AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70370.t1 MTR_4g094235 90.268 298 5 2 1 292 1 280 2.10e-116 336
MS.gene70370.t1 MTR_4g094235 85.284 299 19 3 1 292 1 281 1.44e-114 332
MS.gene70370.t1 MTR_5g070450 70.903 299 48 4 1 292 1 267 1.94e-79 242
MS.gene70370.t1 MTR_4g118630 38.961 77 47 0 17 93 49 125 2.33e-14 72.4
MS.gene70370.t1 MTR_3g083550 41.558 77 45 0 17 93 42 118 1.25e-13 69.7
MS.gene70370.t1 MTR_1g054675 41.558 77 45 0 17 93 44 120 3.08e-13 67.8
MS.gene70370.t1 MTR_5g079870 43.750 80 45 0 13 92 44 123 3.13e-13 68.9
MS.gene70370.t1 MTR_3g025880 43.421 76 43 0 18 93 46 121 4.79e-13 69.3
MS.gene70370.t1 MTR_5g070100 42.105 76 44 0 14 89 34 109 1.68e-12 67.4
MS.gene70370.t1 MTR_6g477870 39.474 76 46 0 18 93 97 172 1.38e-11 62.4
MS.gene70370.t1 MTR_7g106440 40.909 88 52 0 18 105 111 198 5.52e-11 62.8
MS.gene70370.t1 MTR_5g023060 38.961 77 47 0 17 93 132 208 5.88e-11 62.4
MS.gene70370.t1 MTR_4g081520 35.065 77 50 0 17 93 52 128 6.68e-11 59.7
MS.gene70370.t1 MTR_4g109540 37.975 79 49 0 15 93 41 119 7.43e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70370.t1 AT5G64200 61.484 283 70 8 1 255 1 272 1.63e-76 236
MS.gene70370.t1 AT5G64200 61.484 283 70 8 1 255 1 272 1.63e-76 236
MS.gene70370.t1 AT5G18810 39.474 76 46 0 18 93 49 124 1.72e-15 74.7
MS.gene70370.t1 AT5G18810 39.474 76 46 0 18 93 49 124 1.74e-15 74.7
MS.gene70370.t1 AT1G55310 41.558 77 45 0 17 93 37 113 4.27e-14 70.5
MS.gene70370.t1 AT1G55310 41.558 77 45 0 17 93 37 113 4.27e-14 70.5
MS.gene70370.t1 AT3G13570 32.353 238 127 7 17 234 38 261 8.66e-13 67.4
MS.gene70370.t1 AT3G10400 37.778 90 56 0 17 106 58 147 1.96e-12 66.2
MS.gene70370.t1 AT3G47120 41.667 72 42 0 18 89 38 109 3.34e-12 66.6
MS.gene70370.t1 AT3G47120 41.667 72 42 0 18 89 38 109 4.37e-12 65.9
MS.gene70370.t1 AT5G03580 39.189 74 44 1 17 90 18 90 6.48e-12 61.6
MS.gene70370.t1 AT5G06210 40.789 76 45 0 18 93 36 111 1.41e-11 61.6
MS.gene70370.t1 AT5G54580 35.065 77 50 0 17 93 57 133 2.94e-11 61.2
MS.gene70370.t1 AT1G73530 38.158 76 47 0 18 93 79 154 4.67e-11 61.2

Find 107 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCGTTGTTTGATAAGTA+TGG 0.248443 4.3:-20275941 MS.gene70370:CDS
TTTGGAGATGGGCTCCTCTT+TGG 0.256933 4.3:+20274016 None:intergenic
TTTGAATACCTTCGATCTTT+GGG 0.287302 4.3:+20275896 None:intergenic
ACTTACATCCTCTCAGCATT+AGG 0.296368 4.3:+20275575 None:intergenic
TTTGGAGAAGGGCTCCTCTT+TGG 0.312922 4.3:+20273980 None:intergenic
TTTGGAGAAGGGCTCCTCTT+TGG 0.312922 4.3:+20273998 None:intergenic
ACTTATCAAACAACGGAAAT+AGG 0.314806 4.3:+20275945 None:intergenic
ACTGTCCAGTTTGCAAAATA+TGG 0.319049 4.3:-20275599 MS.gene70370:CDS
TCCTTGAGCTCTTTGATCTC+GGG 0.321129 4.3:+20275147 None:intergenic
CTCCTTGAGCTCTTTGATCT+CGG 0.321782 4.3:+20275146 None:intergenic
TTCAGAGAAGGGCTCCTCTT+TGG 0.328760 4.3:+20273962 None:intergenic
ACAGACACCGTGGGAGAGAT+AGG 0.351088 4.3:-20274306 MS.gene70370:CDS
GTGCATTCACCTTCTCTTGC+TGG 0.356356 4.3:+20275115 None:intergenic
GGTTACAAGGGCCGTGGAAG+GGG 0.372918 4.3:-20274244 MS.gene70370:CDS
TTTGGAGATGGGCTCCTCCT+TGG 0.382161 4.3:+20274034 None:intergenic
ACTACAAAGAAAAGGATTAC+AGG 0.405827 4.3:-20274369 MS.gene70370:CDS
GACGCAGTTCTATTCCTAAA+AGG 0.418222 4.3:-20274066 MS.gene70370:CDS
CTTACATCCTCTCAGCATTA+GGG 0.418601 4.3:+20275576 None:intergenic
GATGGGCTCCTCTTTGGAGA+TGG 0.418712 4.3:+20274022 None:intergenic
GAAGGGCTCCTCTTTGGAGA+TGG 0.419034 4.3:+20274004 None:intergenic
GGAATAGAACTGCGTCGCAC+TGG 0.428015 4.3:+20274073 None:intergenic
GATGGGCTCCTCCTTGGAGA+AGG 0.432845 4.3:+20274040 None:intergenic
GAGTAGGTATCGGAGATGTC+TGG 0.437496 4.3:+20276096 None:intergenic
ACCTGTCCACTGATCTGCTT+CGG 0.440722 4.3:+20274191 None:intergenic
CCCTCTCCTCGAAATTCAAA+TGG 0.450770 4.3:-20273818 MS.gene70370:CDS
TGGTTACAAGGGCCGTGGAA+GGG 0.452023 4.3:-20274245 MS.gene70370:CDS
ATGGGCTCCTCTTTGGAGAT+GGG 0.454316 4.3:+20274023 None:intergenic
CCATTTGAATTTCGAGGAGA+GGG 0.467296 4.3:+20273818 None:intergenic
ACATCACCATTTGAATTTCG+AGG 0.468064 4.3:+20273812 None:intergenic
AAGGGCTCCTCTTTGGAGAT+GGG 0.469599 4.3:+20274005 None:intergenic
ATGTCTCACTTCGGTAGGTC+AGG 0.470526 4.3:-20276123 MS.gene70370:CDS
AAGCTTCCAAGGCTGTTGAT+AGG 0.471644 4.3:-20275742 MS.gene70370:CDS
TGCATTCACCTTCTCTTGCT+GGG 0.474920 4.3:+20275116 None:intergenic
CCACCACGGCTACGACCATC+AGG 0.476201 4.3:+20273881 None:intergenic
CTGGTTACAAGGGCCGTGGA+AGG 0.484019 4.3:-20274246 MS.gene70370:CDS
GAATAGAACTGCGTCGCACT+GGG 0.488305 4.3:+20274074 None:intergenic
CTTCCACGGCCCTTGTAACC+AGG 0.492291 4.3:+20274247 None:intergenic
TAGTGCTAGTCCTGGTTACA+AGG 0.492924 4.3:-20274257 MS.gene70370:CDS
GTTACAAGGGCCGTGGAAGG+GGG 0.499632 4.3:-20274243 MS.gene70370:CDS
GGCTTCTGCTTCGGCGACGA+TGG 0.500908 4.3:+20274281 None:intergenic
GTCGAGCCTATCAACAGCCT+TGG 0.507162 4.3:+20275736 None:intergenic
CGGAAATAGGTCATCGGCGG+TGG 0.508213 4.3:+20275958 None:intergenic
GTCGCAGCAGGAGTTATGAT+AGG 0.511200 4.3:-20274339 MS.gene70370:CDS
ATGGGCTCCTCCTTGGAGAA+GGG 0.511692 4.3:+20274041 None:intergenic
TCGTGATGACTACAAAGAAA+AGG 0.517915 4.3:-20274377 MS.gene70370:CDS
TAGCACTACGGCTTCTGCTT+CGG 0.518667 4.3:+20274272 None:intergenic
AACTGCGTCGCACTGGGGAG+CGG 0.520493 4.3:+20274080 None:intergenic
GAAGGGCTCCTCTTTGGAGA+AGG 0.523124 4.3:+20273986 None:intergenic
GCCGAAGCAGATCAGTGGAC+AGG 0.523668 4.3:-20274192 MS.gene70370:intron
GAAGGGCTCCTCTTTGGAGA+AGG 0.530560 4.3:+20273968 None:intergenic
ACAGGAGGAGAAGTCGCAGC+AGG 0.531528 4.3:-20274351 MS.gene70370:CDS
TTATTTACAGTCAGAAAGGA+AGG 0.534511 4.3:-20275184 MS.gene70370:intron
GTTGAGAACAAGGAGAGAGT+AGG 0.544195 4.3:+20276080 None:intergenic
GCCGCAGTCCCAGCAAGAGA+AGG 0.547662 4.3:-20275124 MS.gene70370:intron
CCTTGAGCTCTTTGATCTCG+GGG 0.548590 4.3:+20275148 None:intergenic
TACGACCATCAGGACTTTCA+CGG 0.550712 4.3:+20273891 None:intergenic
AGTCCTGGTTACAAGGGCCG+TGG 0.550812 4.3:-20274250 MS.gene70370:CDS
ATATGCTGATGAAGCTTCCA+AGG 0.553657 4.3:-20275753 MS.gene70370:CDS
TTGAATACCTTCGATCTTTG+GGG 0.554262 4.3:+20275897 None:intergenic
ATGGTCGTAGCCGTGGTGGA+AGG 0.555712 4.3:-20273877 MS.gene70370:CDS
TACTACGACGCTCATCATCA+TGG 0.556930 4.3:+20274218 None:intergenic
ACCTTCTCTTGCTGGGACTG+CGG 0.558264 4.3:+20275123 None:intergenic
AACAAGGAGAGAGTAGGTAT+CGG 0.558892 4.3:+20276086 None:intergenic
ACCATTTGAATTTCGAGGAG+AGG 0.563905 4.3:+20273817 None:intergenic
AAGGGCTCCTCTTTGGAGAA+GGG 0.567143 4.3:+20273969 None:intergenic
AAGGGCTCCTCTTTGGAGAA+GGG 0.569675 4.3:+20273987 None:intergenic
GTTGTTTGATAAGTATGGCA+AGG 0.571156 4.3:-20275936 MS.gene70370:CDS
AGAGGAGCCCTTCTCTGAAG+AGG 0.576065 4.3:-20273958 MS.gene70370:CDS
GAGGGGCTTCGAGAAGCACC+AGG 0.580771 4.3:+20273836 None:intergenic
CAGACACCGTGGGAGAGATA+GGG 0.582711 4.3:-20274305 MS.gene70370:CDS
GATATGCTCCTCTTCAGAGA+AGG 0.584099 4.3:+20273950 None:intergenic
AGAAGCCGTAGTGCTAGTCC+TGG 0.586089 4.3:-20274265 MS.gene70370:CDS
TAGAAGCCGAAGCAGATCAG+TGG 0.590371 4.3:-20274197 MS.gene70370:CDS
CAACCATGTCTCACTTCGGT+AGG 0.602311 4.3:-20276128 None:intergenic
GAAAGGACTGGTGAATCGAG+AGG 0.603562 4.3:-20275797 MS.gene70370:intron
ATATGCTCCTCTTCAGAGAA+GGG 0.603871 4.3:+20273951 None:intergenic
CCCCGAGATCAAAGAGCTCA+AGG 0.604164 4.3:-20275148 MS.gene70370:CDS
CATTTGAATTTCGAGGAGAG+GGG 0.610211 4.3:+20273819 None:intergenic
CTAAAAGGAGCCCTTCTCCA+AGG 0.613769 4.3:-20274051 MS.gene70370:CDS
GGAAGGTGATGTTGAGAACA+AGG 0.616882 4.3:+20276070 None:intergenic
CCTGATGGTCGTAGCCGTGG+TGG 0.624450 4.3:-20273881 MS.gene70370:CDS
CCACTCCGTGAAAGTCCTGA+TGG 0.627964 4.3:-20273896 MS.gene70370:CDS
AAATCAACCATGTCTCACTT+CGG 0.630425 4.3:-20276132 None:intergenic
AGTCCTGATGGTCGTAGCCG+TGG 0.632068 4.3:-20273884 MS.gene70370:CDS
TTGCCATACTTATCAAACAA+CGG 0.633797 4.3:+20275938 None:intergenic
AAACAACGGAAATAGGTCAT+CGG 0.637663 4.3:+20275952 None:intergenic
TCTTTATCCCCAAAGATCGA+AGG 0.640188 4.3:-20275904 MS.gene70370:intron
AGAGGAGCCCTTCTCCAAAG+AGG 0.643213 4.3:-20273976 MS.gene70370:CDS
AGAGGAGCCCTTCTCCAAAG+AGG 0.643213 4.3:-20273994 MS.gene70370:CDS
TGTAACCAGGACTAGCACTA+CGG 0.646574 4.3:+20274260 None:intergenic
AAGGCTGTTGATAGGCTCGA+CGG 0.648087 4.3:-20275734 MS.gene70370:intron
AGAGGAGCCCATCTCCAAAG+AGG 0.655051 4.3:-20274012 MS.gene70370:CDS
GGAGGAGCCCATCTCCAAAG+AGG 0.655051 4.3:-20274030 MS.gene70370:CDS
TGACCTACCGAAGTGAGACA+TGG 0.657356 4.3:+20276125 None:intergenic
ACAAAGAAAAGGATTACAGG+AGG 0.659007 4.3:-20274366 MS.gene70370:CDS
GATGGTCCCTATCTCTCCCA+CGG 0.664269 4.3:+20274299 None:intergenic
CCATCAGGACTTTCACGGAG+TGG 0.667072 4.3:+20273896 None:intergenic
CGAGAAGCACCAGGACTGCG+AGG 0.670237 4.3:+20273845 None:intergenic
AGTGCTAGTCCTGGTTACAA+GGG 0.676008 4.3:-20274256 MS.gene70370:CDS
TAGGTATCGGAGATGTCTGG+AGG 0.687472 4.3:+20276099 None:intergenic
CATGAACGTGACAGACACCG+TGG 0.695959 4.3:-20274316 MS.gene70370:CDS
ATGAACGTGACAGACACCGT+GGG 0.698318 4.3:-20274315 MS.gene70370:CDS
AATAGAACTGCGTCGCACTG+GGG 0.699899 4.3:+20274075 None:intergenic
AAAGGAGCCCTTCTCCAAGG+AGG 0.702723 4.3:-20274048 MS.gene70370:CDS
CAACGGAAATAGGTCATCGG+CGG 0.703502 4.3:+20275955 None:intergenic
GCGTAAAAGACCTTCCACCA+CGG 0.704034 4.3:+20273867 None:intergenic
AATATGGCCCTAATGCTGAG+AGG 0.735571 4.3:-20275583 MS.gene70370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTGATAAATGAAAAATT+GGG + chr4.3:20273969-20273988 None:intergenic 10.0%
!! TAATTTGATAAATGAAAAAT+TGG + chr4.3:20273970-20273989 None:intergenic 10.0%
!! ATTTGATAAATGAAAAATTG+GGG + chr4.3:20273968-20273987 None:intergenic 15.0%
!!! ATTTTCTTGTATTTTTTGAA+AGG - chr4.3:20274003-20274022 MS.gene70370:CDS 15.0%
!!! ATTTTTCATTTTTGTTATGA+TGG - chr4.3:20274274-20274293 MS.gene70370:CDS 15.0%
!! AAATTTGAGTGTAAAAATTG+TGG - chr4.3:20274468-20274487 MS.gene70370:intron 20.0%
!! CTTATTCTTGAACTTAATAA+TGG - chr4.3:20276040-20276059 MS.gene70370:intron 20.0%
!! TAAACATTCCAATTATCAAT+TGG - chr4.3:20275264-20275283 MS.gene70370:intron 20.0%
!! TCAAATAACAATAATTATGG+TGG + chr4.3:20275694-20275713 None:intergenic 20.0%
!! TTAACATGCTTAAATTTAAG+AGG + chr4.3:20274985-20275004 None:intergenic 20.0%
!! TTTGATAAATGAAAAATTGG+GGG + chr4.3:20273967-20273986 None:intergenic 20.0%
!!! TATTTTATTTACAGTCAGAA+AGG - chr4.3:20274629-20274648 MS.gene70370:intron 20.0%
! ACTAATGTCTAATTGTTTGT+AGG - chr4.3:20275415-20275434 MS.gene70370:intron 25.0%
! ATCATGATGTTTATATAACG+AGG - chr4.3:20274343-20274362 MS.gene70370:CDS 25.0%
! ATCATTGAAAATCCTAGAAA+TGG + chr4.3:20274881-20274900 None:intergenic 25.0%
! CAAATGTAAATAGAATTGAG+CGG + chr4.3:20276117-20276136 None:intergenic 25.0%
! CATCATGATATAGAAAATCA+AGG + chr4.3:20274332-20274351 None:intergenic 25.0%
! GGCTCAAATAACAATAATTA+TGG + chr4.3:20275697-20275716 None:intergenic 25.0%
! TCAATTCTATTTACATTTGC+AGG - chr4.3:20276118-20276137 MS.gene70370:CDS 25.0%
! TTTACTACTGTACATTACAA+TGG + chr4.3:20275248-20275267 None:intergenic 25.0%
!! AGAGTGATCATTGAATTTTA+TGG - chr4.3:20274849-20274868 MS.gene70370:intron 25.0%
!! CATATCAACCAATTGATAAT+TGG + chr4.3:20275275-20275294 None:intergenic 25.0%
!! TTCAATTAGAAGTACAGTTT+AGG + chr4.3:20275071-20275090 None:intergenic 25.0%
!! TTCAATTAGAAGTACAGTTT+CGG + chr4.3:20275071-20275090 None:intergenic 25.0%
!!! AAGAAACGATTGATTTTTTC+AGG - chr4.3:20274170-20274189 MS.gene70370:intron 25.0%
!!! AATTGTCTTTTGTTGACTTT+TGG - chr4.3:20275191-20275210 MS.gene70370:intron 25.0%
!!! AGAAACGATTGATTTTTTCA+GGG - chr4.3:20274171-20274190 MS.gene70370:intron 25.0%
ACTACAAAGAAAAGGATTAC+AGG - chr4.3:20275448-20275467 MS.gene70370:intron 30.0%
ACTTATCAAACAACGGAAAT+AGG + chr4.3:20273875-20273894 None:intergenic 30.0%
GCTGTTGAGAATAACAAAAA+AGG + chr4.3:20275718-20275737 None:intergenic 30.0%
TATCAGTATGCAACTGAAAA+AGG + chr4.3:20274541-20274560 None:intergenic 30.0%
TTATTTACAGTCAGAAAGGA+AGG - chr4.3:20274633-20274652 MS.gene70370:intron 30.0%
TTGCCATACTTATCAAACAA+CGG + chr4.3:20273882-20273901 None:intergenic 30.0%
TTTCAGTTGCATACTGATAT+TGG - chr4.3:20274542-20274561 MS.gene70370:intron 30.0%
TTTCCGTTGTTTGATAAGTA+TGG - chr4.3:20273876-20273895 MS.gene70370:CDS 30.0%
TTTGAATACCTTCGATCTTT+GGG + chr4.3:20273924-20273943 None:intergenic 30.0%
! AACAGAGTGTTAGGTTAATT+AGG + chr4.3:20273823-20273842 None:intergenic 30.0%
! AATTGGTTGATATGCTCAAT+GGG - chr4.3:20275281-20275300 MS.gene70370:intron 30.0%
! TTTTGAATACCTTCGATCTT+TGG + chr4.3:20273925-20273944 None:intergenic 30.0%
!!! AGTTGTCTTTTGTTGACTTT+TGG - chr4.3:20275090-20275109 MS.gene70370:intron 30.0%
!!! ATTGATTTTTTCAGGGAGAA+TGG - chr4.3:20274178-20274197 MS.gene70370:intron 30.0%
!!! CTTGTATTTTTTGAAAGGAC+TGG - chr4.3:20274008-20274027 MS.gene70370:CDS 30.0%
AAACAACGGAAATAGGTCAT+CGG + chr4.3:20273868-20273887 None:intergenic 35.0%
AAACCCCACAGCTTATATTA+TGG - chr4.3:20275020-20275039 MS.gene70370:intron 35.0%
AAGAATGTCAAAACACCACT+GGG + chr4.3:20275368-20275387 None:intergenic 35.0%
ACAAAGAAAAGGATTACAGG+AGG - chr4.3:20275451-20275470 MS.gene70370:intron 35.0%
ACAACACTCTATAAGCAACA+AGG + chr4.3:20274743-20274762 None:intergenic 35.0%
ACACCATAATATAAGCTGTG+GGG + chr4.3:20275026-20275045 None:intergenic 35.0%
ACAGCTTATATTATGGTGTC+TGG - chr4.3:20275027-20275046 MS.gene70370:intron 35.0%
ACATCACCATTTGAATTTCG+AGG + chr4.3:20276008-20276027 None:intergenic 35.0%
ACTGTCCAGTTTGCAAAATA+TGG - chr4.3:20274218-20274237 MS.gene70370:CDS 35.0%
AGACACCATAATATAAGCTG+TGG + chr4.3:20275028-20275047 None:intergenic 35.0%
ATCTACAAGCACGATTACAA+TGG + chr4.3:20275147-20275166 None:intergenic 35.0%
CAGTTTGATTCTGCTTCTTA+AGG - chr4.3:20274945-20274964 MS.gene70370:intron 35.0%
GACACCATAATATAAGCTGT+GGG + chr4.3:20275027-20275046 None:intergenic 35.0%
GTTGTTTGATAAGTATGGCA+AGG - chr4.3:20273881-20273900 MS.gene70370:CDS 35.0%
TAACTCAAACATAAACCACG+TGG + chr4.3:20274442-20274461 None:intergenic 35.0%
TCGTGATGACTACAAAGAAA+AGG - chr4.3:20275440-20275459 MS.gene70370:intron 35.0%
TTATGGCTGAAACCATTTCT+AGG - chr4.3:20274866-20274885 MS.gene70370:intron 35.0%
TTGAATACCTTCGATCTTTG+GGG + chr4.3:20273923-20273942 None:intergenic 35.0%
TTGATTCTGCTTCTTAAGGA+GGG - chr4.3:20274949-20274968 MS.gene70370:intron 35.0%
TTTGATTCTGCTTCTTAAGG+AGG - chr4.3:20274948-20274967 MS.gene70370:intron 35.0%
! AGCCATCTTTGCTATCAAAT+AGG - chr4.3:20276070-20276089 MS.gene70370:CDS 35.0%
! AGGAAGAAAAACAGAGTGTT+AGG + chr4.3:20273832-20273851 None:intergenic 35.0%
! CAATTGGTTGATATGCTCAA+TGG - chr4.3:20275280-20275299 MS.gene70370:intron 35.0%
! GTTTAGGATATCTACAAGCA+TGG + chr4.3:20275055-20275074 None:intergenic 35.0%
! TGCCTATTTGATAGCAAAGA+TGG + chr4.3:20276075-20276094 None:intergenic 35.0%
!! TTATAGAGTGTTGTGGATGT+AGG - chr4.3:20274749-20274768 MS.gene70370:intron 35.0%
!! TTGTTGCTTATAGAGTGTTG+TGG - chr4.3:20274742-20274761 MS.gene70370:intron 35.0%
!!! GGGATCTTATGTGTTGTTTT+TGG - chr4.3:20275301-20275320 MS.gene70370:intron 35.0%
!!! GTCTTTTGTTGACTTTTGGT+AGG - chr4.3:20275094-20275113 MS.gene70370:intron 35.0%
AAATTGAGTTCAATGCCACG+TGG - chr4.3:20274424-20274443 MS.gene70370:intron 40.0%
AACAAGGAGAGAGTAGGTAT+CGG + chr4.3:20273734-20273753 None:intergenic 40.0%
ACAGAGAGAGAAGAGAGAAA+AGG + chr4.3:20273784-20273803 None:intergenic 40.0%
ACCATTTGAATTTCGAGGAG+AGG + chr4.3:20276003-20276022 None:intergenic 40.0%
ACTCTATAAGCAACAAGGAC+AGG + chr4.3:20274738-20274757 None:intergenic 40.0%
ACTTACATCCTCTCAGCATT+AGG + chr4.3:20274245-20274264 None:intergenic 40.0%
AGAGAAAAGGGTTTCGCTTA+CGG + chr4.3:20273771-20273790 None:intergenic 40.0%
ATATGCTCCTCTTCAGAGAA+GGG + chr4.3:20275869-20275888 None:intergenic 40.0%
ATATGCTGATGAAGCTTCCA+AGG - chr4.3:20274064-20274083 MS.gene70370:CDS 40.0%
CAAGAATGTCAAAACACCAC+TGG + chr4.3:20275369-20275388 None:intergenic 40.0%
CAGAGAGAGAAGAGAGAAAA+GGG + chr4.3:20273783-20273802 None:intergenic 40.0%
CATTTGAATTTCGAGGAGAG+GGG + chr4.3:20276001-20276020 None:intergenic 40.0%
CCATTTGAATTTCGAGGAGA+GGG + chr4.3:20276002-20276021 None:intergenic 40.0%
CTTACATCCTCTCAGCATTA+GGG + chr4.3:20274244-20274263 None:intergenic 40.0%
GACGCAGTTCTATTCCTAAA+AGG - chr4.3:20275751-20275770 MS.gene70370:CDS 40.0%
TAGAATTGAGCGGTTACAGA+AGG + chr4.3:20276107-20276126 None:intergenic 40.0%
TCTTTATCCCCAAAGATCGA+AGG - chr4.3:20273913-20273932 MS.gene70370:CDS 40.0%
TGATTCTGCTTCTTAAGGAG+GGG - chr4.3:20274950-20274969 MS.gene70370:intron 40.0%
TGCATACTGATATTGGATGC+TGG - chr4.3:20274549-20274568 MS.gene70370:intron 40.0%
! TAGGGCCATATTTTGCAAAC+TGG + chr4.3:20274226-20274245 None:intergenic 40.0%
! TTGTGGATGTAGGAGAGTTT+TGG - chr4.3:20274759-20274778 MS.gene70370:intron 40.0%
!! CACTCTGTTTTTCTTCCTCT+AGG - chr4.3:20273834-20273853 MS.gene70370:CDS 40.0%
!! TTTTCAGGGAGAATGGTTGA+TGG - chr4.3:20274185-20274204 MS.gene70370:intron 40.0%
AAAAGGGTTTCGCTTACGGA+AGG + chr4.3:20273767-20273786 None:intergenic 45.0%
AAGCTTCCAAGGCTGTTGAT+AGG - chr4.3:20274075-20274094 MS.gene70370:CDS 45.0%
AATATGGCCCTAATGCTGAG+AGG - chr4.3:20274234-20274253 MS.gene70370:CDS 45.0%
AATTCACTTCTCGTACCCAG+TGG - chr4.3:20275350-20275369 MS.gene70370:intron 45.0%
AGTGCTAGTCCTGGTTACAA+GGG - chr4.3:20275561-20275580 MS.gene70370:intron 45.0%
CCCTCTCCTCGAAATTCAAA+TGG - chr4.3:20275999-20276018 MS.gene70370:intron 45.0%
CTCCTTGAGCTCTTTGATCT+CGG + chr4.3:20274674-20274693 None:intergenic 45.0%
GATATGCTCCTCTTCAGAGA+AGG + chr4.3:20275870-20275889 None:intergenic 45.0%
GGAAGGTGATGTTGAGAACA+AGG + chr4.3:20273750-20273769 None:intergenic 45.0%
GTTGAGAACAAGGAGAGAGT+AGG + chr4.3:20273740-20273759 None:intergenic 45.0%
TACGACCATCAGGACTTTCA+CGG + chr4.3:20275929-20275948 None:intergenic 45.0%
TACTACGACGCTCATCATCA+TGG + chr4.3:20275602-20275621 None:intergenic 45.0%
TAGTGCTAGTCCTGGTTACA+AGG - chr4.3:20275560-20275579 MS.gene70370:intron 45.0%
TCCTTGAGCTCTTTGATCTC+GGG + chr4.3:20274673-20274692 None:intergenic 45.0%
TGCATTCACCTTCTCTTGCT+GGG + chr4.3:20274704-20274723 None:intergenic 45.0%
! TGTAACCAGGACTAGCACTA+CGG + chr4.3:20275560-20275579 None:intergenic 45.0%
!! TGGATGTAGGAGAGTTTTGG+TGG - chr4.3:20274762-20274781 MS.gene70370:intron 45.0%
!! ATTTCATTTATTTAAAAAAA+AGG - chr4.3:20274126-20274145 MS.gene70370:intron 5.0%
!! TTTCATTTATTTAAAAAAAA+GGG - chr4.3:20274127-20274146 MS.gene70370:intron 5.0%
AATAGAACTGCGTCGCACTG+GGG + chr4.3:20275745-20275764 None:intergenic 50.0%
ACCTGTCCACTGATCTGCTT+CGG + chr4.3:20275629-20275648 None:intergenic 50.0%
ATGAACGTGACAGACACCGT+GGG - chr4.3:20275502-20275521 MS.gene70370:intron 50.0%
ATGTCTCACTTCGGTAGGTC+AGG - chr4.3:20273694-20273713 MS.gene70370:intron 50.0%
CAACGGAAATAGGTCATCGG+CGG + chr4.3:20273865-20273884 None:intergenic 50.0%
CCTTGAGCTCTTTGATCTCG+GGG + chr4.3:20274672-20274691 None:intergenic 50.0%
CTAAAAGGAGCCCTTCTCCA+AGG - chr4.3:20275766-20275785 MS.gene70370:CDS 50.0%
GAATAGAACTGCGTCGCACT+GGG + chr4.3:20275746-20275765 None:intergenic 50.0%
GCGTAAAAGACCTTCCACCA+CGG + chr4.3:20275953-20275972 None:intergenic 50.0%
GTCGCAGCAGGAGTTATGAT+AGG - chr4.3:20275478-20275497 MS.gene70370:intron 50.0%
GTGCATTCACCTTCTCTTGC+TGG + chr4.3:20274705-20274724 None:intergenic 50.0%
TAGAAGCCGAAGCAGATCAG+TGG - chr4.3:20275620-20275639 MS.gene70370:CDS 50.0%
TAGCACTACGGCTTCTGCTT+CGG + chr4.3:20275548-20275567 None:intergenic 50.0%
TTCAGAGAAGGGCTCCTCTT+TGG + chr4.3:20275858-20275877 None:intergenic 50.0%
TTTGGAGAAGGGCTCCTCTT+TGG + chr4.3:20275822-20275841 None:intergenic 50.0%
! AAGGCTGTTGATAGGCTCGA+CGG - chr4.3:20274083-20274102 MS.gene70370:CDS 50.0%
! AAGGGCTCCTCTTTGGAGAA+GGG + chr4.3:20275833-20275852 None:intergenic 50.0%
! AAGGGCTCCTCTTTGGAGAT+GGG + chr4.3:20275815-20275834 None:intergenic 50.0%
! ATGGGCTCCTCTTTGGAGAT+GGG + chr4.3:20275797-20275816 None:intergenic 50.0%
! CCTGGGGGAAACACTCTTTT+GGG + chr4.3:20275895-20275914 None:intergenic 50.0%
! CTGGGGGAAACACTCTTTTG+GGG + chr4.3:20275894-20275913 None:intergenic 50.0%
! CTTGGAGAAGGGCTCCTTTT+AGG + chr4.3:20275768-20275787 None:intergenic 50.0%
! GAAAGGACTGGTGAATCGAG+AGG - chr4.3:20274020-20274039 MS.gene70370:CDS 50.0%
! TCCTGGGGGAAACACTCTTT+TGG + chr4.3:20275896-20275915 None:intergenic 50.0%
! TGGGGGAAACACTCTTTTGG+GGG + chr4.3:20275893-20275912 None:intergenic 50.0%
! TTTGGAGATGGGCTCCTCTT+TGG + chr4.3:20275804-20275823 None:intergenic 50.0%
!! GAGTAGGTATCGGAGATGTC+TGG + chr4.3:20273724-20273743 None:intergenic 50.0%
!! TAGGTATCGGAGATGTCTGG+AGG + chr4.3:20273721-20273740 None:intergenic 50.0%
!! TCACGGAGTGGACTTTTCCT+GGG + chr4.3:20275912-20275931 None:intergenic 50.0%
!! TTCACGGAGTGGACTTTTCC+TGG + chr4.3:20275913-20275932 None:intergenic 50.0%
AAAGGAGCCCTTCTCCAAGG+AGG - chr4.3:20275769-20275788 MS.gene70370:CDS 55.0%
ACAGACACCGTGGGAGAGAT+AGG - chr4.3:20275511-20275530 MS.gene70370:intron 55.0%
ACCTTCTCTTGCTGGGACTG+CGG + chr4.3:20274697-20274716 None:intergenic 55.0%
AGAAGCCGTAGTGCTAGTCC+TGG - chr4.3:20275552-20275571 MS.gene70370:intron 55.0%
AGAGGAGCCCATCTCCAAAG+AGG - chr4.3:20275805-20275824 MS.gene70370:intron 55.0%
AGAGGAGCCCTTCTCCAAAG+AGG - chr4.3:20275823-20275842 MS.gene70370:intron 55.0%
ATGGGCTCCTCCTTGGAGAA+GGG + chr4.3:20275779-20275798 None:intergenic 55.0%
CAGACACCGTGGGAGAGATA+GGG - chr4.3:20275512-20275531 MS.gene70370:intron 55.0%
CATGAACGTGACAGACACCG+TGG - chr4.3:20275501-20275520 MS.gene70370:intron 55.0%
CCACTCCGTGAAAGTCCTGA+TGG - chr4.3:20275921-20275940 MS.gene70370:CDS 55.0%
CCATCAGGACTTTCACGGAG+TGG + chr4.3:20275924-20275943 None:intergenic 55.0%
CCCCGAGATCAAAGAGCTCA+AGG - chr4.3:20274669-20274688 MS.gene70370:intron 55.0%
GATGGTCCCTATCTCTCCCA+CGG + chr4.3:20275521-20275540 None:intergenic 55.0%
GGAATAGAACTGCGTCGCAC+TGG + chr4.3:20275747-20275766 None:intergenic 55.0%
GTCGAGCCTATCAACAGCCT+TGG + chr4.3:20274084-20274103 None:intergenic 55.0%
TGGTTACAAGGGCCGTGGAA+GGG - chr4.3:20275572-20275591 MS.gene70370:intron 55.0%
! AGAGGAGCCCTTCTCTGAAG+AGG - chr4.3:20275859-20275878 MS.gene70370:intron 55.0%
! GAAGGGCTCCTCTTTGGAGA+AGG + chr4.3:20275816-20275835 None:intergenic 55.0%
! GAAGGGCTCCTCTTTGGAGA+TGG + chr4.3:20275816-20275835 None:intergenic 55.0%
! GATGGGCTCCTCTTTGGAGA+TGG + chr4.3:20275798-20275817 None:intergenic 55.0%
! GGGGGAAACACTCTTTTGGG+GGG + chr4.3:20275892-20275911 None:intergenic 55.0%
! TCTTTTACGCCTCGCAGTCC+TGG - chr4.3:20275963-20275982 MS.gene70370:CDS 55.0%
! TTTGGAGATGGGCTCCTCCT+TGG + chr4.3:20275786-20275805 None:intergenic 55.0%
!! ACGGAGTGGACTTTTCCTGG+GGG + chr4.3:20275910-20275929 None:intergenic 55.0%
!! CACGGAGTGGACTTTTCCTG+GGG + chr4.3:20275911-20275930 None:intergenic 55.0%
!! CCCAAAAGAGTGTTTCCCCC+AGG - chr4.3:20275892-20275911 MS.gene70370:intron 55.0%
ACAGGAGGAGAAGTCGCAGC+AGG - chr4.3:20275466-20275485 MS.gene70370:intron 60.0%
AGTCCTGATGGTCGTAGCCG+TGG - chr4.3:20275933-20275952 MS.gene70370:CDS 60.0%
AGTCCTGGTTACAAGGGCCG+TGG - chr4.3:20275567-20275586 MS.gene70370:intron 60.0%
CGGAAATAGGTCATCGGCGG+TGG + chr4.3:20273862-20273881 None:intergenic 60.0%
CTGGTTACAAGGGCCGTGGA+AGG - chr4.3:20275571-20275590 MS.gene70370:intron 60.0%
CTTCCACGGCCCTTGTAACC+AGG + chr4.3:20275573-20275592 None:intergenic 60.0%
GCCGAAGCAGATCAGTGGAC+AGG - chr4.3:20275625-20275644 MS.gene70370:CDS 60.0%
GGAGGAGCCCATCTCCAAAG+AGG - chr4.3:20275787-20275806 MS.gene70370:CDS 60.0%
GGTTACAAGGGCCGTGGAAG+GGG - chr4.3:20275573-20275592 MS.gene70370:intron 60.0%
GTTACAAGGGCCGTGGAAGG+GGG - chr4.3:20275574-20275593 MS.gene70370:intron 60.0%
! ATGGTCGTAGCCGTGGTGGA+AGG - chr4.3:20275940-20275959 MS.gene70370:CDS 60.0%
! GATGGGCTCCTCCTTGGAGA+AGG + chr4.3:20275780-20275799 None:intergenic 60.0%
AACTGCGTCGCACTGGGGAG+CGG + chr4.3:20275740-20275759 None:intergenic 65.0%
CATCATGGCGCCCCCTTCCA+CGG + chr4.3:20275587-20275606 None:intergenic 65.0%
CCACCACGGCTACGACCATC+AGG + chr4.3:20275939-20275958 None:intergenic 65.0%
CCTGATGGTCGTAGCCGTGG+TGG - chr4.3:20275936-20275955 MS.gene70370:CDS 65.0%
GCCGCAGTCCCAGCAAGAGA+AGG - chr4.3:20274693-20274712 MS.gene70370:intron 65.0%
GGCTTCTGCTTCGGCGACGA+TGG + chr4.3:20275539-20275558 None:intergenic 65.0%
TCATCGGCGGTGGTGCCTAG+AGG + chr4.3:20273852-20273871 None:intergenic 65.0%
!! CGAGAAGCACCAGGACTGCG+AGG + chr4.3:20275975-20275994 None:intergenic 65.0%
!! GAGGGGCTTCGAGAAGCACC+AGG + chr4.3:20275984-20276003 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 20273694 20276145 20273694 ID=MS.gene70370
chr4.3 mRNA 20273694 20276145 20273694 ID=MS.gene70370.t1;Parent=MS.gene70370
chr4.3 exon 20276070 20276145 20276070 ID=MS.gene70370.t1.exon1;Parent=MS.gene70370.t1
chr4.3 CDS 20276070 20276145 20276070 ID=cds.MS.gene70370.t1;Parent=MS.gene70370.t1
chr4.3 exon 20275905 20275983 20275905 ID=MS.gene70370.t1.exon2;Parent=MS.gene70370.t1
chr4.3 CDS 20275905 20275983 20275905 ID=cds.MS.gene70370.t1;Parent=MS.gene70370.t1
chr4.3 exon 20275735 20275814 20275735 ID=MS.gene70370.t1.exon3;Parent=MS.gene70370.t1
chr4.3 CDS 20275735 20275814 20275735 ID=cds.MS.gene70370.t1;Parent=MS.gene70370.t1
chr4.3 exon 20275581 20275647 20275581 ID=MS.gene70370.t1.exon4;Parent=MS.gene70370.t1
chr4.3 CDS 20275581 20275647 20275581 ID=cds.MS.gene70370.t1;Parent=MS.gene70370.t1
chr4.3 exon 20275125 20275196 20275125 ID=MS.gene70370.t1.exon5;Parent=MS.gene70370.t1
chr4.3 CDS 20275125 20275196 20275125 ID=cds.MS.gene70370.t1;Parent=MS.gene70370.t1
chr4.3 exon 20274193 20274402 20274193 ID=MS.gene70370.t1.exon6;Parent=MS.gene70370.t1
chr4.3 CDS 20274193 20274402 20274193 ID=cds.MS.gene70370.t1;Parent=MS.gene70370.t1
chr4.3 exon 20273814 20274102 20273814 ID=MS.gene70370.t1.exon7;Parent=MS.gene70370.t1
chr4.3 CDS 20273814 20274102 20273814 ID=cds.MS.gene70370.t1;Parent=MS.gene70370.t1
chr4.3 exon 20273694 20273699 20273694 ID=MS.gene70370.t1.exon8;Parent=MS.gene70370.t1
chr4.3 CDS 20273694 20273699 20273694 ID=cds.MS.gene70370.t1;Parent=MS.gene70370.t1
Gene Sequence

>MS.gene70370

ATGTCTCACTTCGGTAGGTCAGGTCCTCCAGACATCTCCGATACCTACTCTCTCCTTGTTCTCAACATCACCTTCCGTAAGCGAAACCCTTTTCTCTCTTCTCTCTCTGTTTTCTCTTATCTTTAACCTAATTAACCTAACACTCTGTTTTTCTTCCTCTAGGCACCACCGCCGATGACCTATTTCCGTTGTTTGATAAGTATGGCAAGGTTGTTGACATCTTTATCCCCAAAGATCGAAGGTATTCAAAAAGTTTTATTTTTTCAATTTCCCCCAATTTTTCATTTATCAAATTATTTATTTATTGAAATTTTCTTGTATTTTTTGAAAGGACTGGTGAATCGAGAGGTTTCGCTTTTGTGCGTTACAAATATGCTGATGAAGCTTCCAAGGCTGTTGATAGGCTCGACGGTATATGCTTCTTGTTAATTCATTTCATTTATTTAAAAAAAAGGGTTTTTTTTGTATGAATTTAAAAGAAACGATTGATTTTTTCAGGGAGAATGGTTGATGGTCGTGAAATAACTGTCCAGTTTGCAAAATATGGCCCTAATGCTGAGAGGATGTAAGTTTTATTCTTATTTTTCATTTTTGTTATGATGGTGCTGTTATTGTTATGTCAAATTAAAAATTTACCTTGATTTTCTATATCATGATGTTTATATAACGAGGTCAAACTAAGTGTGTGTTTGTTCATAAAAATTGATTTTGAATGAATTGATTTTAGTTAAAATTGAGTTCAATGCCACGTGGTTTATGTTTGAGTTAAACAGTAAATTTGAGTGTAAAAATTGTGGTTTGAGTCTAAAGCTACAAACACTAGCTTCAAGTTTGAATGAAATAGCCTTTTTCAGTTGCATACTGATATTGGATGCTGGTTAATATTTTTCTAATTGATTTTTTTTTTTGTGCAATTGTATGTAGCTAAGTTTATTTATTTTATTTACAGTCAGAAAGGAAGGATTATCGAAACATCCCCGAGATCAAAGAGCTCAAGGAGCCGCAGTCCCAGCAAGAGAAGGTGAATGCACTTTTTAATGTCCTGTCCTTGTTGCTTATAGAGTGTTGTGGATGTAGGAGAGTTTTGGTGGCTGCTATTTTGTGATGAGTGATGTTTCAACTACATGCGATTCTTGTTTTTTGTTTTCAATGTTCAGAGTGATCATTGAATTTTATGGCTGAAACCATTTCTAGGATTTTCAATGATACAGTTGATGCATTTATATGATGCTCAATCAAACTTGTATCTTGCAGTTTGATTCTGCTTCTTAAGGAGGGGATAATGTGACCTCTTAAATTTAAGCATGTTAATTTGTCTAATCAGTAAAACCCCACAGCTTATATTATGGTGTCTGGCGCCATGCTTGTAGATATCCTAAACTGTACTTCTAATTGAAGTTGTCTTTTGTTGACTTTTGGTAGGCTCTTTGAATGTCTTCTTTCATATCTGCCATTGTAATCGTGCTTGTAGATATCCGAAACTGTACTTCTAATTGAAATTGTCTTTTGTTGACTTTTGGTAGGCTCTGTGAATGTCTTCTTTCATATCTGCCATTGTAATGTACAGTAGTAAACATTCCAATTATCAATTGGTTGATATGCTCAATGGGATCTTATGTGTTGTTTTTGGTATTTTCTTATGTTAATACTTATTAAAATTCACTTCTCGTACCCAGTGGTGTTTTGACATTCTTGATTGACTTCGATAGAAATTTGTATTGACTAATGTCTAATTGTTTGTAGGCATCGTGATGACTACAAAGAAAAGGATTACAGGAGGAGAAGTCGCAGCAGGAGTTATGATAGGCATGAACGTGACAGACACCGTGGGAGAGATAGGGACCATCGTCGCCGAAGCAGAAGCCGTAGTGCTAGTCCTGGTTACAAGGGCCGTGGAAGGGGGCGCCATGATGATGAGCGTCGTAGTAGAAGCCGAAGCAGATCAGTGGACAGGTCTTCATTCATTGACATTTGAGCTTTTCAGCTGTGATTTTTCACCACCATAATTATTGTTATTTGAGCCTTTTTTGTTATTCTCAACAGCCGCTCCCCAGTGCGACGCAGTTCTATTCCTAAAAGGAGCCCTTCTCCAAGGAGGAGCCCATCTCCAAAGAGGAGCCCATCTCCAAAGAGGAGCCCTTCTCCAAAGAGGAGCCCTTCTCCAAAGAGGAGCCCTTCTCTGAAGAGGAGCATATCCCCCCAAAAGAGTGTTTCCCCCAGGAAAAGTCCACTCCGTGAAAGTCCTGATGGTCGTAGCCGTGGTGGAAGGTCTTTTACGCCTCGCAGTCCTGGTGCTTCTCGAAGCCCCTCTCCTCGAAATTCAAATGGTGATGTAAGTAAAGTAATCTTATTCTTGAACTTAATAATGGATCAAAAAGCCATCTTTGCTATCAAATAGGCATTTTTTTAACCTTCTGTAACCGCTCAATTCTATTTACATTTGCAGGAATAA

Protein sequence

>MS.gene70370.t1

MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIQKGRIIETSPRSKSSRSRSPSKRRHRDDYKEKDYRRRSRSRSYDRHERDRHRGRDRDHRRRSRSRSASPGYKGRGRGRHDDERRSRSRSRSVDSRSPVRRSSIPKRSPSPRRSPSPKRSPSPKRSPSPKRSPSPKRSPSLKRSISPQKSVSPRKSPLRESPDGRSRGGRSFTPRSPGASRSPSPRNSNGDE