Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69933.t1 | XP_013468989.1 | 96.7 | 181 | 6 | 0 | 1 | 181 | 1 | 181 | 1.10E-102 | 382.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69933.t1 | A0A072VN18 | 96.7 | 181 | 6 | 0 | 1 | 181 | 1 | 181 | 7.7e-103 | 382.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050961 | MS.gene69933 | 0.845001 | 5.33E-59 | -1.69E-46 |
| MS.gene051699 | MS.gene69933 | 0.808529 | 2.96E-50 | -1.69E-46 |
| MS.gene052016 | MS.gene69933 | 0.80533 | 1.41E-49 | -1.69E-46 |
| MS.gene052533 | MS.gene69933 | 0.824672 | 7.11E-54 | -1.69E-46 |
| MS.gene052570 | MS.gene69933 | 0.817759 | 2.79E-52 | -1.69E-46 |
| MS.gene055229 | MS.gene69933 | 0.807768 | 4.30E-50 | -1.69E-46 |
| MS.gene056082 | MS.gene69933 | 0.805942 | 1.05E-49 | -1.69E-46 |
| MS.gene056677 | MS.gene69933 | 0.825656 | 4.16E-54 | -1.69E-46 |
| MS.gene057102 | MS.gene69933 | 0.809025 | 2.32E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene69933 | -0.825304 | 5.04E-54 | -1.69E-46 |
| MS.gene060522 | MS.gene69933 | 0.810197 | 1.30E-50 | -1.69E-46 |
| MS.gene061188 | MS.gene69933 | 0.804011 | 2.65E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69933.t1 | MTR_1g080990 | 96.685 | 181 | 6 | 0 | 1 | 181 | 1 | 181 | 3.75e-130 | 365 |
| MS.gene69933.t1 | MTR_1g080990 | 98.065 | 155 | 3 | 0 | 1 | 155 | 1 | 155 | 3.02e-112 | 318 |
| MS.gene69933.t1 | MTR_1g080990 | 72.928 | 181 | 7 | 1 | 1 | 181 | 1 | 139 | 2.36e-85 | 250 |
| MS.gene69933.t1 | MTR_7g114890 | 50.270 | 185 | 81 | 4 | 1 | 174 | 1 | 185 | 7.43e-56 | 177 |
| MS.gene69933.t1 | MTR_7g114890 | 50.270 | 185 | 81 | 4 | 1 | 174 | 1 | 185 | 8.09e-56 | 177 |
| MS.gene69933.t1 | MTR_1g041410 | 49.057 | 159 | 76 | 2 | 12 | 166 | 10 | 167 | 4.97e-50 | 162 |
| MS.gene69933.t1 | MTR_7g114890 | 48.503 | 167 | 75 | 4 | 1 | 156 | 1 | 167 | 5.59e-46 | 151 |
| MS.gene69933.t1 | MTR_7g114880 | 40.909 | 88 | 47 | 3 | 1 | 85 | 1 | 86 | 2.66e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69933.t1 | AT4G14746 | 37.423 | 163 | 90 | 3 | 10 | 166 | 10 | 166 | 7.68e-32 | 116 |
| MS.gene69933.t1 | AT4G14746 | 33.645 | 107 | 60 | 3 | 10 | 111 | 10 | 110 | 1.11e-12 | 64.7 |
Find 60 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAGAAGATTATAATAAT+TGG | 0.152675 | 1.4:+65878080 | None:intergenic |
| TTTGTTTGTGAATGCGATTC+TGG | 0.220907 | 1.4:-65878881 | MS.gene69933:CDS |
| GTGTGTATGTGTCTTGTTCT+TGG | 0.257626 | 1.4:+65878119 | None:intergenic |
| TTCTGATGATGTGTCGAATT+TGG | 0.277149 | 1.4:-65877632 | MS.gene69933:CDS |
| TTGAGAAGATTATAATAATT+GGG | 0.290960 | 1.4:+65878081 | None:intergenic |
| TCCCCAGCAAGCTCAATCTT+TGG | 0.317543 | 1.4:-65877606 | MS.gene69933:CDS |
| CCTCCAAAGATTGAGCTTGC+TGG | 0.322376 | 1.4:+65877603 | None:intergenic |
| TGAAACTTTAATTCCAAGTC+TGG | 0.344971 | 1.4:+65877891 | None:intergenic |
| ATGGGTTCTTTCAAGTTGTT+GGG | 0.370656 | 1.4:-65879238 | MS.gene69933:CDS |
| CTTGTAGGTAGCTTGAATTA+TGG | 0.388414 | 1.4:-65878641 | MS.gene69933:intron |
| AATGGGTTCTTTCAAGTTGT+TGG | 0.394087 | 1.4:-65879239 | MS.gene69933:CDS |
| CTCCAAAGATTGAGCTTGCT+GGG | 0.403250 | 1.4:+65877604 | None:intergenic |
| ATATATCATCATCTTCATCT+TGG | 0.410673 | 1.4:+65878846 | None:intergenic |
| ATTAAAGTTTCAAATTCAAC+CGG | 0.417259 | 1.4:-65877880 | MS.gene69933:CDS |
| TATATCATCATCTTCATCTT+GGG | 0.418577 | 1.4:+65878847 | None:intergenic |
| TTGCGAGGTAAAGTCTTCTC+TGG | 0.418920 | 1.4:+65878593 | None:intergenic |
| TCTGGAACTGGAGGAGGTGC+TGG | 0.422912 | 1.4:+65878611 | None:intergenic |
| GGATCTGATTGTTCCAGACT+TGG | 0.423037 | 1.4:-65877904 | MS.gene69933:CDS |
| AAAATCCCCTTTGGCAGCCA+TGG | 0.429161 | 1.4:+65879183 | None:intergenic |
| GGTAAAGTCTTCTCTGGAAC+TGG | 0.430461 | 1.4:+65878599 | None:intergenic |
| ACTGTGTTGTTGATTTCAAC+GGG | 0.460186 | 1.4:-65877564 | MS.gene69933:CDS |
| TACTTCCCATGGCTGCCAAA+GGG | 0.472045 | 1.4:-65879189 | MS.gene69933:CDS |
| GTCTTCTCTGGAACTGGAGG+AGG | 0.479737 | 1.4:+65878605 | None:intergenic |
| CACTGTGTTGTTGATTTCAA+CGG | 0.481718 | 1.4:-65877565 | MS.gene69933:CDS |
| TCTTTGGAGGAAGGTTCCAT+TGG | 0.490994 | 1.4:-65877590 | MS.gene69933:CDS |
| AGCTAGCTAGGATGCTTAGA+TGG | 0.491324 | 1.4:-65877528 | MS.gene69933:CDS |
| TTTCAACGGGTATGGTTATG+TGG | 0.491371 | 1.4:-65877551 | MS.gene69933:CDS |
| GTTGTTGATTTCAACGGGTA+TGG | 0.491561 | 1.4:-65877559 | MS.gene69933:CDS |
| CCAGCAAGCTCAATCTTTGG+AGG | 0.494478 | 1.4:-65877603 | MS.gene69933:CDS |
| ATCATCAACAAAATCCCCTT+TGG | 0.497557 | 1.4:+65879174 | None:intergenic |
| ATGGTTATGTGGAGCTAGCT+AGG | 0.499858 | 1.4:-65877540 | MS.gene69933:CDS |
| GTTGTTGGGTCTTATAGCCA+TGG | 0.505786 | 1.4:-65879224 | MS.gene69933:CDS |
| TGAGAAGATTATAATAATTG+GGG | 0.515021 | 1.4:+65878082 | None:intergenic |
| ATTCACAAACAAAGTTCAAA+GGG | 0.522384 | 1.4:+65878891 | None:intergenic |
| TTTGTGAATGCGATTCTGGC+TGG | 0.522677 | 1.4:-65878877 | MS.gene69933:CDS |
| ACCATGACTCTCAACATCTC+CGG | 0.532665 | 1.4:+65877861 | None:intergenic |
| CATTCACAAACAAAGTTCAA+AGG | 0.535528 | 1.4:+65878890 | None:intergenic |
| CTACTTCCCATGGCTGCCAA+AGG | 0.546322 | 1.4:-65879190 | MS.gene69933:CDS |
| TCTCATGTTACTACTTCCCA+TGG | 0.547836 | 1.4:-65879200 | MS.gene69933:CDS |
| TATTGGGCATATTGTGGAGA+AGG | 0.548373 | 1.4:-65878150 | MS.gene69933:CDS |
| CAAGCTCAATCTTTGGAGGA+AGG | 0.555181 | 1.4:-65877599 | MS.gene69933:CDS |
| AGAAAAGGTTTGTGAAGAAG+TGG | 0.556344 | 1.4:-65878951 | MS.gene69933:CDS |
| AAATCCCCTTTGGCAGCCAT+GGG | 0.560106 | 1.4:+65879184 | None:intergenic |
| TCAACAACACAGTGATCCAA+TGG | 0.563270 | 1.4:+65877574 | None:intergenic |
| GCTTGCTATTGGGCATATTG+TGG | 0.565530 | 1.4:-65878156 | MS.gene69933:CDS |
| ACCGGAGATGTTGAGAGTCA+TGG | 0.572906 | 1.4:-65877862 | MS.gene69933:intron |
| GAACTGGAGGAGGTGCTGGT+TGG | 0.589415 | 1.4:+65878615 | None:intergenic |
| GAAGAAGTGGAGTGTGGGAA+AGG | 0.596466 | 1.4:-65878938 | MS.gene69933:CDS |
| GCTTACATTCACTGTAACAA+GGG | 0.603257 | 1.4:+65878046 | None:intergenic |
| TCCAAAGATTGAGCTTGCTG+GGG | 0.605382 | 1.4:+65877605 | None:intergenic |
| TGCTTACATTCACTGTAACA+AGG | 0.610685 | 1.4:+65878045 | None:intergenic |
| ACTTCCCATGGCTGCCAAAG+GGG | 0.616013 | 1.4:-65879188 | MS.gene69933:CDS |
| AAAGTCTTCTCTGGAACTGG+AGG | 0.629011 | 1.4:+65878602 | None:intergenic |
| GTTTGTGAAGAAGTGGAGTG+TGG | 0.633621 | 1.4:-65878944 | MS.gene69933:CDS |
| TTTGTGAAGAAGTGGAGTGT+GGG | 0.637331 | 1.4:-65878943 | MS.gene69933:CDS |
| TTACATTGAGGAATGACACA+TGG | 0.645633 | 1.4:+65878806 | None:intergenic |
| GTTACACTTACGATCAAAAG+CGG | 0.661338 | 1.4:+65878565 | None:intergenic |
| AAGTAGTAACATGAGAACCA+TGG | 0.695164 | 1.4:+65879207 | None:intergenic |
| TCAAAAGCGGAAATATTGCG+AGG | 0.697244 | 1.4:+65878578 | None:intergenic |
| GTGTGGGAAAGGAAACTGTG+TGG | 0.765418 | 1.4:-65878927 | MS.gene69933:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAACTTAATTTTTTTTATGA+AGG | - | chr1.4:65878038-65878057 | MS.gene69933:intron | 10.0% |
| !! | ATTGAGAAGATTATAATAAT+TGG | + | chr1.4:65878671-65878690 | None:intergenic | 15.0% |
| !! | CAAAATAACTGAATAAATAA+AGG | + | chr1.4:65878737-65878756 | None:intergenic | 15.0% |
| !! | TATATATGCATTAGATATAT+AGG | + | chr1.4:65877644-65877663 | None:intergenic | 15.0% |
| !! | TTGAGAAGATTATAATAATT+GGG | + | chr1.4:65878670-65878689 | None:intergenic | 15.0% |
| !!! | AAAGGTTCATAATTTTTTTT+TGG | - | chr1.4:65878423-65878442 | MS.gene69933:intron | 15.0% |
| !! | AACCATATTATCAATTCAAA+AGG | - | chr1.4:65878405-65878424 | MS.gene69933:intron | 20.0% |
| !! | ACTGAATAAATAAAGGTTTA+AGG | + | chr1.4:65878730-65878749 | None:intergenic | 20.0% |
| !! | ATATCCATATATATATGTCA+CGG | + | chr1.4:65877768-65877787 | None:intergenic | 20.0% |
| !! | ATATCTAATGCATATATACA+TGG | - | chr1.4:65877646-65877665 | MS.gene69933:CDS | 20.0% |
| !! | ATTAAAGTTTCAAATTCAAC+CGG | - | chr1.4:65878868-65878887 | MS.gene69933:CDS | 20.0% |
| !! | TATTCTATCATTTATCTTGT+AGG | - | chr1.4:65878092-65878111 | MS.gene69933:CDS | 20.0% |
| !! | TGAGAAGATTATAATAATTG+GGG | + | chr1.4:65878669-65878688 | None:intergenic | 20.0% |
| !! | TTCATATTATATGCACAAAA+AGG | - | chr1.4:65878454-65878473 | MS.gene69933:intron | 20.0% |
| !!! | AAATTTTGCTAGTTTTCTTA+TGG | - | chr1.4:65879044-65879063 | MS.gene69933:intron | 20.0% |
| !!! | AACCTTTTGAATTGATAATA+TGG | + | chr1.4:65878410-65878429 | None:intergenic | 20.0% |
| !!! | GGTTCAAGATTTTTAAATTT+AGG | - | chr1.4:65879012-65879031 | MS.gene69933:intron | 20.0% |
| !!! | TTATTCAGTTATTTTGACAA+TGG | - | chr1.4:65878741-65878760 | MS.gene69933:intron | 20.0% |
| ! | AATTGAAGTTCATTAACACT+AGG | - | chr1.4:65878314-65878333 | MS.gene69933:intron | 25.0% |
| ! | AGAGATTGAAATTTACATTG+AGG | + | chr1.4:65877957-65877976 | None:intergenic | 25.0% |
| ! | ATATATCATCATCTTCATCT+TGG | + | chr1.4:65877905-65877924 | None:intergenic | 25.0% |
| ! | ATTCACAAACAAAGTTCAAA+GGG | + | chr1.4:65877860-65877879 | None:intergenic | 25.0% |
| ! | ATTGAAGTTCATTAACACTA+GGG | - | chr1.4:65878315-65878334 | MS.gene69933:intron | 25.0% |
| ! | CAAGATAAATGATAGAATAG+AGG | + | chr1.4:65878091-65878110 | None:intergenic | 25.0% |
| ! | CAAGTAAATAAGAGTTAGTA+AGG | + | chr1.4:65877986-65878005 | None:intergenic | 25.0% |
| ! | GGATATATTAATTGCAGAAA+AGG | - | chr1.4:65877782-65877801 | MS.gene69933:intron | 25.0% |
| ! | TATATCATCATCTTCATCTT+GGG | + | chr1.4:65877904-65877923 | None:intergenic | 25.0% |
| ! | TTAACCGTGACATATATATA+TGG | - | chr1.4:65877761-65877780 | MS.gene69933:intron | 25.0% |
| !!! | AATATGGTTCAGTTTTTTTG+TGG | + | chr1.4:65878394-65878413 | None:intergenic | 25.0% |
| !!! | ATATTTTTGTAGCTTGCTAT+TGG | - | chr1.4:65878581-65878600 | MS.gene69933:CDS | 25.0% |
| !!! | TATTTTTGTAGCTTGCTATT+GGG | - | chr1.4:65878582-65878601 | MS.gene69933:CDS | 25.0% |
| !!! | TTAAATTTTGAAGGTACTCT+TGG | - | chr1.4:65878823-65878842 | MS.gene69933:CDS | 25.0% |
| AAAAATGAGTTTACGTACCA+AGG | + | chr1.4:65877602-65877621 | None:intergenic | 30.0% | |
| AACACAGAAATTGTTACCAA+CGG | - | chr1.4:65878981-65879000 | MS.gene69933:intron | 30.0% | |
| ACAAAAAGGTTTCATGAGTT+TGG | - | chr1.4:65878468-65878487 | MS.gene69933:intron | 30.0% | |
| AGAAGAATATTGACCAAACA+TGG | - | chr1.4:65878781-65878800 | MS.gene69933:intron | 30.0% | |
| AGTAAAGTCTTGCTAAAATC+AGG | - | chr1.4:65878257-65878276 | MS.gene69933:intron | 30.0% | |
| CATTCACAAACAAAGTTCAA+AGG | + | chr1.4:65877861-65877880 | None:intergenic | 30.0% | |
| CCAAGATATTAATCCATGTT+TGG | + | chr1.4:65878797-65878816 | None:intergenic | 30.0% | |
| GTAAATAAGAGTTAGTAAGG+AGG | + | chr1.4:65877983-65878002 | None:intergenic | 30.0% | |
| TGAAACTTTAATTCCAAGTC+TGG | + | chr1.4:65878860-65878879 | None:intergenic | 30.0% | |
| TGATAGAATAGAGGAGATTT+AGG | + | chr1.4:65878082-65878101 | None:intergenic | 30.0% | |
| TGGTAACAATTTCTGTGTTA+GGG | + | chr1.4:65878980-65878999 | None:intergenic | 30.0% | |
| TTGAAGTTCATTAACACTAG+GGG | - | chr1.4:65878316-65878335 | MS.gene69933:intron | 30.0% | |
| ! | AACATGGATTAATATCTTGG+TGG | - | chr1.4:65878797-65878816 | MS.gene69933:intron | 30.0% |
| ! | CCAAACATGGATTAATATCT+TGG | - | chr1.4:65878794-65878813 | MS.gene69933:intron | 30.0% |
| ! | TTGGTAACAATTTCTGTGTT+AGG | + | chr1.4:65878981-65879000 | None:intergenic | 30.0% |
| !! | ACTTAACTCTTTGTTGACTT+TGG | - | chr1.4:65878209-65878228 | MS.gene69933:intron | 30.0% |
| !!! | TGGTGGACTTTAAATTTTGA+AGG | - | chr1.4:65878814-65878833 | MS.gene69933:CDS | 30.0% |
| AAGTAGTAACATGAGAACCA+TGG | + | chr1.4:65877544-65877563 | None:intergenic | 35.0% | |
| AGAAAAGGTTTGTGAAGAAG+TGG | - | chr1.4:65877797-65877816 | MS.gene69933:intron | 35.0% | |
| ATCATCAACAAAATCCCCTT+TGG | + | chr1.4:65877577-65877596 | None:intergenic | 35.0% | |
| ATCCATAAACTGAACCAAAC+TGG | - | chr1.4:65878367-65878386 | MS.gene69933:intron | 35.0% | |
| CTTGTAGGTAGCTTGAATTA+TGG | - | chr1.4:65878107-65878126 | MS.gene69933:CDS | 35.0% | |
| GCTTACATTCACTGTAACAA+GGG | + | chr1.4:65878705-65878724 | None:intergenic | 35.0% | |
| GTTACACTTACGATCAAAAG+CGG | + | chr1.4:65878186-65878205 | None:intergenic | 35.0% | |
| TGCTTACATTCACTGTAACA+AGG | + | chr1.4:65878706-65878725 | None:intergenic | 35.0% | |
| TTACATTGAGGAATGACACA+TGG | + | chr1.4:65877945-65877964 | None:intergenic | 35.0% | |
| TTTGTTTGTGAATGCGATTC+TGG | - | chr1.4:65877867-65877886 | MS.gene69933:CDS | 35.0% | |
| ! | TTCTGATGATGTGTCGAATT+TGG | - | chr1.4:65879116-65879135 | MS.gene69933:intron | 35.0% |
| !! | ACTGTGTTGTTGATTTCAAC+GGG | - | chr1.4:65879184-65879203 | MS.gene69933:CDS | 35.0% |
| !! | ATGGGTTCTTTCAAGTTGTT+GGG | - | chr1.4:65877510-65877529 | MS.gene69933:CDS | 35.0% |
| !! | CACTGTGTTGTTGATTTCAA+CGG | - | chr1.4:65879183-65879202 | MS.gene69933:CDS | 35.0% |
| !!! | AGTTTTTTTGTGGTCCAGTT+TGG | + | chr1.4:65878384-65878403 | None:intergenic | 35.0% |
| !!! | GATTTTGTTGATGATGTCCT+TGG | - | chr1.4:65877582-65877601 | MS.gene69933:CDS | 35.0% |
| TATTGGGCATATTGTGGAGA+AGG | - | chr1.4:65878598-65878617 | MS.gene69933:CDS | 40.0% | |
| TCAAAAGCGGAAATATTGCG+AGG | + | chr1.4:65878173-65878192 | None:intergenic | 40.0% | |
| TCAACAACACAGTGATCCAA+TGG | + | chr1.4:65879177-65879196 | None:intergenic | 40.0% | |
| TCTCATGTTACTACTTCCCA+TGG | - | chr1.4:65877548-65877567 | MS.gene69933:CDS | 40.0% | |
| TTTCAACGGGTATGGTTATG+TGG | - | chr1.4:65879197-65879216 | MS.gene69933:CDS | 40.0% | |
| TTTGTGAAGAAGTGGAGTGT+GGG | - | chr1.4:65877805-65877824 | MS.gene69933:intron | 40.0% | |
| ! | GTCCAGTTTGGTTCAGTTTA+TGG | + | chr1.4:65878372-65878391 | None:intergenic | 40.0% |
| ! | GTGTGTATGTGTCTTGTTCT+TGG | + | chr1.4:65878632-65878651 | None:intergenic | 40.0% |
| !! | GTTGTTGATTTCAACGGGTA+TGG | - | chr1.4:65879189-65879208 | MS.gene69933:CDS | 40.0% |
| !! | TTGTTACCAACGGACTAATG+AGG | - | chr1.4:65878991-65879010 | MS.gene69933:intron | 40.0% |
| ACCATGACTCTCAACATCTC+CGG | + | chr1.4:65878890-65878909 | None:intergenic | 45.0% | |
| AGCTAGCTAGGATGCTTAGA+TGG | - | chr1.4:65879220-65879239 | MS.gene69933:CDS | 45.0% | |
| ATGGTTATGTGGAGCTAGCT+AGG | - | chr1.4:65879208-65879227 | MS.gene69933:CDS | 45.0% | |
| CTTGAACCTCATTAGTCCGT+TGG | + | chr1.4:65879000-65879019 | None:intergenic | 45.0% | |
| GGATCTGATTGTTCCAGACT+TGG | - | chr1.4:65878844-65878863 | MS.gene69933:CDS | 45.0% | |
| GTTTGTGAAGAAGTGGAGTG+TGG | - | chr1.4:65877804-65877823 | MS.gene69933:intron | 45.0% | |
| TTGCGAGGTAAAGTCTTCTC+TGG | + | chr1.4:65878158-65878177 | None:intergenic | 45.0% | |
| TTTGTGAATGCGATTCTGGC+TGG | - | chr1.4:65877871-65877890 | MS.gene69933:CDS | 45.0% | |
| ! | ACTAGGGGTGTGCAAAAATG+TGG | - | chr1.4:65878331-65878350 | MS.gene69933:intron | 45.0% |
| ! | CAAGCTCAATCTTTGGAGGA+AGG | - | chr1.4:65879149-65879168 | MS.gene69933:intron | 45.0% |
| ! | CTCCAAAGATTGAGCTTGCT+GGG | + | chr1.4:65879147-65879166 | None:intergenic | 45.0% |
| ! | GTTGTTGGGTCTTATAGCCA+TGG | - | chr1.4:65877524-65877543 | MS.gene69933:CDS | 45.0% |
| ! | TCTTTGGAGGAAGGTTCCAT+TGG | - | chr1.4:65879158-65879177 | MS.gene69933:intron | 45.0% |
| !! | AAAGTCTTCTCTGGAACTGG+AGG | + | chr1.4:65878149-65878168 | None:intergenic | 45.0% |
| !! | GCTTGCTATTGGGCATATTG+TGG | - | chr1.4:65878592-65878611 | MS.gene69933:CDS | 45.0% |
| !! | GGTAAAGTCTTCTCTGGAAC+TGG | + | chr1.4:65878152-65878171 | None:intergenic | 45.0% |
| !! | TCCAAAGATTGAGCTTGCTG+GGG | + | chr1.4:65879146-65879165 | None:intergenic | 45.0% |
| !! | AAATAAATATATAAGAATTA+AGG | - | chr1.4:65878012-65878031 | MS.gene69933:intron | 5.0% |
| AAAATCCCCTTTGGCAGCCA+TGG | + | chr1.4:65877568-65877587 | None:intergenic | 50.0% | |
| AAATCCCCTTTGGCAGCCAT+GGG | + | chr1.4:65877567-65877586 | None:intergenic | 50.0% | |
| ACCGGAGATGTTGAGAGTCA+TGG | - | chr1.4:65878886-65878905 | MS.gene69933:CDS | 50.0% | |
| CCAGCAAGCTCAATCTTTGG+AGG | - | chr1.4:65879145-65879164 | MS.gene69933:intron | 50.0% | |
| CCTCCAAAGATTGAGCTTGC+TGG | + | chr1.4:65879148-65879167 | None:intergenic | 50.0% | |
| GAAGAAGTGGAGTGTGGGAA+AGG | - | chr1.4:65877810-65877829 | MS.gene69933:intron | 50.0% | |
| GTGTGGGAAAGGAAACTGTG+TGG | - | chr1.4:65877821-65877840 | MS.gene69933:intron | 50.0% | |
| TACTTCCCATGGCTGCCAAA+GGG | - | chr1.4:65877559-65877578 | MS.gene69933:CDS | 50.0% | |
| TCCCCAGCAAGCTCAATCTT+TGG | - | chr1.4:65879142-65879161 | MS.gene69933:intron | 50.0% | |
| ACTTCCCATGGCTGCCAAAG+GGG | - | chr1.4:65877560-65877579 | MS.gene69933:CDS | 55.0% | |
| CTACTTCCCATGGCTGCCAA+AGG | - | chr1.4:65877558-65877577 | MS.gene69933:CDS | 55.0% | |
| !! | GTCTTCTCTGGAACTGGAGG+AGG | + | chr1.4:65878146-65878165 | None:intergenic | 55.0% |
| ! | TCTGGAACTGGAGGAGGTGC+TGG | + | chr1.4:65878140-65878159 | None:intergenic | 60.0% |
| !! | GAACTGGAGGAGGTGCTGGT+TGG | + | chr1.4:65878136-65878155 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 65877510 | 65879260 | 65877510 | ID=MS.gene69933 |
| chr1.4 | mRNA | 65877510 | 65879260 | 65877510 | ID=MS.gene69933.t1;Parent=MS.gene69933 |
| chr1.4 | exon | 65879167 | 65879260 | 65879167 | ID=MS.gene69933.t1.exon1;Parent=MS.gene69933.t1 |
| chr1.4 | CDS | 65879167 | 65879260 | 65879167 | ID=cds.MS.gene69933.t1;Parent=MS.gene69933.t1 |
| chr1.4 | exon | 65878810 | 65878971 | 65878810 | ID=MS.gene69933.t1.exon2;Parent=MS.gene69933.t1 |
| chr1.4 | CDS | 65878810 | 65878971 | 65878810 | ID=cds.MS.gene69933.t1;Parent=MS.gene69933.t1 |
| chr1.4 | exon | 65878576 | 65878656 | 65878576 | ID=MS.gene69933.t1.exon3;Parent=MS.gene69933.t1 |
| chr1.4 | CDS | 65878576 | 65878656 | 65878576 | ID=cds.MS.gene69933.t1;Parent=MS.gene69933.t1 |
| chr1.4 | exon | 65878052 | 65878177 | 65878052 | ID=MS.gene69933.t1.exon4;Parent=MS.gene69933.t1 |
| chr1.4 | CDS | 65878052 | 65878177 | 65878052 | ID=cds.MS.gene69933.t1;Parent=MS.gene69933.t1 |
| chr1.4 | exon | 65877863 | 65877934 | 65877863 | ID=MS.gene69933.t1.exon5;Parent=MS.gene69933.t1 |
| chr1.4 | CDS | 65877863 | 65877934 | 65877863 | ID=cds.MS.gene69933.t1;Parent=MS.gene69933.t1 |
| chr1.4 | exon | 65877510 | 65877670 | 65877510 | ID=MS.gene69933.t1.exon6;Parent=MS.gene69933.t1 |
| chr1.4 | CDS | 65877510 | 65877670 | 65877510 | ID=cds.MS.gene69933.t1;Parent=MS.gene69933.t1 |
| Gene Sequence |
| Protein sequence |
