Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70499.t1 | XP_013461171.1 | 91.7 | 361 | 30 | 0 | 1 | 361 | 1 | 361 | 6.90E-165 | 590.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70499.t1 | Q6L8G0 | 52.4 | 353 | 158 | 2 | 9 | 361 | 11 | 353 | 6.0e-93 | 342.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70499.t1 | A0A072VAI3 | 91.7 | 361 | 30 | 0 | 1 | 361 | 1 | 361 | 5.0e-165 | 590.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene54167 | MS.gene70499 | PPI |
| MS.gene009810 | MS.gene70499 | PPI |
| MS.gene038972 | MS.gene70499 | PPI |
| MS.gene50197 | MS.gene70499 | PPI |
| MS.gene62494 | MS.gene70499 | PPI |
| MS.gene045723 | MS.gene70499 | PPI |
| MS.gene066193 | MS.gene70499 | PPI |
| MS.gene56999 | MS.gene70499 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70499.t1 | MTR_3g081640 | 96.122 | 361 | 14 | 0 | 1 | 361 | 1 | 361 | 0.0 | 681 |
| MS.gene70499.t1 | MTR_3g081580 | 85.440 | 364 | 44 | 4 | 1 | 361 | 1 | 358 | 0.0 | 595 |
| MS.gene70499.t1 | MTR_3g082050 | 85.873 | 361 | 39 | 4 | 1 | 361 | 1 | 349 | 0.0 | 561 |
| MS.gene70499.t1 | MTR_3g082050 | 86.402 | 353 | 39 | 4 | 9 | 361 | 34 | 377 | 0.0 | 555 |
| MS.gene70499.t1 | MTR_3g082050 | 88.615 | 325 | 29 | 3 | 37 | 361 | 56 | 372 | 0.0 | 546 |
| MS.gene70499.t1 | MTR_3g081690 | 85.380 | 342 | 38 | 4 | 1 | 342 | 1 | 330 | 0.0 | 522 |
| MS.gene70499.t1 | MTR_3g081690 | 88.235 | 306 | 28 | 3 | 37 | 342 | 56 | 353 | 0.0 | 506 |
| MS.gene70499.t1 | MTR_2g064310 | 57.263 | 358 | 142 | 5 | 7 | 361 | 9 | 358 | 1.52e-141 | 405 |
| MS.gene70499.t1 | MTR_3g081690 | 80.769 | 234 | 34 | 4 | 112 | 342 | 14 | 239 | 2.10e-113 | 330 |
| MS.gene70499.t1 | MTR_6g007687 | 49.858 | 351 | 149 | 5 | 15 | 358 | 14 | 344 | 1.83e-111 | 329 |
| MS.gene70499.t1 | MTR_8g105030 | 49.153 | 354 | 161 | 4 | 6 | 355 | 9 | 347 | 1.03e-110 | 328 |
| MS.gene70499.t1 | MTR_4g083570 | 50.000 | 352 | 163 | 4 | 11 | 361 | 11 | 350 | 2.97e-110 | 326 |
| MS.gene70499.t1 | MTR_3g104400 | 47.922 | 361 | 160 | 4 | 28 | 361 | 6 | 365 | 1.24e-103 | 310 |
| MS.gene70499.t1 | MTR_1g016120 | 46.006 | 363 | 169 | 5 | 26 | 361 | 12 | 374 | 1.85e-97 | 294 |
| MS.gene70499.t1 | MTR_3g081690 | 79.907 | 214 | 28 | 4 | 146 | 359 | 7 | 205 | 4.86e-97 | 287 |
| MS.gene70499.t1 | MTR_3g081690 | 84.772 | 197 | 22 | 3 | 146 | 342 | 29 | 217 | 6.73e-97 | 287 |
| MS.gene70499.t1 | MTR_5g071990 | 40.173 | 346 | 171 | 7 | 24 | 361 | 1 | 318 | 1.80e-75 | 236 |
| MS.gene70499.t1 | MTR_3g081630 | 70.769 | 65 | 8 | 2 | 77 | 132 | 20 | 82 | 2.29e-22 | 91.7 |
| MS.gene70499.t1 | MTR_4g006710 | 43.182 | 88 | 49 | 1 | 37 | 124 | 26 | 112 | 2.78e-15 | 71.6 |
| MS.gene70499.t1 | MTR_3g073950 | 30.625 | 160 | 50 | 5 | 1 | 160 | 1 | 99 | 5.95e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70499.t1 | AT3G12750 | 56.410 | 351 | 137 | 5 | 14 | 361 | 18 | 355 | 2.69e-134 | 387 |
| MS.gene70499.t1 | AT1G05300 | 55.752 | 339 | 140 | 5 | 26 | 361 | 29 | 360 | 3.83e-130 | 377 |
| MS.gene70499.t1 | AT2G32270 | 54.328 | 335 | 123 | 2 | 27 | 361 | 35 | 339 | 1.86e-123 | 359 |
| MS.gene70499.t1 | AT1G31260 | 51.632 | 337 | 156 | 4 | 27 | 361 | 33 | 364 | 2.95e-113 | 334 |
| MS.gene70499.t1 | AT5G62160 | 49.860 | 357 | 156 | 7 | 14 | 361 | 13 | 355 | 1.17e-110 | 327 |
| MS.gene70499.t1 | AT2G04032 | 47.164 | 335 | 168 | 2 | 30 | 361 | 37 | 365 | 6.19e-106 | 315 |
| MS.gene70499.t1 | AT4G19690 | 45.833 | 360 | 162 | 4 | 11 | 361 | 12 | 347 | 1.07e-103 | 309 |
| MS.gene70499.t1 | AT4G19680 | 45.531 | 358 | 176 | 6 | 10 | 361 | 6 | 350 | 1.14e-97 | 294 |
| MS.gene70499.t1 | AT1G10970 | 45.902 | 366 | 165 | 5 | 28 | 361 | 10 | 374 | 1.01e-96 | 292 |
| MS.gene70499.t1 | AT1G10970 | 45.902 | 366 | 165 | 5 | 28 | 361 | 10 | 374 | 1.01e-96 | 292 |
| MS.gene70499.t1 | AT1G60960 | 41.814 | 397 | 180 | 4 | 16 | 361 | 19 | 415 | 8.56e-94 | 286 |
| MS.gene70499.t1 | AT1G60960 | 41.814 | 397 | 180 | 4 | 16 | 361 | 29 | 425 | 1.17e-93 | 286 |
| MS.gene70499.t1 | AT4G33020 | 40.000 | 370 | 182 | 4 | 29 | 361 | 25 | 391 | 1.87e-82 | 256 |
| MS.gene70499.t1 | AT1G05300 | 51.639 | 244 | 108 | 5 | 26 | 266 | 29 | 265 | 2.93e-77 | 239 |
| MS.gene70499.t1 | AT4G33020 | 39.193 | 347 | 173 | 3 | 50 | 361 | 1 | 344 | 2.06e-75 | 237 |
| MS.gene70499.t1 | AT2G30080 | 41.916 | 334 | 175 | 6 | 37 | 361 | 18 | 341 | 2.19e-75 | 236 |
| MS.gene70499.t1 | AT4G19680 | 43.243 | 259 | 128 | 6 | 10 | 262 | 6 | 251 | 1.73e-60 | 195 |
| MS.gene70499.t1 | AT4G19690 | 35.714 | 210 | 102 | 4 | 11 | 211 | 12 | 197 | 2.52e-34 | 126 |
| MS.gene70499.t1 | AT1G60960 | 40.000 | 155 | 88 | 1 | 16 | 165 | 29 | 183 | 6.93e-29 | 114 |
Find 76 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGAATCGTTATTCTAAA+AGG | 0.149094 | 3.1:-67008073 | MS.gene70499:CDS |
| TCTTACTTCACCTTGTTTAA+AGG | 0.201042 | 3.1:-67008189 | MS.gene70499:CDS |
| TACAACCAGCTCCTAATAAA+AGG | 0.216157 | 3.1:+67006929 | None:intergenic |
| GTAGGAATTGGAATTGGTTT+AGG | 0.227156 | 3.1:-67007126 | MS.gene70499:CDS |
| TCATTATAGGTGTTGGAGTT+AGG | 0.272478 | 3.1:-67007725 | MS.gene70499:intron |
| AGCTGGTATCTTAATCTATA+TGG | 0.297254 | 3.1:-67007034 | MS.gene70499:CDS |
| CATCAGAACTTCTTCGTCAT+AGG | 0.305262 | 3.1:-67007911 | MS.gene70499:CDS |
| GGTGTTTGTATCCCACTTCT+TGG | 0.306746 | 3.1:-67008329 | MS.gene70499:CDS |
| AGCTTCCTTCTCCACATCTA+AGG | 0.307263 | 3.1:+67008013 | None:intergenic |
| TAGGAATTGGAATTGGTTTA+GGG | 0.309747 | 3.1:-67007125 | MS.gene70499:CDS |
| ATTGTCCACTCTGTTATAAT+AGG | 0.310250 | 3.1:-67007698 | MS.gene70499:CDS |
| TGCAGCTACAAGCGGCCTTA+TGG | 0.335829 | 3.1:+67007643 | None:intergenic |
| TTGACTACTCCAGTAGGAAT+TGG | 0.341385 | 3.1:-67007138 | MS.gene70499:CDS |
| TACAAACTCTTAAGCCCATT+TGG | 0.351668 | 3.1:+67006894 | None:intergenic |
| TTGTTTAAAGGAACATCCTT+GGG | 0.364281 | 3.1:-67008177 | MS.gene70499:CDS |
| CATTATAGGTGTTGGAGTTA+GGG | 0.366275 | 3.1:-67007724 | MS.gene70499:intron |
| GTATGTCTCTTCTAGCCAAA+TGG | 0.386544 | 3.1:-67006909 | MS.gene70499:CDS |
| CCTTCAACAATAAGTGCGTT+TGG | 0.386749 | 3.1:+67007075 | None:intergenic |
| GTGGCTATGTGCACTGCTAT+GGG | 0.406127 | 3.1:-67008131 | MS.gene70499:CDS |
| TGTGGCTATGTGCACTGCTA+TGG | 0.422472 | 3.1:-67008132 | MS.gene70499:CDS |
| TCAGAATCGTTATTCTAAAA+GGG | 0.425996 | 3.1:-67008072 | MS.gene70499:CDS |
| CCAAACGCACTTATTGTTGA+AGG | 0.427454 | 3.1:-67007075 | MS.gene70499:CDS |
| TATGTCTCTTCTAGCCAAAT+GGG | 0.432359 | 3.1:-67006908 | MS.gene70499:CDS |
| ATCTTTAATGCAGCTTCAGC+TGG | 0.437614 | 3.1:-67007051 | MS.gene70499:CDS |
| AAGAGTGGTAAACTTCGATT+AGG | 0.445141 | 3.1:-67006964 | MS.gene70499:CDS |
| CACTGCTATGGGGTCTCTCA+TGG | 0.447113 | 3.1:-67008120 | MS.gene70499:CDS |
| ACTCCAGTAGGAATTGGAAT+TGG | 0.447205 | 3.1:-67007132 | MS.gene70499:CDS |
| AAACCAATTCCAATTCCTAC+TGG | 0.448336 | 3.1:+67007129 | None:intergenic |
| GAGTCTATCAATTACAATCA+TGG | 0.449026 | 3.1:-67007175 | MS.gene70499:CDS |
| CTTGTTTAAAGGAACATCCT+TGG | 0.468655 | 3.1:-67008178 | MS.gene70499:CDS |
| GTAAGATTCTCAAAAGCATC+AGG | 0.471092 | 3.1:+67008206 | None:intergenic |
| ATCAGAACTTCTTCGTCATA+GGG | 0.471833 | 3.1:-67007910 | MS.gene70499:CDS |
| ACAACCAGCTCCTAATAAAA+GGG | 0.495697 | 3.1:+67006930 | None:intergenic |
| ATCATTAAAACCTTTGCTGC+CGG | 0.497500 | 3.1:-67008263 | MS.gene70499:CDS |
| CTATTAGAGTCGGGAATATG+AGG | 0.501530 | 3.1:+67008456 | None:intergenic |
| AGGAAGCACATGAATGAAAC+CGG | 0.505115 | 3.1:+67008226 | None:intergenic |
| ACTTCTTGGCAAAGTGATAC+CGG | 0.514499 | 3.1:-67008315 | MS.gene70499:CDS |
| AGTCTATCAATTACAATCAT+GGG | 0.517712 | 3.1:-67007174 | MS.gene70499:CDS |
| CAGAGAGTCCTAAAACCATA+AGG | 0.533501 | 3.1:-67007658 | MS.gene70499:CDS |
| TCGTCATAGGGTCATATCAC+AGG | 0.536885 | 3.1:-67007898 | MS.gene70499:intron |
| TGACGAAGAAGTTCTGATGA+AGG | 0.540078 | 3.1:+67007915 | None:intergenic |
| ATAGCCACAAAACCTGTGAA+TGG | 0.549290 | 3.1:+67008146 | None:intergenic |
| CGCAGAATGCACGTGTGATG+AGG | 0.554438 | 3.1:-67008432 | MS.gene70499:CDS |
| GGTATCACTTTGCCAAGAAG+TGG | 0.555619 | 3.1:+67008317 | None:intergenic |
| TAATATCACACCGGCAGCAA+AGG | 0.560290 | 3.1:+67008253 | None:intergenic |
| GCCGGTGTGATATTATCCAC+CGG | 0.561788 | 3.1:-67008245 | MS.gene70499:CDS |
| CATTCTGCGGCTATTAGAGT+CGG | 0.562897 | 3.1:+67008446 | None:intergenic |
| CAAGGATGTTCCTTTAAACA+AGG | 0.576442 | 3.1:+67008179 | None:intergenic |
| AAGAAGTTCTGATGAAGGAT+CGG | 0.581698 | 3.1:+67007920 | None:intergenic |
| ACTTGGAAGTTGTATAACTC+AGG | 0.582307 | 3.1:-67007588 | MS.gene70499:intron |
| ATGAAGGATCGGAAGAAACA+TGG | 0.586911 | 3.1:+67007931 | None:intergenic |
| ATTCTGCGGCTATTAGAGTC+GGG | 0.588616 | 3.1:+67008447 | None:intergenic |
| GCATCCCATGGTCATGCACA+TGG | 0.588921 | 3.1:-67007954 | MS.gene70499:CDS |
| CTCATCACACGTGCATTCTG+CGG | 0.595994 | 3.1:+67008433 | None:intergenic |
| GGCAACCTTAGATGTGGAGA+AGG | 0.597643 | 3.1:-67008018 | MS.gene70499:CDS |
| TTTGCTTTGACTACTCCAGT+AGG | 0.602695 | 3.1:-67007144 | MS.gene70499:CDS |
| TGGCTATGTGCACTGCTATG+GGG | 0.605907 | 3.1:-67008130 | MS.gene70499:CDS |
| TGCACGTGTGATGAGGAAGA+TGG | 0.605995 | 3.1:-67008425 | MS.gene70499:CDS |
| GTTATAATAGGAATCTCTCT+CGG | 0.610596 | 3.1:-67007686 | MS.gene70499:CDS |
| TCATGAGGCAACCTTAGATG+TGG | 0.613366 | 3.1:-67008024 | MS.gene70499:CDS |
| AAGGGCATCAACGCTGACAC+AGG | 0.617183 | 3.1:-67008054 | MS.gene70499:CDS |
| GTTCATACTCATGCATCCCA+TGG | 0.618746 | 3.1:-67007966 | MS.gene70499:CDS |
| CATGGCCATGTGCATGACCA+TGG | 0.622464 | 3.1:+67007949 | None:intergenic |
| GTATCACTTTGCCAAGAAGT+GGG | 0.638859 | 3.1:+67008318 | None:intergenic |
| ATGGCCATGTGCATGACCAT+GGG | 0.642171 | 3.1:+67007950 | None:intergenic |
| ATAACGATTCTGAAAATAAG+CGG | 0.644739 | 3.1:+67008082 | None:intergenic |
| TGTTTAAAGGAACATCCTTG+GGG | 0.649652 | 3.1:-67008176 | MS.gene70499:CDS |
| AATCCAAGGATGCAAAAGAG+TGG | 0.658857 | 3.1:-67006979 | MS.gene70499:CDS |
| AAGGAAGCTGTAGAGCAACA+AGG | 0.660104 | 3.1:-67007999 | MS.gene70499:CDS |
| ACGATTCTGAAAATAAGCGG+TGG | 0.666807 | 3.1:+67008085 | None:intergenic |
| GTGAATGGAAAATCACCCCA+AGG | 0.672947 | 3.1:+67008161 | None:intergenic |
| AAGGTCAATGCAGCTACAAG+CGG | 0.676887 | 3.1:+67007635 | None:intergenic |
| ACCGGTGGATAATATCACAC+CGG | 0.694959 | 3.1:+67008244 | None:intergenic |
| AAGCACATGAATGAAACCGG+TGG | 0.696675 | 3.1:+67008229 | None:intergenic |
| GACACAGGTTAAGAGTCATG+AGG | 0.716963 | 3.1:-67008039 | MS.gene70499:CDS |
| AGATTCCTATTATAACAGAG+TGG | 0.719648 | 3.1:+67007693 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATTTATGAGTGTAAAT+GGG | - | chr3.1:67007904-67007923 | MS.gene70499:CDS | 15.0% |
| !!! | ATGAAAAATATATCTTTTTC+AGG | + | chr3.1:67007128-67007147 | None:intergenic | 15.0% |
| !!! | TATTGTTTTGATTTCATTAT+AGG | - | chr3.1:67007671-67007690 | MS.gene70499:CDS | 15.0% |
| !!! | TATTTCATTTTATATGACTT+TGG | + | chr3.1:67008065-67008084 | None:intergenic | 15.0% |
| !!! | TGAAAAATATATCTTTTTCA+GGG | + | chr3.1:67007127-67007146 | None:intergenic | 15.0% |
| !!! | TGAACTTTTTTATTTATGTA+TGG | - | chr3.1:67008119-67008138 | MS.gene70499:CDS | 15.0% |
| !!! | TTCTTGTTTAAATTCAATTA+AGG | + | chr3.1:67008158-67008177 | None:intergenic | 15.0% |
| !! | AAATCATATTCCATAATTCA+TGG | + | chr3.1:67007870-67007889 | None:intergenic | 20.0% |
| !! | CTAATATTTATGAGTGTAAA+TGG | - | chr3.1:67007903-67007922 | MS.gene70499:CDS | 20.0% |
| !! | TTAAACAAGAAAACAATCAT+GGG | - | chr3.1:67008167-67008186 | MS.gene70499:CDS | 20.0% |
| !! | TTTAAACAAGAAAACAATCA+TGG | - | chr3.1:67008166-67008185 | MS.gene70499:CDS | 20.0% |
| ! | AGTCTATCAATTACAATCAT+GGG | - | chr3.1:67008235-67008254 | MS.gene70499:CDS | 25.0% |
| ! | ATATTCCATAATTCATGGAT+AGG | + | chr3.1:67007865-67007884 | None:intergenic | 25.0% |
| ! | CATAGCTATAGAAACTATAA+GGG | + | chr3.1:67007994-67008013 | None:intergenic | 25.0% |
| ! | TAATACCTATCCATGAATTA+TGG | - | chr3.1:67007857-67007876 | MS.gene70499:intron | 25.0% |
| ! | TTCAGAATCGTTATTCTAAA+AGG | - | chr3.1:67007336-67007355 | MS.gene70499:intron | 25.0% |
| !! | ATAACGATTCTGAAAATAAG+CGG | + | chr3.1:67007330-67007349 | None:intergenic | 25.0% |
| !! | TCAGAATCGTTATTCTAAAA+GGG | - | chr3.1:67007337-67007356 | MS.gene70499:intron | 25.0% |
| !! | TTTGATTTCATTATAGGTGT+TGG | - | chr3.1:67007677-67007696 | MS.gene70499:CDS | 25.0% |
| !!! | ACCTTTCATCAATTTTTTGA+GGG | - | chr3.1:67007792-67007811 | MS.gene70499:intron | 25.0% |
| AGATTCCTATTATAACAGAG+TGG | + | chr3.1:67007719-67007738 | None:intergenic | 30.0% | |
| AGCTGGTATCTTAATCTATA+TGG | - | chr3.1:67008375-67008394 | MS.gene70499:CDS | 30.0% | |
| ATAGAAACTATAAGGGAGTT+TGG | + | chr3.1:67007987-67008006 | None:intergenic | 30.0% | |
| ATGAAATGATACTATGAGTC+AGG | - | chr3.1:67007956-67007975 | MS.gene70499:CDS | 30.0% | |
| ATTGTCCACTCTGTTATAAT+AGG | - | chr3.1:67007711-67007730 | MS.gene70499:CDS | 30.0% | |
| GAGTCTATCAATTACAATCA+TGG | - | chr3.1:67008234-67008253 | MS.gene70499:CDS | 30.0% | |
| GCATAGCTATAGAAACTATA+AGG | + | chr3.1:67007995-67008014 | None:intergenic | 30.0% | |
| GTTATAATAGGAATCTCTCT+CGG | - | chr3.1:67007723-67007742 | MS.gene70499:intron | 30.0% | |
| GTTCAACTAACATAACTTCT+AGG | + | chr3.1:67008104-67008123 | None:intergenic | 30.0% | |
| TTGTTTAAAGGAACATCCTT+GGG | - | chr3.1:67007232-67007251 | MS.gene70499:intron | 30.0% | |
| ! | TAGGAATTGGAATTGGTTTA+GGG | - | chr3.1:67008284-67008303 | MS.gene70499:CDS | 30.0% |
| ! | TCTTACTTCACCTTGTTTAA+AGG | - | chr3.1:67007220-67007239 | MS.gene70499:intron | 30.0% |
| ! | TGCAATCTATCCCTTTTATT+AGG | - | chr3.1:67008469-67008488 | MS.gene70499:CDS | 30.0% |
| !!! | ATTTTAGTTGCAAGTGCAAT+TGG | - | chr3.1:67007059-67007078 | MS.gene70499:CDS | 30.0% |
| !!! | GACCTTTCATCAATTTTTTG+AGG | - | chr3.1:67007791-67007810 | MS.gene70499:intron | 30.0% |
| AAACCAATTCCAATTCCTAC+TGG | + | chr3.1:67008283-67008302 | None:intergenic | 35.0% | |
| AAGAGTGGTAAACTTCGATT+AGG | - | chr3.1:67008445-67008464 | MS.gene70499:CDS | 35.0% | |
| AATGGGACCATATGTTTGTT+TGG | - | chr3.1:67007921-67007940 | MS.gene70499:CDS | 35.0% | |
| ACAACCAGCTCCTAATAAAA+GGG | + | chr3.1:67008482-67008501 | None:intergenic | 35.0% | |
| ACACCAACCAAACAAACATA+TGG | + | chr3.1:67007931-67007950 | None:intergenic | 35.0% | |
| ACTTGGAAGTTGTATAACTC+AGG | - | chr3.1:67007821-67007840 | MS.gene70499:intron | 35.0% | |
| ATCAGAACTTCTTCGTCATA+GGG | - | chr3.1:67007499-67007518 | MS.gene70499:intron | 35.0% | |
| ATCATTAAAACCTTTGCTGC+CGG | - | chr3.1:67007146-67007165 | MS.gene70499:CDS | 35.0% | |
| CAAGGATGTTCCTTTAAACA+AGG | + | chr3.1:67007233-67007252 | None:intergenic | 35.0% | |
| CTTGTTTAAAGGAACATCCT+TGG | - | chr3.1:67007231-67007250 | MS.gene70499:intron | 35.0% | |
| GCCCTCAAAAAATTGATGAA+AGG | + | chr3.1:67007796-67007815 | None:intergenic | 35.0% | |
| TACAACCAGCTCCTAATAAA+AGG | + | chr3.1:67008483-67008502 | None:intergenic | 35.0% | |
| TAGCTATGCTAATACTCATG+AGG | - | chr3.1:67008006-67008025 | MS.gene70499:CDS | 35.0% | |
| TATGTCTCTTCTAGCCAAAT+GGG | - | chr3.1:67008501-67008520 | MS.gene70499:CDS | 35.0% | |
| TGTTTAAAGGAACATCCTTG+GGG | - | chr3.1:67007233-67007252 | MS.gene70499:intron | 35.0% | |
| ! | AAGAAGTTCTGATGAAGGAT+CGG | + | chr3.1:67007492-67007511 | None:intergenic | 35.0% |
| ! | GTAGGAATTGGAATTGGTTT+AGG | - | chr3.1:67008283-67008302 | MS.gene70499:CDS | 35.0% |
| ! | TATTTTGTAACGTAGGGCTT+TGG | + | chr3.1:67007024-67007043 | None:intergenic | 35.0% |
| ! | TTTTCCATTCACAGGTTTTG+TGG | - | chr3.1:67007259-67007278 | MS.gene70499:intron | 35.0% |
| !! | CAGCTGATTTTATGAATCCA+AGG | - | chr3.1:67008416-67008435 | MS.gene70499:CDS | 35.0% |
| !! | CATTATAGGTGTTGGAGTTA+GGG | - | chr3.1:67007685-67007704 | MS.gene70499:CDS | 35.0% |
| !! | GTAAGATTCTCAAAAGCATC+AGG | + | chr3.1:67007206-67007225 | None:intergenic | 35.0% |
| !! | TCATTATAGGTGTTGGAGTT+AGG | - | chr3.1:67007684-67007703 | MS.gene70499:CDS | 35.0% |
| !!! | AAGCTGCTATTTTGTAACGT+AGG | + | chr3.1:67007031-67007050 | None:intergenic | 35.0% |
| !!! | AGCTGCTATTTTGTAACGTA+GGG | + | chr3.1:67007030-67007049 | None:intergenic | 35.0% |
| !!! | CATCAATTTTTTGAGGGCAT+GGG | - | chr3.1:67007798-67007817 | MS.gene70499:intron | 35.0% |
| !!! | TCATCAATTTTTTGAGGGCA+TGG | - | chr3.1:67007797-67007816 | MS.gene70499:intron | 35.0% |
| AATCCAAGGATGCAAAAGAG+TGG | - | chr3.1:67008430-67008449 | MS.gene70499:CDS | 40.0% | |
| ACTCCAGTAGGAATTGGAAT+TGG | - | chr3.1:67008277-67008296 | MS.gene70499:CDS | 40.0% | |
| ACTTCTTGGCAAAGTGATAC+CGG | - | chr3.1:67007094-67007113 | MS.gene70499:CDS | 40.0% | |
| ATAGCCACAAAACCTGTGAA+TGG | + | chr3.1:67007266-67007285 | None:intergenic | 40.0% | |
| ATCTTTAATGCAGCTTCAGC+TGG | - | chr3.1:67008358-67008377 | MS.gene70499:CDS | 40.0% | |
| ATGAAGGATCGGAAGAAACA+TGG | + | chr3.1:67007481-67007500 | None:intergenic | 40.0% | |
| CAGAGAGTCCTAAAACCATA+AGG | - | chr3.1:67007751-67007770 | MS.gene70499:intron | 40.0% | |
| CATCAGAACTTCTTCGTCAT+AGG | - | chr3.1:67007498-67007517 | MS.gene70499:intron | 40.0% | |
| CCAAACGCACTTATTGTTGA+AGG | - | chr3.1:67008334-67008353 | MS.gene70499:CDS | 40.0% | |
| CCTTCAACAATAAGTGCGTT+TGG | + | chr3.1:67008337-67008356 | None:intergenic | 40.0% | |
| CTATTAGAGTCGGGAATATG+AGG | + | chr3.1:67006956-67006975 | None:intergenic | 40.0% | |
| CTCTTGAAATTTGCCTGCAA+TGG | + | chr3.1:67008217-67008236 | None:intergenic | 40.0% | |
| GGACCATATGTTTGTTTGGT+TGG | - | chr3.1:67007925-67007944 | MS.gene70499:CDS | 40.0% | |
| GTATCACTTTGCCAAGAAGT+GGG | + | chr3.1:67007094-67007113 | None:intergenic | 40.0% | |
| GTATGTCTCTTCTAGCCAAA+TGG | - | chr3.1:67008500-67008519 | MS.gene70499:CDS | 40.0% | |
| TTGACTACTCCAGTAGGAAT+TGG | - | chr3.1:67008271-67008290 | MS.gene70499:CDS | 40.0% | |
| TTTGCTTTGACTACTCCAGT+AGG | - | chr3.1:67008265-67008284 | MS.gene70499:CDS | 40.0% | |
| ! | ACGATTCTGAAAATAAGCGG+TGG | + | chr3.1:67007327-67007346 | None:intergenic | 40.0% |
| ! | AGGAAGCACATGAATGAAAC+CGG | + | chr3.1:67007186-67007205 | None:intergenic | 40.0% |
| ! | ATTGAAAGTGCAACCATTGC+AGG | - | chr3.1:67008201-67008220 | MS.gene70499:CDS | 40.0% |
| ! | CTATCCCTTTTATTAGGAGC+TGG | - | chr3.1:67008475-67008494 | MS.gene70499:CDS | 40.0% |
| ! | TGACGAAGAAGTTCTGATGA+AGG | + | chr3.1:67007497-67007516 | None:intergenic | 40.0% |
| ! | TTACCACTCTTTTGCATCCT+TGG | + | chr3.1:67008436-67008455 | None:intergenic | 40.0% |
| AAGCACATGAATGAAACCGG+TGG | + | chr3.1:67007183-67007202 | None:intergenic | 45.0% | |
| AAGGAAGCTGTAGAGCAACA+AGG | - | chr3.1:67007410-67007429 | MS.gene70499:intron | 45.0% | |
| AAGGTCAATGCAGCTACAAG+CGG | + | chr3.1:67007777-67007796 | None:intergenic | 45.0% | |
| ACCGGTGGATAATATCACAC+CGG | + | chr3.1:67007168-67007187 | None:intergenic | 45.0% | |
| AGCTTCCTTCTCCACATCTA+AGG | + | chr3.1:67007399-67007418 | None:intergenic | 45.0% | |
| ATTCTGCGGCTATTAGAGTC+GGG | + | chr3.1:67006965-67006984 | None:intergenic | 45.0% | |
| CATTCTGCGGCTATTAGAGT+CGG | + | chr3.1:67006966-67006985 | None:intergenic | 45.0% | |
| GACACAGGTTAAGAGTCATG+AGG | - | chr3.1:67007370-67007389 | MS.gene70499:intron | 45.0% | |
| GGTATCACTTTGCCAAGAAG+TGG | + | chr3.1:67007095-67007114 | None:intergenic | 45.0% | |
| GGTGTTTGTATCCCACTTCT+TGG | - | chr3.1:67007080-67007099 | MS.gene70499:CDS | 45.0% | |
| GTGAATGGAAAATCACCCCA+AGG | + | chr3.1:67007251-67007270 | None:intergenic | 45.0% | |
| GTTCATACTCATGCATCCCA+TGG | - | chr3.1:67007443-67007462 | MS.gene70499:intron | 45.0% | |
| TAATATCACACCGGCAGCAA+AGG | + | chr3.1:67007159-67007178 | None:intergenic | 45.0% | |
| TCATGAGGCAACCTTAGATG+TGG | - | chr3.1:67007385-67007404 | MS.gene70499:intron | 45.0% | |
| TCGTCATAGGGTCATATCAC+AGG | - | chr3.1:67007511-67007530 | MS.gene70499:intron | 45.0% | |
| ! | TGGGGTGATTTTCCATTCAC+AGG | - | chr3.1:67007251-67007270 | MS.gene70499:intron | 45.0% |
| !! | ACAAGCGGCCTTATGGTTTT+AGG | + | chr3.1:67007762-67007781 | None:intergenic | 45.0% |
| !!! | TCTTTTTCAGGGCTTAACGC+CGG | + | chr3.1:67007116-67007135 | None:intergenic | 45.0% |
| !!! | TTTTTTGAGGGCATGGGACT+TGG | - | chr3.1:67007804-67007823 | MS.gene70499:intron | 45.0% |
| !!! | AATATGATTTAATTTTTATA+AGG | - | chr3.1:67007880-67007899 | MS.gene70499:intron | 5.0% |
| ATGGCCATGTGCATGACCAT+GGG | + | chr3.1:67007462-67007481 | None:intergenic | 50.0% | |
| CTCATCACACGTGCATTCTG+CGG | + | chr3.1:67006979-67006998 | None:intergenic | 50.0% | |
| GCCGGTGTGATATTATCCAC+CGG | - | chr3.1:67007164-67007183 | MS.gene70499:CDS | 50.0% | |
| GGCAACCTTAGATGTGGAGA+AGG | - | chr3.1:67007391-67007410 | MS.gene70499:intron | 50.0% | |
| GTGGCTATGTGCACTGCTAT+GGG | - | chr3.1:67007278-67007297 | MS.gene70499:intron | 50.0% | |
| TGCACGTGTGATGAGGAAGA+TGG | - | chr3.1:67006984-67007003 | MS.gene70499:CDS | 50.0% | |
| TGGCTATGTGCACTGCTATG+GGG | - | chr3.1:67007279-67007298 | MS.gene70499:intron | 50.0% | |
| TGTGGCTATGTGCACTGCTA+TGG | - | chr3.1:67007277-67007296 | MS.gene70499:intron | 50.0% | |
| CACTGCTATGGGGTCTCTCA+TGG | - | chr3.1:67007289-67007308 | MS.gene70499:intron | 55.0% | |
| CATGGCCATGTGCATGACCA+TGG | + | chr3.1:67007463-67007482 | None:intergenic | 55.0% | |
| CGCAGAATGCACGTGTGATG+AGG | - | chr3.1:67006977-67006996 | MS.gene70499:CDS | 55.0% | |
| GCATCCCATGGTCATGCACA+TGG | - | chr3.1:67007455-67007474 | MS.gene70499:intron | 55.0% | |
| TGCAGCTACAAGCGGCCTTA+TGG | + | chr3.1:67007769-67007788 | None:intergenic | 55.0% | |
| !! | AAGGGCATCAACGCTGACAC+AGG | - | chr3.1:67007355-67007374 | MS.gene70499:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 67006903 | 67008528 | 67006903 | ID=MS.gene70499 |
| chr3.1 | mRNA | 67006903 | 67008528 | 67006903 | ID=MS.gene70499.t1;Parent=MS.gene70499 |
| chr3.1 | exon | 67007899 | 67008528 | 67007899 | ID=MS.gene70499.t1.exon1;Parent=MS.gene70499.t1 |
| chr3.1 | CDS | 67007899 | 67008528 | 67007899 | ID=cds.MS.gene70499.t1;Parent=MS.gene70499.t1 |
| chr3.1 | exon | 67007589 | 67007738 | 67007589 | ID=MS.gene70499.t1.exon2;Parent=MS.gene70499.t1 |
| chr3.1 | CDS | 67007589 | 67007738 | 67007589 | ID=cds.MS.gene70499.t1;Parent=MS.gene70499.t1 |
| chr3.1 | exon | 67006903 | 67007208 | 67006903 | ID=MS.gene70499.t1.exon3;Parent=MS.gene70499.t1 |
| chr3.1 | CDS | 67006903 | 67007208 | 67006903 | ID=cds.MS.gene70499.t1;Parent=MS.gene70499.t1 |
| Gene Sequence |
| Protein sequence |
