Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70500.t1 | XP_013461166.1 | 95.8 | 358 | 15 | 0 | 1 | 358 | 1 | 358 | 2.30E-176 | 628.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70500.t1 | Q6L8G0 | 54.9 | 357 | 144 | 4 | 8 | 358 | 8 | 353 | 2.3e-97 | 357.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70500.t1 | B7FI47 | 95.8 | 358 | 15 | 0 | 1 | 358 | 1 | 358 | 1.6e-176 | 628.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009810 | MS.gene70500 | PPI |
| MS.gene038972 | MS.gene70500 | PPI |
| MS.gene50197 | MS.gene70500 | PPI |
| MS.gene62494 | MS.gene70500 | PPI |
| MS.gene70500 | MS.gene54167 | PPI |
| MS.gene045723 | MS.gene70500 | PPI |
| MS.gene70500 | MS.gene56999 | PPI |
| MS.gene066193 | MS.gene70500 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70500.t1 | MTR_3g081580 | 96.369 | 358 | 13 | 0 | 1 | 358 | 1 | 358 | 0.0 | 700 |
| MS.gene70500.t1 | MTR_3g081640 | 86.264 | 364 | 41 | 4 | 1 | 358 | 1 | 361 | 0.0 | 607 |
| MS.gene70500.t1 | MTR_3g082050 | 84.123 | 359 | 46 | 3 | 1 | 358 | 1 | 349 | 0.0 | 571 |
| MS.gene70500.t1 | MTR_3g082050 | 85.630 | 341 | 42 | 2 | 19 | 358 | 43 | 377 | 0.0 | 560 |
| MS.gene70500.t1 | MTR_3g082050 | 84.393 | 346 | 46 | 3 | 14 | 358 | 34 | 372 | 0.0 | 553 |
| MS.gene70500.t1 | MTR_3g081690 | 83.235 | 340 | 46 | 3 | 1 | 339 | 1 | 330 | 0.0 | 534 |
| MS.gene70500.t1 | MTR_3g081690 | 83.486 | 327 | 46 | 3 | 14 | 339 | 34 | 353 | 0.0 | 515 |
| MS.gene70500.t1 | MTR_2g064310 | 59.544 | 351 | 126 | 5 | 16 | 358 | 16 | 358 | 1.73e-139 | 400 |
| MS.gene70500.t1 | MTR_3g081690 | 79.186 | 221 | 39 | 2 | 120 | 339 | 25 | 239 | 4.23e-115 | 334 |
| MS.gene70500.t1 | MTR_4g083570 | 49.713 | 348 | 164 | 4 | 11 | 358 | 14 | 350 | 1.84e-111 | 329 |
| MS.gene70500.t1 | MTR_6g007687 | 50.435 | 345 | 153 | 4 | 15 | 355 | 14 | 344 | 5.46e-111 | 328 |
| MS.gene70500.t1 | MTR_8g105030 | 49.435 | 354 | 161 | 5 | 6 | 352 | 5 | 347 | 9.32e-111 | 328 |
| MS.gene70500.t1 | MTR_3g104400 | 46.961 | 362 | 159 | 4 | 28 | 358 | 6 | 365 | 4.07e-100 | 300 |
| MS.gene70500.t1 | MTR_3g081690 | 78.974 | 195 | 34 | 2 | 146 | 339 | 7 | 195 | 1.18e-98 | 291 |
| MS.gene70500.t1 | MTR_3g081690 | 79.487 | 195 | 33 | 2 | 146 | 339 | 29 | 217 | 1.96e-98 | 291 |
| MS.gene70500.t1 | MTR_1g016120 | 46.556 | 363 | 164 | 5 | 26 | 358 | 12 | 374 | 2.56e-96 | 291 |
| MS.gene70500.t1 | MTR_5g071990 | 41.691 | 343 | 167 | 8 | 24 | 358 | 1 | 318 | 3.12e-76 | 238 |
| MS.gene70500.t1 | MTR_3g081630 | 43.307 | 127 | 25 | 4 | 77 | 194 | 20 | 108 | 6.67e-21 | 87.8 |
| MS.gene70500.t1 | MTR_4g006710 | 45.455 | 88 | 47 | 1 | 37 | 124 | 26 | 112 | 6.29e-16 | 73.6 |
| MS.gene70500.t1 | MTR_3g073950 | 29.861 | 144 | 48 | 3 | 4 | 147 | 2 | 92 | 7.52e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70500.t1 | AT3G12750 | 53.203 | 359 | 155 | 4 | 3 | 358 | 7 | 355 | 1.12e-131 | 380 |
| MS.gene70500.t1 | AT1G05300 | 57.440 | 336 | 136 | 5 | 26 | 358 | 29 | 360 | 1.47e-130 | 378 |
| MS.gene70500.t1 | AT2G32270 | 53.005 | 366 | 137 | 4 | 1 | 358 | 1 | 339 | 1.05e-123 | 360 |
| MS.gene70500.t1 | AT1G31260 | 51.190 | 336 | 156 | 3 | 27 | 358 | 33 | 364 | 5.74e-115 | 338 |
| MS.gene70500.t1 | AT5G62160 | 49.716 | 352 | 166 | 5 | 10 | 358 | 12 | 355 | 3.12e-108 | 321 |
| MS.gene70500.t1 | AT2G04032 | 47.006 | 334 | 167 | 3 | 30 | 358 | 37 | 365 | 2.98e-101 | 303 |
| MS.gene70500.t1 | AT4G19690 | 47.309 | 353 | 164 | 4 | 11 | 358 | 12 | 347 | 3.39e-101 | 303 |
| MS.gene70500.t1 | AT4G19680 | 45.326 | 353 | 181 | 5 | 9 | 358 | 7 | 350 | 5.90e-97 | 292 |
| MS.gene70500.t1 | AT1G10970 | 45.135 | 370 | 159 | 5 | 28 | 358 | 10 | 374 | 7.12e-96 | 290 |
| MS.gene70500.t1 | AT1G10970 | 45.135 | 370 | 159 | 5 | 28 | 358 | 10 | 374 | 7.12e-96 | 290 |
| MS.gene70500.t1 | AT1G60960 | 42.065 | 397 | 176 | 6 | 16 | 358 | 19 | 415 | 4.27e-93 | 284 |
| MS.gene70500.t1 | AT1G60960 | 41.220 | 410 | 187 | 6 | 3 | 358 | 16 | 425 | 4.29e-93 | 285 |
| MS.gene70500.t1 | AT4G33020 | 41.622 | 370 | 173 | 5 | 29 | 358 | 25 | 391 | 6.18e-87 | 268 |
| MS.gene70500.t1 | AT4G33020 | 41.210 | 347 | 163 | 4 | 50 | 358 | 1 | 344 | 3.61e-80 | 249 |
| MS.gene70500.t1 | AT1G05300 | 53.112 | 241 | 106 | 5 | 26 | 263 | 29 | 265 | 4.93e-77 | 238 |
| MS.gene70500.t1 | AT2G30080 | 42.560 | 336 | 167 | 8 | 37 | 358 | 18 | 341 | 1.46e-76 | 239 |
| MS.gene70500.t1 | AT4G19680 | 42.126 | 254 | 135 | 5 | 9 | 259 | 7 | 251 | 2.07e-58 | 190 |
| MS.gene70500.t1 | AT4G19690 | 45.455 | 143 | 73 | 2 | 11 | 148 | 12 | 154 | 3.69e-33 | 123 |
| MS.gene70500.t1 | AT1G60960 | 44.595 | 148 | 77 | 1 | 16 | 158 | 29 | 176 | 1.81e-31 | 120 |
Find 87 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAAACCATTATTCTAAA+AGG | 0.128438 | 3.1:-67014579 | MS.gene70500:CDS |
| CTTTGCTGCTGGTGTGATTT+TGG | 0.132983 | 3.1:-67014758 | MS.gene70500:CDS |
| GAGTCTATCAATTACAATTA+TGG | 0.222804 | 3.1:-67012805 | MS.gene70500:CDS |
| CCATATGTCTTCTGTTTCTT+CGG | 0.263664 | 3.1:-67014455 | MS.gene70500:CDS |
| GGTGTTTGTATTCCACTTCT+AGG | 0.290466 | 3.1:-67014835 | MS.gene70500:CDS |
| GTCTGGGATCTTAATCTATA+TGG | 0.302604 | 3.1:-67012664 | MS.gene70500:CDS |
| TGCAGCTACCAATGGCCTTA+TGG | 0.311481 | 3.1:+67013974 | None:intergenic |
| ATTGTTCACTCCGTTATAAT+AGG | 0.317071 | 3.1:-67014029 | MS.gene70500:CDS |
| AGTCTATCAATTACAATTAT+GGG | 0.317862 | 3.1:-67012804 | MS.gene70500:CDS |
| CATATGTCTTCTGTTTCTTC+GGG | 0.345408 | 3.1:-67014454 | MS.gene70500:CDS |
| TTGTTTAAACGAACATCCTT+GGG | 0.345556 | 3.1:-67014683 | MS.gene70500:CDS |
| CACCGCTATGGGGACTCTTA+TGG | 0.349455 | 3.1:-67014626 | MS.gene70500:CDS |
| TGCAATATATCTCTTCTATT+AGG | 0.359071 | 3.1:-67012570 | MS.gene70500:CDS |
| TCATGATCCTTCTCCACATC+TGG | 0.377311 | 3.1:+67014526 | None:intergenic |
| TTCTTTGAAGGCATGGGACT+TGG | 0.380444 | 3.1:-67013936 | MS.gene70500:CDS |
| TTCTAAAAGGGCACCGGCAC+AGG | 0.381340 | 3.1:-67014566 | MS.gene70500:CDS |
| CTATTAAAGTCGGGATTATA+AGG | 0.382734 | 3.1:+67014962 | None:intergenic |
| TTCATAATAGGTATTAGAGT+TGG | 0.383535 | 3.1:-67014057 | MS.gene70500:intron |
| CGTTATAATAGGAATTTCTC+TGG | 0.388253 | 3.1:-67014018 | MS.gene70500:CDS |
| ATATTCAATGCAGCATCGTC+TGG | 0.398905 | 3.1:-67012681 | MS.gene70500:CDS |
| ATCATCAAAGCCTTTGCTGC+TGG | 0.402978 | 3.1:-67014769 | MS.gene70500:CDS |
| TCATAATAGGTATTAGAGTT+GGG | 0.404865 | 3.1:-67014056 | MS.gene70500:intron |
| TGAATATTCCCTCAACGATA+AGG | 0.414646 | 3.1:+67012697 | None:intergenic |
| CTTGTTTAAACGAACATCCT+TGG | 0.415244 | 3.1:-67014684 | MS.gene70500:CDS |
| TTATGTCTCTTATAGCCAAA+TGG | 0.421117 | 3.1:-67012539 | MS.gene70500:CDS |
| TCAAAACCATTATTCTAAAA+GGG | 0.424815 | 3.1:-67014578 | MS.gene70500:CDS |
| CATCATTGGATTCATAAAAT+CGG | 0.426439 | 3.1:+67012620 | None:intergenic |
| CCGAAGAAACAGAAGACATA+TGG | 0.436351 | 3.1:+67014455 | None:intergenic |
| TATAAACATCTAAGCCCATT+TGG | 0.452842 | 3.1:+67012524 | None:intergenic |
| CATCAGTTCTTTGAAGGCAT+GGG | 0.453138 | 3.1:-67013942 | MS.gene70500:CDS |
| TATGTCTCTTATAGCCAAAT+GGG | 0.456505 | 3.1:-67012538 | MS.gene70500:CDS |
| TCATCAGTTCTTTGAAGGCA+TGG | 0.458960 | 3.1:-67013943 | MS.gene70500:CDS |
| ATACTAGTTGCAAGTGCAAT+TGG | 0.459070 | 3.1:-67014856 | MS.gene70500:CDS |
| TATCTTATAGCGAAGAGCTT+TGG | 0.461754 | 3.1:+67014894 | None:intergenic |
| ATATCTCTTCTATTAGGATC+TGG | 0.463707 | 3.1:-67012564 | MS.gene70500:CDS |
| ATGCCAATTGCAATTCCTAC+TGG | 0.465762 | 3.1:+67012759 | None:intergenic |
| GTAAGATTCTCAAAAGCATC+AGG | 0.471092 | 3.1:+67014712 | None:intergenic |
| GTGGCTATGTGCACCGCTAT+GGG | 0.473126 | 3.1:-67014637 | MS.gene70500:CDS |
| GAATATTCCCTCAACGATAA+GGG | 0.474152 | 3.1:+67012698 | None:intergenic |
| CAACAGAACTTCTTCGCCAT+AGG | 0.493431 | 3.1:-67014426 | MS.gene70500:CDS |
| AAGAGTGGTAGACTTCGATT+AGG | 0.493822 | 3.1:-67012594 | MS.gene70500:CDS |
| CGAAGAAACAGAAGACATAT+GGG | 0.494314 | 3.1:+67014456 | None:intergenic |
| TGTGGCTATGTGCACCGCTA+TGG | 0.496742 | 3.1:-67014638 | MS.gene70500:CDS |
| CCAACTGCCCTTATCGTTGA+GGG | 0.499607 | 3.1:-67012705 | MS.gene70500:CDS |
| AGTGATACCGGCGTTAAGCC+CGG | 0.503669 | 3.1:-67014809 | MS.gene70500:CDS |
| AGGAAGCACATGAATGAAAC+CGG | 0.505115 | 3.1:+67014732 | None:intergenic |
| CAGAGAAATTCCTATTATAA+CGG | 0.509686 | 3.1:+67014019 | None:intergenic |
| ATACCTGTGTTATGACCCTA+TGG | 0.512934 | 3.1:+67014410 | None:intergenic |
| ACTTCTAGGCAAAGTGATAC+CGG | 0.520170 | 3.1:-67014821 | MS.gene70500:CDS |
| TCCTAAAACCATAAGGCCAT+TGG | 0.522500 | 3.1:-67013982 | MS.gene70500:CDS |
| GTAGGAATTGCAATTGGCAT+AGG | 0.527061 | 3.1:-67012756 | MS.gene70500:CDS |
| CATTCTGCGGCTATTAAAGT+CGG | 0.528859 | 3.1:+67014952 | None:intergenic |
| ACCTCACTCTCAACCTGTGC+CGG | 0.532275 | 3.1:+67014553 | None:intergenic |
| CAGAGAGTCCTAAAACCATA+AGG | 0.533501 | 3.1:-67013989 | MS.gene70500:CDS |
| AACAGAACTTCTTCGCCATA+GGG | 0.534397 | 3.1:-67014425 | MS.gene70500:CDS |
| ACTCCAGTAGGAATTGCAAT+TGG | 0.549229 | 3.1:-67012762 | MS.gene70500:CDS |
| TGGCGAAGAAGTTCTGTTGA+CGG | 0.549845 | 3.1:+67014430 | None:intergenic |
| ATAGCCACAAAACCAGTGAA+TGG | 0.552941 | 3.1:+67014652 | None:intergenic |
| CAAAATCACACCAGCAGCAA+AGG | 0.556559 | 3.1:+67014759 | None:intergenic |
| TAGGAATTGCAATTGGCATA+GGG | 0.557383 | 3.1:-67012755 | MS.gene70500:CDS |
| ATTCTGCGGCTATTAAAGTC+GGG | 0.557508 | 3.1:+67014953 | None:intergenic |
| CCCTCAACGATAAGGGCAGT+TGG | 0.563857 | 3.1:+67012705 | None:intergenic |
| GGTATCACTTTGCCTAGAAG+TGG | 0.576674 | 3.1:+67014823 | None:intergenic |
| TGGCTATGTGCACCGCTATG+GGG | 0.578981 | 3.1:-67014636 | MS.gene70500:CDS |
| TATTCAATGCAGCATCGTCT+GGG | 0.579696 | 3.1:-67012680 | MS.gene70500:CDS |
| TTCATCACATGTGCATTCTG+CGG | 0.582209 | 3.1:+67014939 | None:intergenic |
| CAAGGATGTTCGTTTAAACA+AGG | 0.589706 | 3.1:+67014685 | None:intergenic |
| TTTGCTTTGACTACTCCAGT+AGG | 0.595259 | 3.1:-67012774 | MS.gene70500:CDS |
| GTTATAATAGGAATTTCTCT+GGG | 0.595731 | 3.1:-67014017 | MS.gene70500:CDS |
| TCCAACTGCCCTTATCGTTG+AGG | 0.597562 | 3.1:-67012706 | MS.gene70500:CDS |
| CCATTATTCTAAAAGGGCAC+CGG | 0.600771 | 3.1:-67014572 | MS.gene70500:CDS |
| TGCACATGTGATGAAGAAGA+TGG | 0.608430 | 3.1:-67014931 | MS.gene70500:CDS |
| ACCGGCACAGGTTGAGAGTG+AGG | 0.614701 | 3.1:-67014554 | MS.gene70500:CDS |
| AAAGTCAATGCAGCTACCAA+TGG | 0.625999 | 3.1:+67013966 | None:intergenic |
| GGTAACACCAGATGTGGAGA+AGG | 0.630798 | 3.1:-67014533 | MS.gene70500:CDS |
| TGTTTAAACGAACATCCTTG+GGG | 0.632590 | 3.1:-67014682 | MS.gene70500:CDS |
| GAGTGAGGTAACACCAGATG+TGG | 0.643136 | 3.1:-67014539 | MS.gene70500:CDS |
| TCGCCATAGGGTCATAACAC+AGG | 0.643471 | 3.1:-67014413 | MS.gene70500:intron |
| ACTTGGAAGTTGTATAACAC+AGG | 0.657485 | 3.1:-67013919 | MS.gene70500:intron |
| AATCCAATGATGCAAAAGAG+TGG | 0.658857 | 3.1:-67012609 | MS.gene70500:CDS |
| GTTCATACTCATGCTTCACA+TGG | 0.660988 | 3.1:-67014490 | MS.gene70500:CDS |
| GTGAATGGAAAATCACCCCA+AGG | 0.670551 | 3.1:+67014667 | None:intergenic |
| GAAGGATCATGAAGGACACG+TGG | 0.676323 | 3.1:-67014515 | MS.gene70500:CDS |
| ATTGGCATAGGGATCAGTAG+TGG | 0.697771 | 3.1:-67012744 | MS.gene70500:CDS |
| GATGTGGAGAAGGATCATGA+AGG | 0.713520 | 3.1:-67014523 | MS.gene70500:CDS |
| GAAGAAACAGAAGACATATG+GGG | 0.732324 | 3.1:+67014457 | None:intergenic |
| AACCATAAGAGTCCCCATAG+CGG | 0.744809 | 3.1:+67014624 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATTTATTCAAAAGAA+GGG | + | chr3.1:67013254-67013273 | None:intergenic | 10.0% |
| !! | TTATATATTTATTCAAAAGA+AGG | + | chr3.1:67013255-67013274 | None:intergenic | 10.0% |
| !!! | AATTATTTTGATTTCATAAT+AGG | - | chr3.1:67013476-67013495 | MS.gene70500:intron | 10.0% |
| !! | AAAACATATATCAACATAAA+TGG | + | chr3.1:67013187-67013206 | None:intergenic | 15.0% |
| !!! | AATTTTTCTAATTTCAATCA+TGG | - | chr3.1:67014341-67014360 | MS.gene70500:intron | 15.0% |
| !!! | ATGAAAAATATATCTTTTTC+CGG | + | chr3.1:67012758-67012777 | None:intergenic | 15.0% |
| !!! | CATATTTCTTAATTTGTATT+GGG | - | chr3.1:67014265-67014284 | MS.gene70500:intron | 15.0% |
| !!! | TCATATTTCTTAATTTGTAT+TGG | - | chr3.1:67014264-67014283 | MS.gene70500:intron | 15.0% |
| !!! | TTCATATATTGATTGAAATA+CGG | - | chr3.1:67013432-67013451 | MS.gene70500:intron | 15.0% |
| !! | AAACTTCATTAAAAAAACCA+AGG | + | chr3.1:67013957-67013976 | None:intergenic | 20.0% |
| !! | AAATTCAAATTTCATGCAAA+AGG | + | chr3.1:67014326-67014345 | None:intergenic | 20.0% |
| !! | AAGAAAAACATATTAAAGAG+TGG | + | chr3.1:67014241-67014260 | None:intergenic | 20.0% |
| !! | AGTCTATCAATTACAATTAT+GGG | - | chr3.1:67014741-67014760 | MS.gene70500:CDS | 20.0% |
| !! | TAGAAAATAGTGATAGTAAA+TGG | + | chr3.1:67014485-67014504 | None:intergenic | 20.0% |
| !! | TATCTTTGAATAAACAATAG+TGG | + | chr3.1:67014166-67014185 | None:intergenic | 20.0% |
| !! | TATTTCCAATGCTATTAAAT+TGG | + | chr3.1:67014554-67014573 | None:intergenic | 20.0% |
| !! | TTCAAAACCATTATTCTAAA+AGG | - | chr3.1:67012966-67012985 | MS.gene70500:intron | 20.0% |
| !! | TTTAATGAAGTTTCAAATGT+AGG | - | chr3.1:67013964-67013983 | MS.gene70500:CDS | 20.0% |
| !!! | ATCTTTTGAACATATGATAT+AGG | + | chr3.1:67014135-67014154 | None:intergenic | 20.0% |
| !!! | TCAAAACCATTATTCTAAAA+GGG | - | chr3.1:67012967-67012986 | MS.gene70500:intron | 20.0% |
| !!! | TGAAAAATATATCTTTTTCC+GGG | + | chr3.1:67012757-67012776 | None:intergenic | 20.0% |
| ! | ACACAAACTATAGAAAAGAT+AGG | - | chr3.1:67013916-67013935 | MS.gene70500:intron | 25.0% |
| ! | CAGAGAAATTCCTATTATAA+CGG | + | chr3.1:67013529-67013548 | None:intergenic | 25.0% |
| ! | CATCATTGGATTCATAAAAT+CGG | + | chr3.1:67014928-67014947 | None:intergenic | 25.0% |
| ! | GAGTCTATCAATTACAATTA+TGG | - | chr3.1:67014740-67014759 | MS.gene70500:CDS | 25.0% |
| ! | GTTATAATAGGAATTTCTCT+GGG | - | chr3.1:67013528-67013547 | MS.gene70500:intron | 25.0% |
| ! | GTTTACCAATTTAATAGCAT+TGG | - | chr3.1:67014546-67014565 | MS.gene70500:CDS | 25.0% |
| ! | TAAGTCAGCAAACAATTATA+AGG | + | chr3.1:67014688-67014707 | None:intergenic | 25.0% |
| ! | TATGATATAGGAACAAACAA+TGG | + | chr3.1:67014123-67014142 | None:intergenic | 25.0% |
| ! | TCATAATAGGTATTAGAGTT+GGG | - | chr3.1:67013489-67013508 | MS.gene70500:intron | 25.0% |
| ! | TGCAATATATCTCTTCTATT+AGG | - | chr3.1:67014975-67014994 | MS.gene70500:CDS | 25.0% |
| ! | TTCATAATAGGTATTAGAGT+TGG | - | chr3.1:67013488-67013507 | MS.gene70500:intron | 25.0% |
| !! | ATATATTGATTGAAATACGG+TGG | - | chr3.1:67013435-67013454 | MS.gene70500:intron | 25.0% |
| !! | ATTTGATTTCTGATGAGATT+CGG | + | chr3.1:67014394-67014413 | None:intergenic | 25.0% |
| !! | GTGAACTTTTCAATAAACTT+GGG | - | chr3.1:67013991-67014010 | MS.gene70500:CDS | 25.0% |
| !! | TGTGAACTTTTCAATAAACT+TGG | - | chr3.1:67013990-67014009 | MS.gene70500:CDS | 25.0% |
| !!! | ATAATTGTTTGCTGACTTAT+TGG | - | chr3.1:67014689-67014708 | MS.gene70500:CDS | 25.0% |
| AATTGGTAAACCTTTAGTTG+TGG | + | chr3.1:67014537-67014556 | None:intergenic | 30.0% | |
| ATATCTCTTCTATTAGGATC+TGG | - | chr3.1:67014981-67015000 | MS.gene70500:CDS | 30.0% | |
| ATTGTTCACTCCGTTATAAT+AGG | - | chr3.1:67013516-67013535 | MS.gene70500:intron | 30.0% | |
| CATTGGAAATACTTGCAAAA+AGG | - | chr3.1:67014563-67014582 | MS.gene70500:CDS | 30.0% | |
| CGTTATAATAGGAATTTCTC+TGG | - | chr3.1:67013527-67013546 | MS.gene70500:intron | 30.0% | |
| CTAGTGTGAGTAATATTCAA+AGG | + | chr3.1:67014514-67014533 | None:intergenic | 30.0% | |
| CTATTAAAGTCGGGATTATA+AGG | + | chr3.1:67012586-67012605 | None:intergenic | 30.0% | |
| TATGTCTCTTATAGCCAAAT+GGG | - | chr3.1:67015007-67015026 | MS.gene70500:CDS | 30.0% | |
| TTATGTCTCTTATAGCCAAA+TGG | - | chr3.1:67015006-67015025 | MS.gene70500:CDS | 30.0% | |
| TTGTTTAAACGAACATCCTT+GGG | - | chr3.1:67012862-67012881 | MS.gene70500:intron | 30.0% | |
| ! | ACTTTTCATCAGTTCTTTGA+AGG | - | chr3.1:67013597-67013616 | MS.gene70500:intron | 30.0% |
| ! | GAATAAACAATAGTGGAGTT+TGG | + | chr3.1:67014159-67014178 | None:intergenic | 30.0% |
| !! | AAACTATTTCTGACTGTACA+TGG | - | chr3.1:67013776-67013795 | MS.gene70500:intron | 30.0% |
| !! | AACTATTTCTGACTGTACAT+GGG | - | chr3.1:67013777-67013796 | MS.gene70500:intron | 30.0% |
| !!! | ATGGTTTTGAAAATAAGCAG+TGG | + | chr3.1:67012957-67012976 | None:intergenic | 30.0% |
| !!! | GTTATGAGAACTCTTTTTTG+CGG | + | chr3.1:67014299-67014318 | None:intergenic | 30.0% |
| AATCCAATGATGCAAAAGAG+TGG | - | chr3.1:67014936-67014955 | MS.gene70500:CDS | 35.0% | |
| ACTTGGAAGTTGTATAACAC+AGG | - | chr3.1:67013626-67013645 | MS.gene70500:intron | 35.0% | |
| ATACTAGTTGCAAGTGCAAT+TGG | - | chr3.1:67012689-67012708 | MS.gene70500:CDS | 35.0% | |
| CAAGGATGTTCGTTTAAACA+AGG | + | chr3.1:67012863-67012882 | None:intergenic | 35.0% | |
| CGAAGAAACAGAAGACATAT+GGG | + | chr3.1:67013092-67013111 | None:intergenic | 35.0% | |
| CTTGTTTAAACGAACATCCT+TGG | - | chr3.1:67012861-67012880 | MS.gene70500:intron | 35.0% | |
| GAAGAAACAGAAGACATATG+GGG | + | chr3.1:67013091-67013110 | None:intergenic | 35.0% | |
| GAATATTCCCTCAACGATAA+GGG | + | chr3.1:67014850-67014869 | None:intergenic | 35.0% | |
| TAGGAATTGCAATTGGCATA+GGG | - | chr3.1:67014790-67014809 | MS.gene70500:CDS | 35.0% | |
| TATCTTATAGCGAAGAGCTT+TGG | + | chr3.1:67012654-67012673 | None:intergenic | 35.0% | |
| TGAATATTCCCTCAACGATA+AGG | + | chr3.1:67014851-67014870 | None:intergenic | 35.0% | |
| TGTTTAAACGAACATCCTTG+GGG | - | chr3.1:67012863-67012882 | MS.gene70500:intron | 35.0% | |
| TTGAGTGATATGCAAACACA+TGG | + | chr3.1:67013804-67013823 | None:intergenic | 35.0% | |
| ! | AAAGAGTGGTGCTAGAAAAA+GGG | + | chr3.1:67014227-67014246 | None:intergenic | 35.0% |
| ! | CATATGTCTTCTGTTTCTTC+GGG | - | chr3.1:67013091-67013110 | MS.gene70500:intron | 35.0% |
| ! | CCATATGTCTTCTGTTTCTT+CGG | - | chr3.1:67013090-67013109 | MS.gene70500:intron | 35.0% |
| ! | GGATAAGACTTTTCAAACCT+TGG | - | chr3.1:67013937-67013956 | MS.gene70500:CDS | 35.0% |
| ! | GTCTGGGATCTTAATCTATA+TGG | - | chr3.1:67014881-67014900 | MS.gene70500:CDS | 35.0% |
| ! | TAAAGAGTGGTGCTAGAAAA+AGG | + | chr3.1:67014228-67014247 | None:intergenic | 35.0% |
| ! | TGTGACCAATGCATTTTGTT+GGG | - | chr3.1:67014094-67014113 | MS.gene70500:intron | 35.0% |
| !! | GTAAGATTCTCAAAAGCATC+AGG | + | chr3.1:67012836-67012855 | None:intergenic | 35.0% |
| !!! | TTTTCCATTCACTGGTTTTG+TGG | - | chr3.1:67012889-67012908 | MS.gene70500:intron | 35.0% |
| AAAGTCAATGCAGCTACCAA+TGG | + | chr3.1:67013582-67013601 | None:intergenic | 40.0% | |
| AACAGAACTTCTTCGCCATA+GGG | - | chr3.1:67013120-67013139 | MS.gene70500:intron | 40.0% | |
| AAGAGTGGTAGACTTCGATT+AGG | - | chr3.1:67014951-67014970 | MS.gene70500:CDS | 40.0% | |
| ACTCCAGTAGGAATTGCAAT+TGG | - | chr3.1:67014783-67014802 | MS.gene70500:CDS | 40.0% | |
| ACTTCTAGGCAAAGTGATAC+CGG | - | chr3.1:67012724-67012743 | MS.gene70500:CDS | 40.0% | |
| ATACCTGTGTTATGACCCTA+TGG | + | chr3.1:67013138-67013157 | None:intergenic | 40.0% | |
| ATAGCCACAAAACCAGTGAA+TGG | + | chr3.1:67012896-67012915 | None:intergenic | 40.0% | |
| ATATTCAATGCAGCATCGTC+TGG | - | chr3.1:67014864-67014883 | MS.gene70500:CDS | 40.0% | |
| ATGCCAATTGCAATTCCTAC+TGG | + | chr3.1:67014789-67014808 | None:intergenic | 40.0% | |
| ATTCTGCGGCTATTAAAGTC+GGG | + | chr3.1:67012595-67012614 | None:intergenic | 40.0% | |
| ATTGGATGTGTGATCATTGC+AGG | - | chr3.1:67014707-67014726 | MS.gene70500:CDS | 40.0% | |
| CAACAACCAAACCAAACACA+TGG | + | chr3.1:67013892-67013911 | None:intergenic | 40.0% | |
| CAGAGAGTCCTAAAACCATA+AGG | - | chr3.1:67013556-67013575 | MS.gene70500:intron | 40.0% | |
| CATTCTGCGGCTATTAAAGT+CGG | + | chr3.1:67012596-67012615 | None:intergenic | 40.0% | |
| CCGAAGAAACAGAAGACATA+TGG | + | chr3.1:67013093-67013112 | None:intergenic | 40.0% | |
| GGAAACCCAACAAAATGCAT+TGG | + | chr3.1:67014102-67014121 | None:intergenic | 40.0% | |
| GGTGTTTGTATTCCACTTCT+AGG | - | chr3.1:67012710-67012729 | MS.gene70500:CDS | 40.0% | |
| GTAGGAATTGCAATTGGCAT+AGG | - | chr3.1:67014789-67014808 | MS.gene70500:CDS | 40.0% | |
| GTTCATACTCATGCTTCACA+TGG | - | chr3.1:67013055-67013074 | MS.gene70500:intron | 40.0% | |
| TATTCAATGCAGCATCGTCT+GGG | - | chr3.1:67014865-67014884 | MS.gene70500:CDS | 40.0% | |
| TCCTAAAACCATAAGGCCAT+TGG | - | chr3.1:67013563-67013582 | MS.gene70500:intron | 40.0% | |
| TGCACATGTGATGAAGAAGA+TGG | - | chr3.1:67012614-67012633 | MS.gene70500:CDS | 40.0% | |
| TTCATCACATGTGCATTCTG+CGG | + | chr3.1:67012609-67012628 | None:intergenic | 40.0% | |
| TTGGTCACACAAAGATTGAG+AGG | + | chr3.1:67014083-67014102 | None:intergenic | 40.0% | |
| TTTGCTTTGACTACTCCAGT+AGG | - | chr3.1:67014771-67014790 | MS.gene70500:CDS | 40.0% | |
| ! | AGGAAGCACATGAATGAAAC+CGG | + | chr3.1:67012816-67012835 | None:intergenic | 40.0% |
| ! | CATCAGTTCTTTGAAGGCAT+GGG | - | chr3.1:67013603-67013622 | MS.gene70500:intron | 40.0% |
| ! | CCATTATTCTAAAAGGGCAC+CGG | - | chr3.1:67012973-67012992 | MS.gene70500:intron | 40.0% |
| ! | CTACCACTCTTTTGCATCAT+TGG | + | chr3.1:67014942-67014961 | None:intergenic | 40.0% |
| ! | GTGTGACCAATGCATTTTGT+TGG | - | chr3.1:67014093-67014112 | MS.gene70500:intron | 40.0% |
| ! | TCATCAGTTCTTTGAAGGCA+TGG | - | chr3.1:67013602-67013621 | MS.gene70500:intron | 40.0% |
| ! | TTCTGATGAGATTCGGTTGA+AGG | + | chr3.1:67014387-67014406 | None:intergenic | 40.0% |
| !!! | ACCAATGGCCTTATGGTTTT+AGG | + | chr3.1:67013567-67013586 | None:intergenic | 40.0% |
| AACCATAAGAGTCCCCATAG+CGG | + | chr3.1:67012924-67012943 | None:intergenic | 45.0% | |
| ATCATCAAAGCCTTTGCTGC+TGG | - | chr3.1:67012776-67012795 | MS.gene70500:CDS | 45.0% | |
| ATTGGCATAGGGATCAGTAG+TGG | - | chr3.1:67014801-67014820 | MS.gene70500:CDS | 45.0% | |
| CAAAATCACACCAGCAGCAA+AGG | + | chr3.1:67012789-67012808 | None:intergenic | 45.0% | |
| CAACAGAACTTCTTCGCCAT+AGG | - | chr3.1:67013119-67013138 | MS.gene70500:intron | 45.0% | |
| CTCACACTAGCCACAACTAA+AGG | - | chr3.1:67014524-67014543 | MS.gene70500:CDS | 45.0% | |
| GATGTGGAGAAGGATCATGA+AGG | - | chr3.1:67013022-67013041 | MS.gene70500:intron | 45.0% | |
| GGTATCACTTTGCCTAGAAG+TGG | + | chr3.1:67012725-67012744 | None:intergenic | 45.0% | |
| GTGAATGGAAAATCACCCCA+AGG | + | chr3.1:67012881-67012900 | None:intergenic | 45.0% | |
| TCATGATCCTTCTCCACATC+TGG | + | chr3.1:67013022-67013041 | None:intergenic | 45.0% | |
| TGGCGAAGAAGTTCTGTTGA+CGG | + | chr3.1:67013118-67013137 | None:intergenic | 45.0% | |
| TTGGGACCATGTGTTTGGTT+TGG | - | chr3.1:67013883-67013902 | MS.gene70500:intron | 45.0% | |
| ! | CTTTGCTGCTGGTGTGATTT+TGG | - | chr3.1:67012787-67012806 | MS.gene70500:CDS | 45.0% |
| ! | TGGGGTGATTTTCCATTCAC+TGG | - | chr3.1:67012881-67012900 | MS.gene70500:intron | 45.0% |
| ! | TTCTTTGAAGGCATGGGACT+TGG | - | chr3.1:67013609-67013628 | MS.gene70500:intron | 45.0% |
| !!! | CCGGTGCCCTTTTAGAATAA+TGG | + | chr3.1:67012976-67012995 | None:intergenic | 45.0% |
| AACACATGGTCCCAAGCACA+TGG | + | chr3.1:67013878-67013897 | None:intergenic | 50.0% | |
| ACACATGGTCCCAAGCACAT+GGG | + | chr3.1:67013877-67013896 | None:intergenic | 50.0% | |
| CCAACTGCCCTTATCGTTGA+GGG | - | chr3.1:67014840-67014859 | MS.gene70500:CDS | 50.0% | |
| GAAGGATCATGAAGGACACG+TGG | - | chr3.1:67013030-67013049 | MS.gene70500:intron | 50.0% | |
| GAGTGAGGTAACACCAGATG+TGG | - | chr3.1:67013006-67013025 | MS.gene70500:intron | 50.0% | |
| GGTAACACCAGATGTGGAGA+AGG | - | chr3.1:67013012-67013031 | MS.gene70500:intron | 50.0% | |
| GTTCATGAGCCCATGTGCTT+GGG | - | chr3.1:67013865-67013884 | MS.gene70500:intron | 50.0% | |
| TCCAACTGCCCTTATCGTTG+AGG | - | chr3.1:67014839-67014858 | MS.gene70500:CDS | 50.0% | |
| TCGCCATAGGGTCATAACAC+AGG | - | chr3.1:67013132-67013151 | MS.gene70500:intron | 50.0% | |
| TGTGCTTGGGACCATGTGTT+TGG | - | chr3.1:67013878-67013897 | MS.gene70500:intron | 50.0% | |
| TGTTCATGAGCCCATGTGCT+TGG | - | chr3.1:67013864-67013883 | MS.gene70500:intron | 50.0% | |
| ! | TCTTTTTCCGGGCTTAACGC+CGG | + | chr3.1:67012746-67012765 | None:intergenic | 50.0% |
| ! | TGCAGCTACCAATGGCCTTA+TGG | + | chr3.1:67013574-67013593 | None:intergenic | 50.0% |
| !! | GCTGGTGTGATTTTGGCAAC+CGG | - | chr3.1:67012794-67012813 | MS.gene70500:CDS | 50.0% |
| ACCTCACTCTCAACCTGTGC+CGG | + | chr3.1:67012995-67013014 | None:intergenic | 55.0% | |
| AGTGATACCGGCGTTAAGCC+CGG | - | chr3.1:67012736-67012755 | MS.gene70500:CDS | 55.0% | |
| CACCGCTATGGGGACTCTTA+TGG | - | chr3.1:67012919-67012938 | MS.gene70500:intron | 55.0% | |
| CCCTCAACGATAAGGGCAGT+TGG | + | chr3.1:67014843-67014862 | None:intergenic | 55.0% | |
| GTGGCTATGTGCACCGCTAT+GGG | - | chr3.1:67012908-67012927 | MS.gene70500:intron | 55.0% | |
| TGGCTATGTGCACCGCTATG+GGG | - | chr3.1:67012909-67012928 | MS.gene70500:intron | 55.0% | |
| TGTGGCTATGTGCACCGCTA+TGG | - | chr3.1:67012907-67012926 | MS.gene70500:intron | 55.0% | |
| !! | TTCTAAAAGGGCACCGGCAC+AGG | - | chr3.1:67012979-67012998 | MS.gene70500:intron | 55.0% |
| ! | ACCGGCACAGGTTGAGAGTG+AGG | - | chr3.1:67012991-67013010 | MS.gene70500:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 67012533 | 67015034 | 67012533 | ID=MS.gene70500 |
| chr3.1 | mRNA | 67012533 | 67015034 | 67012533 | ID=MS.gene70500.t1;Parent=MS.gene70500 |
| chr3.1 | exon | 67014414 | 67015034 | 67014414 | ID=MS.gene70500.t1.exon1;Parent=MS.gene70500.t1 |
| chr3.1 | CDS | 67014414 | 67015034 | 67014414 | ID=cds.MS.gene70500.t1;Parent=MS.gene70500.t1 |
| chr3.1 | exon | 67013920 | 67014069 | 67013920 | ID=MS.gene70500.t1.exon2;Parent=MS.gene70500.t1 |
| chr3.1 | CDS | 67013920 | 67014069 | 67013920 | ID=cds.MS.gene70500.t1;Parent=MS.gene70500.t1 |
| chr3.1 | exon | 67012533 | 67012838 | 67012533 | ID=MS.gene70500.t1.exon3;Parent=MS.gene70500.t1 |
| chr3.1 | CDS | 67012533 | 67012838 | 67012533 | ID=cds.MS.gene70500.t1;Parent=MS.gene70500.t1 |
| Gene Sequence |
| Protein sequence |
