407371 | 1.4:-65950423 | MS.gene69928:CDS |
CTTGCTTGATTACTATTACA+TGG | 0.414169 | 1.4:-65950576 | MS.gene69928:CDS |
GTGATCCTTGTCTTATAGTT+CGG | 0.427025 | 1.4:-65950129 | MS.gene69928:CDS |
TTGTAAGATTGATGTGTATT+GGG | 0.428969 | 1.4:-65950422 | MS.gene69928:CDS |
GTTTAGAACATGTTTCTCTC+AGG | 0.471644 | 1.4:-65949957 | MS.gene69928:CDS |
TCTTGGTGATTTGAGGAAAG+AGG | 0.473028 | 1.4:-65950311 | MS.gene69928:CDS |
TACATGGAGCAAGAGTTTGA+TGG | 0.480341 | 1.4:-65950560 | MS.gene69928:CDS |
TAAAGTTGATATAAAACCTT+GGG | 0.481774 | 1.4:-65950488 | MS.gene69928:CDS |
TCTTCAGCTAGATTTGGTGT+TGG | 0.510529 | 1.4:-65950394 | MS.gene69928:CDS |
AGTAGTAGTTGATAAACAAA+TGG | 0.512418 | 1.4:-65950341 | MS.gene69928:CDS |
AGCAAGAGTTTGATGGGTCA+AGG | 0.521441 | 1.4:-65950553 | MS.gene69928:CDS |
TGTGGATGGTCTTGAAGTTG+AGG | 0.522288 | 1.4:-65950038 | MS.gene69928:CDS |
AAAACAGCATTCAAAGGTAA+AGG | 0.522755 | 1.4:+65950265 | None:intergenic |
CGATAGCAAAACTGTGATGC+AGG | 0.523931 | 1.4:-65950104 | MS.gene69928:CDS |
ACATGGAGCAAGAGTTTGAT+GGG | 0.529745 | 1.4:-65950559 | MS.gene69928:CDS |
TGCAGTGGTCTTTCTCTCAG+AGG | 0.536201 | 1.4:-65949892 | MS.gene69928:CDS |
TGCAGGTGAAGAGGTTGAAG+TGG | 0.541978 | 1.4:-65950087 | MS.gene69928:CDS |
TGTTGGACCTGAACCATTGG+AGG | 0.549909 | 1.4:-65950377 | MS.gene69928:CDS |
TGGTGTTGGACCTGAACCAT+TGG | 0.554528 | 1.4:-65950380 | MS.gene69928:CDS |
GTAAAGTTGATATAAAACCT+TGG | 0.555894 | 1.4:-65950489 | MS.gene69928:CDS |
AAATTGCAGCAACAAGGTGT+TGG | 0.560217 | 1.4:-65949857 | MS.gene69928:CDS |
AGGAAATCATACCATACTTG+TGG | 0.576851 | 1.4:-65950056 | MS.gene69928:CDS |
AATCATACCATACTTGTGGA+TGG | 0.616419 | 1.4:-65950052 | MS.gene69928:CDS |
ATCTACCTCTAATTGAACAC+TGG | 0.618529 | 1.4:+65950599 | None:intergenic |
GAGACCAAATTGCAGCAACA+AGG | 0.620010 | 1.4:-65949863 | MS.gene69928:CDS |
TTTCTCTTAGAAAACACCCA+AGG | 0.637931 | 1.4:+65950472 | None:intergenic |
AAACTGTGATGCAGGTGAAG+AGG | 0.662598 | 1.4:-65950096 | MS.gene69928:CDS |
TCGATCCGAACTATAAGACA+AGG | 0.676375 | 1.4:+65950124 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTATTGGGATGTTTATAAT+TGG | - | chr1.4:65950514-65950533 | MS.gene69928:CDS | 20.0% |
!!! | TAAAGTTGATATAAAACCTT+GGG | - | chr1.4:65950041-65950060 | MS.gene69928:CDS | 20.0% |
! | TTGTAAGATTGATGTGTATT+GGG | - | chr1.4:65950107-65950126 | MS.gene69928:CDS | 25.0% |
! | TTTCTCTCAGGATAAAATTT+GGG | - | chr1.4:65950584-65950603 | MS.gene69928:CDS | 25.0% |
!!! | AGTAGTAGTTGATAAACAAA+TGG | - | chr1.4:65950188-65950207 | MS.gene69928:CDS | 25.0% |
!!! | GATGTTTATAATTGGCTTTT+TGG | - | chr1.4:65950522-65950541 | MS.gene69928:CDS | 25.0% |
!!! | GTAAAGTTGATATAAAACCT+TGG | - | chr1.4:65950040-65950059 | MS.gene69928:CDS | 25.0% |
!!! | GTTTTTGGTAAGAAGTTTTT+TGG | - | chr1.4:65950306-65950325 | MS.gene69928:CDS | 25.0% |
!!! | TAAGAAGTTTTTTGGTAACA+AGG | - | chr1.4:65950314-65950333 | MS.gene69928:CDS | 25.0% |
AAAACAGCATTCAAAGGTAA+AGG | + | chr1.4:65950267-65950286 | None:intergenic | 30.0% | |
AAAACATTTGCATCAGAAAC+AGG | + | chr1.4:65950618-65950637 | None:intergenic | 30.0% | |
AAACAAATGGTTCTTCTTCT+TGG | - | chr1.4:65950201-65950220 | MS.gene69928:CDS | 30.0% | |
CTTGCTTGATTACTATTACA+TGG | - | chr1.4:65949953-65949972 | MS.gene69928:CDS | 30.0% | |
GTTGTAAGATTGATGTGTAT+TGG | - | chr1.4:65950106-65950125 | MS.gene69928:CDS | 30.0% | |
GTTTCTCTCAGGATAAAATT+TGG | - | chr1.4:65950583-65950602 | MS.gene69928:CDS | 30.0% | |
TCTTGAAGTTGAGGTTTATT+GGG | - | chr1.4:65950500-65950519 | MS.gene69928:CDS | 30.0% | |
! | GCTAAGAAAGAACATGTTTT+TGG | - | chr1.4:65950291-65950310 | MS.gene69928:CDS | 30.0% |
!! | AAGGATTTTCCATCTTGTTT+TGG | - | chr1.4:65949823-65949842 | MS.gene69928:CDS | 30.0% |
AAAAAAACCTCCAATGGTTC+AGG | + | chr1.4:65950162-65950181 | None:intergenic | 35.0% | |
AATCATACCATACTTGTGGA+TGG | - | chr1.4:65950477-65950496 | MS.gene69928:CDS | 35.0% | |
AGGAAATCATACCATACTTG+TGG | - | chr1.4:65950473-65950492 | MS.gene69928:CDS | 35.0% | |
ATCTACCTCTAATTGAACAC+TGG | + | chr1.4:65949933-65949952 | None:intergenic | 35.0% | |
CCTACAAAAAAAACCTCCAA+TGG | + | chr1.4:65950168-65950187 | None:intergenic | 35.0% | |
GATCTTTCTTCAGCTAGATT+TGG | - | chr1.4:65950129-65950148 | MS.gene69928:CDS | 35.0% | |
GCAACAAAAACAGCATTCAA+AGG | + | chr1.4:65950273-65950292 | None:intergenic | 35.0% | |
GTCTTGAAGTTGAGGTTTAT+TGG | - | chr1.4:65950499-65950518 | MS.gene69928:CDS | 35.0% | |
GTGATCCTTGTCTTATAGTT+CGG | - | chr1.4:65950400-65950419 | MS.gene69928:CDS | 35.0% | |
GTTTACCAGTGTTCAATTAG+AGG | - | chr1.4:65949925-65949944 | MS.gene69928:CDS | 35.0% | |
TTTCTCTTAGAAAACACCCA+AGG | + | chr1.4:65950060-65950079 | None:intergenic | 35.0% | |
! | AAGGTTGTGTTTTGTGACAA+TGG | - | chr1.4:65950333-65950352 | MS.gene69928:CDS | 35.0% |
! | GCATTTTCACCAAAACAAGA+TGG | + | chr1.4:65949835-65949854 | None:intergenic | 35.0% |
! | GTTTAGAACATGTTTCTCTC+AGG | - | chr1.4:65950572-65950591 | MS.gene69928:CDS | 35.0% |
! | TCTCACATGTTTTGTATGCT+TGG | - | chr1.4:65950697-65950716 | MS.gene69928:CDS | 35.0% |
! | TTCTTCTTCTTGGTGATTTG+AGG | - | chr1.4:65950211-65950230 | MS.gene69928:CDS | 35.0% |
! | TTTTGGTGAAAATGCAGTTC+AGG | - | chr1.4:65949840-65949859 | MS.gene69928:CDS | 35.0% |
!! | TGGCTTTTTGGTACATCTTT+TGG | - | chr1.4:65950534-65950553 | MS.gene69928:CDS | 35.0% |
!! | TGGGTGTTTTCTAAGAGAAA+GGG | - | chr1.4:65950060-65950079 | MS.gene69928:CDS | 35.0% |
!! | TTGGGTGTTTTCTAAGAGAA+AGG | - | chr1.4:65950059-65950078 | MS.gene69928:CDS | 35.0% |
!!! | CCATTGGAGGTTTTTTTTGT+AGG | - | chr1.4:65950165-65950184 | MS.gene69928:CDS | 35.0% |
AAATTGCAGCAACAAGGTGT+TGG | - | chr1.4:65950672-65950691 | MS.gene69928:CDS | 40.0% | |
AACACCTTGTTGCTGCAATT+TGG | + | chr1.4:65950673-65950692 | None:intergenic | 40.0% | |
AAGCAAAACTGCTCAGAATC+TGG | - | chr1.4:65949894-65949913 | MS.gene69928:CDS | 40.0% | |
ACATGGAGCAAGAGTTTGAT+GGG | - | chr1.4:65949970-65949989 | MS.gene69928:CDS | 40.0% | |
AGGTTGAAGTGGAAGTTTAG+AGG | - | chr1.4:65950453-65950472 | MS.gene69928:CDS | 40.0% | |
TACATGGAGCAAGAGTTTGA+TGG | - | chr1.4:65949969-65949988 | MS.gene69928:CDS | 40.0% | |
TCGATCCGAACTATAAGACA+AGG | + | chr1.4:65950408-65950427 | None:intergenic | 40.0% | |
TTCAAGACCATCCACAAGTA+TGG | + | chr1.4:65950487-65950506 | None:intergenic | 40.0% | |
! | CTGATGCAAATGTTTTGCAG+TGG | - | chr1.4:65950622-65950641 | MS.gene69928:CDS | 40.0% |
! | TCTTGGTGATTTGAGGAAAG+AGG | - | chr1.4:65950218-65950237 | MS.gene69928:CDS | 40.0% |
!! | ATGGGTCAAGGTTTTAGTGT+TGG | - | chr1.4:65949988-65950007 | MS.gene69928:CDS | 40.0% |
!! | TCTTCAGCTAGATTTGGTGT+TGG | - | chr1.4:65950135-65950154 | MS.gene69928:CDS | 40.0% |
AAACTGTGATGCAGGTGAAG+AGG | - | chr1.4:65950433-65950452 | MS.gene69928:CDS | 45.0% | |
CGATAGCAAAACTGTGATGC+AGG | - | chr1.4:65950425-65950444 | MS.gene69928:CDS | 45.0% | |
GAGACCAAATTGCAGCAACA+AGG | - | chr1.4:65950666-65950685 | MS.gene69928:CDS | 45.0% | |
! | AGCAAGAGTTTGATGGGTCA+AGG | - | chr1.4:65949976-65949995 | MS.gene69928:CDS | 45.0% |
! | TGTGGATGGTCTTGAAGTTG+AGG | - | chr1.4:65950491-65950510 | MS.gene69928:CDS | 45.0% |
TGCAGGTGAAGAGGTTGAAG+TGG | - | chr1.4:65950442-65950461 | MS.gene69928:CDS | 50.0% | |
TGCAGTGGTCTTTCTCTCAG+AGG | - | chr1.4:65950637-65950656 | MS.gene69928:CDS | 50.0% | |
TGTTGGACCTGAACCATTGG+AGG | - | chr1.4:65950152-65950171 | MS.gene69928:CDS | 50.0% | |
! | TGGTGTTGGACCTGAACCAT+TGG | - | chr1.4:65950149-65950168 | MS.gene69928:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 65949820 | 65950731 | 65949820 | ID=MS.gene69928 |
chr1.4 | mRNA | 65949820 | 65950731 | 65949820 | ID=MS.gene69928.t1;Parent=MS.gene69928 |
chr1.4 | exon | 65949820 | 65950731 | 65949820 | ID=MS.gene69928.t1.exon1;Parent=MS.gene69928.t1 |
chr1.4 | CDS | 65949820 | 65950731 | 65949820 | ID=cds.MS.gene69928.t1;Parent=MS.gene69928.t1 |
Gene Sequence |
Protein sequence |