Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70495.t1 | AES71719.2 | 97.7 | 311 | 7 | 0 | 43 | 353 | 39 | 349 | 1.20E-150 | 542.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70495.t1 | Q6L8G0 | 56.6 | 311 | 133 | 1 | 43 | 353 | 45 | 353 | 9.4e-91 | 335.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70495.t1 | G7J822 | 97.7 | 311 | 7 | 0 | 43 | 353 | 39 | 349 | 8.9e-151 | 542.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70495 | MS.gene045723 | PPI |
| MS.gene70495 | MS.gene009810 | PPI |
| MS.gene70495 | MS.gene54167 | PPI |
| MS.gene70495 | MS.gene50197 | PPI |
| MS.gene70495 | MS.gene038972 | PPI |
| MS.gene70495 | MS.gene56999 | PPI |
| MS.gene70495 | MS.gene066193 | PPI |
| MS.gene70495 | MS.gene62494 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70495.t1 | MTR_3g082050 | 97.688 | 346 | 8 | 0 | 8 | 353 | 4 | 349 | 0.0 | 692 |
| MS.gene70495.t1 | MTR_3g082050 | 95.129 | 349 | 17 | 0 | 5 | 353 | 29 | 377 | 0.0 | 618 |
| MS.gene70495.t1 | MTR_3g082050 | 98.107 | 317 | 6 | 0 | 37 | 353 | 56 | 372 | 0.0 | 605 |
| MS.gene70495.t1 | MTR_3g081640 | 84.488 | 361 | 48 | 3 | 1 | 353 | 1 | 361 | 0.0 | 595 |
| MS.gene70495.t1 | MTR_3g081580 | 83.520 | 358 | 54 | 2 | 1 | 353 | 1 | 358 | 0.0 | 584 |
| MS.gene70495.t1 | MTR_3g081690 | 93.605 | 344 | 15 | 1 | 8 | 351 | 4 | 340 | 0.0 | 583 |
| MS.gene70495.t1 | MTR_3g081690 | 93.651 | 315 | 13 | 1 | 37 | 351 | 56 | 363 | 0.0 | 560 |
| MS.gene70495.t1 | MTR_2g064310 | 59.943 | 352 | 132 | 5 | 9 | 353 | 9 | 358 | 2.11e-147 | 420 |
| MS.gene70495.t1 | MTR_3g081690 | 88.793 | 232 | 19 | 1 | 120 | 351 | 25 | 249 | 1.29e-131 | 376 |
| MS.gene70495.t1 | MTR_6g007687 | 51.884 | 345 | 153 | 4 | 10 | 350 | 9 | 344 | 6.99e-116 | 340 |
| MS.gene70495.t1 | MTR_3g081690 | 89.806 | 206 | 14 | 1 | 146 | 351 | 7 | 205 | 2.99e-115 | 333 |
| MS.gene70495.t1 | MTR_8g105030 | 50.144 | 347 | 170 | 3 | 2 | 347 | 3 | 347 | 5.75e-115 | 339 |
| MS.gene70495.t1 | MTR_3g081690 | 90.291 | 206 | 13 | 1 | 146 | 351 | 29 | 227 | 7.67e-115 | 333 |
| MS.gene70495.t1 | MTR_4g083570 | 50.725 | 345 | 165 | 2 | 9 | 353 | 11 | 350 | 2.28e-114 | 336 |
| MS.gene70495.t1 | MTR_3g104400 | 48.476 | 361 | 150 | 4 | 28 | 353 | 6 | 365 | 4.56e-105 | 313 |
| MS.gene70495.t1 | MTR_1g016120 | 46.448 | 366 | 155 | 5 | 26 | 353 | 12 | 374 | 1.35e-96 | 291 |
| MS.gene70495.t1 | MTR_5g071990 | 42.353 | 340 | 164 | 9 | 24 | 353 | 1 | 318 | 8.46e-77 | 239 |
| MS.gene70495.t1 | MTR_3g081630 | 69.231 | 65 | 9 | 2 | 77 | 132 | 20 | 82 | 1.32e-21 | 89.7 |
| MS.gene70495.t1 | MTR_4g006710 | 43.182 | 88 | 49 | 1 | 37 | 124 | 26 | 112 | 4.50e-15 | 71.2 |
| MS.gene70495.t1 | MTR_3g073950 | 30.612 | 147 | 47 | 3 | 1 | 147 | 1 | 92 | 1.33e-14 | 70.1 |
| MS.gene70495.t1 | MTR_2g097580 | 23.077 | 325 | 208 | 12 | 37 | 352 | 44 | 335 | 6.49e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70495.t1 | AT1G05300 | 55.525 | 362 | 150 | 6 | 1 | 353 | 1 | 360 | 2.15e-134 | 387 |
| MS.gene70495.t1 | AT3G12750 | 54.366 | 355 | 152 | 4 | 3 | 353 | 7 | 355 | 4.95e-134 | 386 |
| MS.gene70495.t1 | AT2G32270 | 54.875 | 359 | 129 | 6 | 5 | 353 | 4 | 339 | 2.33e-127 | 369 |
| MS.gene70495.t1 | AT1G31260 | 52.108 | 332 | 154 | 2 | 27 | 353 | 33 | 364 | 1.13e-117 | 345 |
| MS.gene70495.t1 | AT5G62160 | 49.036 | 363 | 164 | 7 | 2 | 353 | 3 | 355 | 3.27e-111 | 328 |
| MS.gene70495.t1 | AT2G04032 | 48.048 | 333 | 166 | 4 | 26 | 353 | 35 | 365 | 7.13e-106 | 315 |
| MS.gene70495.t1 | AT4G19690 | 47.564 | 349 | 166 | 5 | 9 | 353 | 12 | 347 | 1.80e-103 | 308 |
| MS.gene70495.t1 | AT1G10970 | 45.753 | 365 | 159 | 3 | 28 | 353 | 10 | 374 | 2.76e-99 | 298 |
| MS.gene70495.t1 | AT1G10970 | 45.753 | 365 | 159 | 3 | 28 | 353 | 10 | 374 | 2.76e-99 | 298 |
| MS.gene70495.t1 | AT1G60960 | 43.325 | 397 | 166 | 5 | 16 | 353 | 19 | 415 | 1.16e-97 | 296 |
| MS.gene70495.t1 | AT1G60960 | 43.325 | 397 | 166 | 5 | 16 | 353 | 29 | 425 | 1.44e-97 | 296 |
| MS.gene70495.t1 | AT4G19680 | 44.798 | 346 | 183 | 5 | 11 | 353 | 10 | 350 | 4.26e-97 | 292 |
| MS.gene70495.t1 | AT4G33020 | 41.240 | 371 | 168 | 5 | 29 | 353 | 25 | 391 | 3.14e-86 | 266 |
| MS.gene70495.t1 | AT4G33020 | 41.092 | 348 | 157 | 4 | 50 | 353 | 1 | 344 | 2.64e-80 | 249 |
| MS.gene70495.t1 | AT1G05300 | 52.720 | 239 | 105 | 5 | 26 | 258 | 29 | 265 | 1.18e-78 | 242 |
| MS.gene70495.t1 | AT2G30080 | 42.771 | 332 | 167 | 7 | 37 | 353 | 18 | 341 | 5.51e-76 | 238 |
| MS.gene70495.t1 | AT4G19680 | 42.510 | 247 | 134 | 5 | 11 | 254 | 10 | 251 | 9.39e-61 | 196 |
| MS.gene70495.t1 | AT4G19690 | 38.119 | 202 | 102 | 6 | 9 | 203 | 12 | 197 | 8.17e-34 | 124 |
| MS.gene70495.t1 | AT1G60960 | 44.595 | 148 | 77 | 1 | 16 | 158 | 29 | 176 | 2.43e-31 | 120 |
Find 79 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAAACCATTATTCTAAA+AGG | 0.128438 | 3.1:-66961200 | MS.gene70495:CDS |
| TGAAGATTCCTTCAACAATA+AGG | 0.241739 | 3.1:+66959653 | None:intergenic |
| CGCAGCTACCAATGGTCTTA+TGG | 0.248637 | 3.1:+66960737 | None:intergenic |
| TGCACATGGTCATATTTCTT+TGG | 0.273397 | 3.1:-66961091 | MS.gene70495:CDS |
| GGTGTTTGTCTCCCACTTCT+TGG | 0.290133 | 3.1:-66961456 | MS.gene70495:CDS |
| TGTTCTTCATTCTCCACGTC+TGG | 0.292100 | 3.1:+66961147 | None:intergenic |
| AGCTGGGATCTTAATCTATA+TGG | 0.309946 | 3.1:-66959620 | MS.gene70495:CDS |
| AAGAATGGTAGGCTTCAATT+TGG | 0.323201 | 3.1:-66959550 | MS.gene70495:CDS |
| TTGTTTAAACGAACATCCTT+GGG | 0.333916 | 3.1:-66961304 | MS.gene70495:CDS |
| CATCAGAACTTCTTCGTCAT+AGG | 0.342133 | 3.1:-66961062 | MS.gene70495:CDS |
| CACCGCTATGGGGACTCTTA+TGG | 0.349455 | 3.1:-66961247 | MS.gene70495:CDS |
| TCCTAGTAGAAGAGATATAT+TGG | 0.367561 | 3.1:+66959525 | None:intergenic |
| ATCTTCAATGCAGCTTCAGC+TGG | 0.368873 | 3.1:-66959637 | MS.gene70495:CDS |
| CCAACTGCCCTTATTGTTGA+AGG | 0.374782 | 3.1:-66959661 | MS.gene70495:CDS |
| GAAGATTCCTTCAACAATAA+GGG | 0.377298 | 3.1:+66959654 | None:intergenic |
| TTCTTTGAAGGCATGGGACT+TGG | 0.380444 | 3.1:-66960699 | MS.gene70495:CDS |
| TTCTAAAAGGGCACCGGCAC+AGG | 0.381340 | 3.1:-66961187 | MS.gene70495:CDS |
| AACACCTAGCTAAGCCCATT+TGG | 0.382789 | 3.1:+66959480 | None:intergenic |
| ATTGTTCACTCTGTTATCAT+AGG | 0.385296 | 3.1:-66960792 | MS.gene70495:CDS |
| GTATGTCTCTTCTAGCCAAA+TGG | 0.386544 | 3.1:-66959495 | MS.gene70495:CDS |
| TGTAGCTATGTGCACCGCTA+TGG | 0.403628 | 3.1:-66961259 | MS.gene70495:CDS |
| CTTGTTTAAACGAACATCCT+TGG | 0.412853 | 3.1:-66961305 | MS.gene70495:CDS |
| GTAGGAATAGGAATTGGCTT+AGG | 0.413766 | 3.1:-66959712 | MS.gene70495:CDS |
| TAATCATAGGTGTTGGAGTT+GGG | 0.414004 | 3.1:-66960819 | MS.gene70495:intron |
| GTTCTTCATTCTCCACGTCT+GGG | 0.415278 | 3.1:+66961148 | None:intergenic |
| TCAAAACCATTATTCTAAAA+GGG | 0.424815 | 3.1:-66961199 | MS.gene70495:CDS |
| TTGACTACTCCAGTAGGAAT+AGG | 0.425117 | 3.1:-66959724 | MS.gene70495:CDS |
| CACTCTGCGGCTATTAGAGT+TGG | 0.430490 | 3.1:+66961573 | None:intergenic |
| TATGTCTCTTCTAGCCAAAT+GGG | 0.432359 | 3.1:-66959494 | MS.gene70495:CDS |
| GCCTGACTTTCAACCTGTGC+CGG | 0.435020 | 3.1:+66961174 | None:intergenic |
| ATATTAGTTGCAAGTGCAAT+TGG | 0.435108 | 3.1:-66961477 | MS.gene70495:CDS |
| GTAGCTATGTGCACCGCTAT+GGG | 0.439643 | 3.1:-66961258 | MS.gene70495:CDS |
| ACCGGCACAGGTTGAAAGTC+AGG | 0.444330 | 3.1:-66961175 | MS.gene70495:CDS |
| AAGCCAATTCCTATTCCTAC+TGG | 0.450773 | 3.1:+66959715 | None:intergenic |
| GTAAGATTCTCAAAAGCATC+AGG | 0.451833 | 3.1:+66961333 | None:intergenic |
| CATCAGTTCTTTGAAGGCAT+GGG | 0.453138 | 3.1:-66960705 | MS.gene70495:CDS |
| TCATCAGTTCTTTGAAGGCA+TGG | 0.458960 | 3.1:-66960706 | MS.gene70495:CDS |
| ACTCCAGTAGGAATAGGAAT+TGG | 0.474881 | 3.1:-66959718 | MS.gene70495:CDS |
| ATCAGAACTTCTTCGTCATA+GGG | 0.504567 | 3.1:-66961061 | MS.gene70495:CDS |
| AGGAAGCACATGAATGAAAC+CGG | 0.505115 | 3.1:+66961353 | None:intergenic |
| GTGACGAAGAAGATGAAGAA+AGG | 0.513450 | 3.1:-66961545 | MS.gene70495:CDS |
| ACTTCTTGGCAAAGTGATAC+CGG | 0.514499 | 3.1:-66961442 | MS.gene70495:CDS |
| TAGGAATAGGAATTGGCTTA+GGG | 0.516025 | 3.1:-66959711 | MS.gene70495:CDS |
| GAGTCTATCAATTACAGTCA+TGG | 0.527216 | 3.1:-66959761 | MS.gene70495:CDS |
| ACTCTGCGGCTATTAGAGTT+GGG | 0.527671 | 3.1:+66961574 | None:intergenic |
| TTAATCATAGGTGTTGGAGT+TGG | 0.528223 | 3.1:-66960820 | MS.gene70495:intron |
| TGACGAAGAAGATGAAGAAA+GGG | 0.528446 | 3.1:-66961544 | MS.gene70495:CDS |
| AGTCTATCAATTACAGTCAT+GGG | 0.530284 | 3.1:-66959760 | MS.gene70495:CDS |
| TCGTCATAGGGTCATATCAC+AGG | 0.536885 | 3.1:-66961049 | MS.gene70495:intron |
| ATCATCAAAGCATTTGCTGC+CGG | 0.538366 | 3.1:-66961390 | MS.gene70495:CDS |
| TCCTAAAACCATAAGACCAT+TGG | 0.542272 | 3.1:-66960745 | MS.gene70495:CDS |
| ATATCTCTTCTACTAGGAGC+TGG | 0.544358 | 3.1:-66959520 | MS.gene70495:CDS |
| CCTTCAACAATAAGGGCAGT+TGG | 0.549952 | 3.1:+66959661 | None:intergenic |
| GTTATCATAGGAATTTCTCT+AGG | 0.552566 | 3.1:-66960780 | MS.gene70495:CDS |
| GGTATCACTTTGCCAAGAAG+TGG | 0.555619 | 3.1:+66961444 | None:intergenic |
| GCCGGTGTGATATTGTCCAC+CGG | 0.559061 | 3.1:-66961372 | MS.gene70495:CDS |
| TAGCTATGTGCACCGCTATG+GGG | 0.566177 | 3.1:-66961257 | MS.gene70495:CDS |
| AATCCAAGGATGCAAAAGAA+TGG | 0.566760 | 3.1:-66959565 | MS.gene70495:CDS |
| CAAGGATGCAAAAGAATGGT+AGG | 0.567010 | 3.1:-66959561 | MS.gene70495:CDS |
| CTGCTGACTTCATGAATCCA+AGG | 0.568200 | 3.1:-66959579 | MS.gene70495:CDS |
| TCCAATATATCTCTTCTACT+AGG | 0.568292 | 3.1:-66959526 | MS.gene70495:CDS |
| TTCTTCATTCTCCACGTCTG+GGG | 0.569832 | 3.1:+66961149 | None:intergenic |
| CATAGCTACAAAACCAGTGA+AGG | 0.576649 | 3.1:+66961272 | None:intergenic |
| ACTTGGAAGTTGTATAACTC+AGG | 0.582307 | 3.1:-66960682 | MS.gene70495:intron |
| TCTTCAATGCAGCTTCAGCT+GGG | 0.586228 | 3.1:-66959636 | MS.gene70495:CDS |
| CAAGGATGTTCGTTTAAACA+AGG | 0.587088 | 3.1:+66961306 | None:intergenic |
| TTTGCTTTGACTACTCCAGT+AGG | 0.595259 | 3.1:-66959730 | MS.gene70495:CDS |
| CCATTATTCTAAAAGGGCAC+CGG | 0.600771 | 3.1:-66961193 | MS.gene70495:CDS |
| AAAGTCAACGCAGCTACCAA+TGG | 0.608393 | 3.1:+66960729 | None:intergenic |
| AAGTCAGGCAACCCCAGACG+TGG | 0.622416 | 3.1:-66961160 | MS.gene70495:CDS |
| TGTTTAAACGAACATCCTTG+GGG | 0.637545 | 3.1:-66961303 | MS.gene70495:CDS |
| GTATCACTTTGCCAAGAAGT+GGG | 0.638859 | 3.1:+66961445 | None:intergenic |
| TTCGTCACATGTGCACTCTG+CGG | 0.662154 | 3.1:+66961560 | None:intergenic |
| ATAGCTACAAAACCAGTGAA+GGG | 0.670530 | 3.1:+66961273 | None:intergenic |
| GTGAAGGGAAAATCACCCCA+AGG | 0.675286 | 3.1:+66961288 | None:intergenic |
| ACCGGTGGACAATATCACAC+CGG | 0.694959 | 3.1:+66961371 | None:intergenic |
| AAGCACATGAATGAAACCGG+TGG | 0.696028 | 3.1:+66961356 | None:intergenic |
| GCATCACATAGTCATGCACA+TGG | 0.717102 | 3.1:-66961105 | MS.gene70495:CDS |
| AACCATAAGAGTCCCCATAG+CGG | 0.744809 | 3.1:+66961245 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAAATATATCTTTTTC+AGG | + | chr3.1:66959714-66959733 | None:intergenic | 10.0% |
| !!! | TAAAAAATATATCTTTTTCA+GGG | + | chr3.1:66959713-66959732 | None:intergenic | 10.0% |
| !!! | TGAAATTTTTTATTTGTATA+TGG | + | chr3.1:66961202-66961221 | None:intergenic | 10.0% |
| !! | ATTCTTCTTTCTTAATTAAT+CGG | - | chr3.1:66961009-66961028 | MS.gene70495:intron | 15.0% |
| !!! | TTTTTTTTTATAATAGTGAC+CGG | - | chr3.1:66960593-66960612 | MS.gene70495:intron | 15.0% |
| !!! | TTTTTTTTTGAGTTAATCAT+AGG | - | chr3.1:66960290-66960309 | MS.gene70495:intron | 15.0% |
| !! | AGTTCAACATTTATATTTCA+AGG | + | chr3.1:66960239-66960258 | None:intergenic | 20.0% |
| !! | GAATTGTGAAATATTAACTA+TGG | - | chr3.1:66960704-66960723 | MS.gene70495:CDS | 20.0% |
| !! | TAGGATTTCAAATATAAGTA+CGG | - | chr3.1:66960729-66960748 | MS.gene70495:CDS | 20.0% |
| !! | TGAAATATTAACTATGGATT+AGG | - | chr3.1:66960710-66960729 | MS.gene70495:CDS | 20.0% |
| !! | TTCAAAACCATTATTCTAAA+AGG | - | chr3.1:66959922-66959941 | MS.gene70495:intron | 20.0% |
| !! | TTTATTTGTATATGGAGATT+CGG | + | chr3.1:66961194-66961213 | None:intergenic | 20.0% |
| !!! | TCAAAACCATTATTCTAAAA+GGG | - | chr3.1:66959923-66959942 | MS.gene70495:intron | 20.0% |
| !!! | TTTTTGTTTATAATAGTGAC+CGG | + | chr3.1:66960483-66960502 | None:intergenic | 20.0% |
| ! | AACATATACAACAACAAACA+AGG | + | chr3.1:66960883-66960902 | None:intergenic | 25.0% |
| ! | AAGAATGCATACTAAAAAAG+CGG | + | chr3.1:66960995-66961014 | None:intergenic | 25.0% |
| ! | AATGATTGCACTTTCAATTA+AGG | + | chr3.1:66961326-66961345 | None:intergenic | 25.0% |
| ! | ACATATACAACAACAAACAA+GGG | + | chr3.1:66960882-66960901 | None:intergenic | 25.0% |
| !!! | TGTCTTTTCGTTACTTTTTT+GGG | - | chr3.1:66960958-66960977 | MS.gene70495:intron | 25.0% |
| !!! | TTGTCTTTTCGTTACTTTTT+TGG | - | chr3.1:66960957-66960976 | MS.gene70495:intron | 25.0% |
| AACCAAATCAAACTCATGAA+CGG | + | chr3.1:66960679-66960698 | None:intergenic | 30.0% | |
| AGTCTATCAATTACAGTCAT+GGG | - | chr3.1:66961362-66961381 | MS.gene70495:CDS | 30.0% | |
| ATATAAGTACGGTGAACTAT+TGG | - | chr3.1:66960740-66960759 | MS.gene70495:CDS | 30.0% | |
| ATATTAGTTGCAAGTGCAAT+TGG | - | chr3.1:66959645-66959664 | MS.gene70495:CDS | 30.0% | |
| ATTGTTCACTCTGTTATCAT+AGG | - | chr3.1:66960330-66960349 | MS.gene70495:intron | 30.0% | |
| CTTTCTTAATTAATCGGTGA+AGG | - | chr3.1:66961015-66961034 | MS.gene70495:intron | 30.0% | |
| GAAGATTCCTTCAACAATAA+GGG | + | chr3.1:66961471-66961490 | None:intergenic | 30.0% | |
| GGTGATTATTGAATTTCTCA+CGG | + | chr3.1:66961166-66961185 | None:intergenic | 30.0% | |
| GTTATCATAGGAATTTCTCT+AGG | - | chr3.1:66960342-66960361 | MS.gene70495:intron | 30.0% | |
| TCCAATATATCTCTTCTACT+AGG | - | chr3.1:66961596-66961615 | MS.gene70495:CDS | 30.0% | |
| TCCTAGTAGAAGAGATATAT+TGG | + | chr3.1:66961600-66961619 | None:intergenic | 30.0% | |
| TGAAGATTCCTTCAACAATA+AGG | + | chr3.1:66961472-66961491 | None:intergenic | 30.0% | |
| TTGTTTAAACGAACATCCTT+GGG | - | chr3.1:66959818-66959837 | MS.gene70495:intron | 30.0% | |
| ! | ACTTTTCATCAGTTCTTTGA+AGG | - | chr3.1:66960411-66960430 | MS.gene70495:intron | 30.0% |
| ! | TTTGAGTTAATCATAGGTGT+TGG | - | chr3.1:66960296-66960315 | MS.gene70495:intron | 30.0% |
| ! | TTTTATAATAGTGACCGGAT+GGG | - | chr3.1:66960598-66960617 | MS.gene70495:intron | 30.0% |
| ! | TTTTTATAATAGTGACCGGA+TGG | - | chr3.1:66960597-66960616 | MS.gene70495:intron | 30.0% |
| !!! | ATGGTTTTGAAAATAAGCAG+TGG | + | chr3.1:66959913-66959932 | None:intergenic | 30.0% |
| AAGAATGGTAGGCTTCAATT+TGG | - | chr3.1:66961572-66961591 | MS.gene70495:CDS | 35.0% | |
| AATCCAAGGATGCAAAAGAA+TGG | - | chr3.1:66961557-66961576 | MS.gene70495:CDS | 35.0% | |
| ACTTGGAAGTTGTATAACTC+AGG | - | chr3.1:66960440-66960459 | MS.gene70495:intron | 35.0% | |
| AGCTGGGATCTTAATCTATA+TGG | - | chr3.1:66961502-66961521 | MS.gene70495:CDS | 35.0% | |
| ATAGCTACAAAACCAGTGAA+GGG | + | chr3.1:66959852-66959871 | None:intergenic | 35.0% | |
| ATCAGAACTTCTTCGTCATA+GGG | - | chr3.1:66960061-66960080 | MS.gene70495:intron | 35.0% | |
| CAAGGATGTTCGTTTAAACA+AGG | + | chr3.1:66959819-66959838 | None:intergenic | 35.0% | |
| CACCAAACAAACAAATACAC+TGG | + | chr3.1:66960859-66960878 | None:intergenic | 35.0% | |
| CTGGTCATAAATCACTTGAA+AGG | + | chr3.1:66960840-66960859 | None:intergenic | 35.0% | |
| CTTGTTTAAACGAACATCCT+TGG | - | chr3.1:66959817-66959836 | MS.gene70495:intron | 35.0% | |
| GACCAGTGTATTTGTTTGTT+TGG | - | chr3.1:66960854-66960873 | MS.gene70495:intron | 35.0% | |
| GAGTCTATCAATTACAGTCA+TGG | - | chr3.1:66961361-66961380 | MS.gene70495:CDS | 35.0% | |
| GATATATTTGTACACCCATC+CGG | + | chr3.1:66960615-66960634 | None:intergenic | 35.0% | |
| GGTATATCATATACACCATC+CGG | - | chr3.1:66960461-66960480 | MS.gene70495:intron | 35.0% | |
| TATGTCTCTTCTAGCCAAAT+GGG | - | chr3.1:66961628-66961647 | MS.gene70495:CDS | 35.0% | |
| TCCTAAAACCATAAGACCAT+TGG | - | chr3.1:66960377-66960396 | MS.gene70495:intron | 35.0% | |
| TGACGAAGAAGATGAAGAAA+GGG | - | chr3.1:66959578-66959597 | MS.gene70495:CDS | 35.0% | |
| TGCACATGGTCATATTTCTT+TGG | - | chr3.1:66960031-66960050 | MS.gene70495:intron | 35.0% | |
| TGTTTAAACGAACATCCTTG+GGG | - | chr3.1:66959819-66959838 | MS.gene70495:intron | 35.0% | |
| TGTTTATAATAGTGACCGGA+TGG | + | chr3.1:66960479-66960498 | None:intergenic | 35.0% | |
| ! | ATTGAAAGTGCAATCATTGC+AGG | - | chr3.1:66961328-66961347 | MS.gene70495:CDS | 35.0% |
| ! | TAGGAATAGGAATTGGCTTA+GGG | - | chr3.1:66961411-66961430 | MS.gene70495:CDS | 35.0% |
| ! | TATTTTGTAGCGTAGAGCTT+TGG | + | chr3.1:66959610-66959629 | None:intergenic | 35.0% |
| !! | GTAAGATTCTCAAAAGCATC+AGG | + | chr3.1:66959792-66959811 | None:intergenic | 35.0% |
| !! | TAATCATAGGTGTTGGAGTT+GGG | - | chr3.1:66960303-66960322 | MS.gene70495:intron | 35.0% |
| !! | TTAATCATAGGTGTTGGAGT+TGG | - | chr3.1:66960302-66960321 | MS.gene70495:intron | 35.0% |
| !!! | ACCAATGGTCTTATGGTTTT+AGG | + | chr3.1:66960381-66960400 | None:intergenic | 35.0% |
| !!! | CTTTTCGTTACTTTTTTGGG+TGG | - | chr3.1:66960961-66960980 | MS.gene70495:intron | 35.0% |
| AAGCCAATTCCTATTCCTAC+TGG | + | chr3.1:66961410-66961429 | None:intergenic | 40.0% | |
| ACTCCAGTAGGAATAGGAAT+TGG | - | chr3.1:66961404-66961423 | MS.gene70495:CDS | 40.0% | |
| ACTTCTTGGCAAAGTGATAC+CGG | - | chr3.1:66959680-66959699 | MS.gene70495:CDS | 40.0% | |
| ATATCTCTTCTACTAGGAGC+TGG | - | chr3.1:66961602-66961621 | MS.gene70495:CDS | 40.0% | |
| CAAGGATGCAAAAGAATGGT+AGG | - | chr3.1:66961561-66961580 | MS.gene70495:CDS | 40.0% | |
| CATAGCTACAAAACCAGTGA+AGG | + | chr3.1:66959853-66959872 | None:intergenic | 40.0% | |
| CATCAGAACTTCTTCGTCAT+AGG | - | chr3.1:66960060-66960079 | MS.gene70495:intron | 40.0% | |
| GACCGTTCATGAGTTTGATT+TGG | - | chr3.1:66960674-66960693 | MS.gene70495:intron | 40.0% | |
| GTATCACTTTGCCAAGAAGT+GGG | + | chr3.1:66959680-66959699 | None:intergenic | 40.0% | |
| GTATGTCTCTTCTAGCCAAA+TGG | - | chr3.1:66961627-66961646 | MS.gene70495:CDS | 40.0% | |
| GTGACGAAGAAGATGAAGAA+AGG | - | chr3.1:66959577-66959596 | MS.gene70495:CDS | 40.0% | |
| TTGACTACTCCAGTAGGAAT+AGG | - | chr3.1:66961398-66961417 | MS.gene70495:CDS | 40.0% | |
| TTTGCTTTGACTACTCCAGT+AGG | - | chr3.1:66961392-66961411 | MS.gene70495:CDS | 40.0% | |
| ! | AGGAAGCACATGAATGAAAC+CGG | + | chr3.1:66959772-66959791 | None:intergenic | 40.0% |
| ! | ATCATCAAAGCATTTGCTGC+CGG | - | chr3.1:66959732-66959751 | MS.gene70495:CDS | 40.0% |
| ! | CATCAGTTCTTTGAAGGCAT+GGG | - | chr3.1:66960417-66960436 | MS.gene70495:intron | 40.0% |
| ! | CCATTATTCTAAAAGGGCAC+CGG | - | chr3.1:66959929-66959948 | MS.gene70495:intron | 40.0% |
| ! | CTACCATTCTTTTGCATCCT+TGG | + | chr3.1:66961563-66961582 | None:intergenic | 40.0% |
| ! | GTAGGAATAGGAATTGGCTT+AGG | - | chr3.1:66961410-66961429 | MS.gene70495:CDS | 40.0% |
| ! | GTATATGGAGATTCGGTTGA+AGG | + | chr3.1:66961187-66961206 | None:intergenic | 40.0% |
| ! | TCATCAGTTCTTTGAAGGCA+TGG | - | chr3.1:66960416-66960435 | MS.gene70495:intron | 40.0% |
| AAAGTCAACGCAGCTACCAA+TGG | + | chr3.1:66960396-66960415 | None:intergenic | 45.0% | |
| AACCATAAGAGTCCCCATAG+CGG | + | chr3.1:66959880-66959899 | None:intergenic | 45.0% | |
| AAGCACATGAATGAAACCGG+TGG | + | chr3.1:66959769-66959788 | None:intergenic | 45.0% | |
| ACTCTGCGGCTATTAGAGTT+GGG | + | chr3.1:66959551-66959570 | None:intergenic | 45.0% | |
| ATCTTCAATGCAGCTTCAGC+TGG | - | chr3.1:66961485-66961504 | MS.gene70495:CDS | 45.0% | |
| CCAACTGCCCTTATTGTTGA+AGG | - | chr3.1:66961461-66961480 | MS.gene70495:CDS | 45.0% | |
| CCTTCAACAATAAGGGCAGT+TGG | + | chr3.1:66961464-66961483 | None:intergenic | 45.0% | |
| GCATCACATAGTCATGCACA+TGG | - | chr3.1:66960017-66960036 | MS.gene70495:intron | 45.0% | |
| GGTATCACTTTGCCAAGAAG+TGG | + | chr3.1:66959681-66959700 | None:intergenic | 45.0% | |
| GTTCTTCATTCTCCACGTCT+GGG | + | chr3.1:66959977-66959996 | None:intergenic | 45.0% | |
| TCGTCATAGGGTCATATCAC+AGG | - | chr3.1:66960073-66960092 | MS.gene70495:intron | 45.0% | |
| TCTTCAATGCAGCTTCAGCT+GGG | - | chr3.1:66961486-66961505 | MS.gene70495:CDS | 45.0% | |
| TGTTCTTCATTCTCCACGTC+TGG | + | chr3.1:66959978-66959997 | None:intergenic | 45.0% | |
| TTCTTCATTCTCCACGTCTG+GGG | + | chr3.1:66959976-66959995 | None:intergenic | 45.0% | |
| ! | TTCTTTGAAGGCATGGGACT+TGG | - | chr3.1:66960423-66960442 | MS.gene70495:intron | 45.0% |
| !! | CTGCTGACTTCATGAATCCA+AGG | - | chr3.1:66961543-66961562 | MS.gene70495:CDS | 45.0% |
| !!! | CCGGTGCCCTTTTAGAATAA+TGG | + | chr3.1:66959932-66959951 | None:intergenic | 45.0% |
| !!! | TCTTTTTCAGGGCTTAACGC+CGG | + | chr3.1:66959702-66959721 | None:intergenic | 45.0% |
| ACCGGTGGACAATATCACAC+CGG | + | chr3.1:66959754-66959773 | None:intergenic | 50.0% | |
| CACTCTGCGGCTATTAGAGT+TGG | + | chr3.1:66959552-66959571 | None:intergenic | 50.0% | |
| GGTGTTTGTCTCCCACTTCT+TGG | - | chr3.1:66959666-66959685 | MS.gene70495:CDS | 50.0% | |
| GTAGCTATGTGCACCGCTAT+GGG | - | chr3.1:66959864-66959883 | MS.gene70495:intron | 50.0% | |
| GTGAAGGGAAAATCACCCCA+AGG | + | chr3.1:66959837-66959856 | None:intergenic | 50.0% | |
| TAGCTATGTGCACCGCTATG+GGG | - | chr3.1:66959865-66959884 | MS.gene70495:intron | 50.0% | |
| TGTAGCTATGTGCACCGCTA+TGG | - | chr3.1:66959863-66959882 | MS.gene70495:intron | 50.0% | |
| TTCGTCACATGTGCACTCTG+CGG | + | chr3.1:66959565-66959584 | None:intergenic | 50.0% | |
| ! | CGCAGCTACCAATGGTCTTA+TGG | + | chr3.1:66960388-66960407 | None:intergenic | 50.0% |
| ! | TGGGGTGATTTTCCCTTCAC+TGG | - | chr3.1:66959837-66959856 | MS.gene70495:intron | 50.0% |
| CACCGCTATGGGGACTCTTA+TGG | - | chr3.1:66959875-66959894 | MS.gene70495:intron | 55.0% | |
| GCCGGTGTGATATTGTCCAC+CGG | - | chr3.1:66959750-66959769 | MS.gene70495:CDS | 55.0% | |
| GCCTGACTTTCAACCTGTGC+CGG | + | chr3.1:66959951-66959970 | None:intergenic | 55.0% | |
| ! | ACCGGCACAGGTTGAAAGTC+AGG | - | chr3.1:66959947-66959966 | MS.gene70495:intron | 55.0% |
| !! | TTCTAAAAGGGCACCGGCAC+AGG | - | chr3.1:66959935-66959954 | MS.gene70495:intron | 55.0% |
| AAGTCAGGCAACCCCAGACG+TGG | - | chr3.1:66959962-66959981 | MS.gene70495:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 66959489 | 66961655 | 66959489 | ID=MS.gene70495 |
| chr3.1 | mRNA | 66959489 | 66961655 | 66959489 | ID=MS.gene70495.t1;Parent=MS.gene70495 |
| chr3.1 | exon | 66961050 | 66961655 | 66961050 | ID=MS.gene70495.t1.exon1;Parent=MS.gene70495.t1 |
| chr3.1 | CDS | 66961050 | 66961655 | 66961050 | ID=cds.MS.gene70495.t1;Parent=MS.gene70495.t1 |
| chr3.1 | exon | 66960683 | 66960832 | 66960683 | ID=MS.gene70495.t1.exon2;Parent=MS.gene70495.t1 |
| chr3.1 | CDS | 66960683 | 66960832 | 66960683 | ID=cds.MS.gene70495.t1;Parent=MS.gene70495.t1 |
| chr3.1 | exon | 66959489 | 66959794 | 66959489 | ID=MS.gene70495.t1.exon3;Parent=MS.gene70495.t1 |
| chr3.1 | CDS | 66959489 | 66959794 | 66959489 | ID=cds.MS.gene70495.t1;Parent=MS.gene70495.t1 |
| Gene Sequence |
| Protein sequence |
