AlfalfaGEDB | MS.gene55072

M. sativa cultivar XinJiangDaYe / MS.gene55072

KEGG: K07874
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00071.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55072.t1	XP_003624319.1	99.5	202	1	0	1	202	1	202	2.30E-109	404.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55072.t1	P28188	91.6	203	16	1	1	202	1	203	1.2e-103	377.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55072.t1	G7KU87	99.5	202	1	0	1	202	1	202	1.7e-109	404.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene001096	MS.gene55072	PPI
MS.gene006087	MS.gene55072	PPI
MS.gene011573	MS.gene55072	PPI
MS.gene026674	MS.gene55072	PPI
MS.gene028471	MS.gene55072	PPI
MS.gene030951	MS.gene55072	PPI
MS.gene045532	MS.gene55072	PPI
MS.gene046987	MS.gene55072	PPI
MS.gene058974	MS.gene55072	PPI
MS.gene074185	MS.gene55072	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55072.t1	MTR_7g081700	99.505	202	1	0	1	202	1	202	5.44e-152	419
MS.gene55072.t1	MTR_8g006970	93.939	198	11	1	6	202	20	217	1.08e-138	386
MS.gene55072.t1	MTR_8g006970	94.186	172	10	0	1	172	1	172	1.21e-119	337
MS.gene55072.t1	MTR_2g005500	77.273	198	44	1	4	200	5	202	3.92e-114	323
MS.gene55072.t1	MTR_4g099470	86.705	173	23	0	30	202	6	178	1.44e-113	321
MS.gene55072.t1	MTR_1g115325	60.488	205	72	3	4	200	11	214	7.00e-87	255
MS.gene55072.t1	MTR_1g068740	61.058	208	70	4	4	202	11	216	1.24e-86	254
MS.gene55072.t1	MTR_1g068730	60.577	208	71	4	4	202	11	216	5.24e-86	253
MS.gene55072.t1	MTR_7g100020	61.058	208	70	4	4	202	11	216	6.81e-86	253
MS.gene55072.t1	MTR_4g063160	59.903	207	71	5	4	200	11	215	1.22e-82	244

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55072.t1	AT1G02130	91.626	203	16	1	1	202	1	203	2.92e-141	392
MS.gene55072.t1	AT4G17530	87.129	202	26	0	1	202	1	202	4.03e-136	379
MS.gene55072.t1	AT5G47200	87.129	202	26	0	1	202	1	202	4.26e-135	377
MS.gene55072.t1	AT3G11730	75.369	203	47	2	1	200	1	203	5.36e-112	318
MS.gene55072.t1	AT5G59840	61.836	207	70	4	4	202	11	216	1.02e-87	257
MS.gene55072.t1	AT3G46060	60.870	207	72	4	4	202	11	216	2.82e-86	254
MS.gene55072.t1	AT3G46060	60.870	207	72	4	4	202	11	216	2.82e-86	254
MS.gene55072.t1	AT3G46060	60.870	207	72	4	4	202	11	216	2.82e-86	254
MS.gene55072.t1	AT3G53610	59.903	207	74	3	4	202	11	216	4.66e-86	253
MS.gene55072.t1	AT3G53610	59.903	207	74	3	4	202	11	216	4.66e-86	253

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Find 42 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTCGAACAGGCATTTA+TGG	0.216366	7.2:-25118258	MS.gene55072:CDS
AAGTGAGGAACATACTATTC+AGG	0.384451	7.2:+25120700	None:intergenic
AATGTTAACAAGCTCTTGGT+TGG	0.494106	7.2:-25118549	MS.gene55072:CDS
ACATACGATTTGGAGCTTAA+TGG	0.308951	7.2:+25119017	None:intergenic
ACTTACAAAATCAACTCCAA+TGG	0.612564	7.2:+25119148	None:intergenic
AGCCAGTTGGCCAGAAAAGT+GGG	0.560192	7.2:-25117383	MS.gene55072:CDS
AGCTACTACCGTGGGGCACA+TGG	0.500719	7.2:-25118754	MS.gene55072:CDS
ATATGAGTACCTATCCTTGA+TGG	0.381024	7.2:+25118223	None:intergenic
ATATGTAGTGGGATACAGCT+GGG	0.616758	7.2:-25118804	MS.gene55072:intron
ATCACCAGTAGCTACTACCG+TGG	0.643184	7.2:-25118763	MS.gene55072:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATACCATGTAGTTTGGT+TGG	-	chr7.2:25120148-25120167	MS.gene55072:CDS	30.0%
AAATACCATGTAGTTTGGTT+GGG	-	chr7.2:25120149-25120168	MS.gene55072:CDS	30.0%
AAATGAACGGATGTAGTAAT+TGG	-	chr7.2:25118428-25118447	MS.gene55072:intron	30.0%
AAATGACTCTAAGCTAAAGA+AGG	+	chr7.2:25119994-25120013	None:intergenic	30.0%
ACCCTACAACAATAACTAAA+AGG	+	chr7.2:25118208-25118227	None:intergenic	30.0%
ACTTACAAAATCAACTCCAA+TGG	+	chr7.2:25118929-25118948	None:intergenic	30.0%
ATAAAATGACAGTCCTTTCA+AGG	+	chr7.2:25120435-25120454	None:intergenic	30.0%
CATCAGAATTTGATCTTAGA+GGG	+	chr7.2:25120594-25120613	None:intergenic	30.0%
CATGAAAACTCAAAAACACA+AGG	+	chr7.2:25117627-25117646	None:intergenic	30.0%
CTACCTGTTTAATTCTTTGT+TGG	-	chr7.2:25118486-25118505	MS.gene55072:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	25117368	25120728	25117368	ID=MS.gene55072
chr7.2	mRNA	25117368	25120728	25117368	ID=MS.gene55072.t1;Parent=MS.gene55072
chr7.2	exon	25120715	25120728	25120715	ID=MS.gene55072.t1.exon1;Parent=MS.gene55072.t1
chr7.2	CDS	25120715	25120728	25120715	ID=cds.MS.gene55072.t1;Parent=MS.gene55072.t1
chr7.2	exon	25120098	25120170	25120098	ID=MS.gene55072.t1.exon2;Parent=MS.gene55072.t1
chr7.2	CDS	25120098	25120170	25120098	ID=cds.MS.gene55072.t1;Parent=MS.gene55072.t1
chr7.2	exon	25119154	25119201	25119154	ID=MS.gene55072.t1.exon3;Parent=MS.gene55072.t1
chr7.2	CDS	25119154	25119201	25119154	ID=cds.MS.gene55072.t1;Parent=MS.gene55072.t1
chr7.2	exon	25119023	25119070	25119023	ID=MS.gene55072.t1.exon4;Parent=MS.gene55072.t1
chr7.2	CDS	25119023	25119070	25119023	ID=cds.MS.gene55072.t1;Parent=MS.gene55072.t1
chr7.2	exon	25118747	25118818	25118747	ID=MS.gene55072.t1.exon5;Parent=MS.gene55072.t1
chr7.2	CDS	25118747	25118818	25118747	ID=cds.MS.gene55072.t1;Parent=MS.gene55072.t1
chr7.2	exon	25118497	25118652	25118497	ID=MS.gene55072.t1.exon6;Parent=MS.gene55072.t1
chr7.2	CDS	25118497	25118652	25118497	ID=cds.MS.gene55072.t1;Parent=MS.gene55072.t1
chr7.2	exon	25118233	25118336	25118233	ID=MS.gene55072.t1.exon7;Parent=MS.gene55072.t1
chr7.2	CDS	25118233	25118336	25118233	ID=cds.MS.gene55072.t1;Parent=MS.gene55072.t1
chr7.2	exon	25117368	25117461	25117368	ID=MS.gene55072.t1.exon8;Parent=MS.gene55072.t1
chr7.2	CDS	25117368	25117461	25117368	ID=cds.MS.gene55072.t1;Parent=MS.gene55072.t1

Gene Sequence

>MS.gene55072

ATGAATCCTGAATAGTATGTTCCTCACTTTCTATTCCTTCTCGATTTTCCTTGATTCGTTTTTTATTTTCTGAAATTTCGTTCCTTTTACGTTTTTTTTATGTTTTCTCTCAAAAGGGTTGGTGTTAATTTGGTTTATATAAGCTGGGTTATGTTAATTTCAATTTTTGTTGTTTTCTAACCCTAAATTGTTTTTTTTTTCCTGAAATTCTAACCCTAGATTGAATTATATATGTTAATCAGGATTCAACTGTGATCCTTGTGTTTTTGAGTTTTCATGATTGATTTTATAGTTTTAGAATTACCCTGAATCTGATCTTGTTAGTGATCCCTTGTTGATTTATAAGAGATGTTTGAGTTTGTAATTCAATCAATAAGATAAAATTTGATGCTTGTGTTAGCTTTTGTTTATAGATCTTTGAAAAAAAAATTAAGATTTTACAATTGGGTTTTTTGTTTGATTTCATGTTGATATATGTGGATGGTTAATTTAGATGCTGATTCACAATCTATTTTTGTTGAAGTGATAGAGCTGATGTGTTGTGGTTATTGTTTTCAGTGATTATCTGTTTAAGCTTCTTTTGATTGGAGACTCTGGTGTTGGAAAATCATGCCTTCTGCTCAGATTTGCTGTAAGCTTTCTGCTGCTTTTTCTGCTTGTTGTTTATTATGTTGGATACTCTTGTTTGGTTTTATAACCGATACTATAGTTTAATGTTGTATGGTTTTCATTTTCGGTTTACCTTATTTCCACTTGAGTTAATTGTTTTATCGCTCCGAAGCAACAATTAGAAGCCTTTGGGTGTGTTGCACTGGTTAAAGATGTGCTCCATCCGTTCCTTTTAGTTATTGTTGTAGGGTTATTTACACATACTAACAAACTAATAAATTTTGTTACTTTTCATATGTTTTGTTAGTAATACCCTAAACTATTTATTATCTCATTCCACATGGTATTTCTCTCTCTCTCCCCCCAAGACAAAACAATAATTAATGTTGTATTGGACTTTGAAAACAACAAGTTAATAGGAACAACAAATTTCTACAAAAGTGACTAGTAAAAATGAACGGATGTAGTAATTGGTAACTGTAACATATTCAATTATTTATAAACAATGGCTACCTGTTTAATTCTTTGTTGGAGGTTTTTGTGTAGTTCTGGAAATAAATCAATAGTTGTGCTTGGAACTTTATGAGGTTGGGGGGAGATAAAACCTTTCGGGATATTGTTGAAAGTGATGAGGTTCTGTCTCCTGTTTTGAGCTTTACTTTGAACTAGAAAATGGCCTTATGGAGAATGTCTGATTAAAAAAATTATAGCATGTTAATTTTCTTAATTATTATAATTATTTTTTTAAAAAGAAGTATGTGTTTTGGCTGGTGTCATAAAATGTTTTTGTTATGATGATAGTTACCAACCTAAAAAGGGTAAAATGGCTTCACTTTGTATGTTGGTTGATCTTGGTTCATGGAGATGATATGTGGCTTAATTTAGTGATTTGTATTAACGTTAAGTTTTATGCTACAGGATGATTCTTACATTGACAGCTACATAAGCACCATTGGAGTTGATTTTGTAAGTACAACTTTGCAAAGATCTATCTTGCACTGAGTTAAAGCAATTTCTGATATCTCATCGTGTTGTGTTATTTTATGTAGAAAATCCGCACAGTTGAACAGGATGGGAAGACCATTAAGCTCCAAATCGTATGTATATGATTGTCTTTGTTTTAGTTTCTTTGTCAATTGATATTAAATCATCAGTGAACTTGACATAACTTTTTTTTTAATCTTGTTGGAGATATTTTTCTATAAAATGTTTTTTGATAATCACTTCATTTTAATGAATAAGTTTCTGTACCACGTTGACATTGTTTCTTATCGTGTTTTGTGATCCAATTTCATATGTAGTGGGATACAGCTGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTACCGTGGGGCACATGGAATCATTGTGCGTAATGATGGTTTTGCATAAGTTTAAAATTTATATTTCCCGACTTTGTTGGTCTTTCCTTGCATGCTTTACTAATTGGTTATTCTGGCAGATTGTCTATGATGTGACAGATGAAGAGAGCTTCAATAATGTGAAGCAATGGCTCAGTGAAATTGACCGCTATGCTAGTGATAATGTTAACAAGCTCTTGGTTGGCAACAAGTGCGATCTGACATCAGAGAGAGCTGTGTCATATGAAACAGCTAAAGTATAACTTTGTTTTAAACCCCTTGCATTTTTATTTTTTATTTTTCATGCTAAAGAAACATTCAATTTCAAGCTTGTGCTTGCATAGTGCTGTTGAGGCATTACTACTCTTATGTTCCTATTTCAGCTATCCTTATCTATATTATGTTTTTCTTTAACAGGCATTTGCAGATGAAATAGGCATACCTTTTATGGAGACAAGTGCAAAGGATTCTACAAATGTCGAACAGGCATTTATGGCAATGGCTTCTTCCATCAAGGATAGGTACTCATATTTTTTTTTTTATAATTTAAATGTAGATGAACAGTTAAATATGCTTGTCCTTCTAAGCAAGTTAGAGCAAAAATAAGTTTACAACTCAAAAGAAGGATTACGATGAAGCCCATTCCAACCTTCTTTAGCTTAGAGTCATTTTTATGCCTTTTAGTTTTCCTTGGCTGGGATAAGTCAATTTTGAGGACTTTGTATTGTATCCCATCCAATCAAATCTAGACCATGCTTAATATGAATGACTTAGAGCCATACAGAGGATACCTAAGTGAGGCAAAAAAATACCATGTAGTTTGGTTGGGTATGTACCCCTCGTCCAATCAATCAATGTCGTGTCATTTCTTCATGTTAGTTTATTTTAGAATAAATTCAAATGTTAAACAAATTTTACCTTGAAGGTACTGATACCCAACCAAACTCCACGGTACCTAAGAATTTACCGAAAATCATAGTCACATGGCCACCGACCGAGGAAATCATTTTGGAAACCAAAATTCCAAAATCTCGTTGCCCATTCTTTCTTGATCTGCTGCACAGCTCGCAACCAGCAGGGTAATCATTACCTTGAAAGGACTGTCATTTTATTTTAATTACTTTAATTAAAAGACTTGGTTTTAGGCTTAGATATACATTTGGCTCGTCCTGATGTTCAATGAAAAGTTGTTTACTTTAAAAGGACTCTCGTGTTATCACTAACTTCTTTTCGTTGCTGGCATTGATTCCCTCTAAGATCAAATTCTGATGATAGTTTTTTCTTGAATGTAGAATGGCTAGCCAACCTACAAACAATGCAAGGCCTCCAACAGTGCAGATAAGGGGACAGCCAGTTGGCCAGAAAAGTGGGTGCTGCTCATCTTAA

Protein sequence

>MS.gene55072.t1

MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDLTSERAVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMASSIKDRMASQPTNNARPPTVQIRGQPVGQKSGCCSS