AlfalfaGEDB | MS.gene024151

M. sativa cultivar XinJiangDaYe / MS.gene024151

KEGG: K07874
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00071.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024151.t1	XP_003624319.1	99.5	202	1	0	1	202	1	202	2.30E-109	404.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024151.t1	P28188	91.6	203	16	1	1	202	1	203	1.2e-103	377.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024151.t1	G7KU87	99.5	202	1	0	1	202	1	202	1.7e-109	404.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene001096	MS.gene024151	PPI
MS.gene004991	MS.gene024151	PPI
MS.gene006087	MS.gene024151	PPI
MS.gene011573	MS.gene024151	PPI
MS.gene021166	MS.gene024151	PPI
MS.gene024151	MS.gene61282	PPI
MS.gene024151	MS.gene24932	PPI
MS.gene024151	MS.gene22375	PPI
MS.gene024151	MS.gene64882	PPI
MS.gene024151	MS.gene41117	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024151.t1	MTR_7g081700	99.505	202	1	0	1	202	1	202	5.44e-152	419
MS.gene024151.t1	MTR_8g006970	93.939	198	11	1	6	202	20	217	1.08e-138	386
MS.gene024151.t1	MTR_8g006970	94.186	172	10	0	1	172	1	172	1.21e-119	337
MS.gene024151.t1	MTR_2g005500	77.273	198	44	1	4	200	5	202	3.92e-114	323
MS.gene024151.t1	MTR_4g099470	86.705	173	23	0	30	202	6	178	1.44e-113	321
MS.gene024151.t1	MTR_1g115325	60.488	205	72	3	4	200	11	214	7.00e-87	255
MS.gene024151.t1	MTR_1g068740	61.058	208	70	4	4	202	11	216	1.24e-86	254
MS.gene024151.t1	MTR_1g068730	60.577	208	71	4	4	202	11	216	5.24e-86	253
MS.gene024151.t1	MTR_7g100020	61.058	208	70	4	4	202	11	216	6.81e-86	253
MS.gene024151.t1	MTR_4g063160	59.903	207	71	5	4	200	11	215	1.22e-82	244

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024151.t1	AT1G02130	91.626	203	16	1	1	202	1	203	2.92e-141	392
MS.gene024151.t1	AT4G17530	87.129	202	26	0	1	202	1	202	4.03e-136	379
MS.gene024151.t1	AT5G47200	87.129	202	26	0	1	202	1	202	4.26e-135	377
MS.gene024151.t1	AT3G11730	75.369	203	47	2	1	200	1	203	5.36e-112	318
MS.gene024151.t1	AT5G59840	61.836	207	70	4	4	202	11	216	1.02e-87	257
MS.gene024151.t1	AT3G46060	60.870	207	72	4	4	202	11	216	2.82e-86	254
MS.gene024151.t1	AT3G46060	60.870	207	72	4	4	202	11	216	2.82e-86	254
MS.gene024151.t1	AT3G46060	60.870	207	72	4	4	202	11	216	2.82e-86	254
MS.gene024151.t1	AT3G53610	59.903	207	74	3	4	202	11	216	4.66e-86	253
MS.gene024151.t1	AT3G53610	59.903	207	74	3	4	202	11	216	4.66e-86	253

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Find 42 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTCGAACAGGCATTTA+TGG	0.216366	7.1:-22838226	MS.gene024151:CDS
AAGTGAGGAACATACTATTC+AGG	0.384451	7.1:+22840670	None:intergenic
AATGTTAACAAGCTCTTGGT+TGG	0.494106	7.1:-22838516	MS.gene024151:CDS
ACATACGATTTGGAGCTTAA+TGG	0.308951	7.1:+22838982	None:intergenic
ACTTACAAAATCAACTCCAA+TGG	0.612564	7.1:+22839113	None:intergenic
AGCCAGTTGGCCAGAAAAGT+GGG	0.560192	7.1:-22837349	MS.gene024151:CDS
AGCTACTACCGTGGGGCACA+TGG	0.500719	7.1:-22838721	MS.gene024151:CDS
ATATGAGTACCTATCCTTGA+TGG	0.396903	7.1:+22838191	None:intergenic
ATATGTAGTGGGATACAGCT+GGG	0.616758	7.1:-22838771	MS.gene024151:intron
ATCACCAGTAGCTACTACCG+TGG	0.643184	7.1:-22838730	MS.gene024151:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATACCATGTAGTTTGGT+TGG	-	chr7.1:22840118-22840137	MS.gene024151:intron	30.0%
AAAGGCTTCTAATTGTTACT+TGG	+	chr7.1:22838118-22838137	None:intergenic	30.0%
AAATACCATGTAGTTTGGTT+GGG	-	chr7.1:22840119-22840138	MS.gene024151:intron	30.0%
AAATGAACGGATGTAGTAAT+TGG	-	chr7.1:22838399-22838418	MS.gene024151:intron	30.0%
AAATGACTCTAAGCTAAAGA+AGG	+	chr7.1:22839964-22839983	None:intergenic	30.0%
AAGTAACAATTAGAAGCCTT+TGG	-	chr7.1:22838117-22838136	MS.gene024151:intron	30.0%
ACCCTACAACAATAACTAAA+AGG	+	chr7.1:22838179-22838198	None:intergenic	30.0%
ACTTACAAAATCAACTCCAA+TGG	+	chr7.1:22838900-22838919	None:intergenic	30.0%
AGTAACAATTAGAAGCCTTT+GGG	-	chr7.1:22838118-22838137	MS.gene024151:intron	30.0%
ATAAAATGACAGTCCTTTCA+AGG	+	chr7.1:22840405-22840424	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	22837334	22840698	22837334	ID=MS.gene024151
chr7.1	mRNA	22837334	22840698	22837334	ID=MS.gene024151.t1;Parent=MS.gene024151
chr7.1	exon	22840685	22840698	22840685	ID=MS.gene024151.t1.exon1;Parent=MS.gene024151.t1
chr7.1	CDS	22840685	22840698	22840685	ID=cds.MS.gene024151.t1;Parent=MS.gene024151.t1
chr7.1	exon	22840063	22840135	22840063	ID=MS.gene024151.t1.exon2;Parent=MS.gene024151.t1
chr7.1	CDS	22840063	22840135	22840063	ID=cds.MS.gene024151.t1;Parent=MS.gene024151.t1
chr7.1	exon	22839119	22839166	22839119	ID=MS.gene024151.t1.exon3;Parent=MS.gene024151.t1
chr7.1	CDS	22839119	22839166	22839119	ID=cds.MS.gene024151.t1;Parent=MS.gene024151.t1
chr7.1	exon	22838988	22839035	22838988	ID=MS.gene024151.t1.exon4;Parent=MS.gene024151.t1
chr7.1	CDS	22838988	22839035	22838988	ID=cds.MS.gene024151.t1;Parent=MS.gene024151.t1
chr7.1	exon	22838714	22838785	22838714	ID=MS.gene024151.t1.exon5;Parent=MS.gene024151.t1
chr7.1	CDS	22838714	22838785	22838714	ID=cds.MS.gene024151.t1;Parent=MS.gene024151.t1
chr7.1	exon	22838464	22838619	22838464	ID=MS.gene024151.t1.exon6;Parent=MS.gene024151.t1
chr7.1	CDS	22838464	22838619	22838464	ID=cds.MS.gene024151.t1;Parent=MS.gene024151.t1
chr7.1	exon	22838201	22838304	22838201	ID=MS.gene024151.t1.exon7;Parent=MS.gene024151.t1
chr7.1	CDS	22838201	22838304	22838201	ID=cds.MS.gene024151.t1;Parent=MS.gene024151.t1
chr7.1	exon	22837334	22837427	22837334	ID=MS.gene024151.t1.exon8;Parent=MS.gene024151.t1
chr7.1	CDS	22837334	22837427	22837334	ID=cds.MS.gene024151.t1;Parent=MS.gene024151.t1

Gene Sequence

>MS.gene024151

ATGAATCCTGAATAGTATGTTCCTCACTTTCTATTCCTTCTCGATTTTCCTTGATTCGTTTTTTATTTTCTGAAATTTCGTTCCTTTTTCGTGTTTTTCATGTTTTCTCTTAAAAGGGTTGGTGTTAATTTGGTTTATATAAGCTGGGTTATGTTAATTTCAATTTTTGTTGTTTTCTAACCCTAAATTGTTTTTTTTCTTCCTGAAATTTTAACCCTAGATTGAATTATATATGTTAATCAGGATTCAACTGTGATCCTTGTGTTTTTGAGTTTTCATGATTGATTTTATAGTTTTAGAATTACATGGAATCTGATCTTGTTAGTGATCCCTTGTTGATTTATAAGAGATGTTTGAGTTTGTAATTCAATCAATAAGATAAAATTTTGATGCTTGTGTTGCTTTTGTTTATAGATCTTTGAAAAAAAAATTAAGACTTTACAATTGGGTTTTTTATTTGTTTTCATGTTGATATATGTGGAGATATGGTTAATTTAGATGCTGATTCACAATCTATTTTTGTTGAAGTGATAGAGCTGATGTGTTATGGTTATTGTTTTCAGTGATTATCTGTTTAAGCTTCTTTTGATTGGAGACTCTGGTGTTGGAAAATCATGCCTTCTGCTCAGATTTGCTGTAAGCTTTCTGCTGCTTTTTCTGCTTGTTGTTTATTATGTTGGATACTCTTGTTTGGTTTTATAACCGATACTATAGTTTAATGTTGTATGGTTTTCATTTTCGGTTTACCTTATTTCCACTTGAGTTAATTGTTTTATCGCTCCCAAGTAACAATTAGAAGCCTTTGGGTGTGTTGCACTGGTTAAAGATGTGCTCCATCCGTTCCTTTTAGTTATTGTTGTAGGGTTATTTACACATACTAACAAACTAATAAATTTTGTTACTTTTCATATGTTTTGTTAGTAATACCCTAAACTATTTATTATCTCATTCCACATGGTATTTCTCTCTCTCTCCCCCCAAGACAAAACAATAATTAATGTTGTATTGGACTTTGAAAACAACAAGTTAATAGGAACAACAAATTTCTACAAATGTGACTAGTAAAAATGAACGGATGTAGTAATTGGTAACTGTAACATATTCAATTATTTATAAACAATGGCTACCTGTTTAATTCTTTGTTGGAGGTTTTTGTGTAGTTCTGGAAATAAATCAATAGTTGTGCTTGGAACTTTATGAGGTTGGGGGGAGATAAAACCTTTCGGGATATTGTTGAAAGTGATGAGGTTCTGTCTCCTGTTGTGAGCTTTACTTTGAACTAGAAAATGGCCTTATGGAGAATGTCTGATTAAAAAAATTATAGCATGTTAATTTTCTTAATTATTATTATTATTTTTTTAAAAAGAAGTATGTGTTTTGGCTGGTGTCATAAAATGTTTTTGCTATGATGATAGTTACCAACCTAAAAAAGGTAAAATGGCTTCACTTTGTATGTTGGTTGATCTTGGTTCGTGGAGATGATATGTGGCTTAATTTAGTGATTTGTATTAACGTTAAGTTTTATGCTACAGGATGATTCTTACATTGACAGCTACATAAGCACCATTGGAGTTGATTTTGTAAGTACAACTTTGCAAAGATCTATCTTGTACTGAGTTAAAGCAATTTCTGATATCTCATCGTGTTGTGTTATTTTATGTAGAAAATCCGCACAGTTGAACAGGATGGGAAGACCATTAAGCTCCAAATCGTATGTATATGATTGTCTTTGTTTTAGTTTCTTTGTCTATTGATATTAAATCATCAGTGAACTTGACATAACTTTTTTTTTAATCTTGTTGGAGATATTTTTCTATAAAATGTTTTTTGATAATCACTTCATTTTAATGAATAAGTTTCTGTACCACGTTGACATTGTTTCTTATCGTGTTGTGATCCAATTTCATATGTAGTGGGATACAGCTGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTACCGTGGGGCACATGGAATCATTGTGCGTAATGATGGTTTTGCATAAGTTTAAAATTTATATTTCCTGACTTTGTTGGTCTTTCCTTGCATGCTTTACTAACTGGTTATTCTGGCAGATTGTCTATGATGTGACAGATGAAGAGAGCTTCAATAATGTGAAGCAATGGCTCAGTGAAATTGACCGCTATGCTAGTGATAATGTTAACAAGCTCTTGGTTGGCAACAAGTGCGATCTGACATCAGAGAGAGCTGTGTCATATGAAACAGCTAAAGTATAACTTTGTTTTACACCCCTTGCATTTTTATTTTTATTTTTCATACTAAAGAAACATTCCATTTCAAGCTTGTGCTTGCATAGTGCTGTTGAGGCGTTACTACTCTTATGTTCCTATTTCAGCTATCCTTATCTATATTATGTTTTTCTTTAACAGGCATTTGCAGATGAAATAGGCATACCTTTTATGGAGACAAGTGCAAAGGATTCTACAAATGTCGAACAGGCATTTATGGCAATGGCTTCTTCCATCAAGGATAGGTACTCATATATTTTTTTTTTATAATTTAAATGTAGATGAACAGTTAAATATGCTTGGCCTTCTAAGCAAGTTAGAGCAAAAATAAGTTTACAACTCAAAAGAAGGATTACGATGAAAGCCCATTCCAACCTTCTTTAGCTTAGAGTCATTTTTATGCCTTTTAGTTTTCCTTGGCTGGGATAAGTCAATTTTGAGGACTTTGTATTGTATCCCATCCAATCAAATCTAGACCATGCTTAATATGAATGACTTAGAGCCATACAGAGGATACCTAAGTGAGGCAAAAAAATACCATGTAGTTTGGTTGGGTATGTACCCCTCGTCCAATCAATCAATGTCGTGTCATTTCTTCGTGTTAGTTTATTTTAGAATAAATTCAAATGTTAAACAAATTTTACCTAGAAGGTACTGATACCCAACCAAACTCCATGGTACCTAAGAATTTACCGAAAATCATAGTCACATGGCCACCGACCGAGGAAATCATTTTGGAAACCAAAATTCCAAAATCTCATTGCCCATTCTTTCTTGATCTGCTGCACAGCTCGCAACCAGCAGGGTAATCATCACCTTGAAAGGACTGTCATTTTATTTTAATTACTTTAATTAAAAGACTTGGTTTTAGGCTTAGATATACATTTGGCTCGTCCTGATGTTCAATGAAAAGTTGTTTACTTTAAAAGGACTCTCGTGTTATCACTAACTTCTTTTCGTTGCTGGCATTGATTCCCTCTAAGATCAAATTCTGATGATAATTTTTTCTTGAATGTAGAATGGCTAGCCAACCTACAAACAATGCAAGGCCTCCAACAGTGCAGATAAGGGGACAGCCAGTTGGCCAGAAAAGTGGGTGCTGCTCATCTTAA

Protein sequence

>MS.gene024151.t1

MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDLTSERAVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMASSIKDRMASQPTNNARPPTVQIRGQPVGQKSGCCSS