Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71461.t1 | XP_013468709.1 | 89.3 | 673 | 69 | 3 | 1 | 672 | 1 | 671 | 0.00E+00 | 1228 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71461.t1 | Q9SS87 | 25.0 | 688 | 427 | 25 | 42 | 666 | 70 | 731 | 1.1e-44 | 183.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71461.t1 | E2FKJ3 | 89.3 | 673 | 69 | 3 | 1 | 672 | 1 | 671 | 0.0e+00 | 1228.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene71461 | 0.8259 | 3.64E-54 | -1.69E-46 |
| MS.gene051955 | MS.gene71461 | 0.815224 | 1.03E-51 | -1.69E-46 |
| MS.gene054118 | MS.gene71461 | 0.823953 | 1.05E-53 | -1.69E-46 |
| MS.gene055777 | MS.gene71461 | 0.805216 | 1.49E-49 | -1.69E-46 |
| MS.gene055957 | MS.gene71461 | 0.807369 | 5.23E-50 | -1.69E-46 |
| MS.gene056041 | MS.gene71461 | 0.823518 | 1.33E-53 | -1.69E-46 |
| MS.gene056042 | MS.gene71461 | 0.827423 | 1.58E-54 | -1.69E-46 |
| MS.gene058196 | MS.gene71461 | 0.81693 | 4.29E-52 | -1.69E-46 |
| MS.gene058197 | MS.gene71461 | 0.816695 | 4.84E-52 | -1.69E-46 |
| MS.gene058198 | MS.gene71461 | 0.820088 | 8.25E-53 | -1.69E-46 |
| MS.gene058823 | MS.gene71461 | 0.802069 | 6.68E-49 | -1.69E-46 |
| MS.gene058853 | MS.gene71461 | 0.81419 | 1.75E-51 | -1.69E-46 |
| MS.gene058909 | MS.gene71461 | 0.813019 | 3.16E-51 | -1.69E-46 |
| MS.gene058912 | MS.gene71461 | 0.813261 | 2.80E-51 | -1.69E-46 |
| MS.gene059300 | MS.gene71461 | 0.817782 | 2.76E-52 | -1.69E-46 |
| MS.gene060473 | MS.gene71461 | 0.807149 | 5.82E-50 | -1.69E-46 |
| MS.gene06057 | MS.gene71461 | 0.804804 | 1.81E-49 | -1.69E-46 |
| MS.gene060825 | MS.gene71461 | 0.851506 | 8.49E-61 | -1.69E-46 |
| MS.gene061260 | MS.gene71461 | 0.811354 | 7.30E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71461.t1 | MTR_1g075153 | 89.302 | 673 | 69 | 3 | 1 | 672 | 1 | 671 | 0.0 | 1237 |
| MS.gene71461.t1 | MTR_1g075180 | 60.407 | 639 | 241 | 9 | 31 | 666 | 9 | 638 | 0.0 | 788 |
| MS.gene71461.t1 | MTR_1g075170 | 53.134 | 670 | 291 | 9 | 16 | 672 | 16 | 675 | 0.0 | 716 |
| MS.gene71461.t1 | MTR_1g040360 | 43.103 | 696 | 357 | 11 | 6 | 672 | 1 | 686 | 0.0 | 559 |
| MS.gene71461.t1 | MTR_1g074950 | 34.249 | 692 | 386 | 21 | 18 | 669 | 6 | 668 | 1.96e-101 | 324 |
| MS.gene71461.t1 | MTR_1g074990 | 29.718 | 673 | 411 | 16 | 33 | 669 | 20 | 666 | 7.07e-90 | 294 |
| MS.gene71461.t1 | MTR_1g075030 | 29.641 | 668 | 408 | 15 | 33 | 663 | 20 | 662 | 1.59e-84 | 280 |
| MS.gene71461.t1 | MTR_1g075095 | 29.940 | 668 | 406 | 16 | 33 | 663 | 20 | 662 | 3.63e-84 | 278 |
| MS.gene71461.t1 | MTR_1g075230 | 28.293 | 668 | 423 | 12 | 33 | 666 | 20 | 665 | 5.58e-83 | 275 |
| MS.gene71461.t1 | MTR_3g075450 | 25.273 | 732 | 441 | 27 | 8 | 662 | 2 | 704 | 4.18e-48 | 180 |
| MS.gene71461.t1 | MTR_7g032660 | 27.760 | 634 | 373 | 23 | 92 | 665 | 104 | 712 | 6.11e-48 | 180 |
| MS.gene71461.t1 | MTR_8g089660 | 26.080 | 625 | 387 | 23 | 92 | 663 | 101 | 703 | 5.40e-41 | 159 |
| MS.gene71461.t1 | MTR_8g063020 | 37.551 | 245 | 124 | 4 | 83 | 315 | 36 | 263 | 8.98e-37 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71461.t1 | AT3G01680 | 25.040 | 631 | 399 | 21 | 92 | 663 | 113 | 728 | 6.39e-46 | 174 |
| MS.gene71461.t1 | AT3G01670 | 22.826 | 736 | 411 | 24 | 35 | 662 | 134 | 820 | 1.01e-33 | 138 |
| MS.gene71461.t1 | AT3G01670 | 22.826 | 736 | 411 | 24 | 35 | 662 | 158 | 844 | 1.06e-33 | 138 |
| MS.gene71461.t1 | AT1G67790 | 21.255 | 701 | 425 | 23 | 29 | 647 | 2 | 657 | 1.62e-16 | 84.0 |
Find 144 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTCCTGTCTTTGTTTAT+TGG | 0.122437 | 1.3:+53669814 | MS.gene71461:CDS |
| TACATCATCTGAAATCTTTC+TGG | 0.136792 | 1.3:-53669676 | None:intergenic |
| GCTTATAGAGAGAGGCTTTC+TGG | 0.142359 | 1.3:+53670180 | MS.gene71461:CDS |
| ACCATATTGCCCACTCTTTC+AGG | 0.142806 | 1.3:-53669737 | None:intergenic |
| GCTGCTTTCACTTTGGAATA+TGG | 0.196918 | 1.3:+53669576 | MS.gene71461:CDS |
| CAAACGATCAACAATATCTT+TGG | 0.212916 | 1.3:-53670391 | None:intergenic |
| CTAACCGTGTTCCAAGTTTC+TGG | 0.231135 | 1.3:+53671670 | MS.gene71461:CDS |
| GCATAGAAGCATTCCCATTT+AGG | 0.255874 | 1.3:+53671058 | MS.gene71461:CDS |
| CCAACTCAAGTGTGAAATCT+TGG | 0.257534 | 1.3:-53671572 | None:intergenic |
| TAAAGAGTATTATGAGATTA+AGG | 0.261690 | 1.3:+53671929 | MS.gene71461:CDS |
| GACTGTGGATTGCGAGATTC+AGG | 0.273949 | 1.3:+53671734 | MS.gene71461:CDS |
| AGCTTCAGTGTAGGAAATTC+TGG | 0.283336 | 1.3:-53669346 | None:intergenic |
| GGACATAACATTAAACTTCT+TGG | 0.288405 | 1.3:+53671819 | MS.gene71461:CDS |
| GTGAATTTGTGGCATTCTTT+TGG | 0.296256 | 1.3:-53668894 | None:intergenic |
| AGTTGAAGTGGAGCTGGCTT+TGG | 0.302256 | 1.3:+53671103 | MS.gene71461:CDS |
| TCAATGTAGCCTATTAATTC+TGG | 0.303319 | 1.3:-53670955 | None:intergenic |
| GGGTTGAACACTGGGATAAT+AGG | 0.303798 | 1.3:-53670985 | None:intergenic |
| TGTGTCCAGTGTTGTACTTC+AGG | 0.307656 | 1.3:+53669041 | MS.gene71461:CDS |
| CTTTGGTTGAGTTTCAGAAT+TGG | 0.315143 | 1.3:+53671865 | MS.gene71461:CDS |
| AATCAAACACCAAGATTGTT+TGG | 0.319195 | 1.3:-53672104 | None:intergenic |
| CAAAACTAACCGATTTAACT+TGG | 0.323657 | 1.3:-53670470 | None:intergenic |
| ACACGTCCACACATAGGATT+TGG | 0.331012 | 1.3:-53672035 | None:intergenic |
| AAACTGGTTACAGAAATCTT+TGG | 0.333186 | 1.3:-53669319 | None:intergenic |
| AATCCGAAAGAACCAATAAA+AGG | 0.336470 | 1.3:+53670778 | MS.gene71461:CDS |
| CAGAAACTTGGAACACGGTT+AGG | 0.346769 | 1.3:-53671669 | None:intergenic |
| ATAAAAGATCCAGAATTAAT+AGG | 0.348273 | 1.3:+53670946 | MS.gene71461:CDS |
| GACAGATACATCTTTATCTA+TGG | 0.353153 | 1.3:+53671528 | MS.gene71461:CDS |
| TTCAGATGATGTAACTGAAT+TGG | 0.354961 | 1.3:+53669686 | MS.gene71461:CDS |
| TCTTTCTGACCCACAGATCT+TGG | 0.357820 | 1.3:+53668954 | MS.gene71461:CDS |
| TGAGAAGTTGGTTGCGCAAC+TGG | 0.359692 | 1.3:+53670209 | MS.gene71461:CDS |
| AGGAAATTCTGGTTTGAAAC+TGG | 0.363197 | 1.3:-53669335 | None:intergenic |
| TTGGCTCAAATTGCTATTAG+TGG | 0.371938 | 1.3:-53668875 | None:intergenic |
| GGAAACTATTTGCACCTTAA+CGG | 0.379564 | 1.3:+53669597 | MS.gene71461:CDS |
| AAACGATCAACAATATCTTT+GGG | 0.385496 | 1.3:-53670390 | None:intergenic |
| GATTGTCCACAAATCTTTGA+AGG | 0.387124 | 1.3:+53670441 | MS.gene71461:CDS |
| CAAGTCCATAGCATCTTCAT+TGG | 0.391630 | 1.3:-53671022 | None:intergenic |
| GCTTCAATTGTTGCTTCTAC+TGG | 0.392927 | 1.3:+53669843 | MS.gene71461:CDS |
| ACTTCTTGGTCACGGTGAAC+CGG | 0.408117 | 1.3:+53671833 | MS.gene71461:CDS |
| CCAAGATTTCACACTTGAGT+TGG | 0.414566 | 1.3:+53671572 | MS.gene71461:CDS |
| ACTGAAGCTGATTTCTTGTC+AGG | 0.416605 | 1.3:+53669360 | MS.gene71461:CDS |
| AAGAGCAACTCCTGGTATAC+AGG | 0.418681 | 1.3:+53671137 | MS.gene71461:CDS |
| ATGGAGGTACCAACAAGAAA+TGG | 0.425568 | 1.3:+53671547 | MS.gene71461:CDS |
| ACCTATAGTTCAAATGTTAT+AGG | 0.425924 | 1.3:+53671999 | MS.gene71461:CDS |
| TTCCTTTAGGGTTGAACACT+GGG | 0.427856 | 1.3:-53670993 | None:intergenic |
| TCATCCCACTTGTTCACAAT+GGG | 0.429462 | 1.3:-53670835 | None:intergenic |
| ATCTTGGATCCATTTCTTGT+TGG | 0.434085 | 1.3:-53671556 | None:intergenic |
| GAAGAATCCATAGTGTTGTT+TGG | 0.438259 | 1.3:-53669506 | None:intergenic |
| TTCTGGCATTGTTGAGAAGT+TGG | 0.438330 | 1.3:+53670197 | MS.gene71461:CDS |
| AACTCTAGCTGCTTTCACTT+TGG | 0.440676 | 1.3:+53669569 | MS.gene71461:CDS |
| GTTGAAGTGGAGCTGGCTTT+GGG | 0.443006 | 1.3:+53671104 | MS.gene71461:CDS |
| TGAATTGGTCAAACATATAG+TGG | 0.443756 | 1.3:+53669701 | MS.gene71461:CDS |
| TGTGGGTCAGAAAGATCAAA+TGG | 0.446611 | 1.3:-53668946 | None:intergenic |
| TCTATACCCATCCAGAAACT+TGG | 0.447489 | 1.3:-53671681 | None:intergenic |
| ACCTATAACATTTGAACTAT+AGG | 0.448924 | 1.3:-53672000 | None:intergenic |
| TCAGAAAGATCAAATGGGTT+TGG | 0.449551 | 1.3:-53668940 | None:intergenic |
| TATTATAACGTCTGCACGCT+TGG | 0.452880 | 1.3:-53671619 | None:intergenic |
| GCATACACCAAACAACACTA+TGG | 0.453423 | 1.3:+53669499 | MS.gene71461:CDS |
| AGGCAATGCCCAAGTTAAAT+CGG | 0.453857 | 1.3:+53670461 | MS.gene71461:CDS |
| GCTTCTACTGGCAACCTTGT+CGG | 0.456049 | 1.3:+53669855 | MS.gene71461:CDS |
| ATCATGTCCCTTTCCAACTT+AGG | 0.457041 | 1.3:+53668844 | None:intergenic |
| GTCAAAGCAGGAACATCAAC+CGG | 0.457526 | 1.3:-53669777 | None:intergenic |
| ACCTGAAAGAGTGGGCAATA+TGG | 0.460958 | 1.3:+53669736 | MS.gene71461:CDS |
| CCGTTGTTGCGACACCGTTA+AGG | 0.465134 | 1.3:-53669611 | None:intergenic |
| AGTGGCACTTCCACCTAAGT+TGG | 0.470174 | 1.3:-53668857 | None:intergenic |
| TTTCACACTTGAGTTGGAAA+AGG | 0.472700 | 1.3:+53671578 | MS.gene71461:CDS |
| CGTGATGAACCAAACAATCT+TGG | 0.480170 | 1.3:+53672095 | MS.gene71461:CDS |
| GACAAAGTGTTGGAGAAAGC+AGG | 0.481405 | 1.3:+53671891 | MS.gene71461:CDS |
| CATCCCATGAGTAAGATCTC+AGG | 0.482917 | 1.3:-53669533 | None:intergenic |
| CACGTCCACACATAGGATTT+GGG | 0.484874 | 1.3:-53672034 | None:intergenic |
| TGAACCGGCTTATCAAACTT+TGG | 0.489587 | 1.3:+53671848 | MS.gene71461:CDS |
| ACCTCAAGTTGAAGTGGAGC+TGG | 0.493519 | 1.3:+53671097 | MS.gene71461:CDS |
| ATTTGTTGCAGGCGCGATAG+AGG | 0.493594 | 1.3:+53670335 | MS.gene71461:intron |
| CAAAACCAATGAAGATGCTA+TGG | 0.494017 | 1.3:+53671017 | MS.gene71461:CDS |
| TCTCATCTTGAATGCTATCA+AGG | 0.496200 | 1.3:-53670717 | None:intergenic |
| ATTCCTTTAGGGTTGAACAC+TGG | 0.496497 | 1.3:-53670994 | None:intergenic |
| ATCCCAGTGTTCAACCCTAA+AGG | 0.500863 | 1.3:+53670991 | MS.gene71461:CDS |
| CAAACATATAGTGGAGATGT+TGG | 0.501391 | 1.3:+53669710 | MS.gene71461:CDS |
| GCATTGCCTTCAAAGATTTG+TGG | 0.502135 | 1.3:-53670447 | None:intergenic |
| ATTGTCCAATAAACAAAGAC+AGG | 0.505333 | 1.3:-53669819 | None:intergenic |
| TCAACCAAAGTTTGATAAGC+CGG | 0.505369 | 1.3:-53671852 | None:intergenic |
| TGCAAGGCGTCTGTCAAAGC+AGG | 0.508357 | 1.3:-53669789 | None:intergenic |
| TTGAGTTGGAAAAGGTCAAA+AGG | 0.509353 | 1.3:+53671586 | MS.gene71461:CDS |
| AAAACTAACCGATTTAACTT+GGG | 0.509360 | 1.3:-53670469 | None:intergenic |
| CCGTGTTCCAAGTTTCTGGA+TGG | 0.510982 | 1.3:+53671674 | MS.gene71461:CDS |
| TCCTATGTGTGGACGTGTGA+TGG | 0.515222 | 1.3:+53672040 | MS.gene71461:CDS |
| TATAATAGAGAATTATCAAG+TGG | 0.519025 | 1.3:+53671635 | MS.gene71461:CDS |
| GTCGCAACAACGGACACACT+TGG | 0.525682 | 1.3:+53669621 | MS.gene71461:CDS |
| AGAAACTTGGAACACGGTTA+GGG | 0.531778 | 1.3:-53671668 | None:intergenic |
| AAAACCTGAGATCTTACTCA+TGG | 0.549235 | 1.3:+53669529 | MS.gene71461:CDS |
| AACATTAAACTTCTTGGTCA+CGG | 0.554079 | 1.3:+53671825 | MS.gene71461:CDS |
| TGTTGGATCACCTGAAAGAG+TGG | 0.559929 | 1.3:+53669727 | MS.gene71461:CDS |
| CGTGTTCCAAGTTTCTGGAT+GGG | 0.560177 | 1.3:+53671675 | MS.gene71461:CDS |
| CACTTCCACCTAAGTTGGAA+AGG | 0.561679 | 1.3:-53668852 | None:intergenic |
| TGATGTGATTCAGGTGAAAG+TGG | 0.562041 | 1.3:+53671506 | MS.gene71461:intron |
| GACAATCAGTTCCATTGCGG+TGG | 0.564546 | 1.3:-53670425 | None:intergenic |
| AGACTCTGTCCAAGATCTGT+GGG | 0.566297 | 1.3:-53668963 | None:intergenic |
| GTCTGCTGAAGGCTATGATC+CGG | 0.567475 | 1.3:+53669758 | MS.gene71461:CDS |
| ACTTCCACCTAAGTTGGAAA+GGG | 0.571991 | 1.3:-53668851 | None:intergenic |
| ATGTCCCTTTCCAACTTAGG+TGG | 0.574423 | 1.3:+53668847 | MS.gene71461:CDS |
| GAATTGGAAAGACAAAGTGT+TGG | 0.576068 | 1.3:+53671881 | MS.gene71461:CDS |
| ACAAAGTGTTGGAGAAAGCA+GGG | 0.576612 | 1.3:+53671892 | MS.gene71461:CDS |
| AAGAAGACTTCAAGATTCTG+TGG | 0.578055 | 1.3:+53670809 | MS.gene71461:CDS |
| GCCAGCTCCACTTCAACTTG+AGG | 0.578077 | 1.3:-53671098 | None:intergenic |
| GTACTAACCTCAAGTTGAAG+TGG | 0.578286 | 1.3:+53671091 | MS.gene71461:CDS |
| AAAGCTTTGATCCACCGCAA+TGG | 0.579125 | 1.3:+53670414 | MS.gene71461:CDS |
| ATCATCCCACTTGTTCACAA+TGG | 0.581732 | 1.3:-53670836 | None:intergenic |
| CTTAGAATAAACCATCCTTG+TGG | 0.583984 | 1.3:-53671792 | None:intergenic |
| GGATGGTTTATTCTAAGCAA+AGG | 0.584169 | 1.3:+53671798 | MS.gene71461:CDS |
| TAGACTCTGTCCAAGATCTG+TGG | 0.589832 | 1.3:-53668964 | None:intergenic |
| GTCATCAAAAGAGCAACTCC+TGG | 0.591771 | 1.3:+53671129 | MS.gene71461:CDS |
| GTGGGTCAGAAAGATCAAAT+GGG | 0.593934 | 1.3:-53668945 | None:intergenic |
| AATTATCAGCTTATAGAGAG+AGG | 0.595338 | 1.3:+53670172 | MS.gene71461:CDS |
| TTCCCATTTAGGAAAAGTGA+TGG | 0.598584 | 1.3:+53671069 | MS.gene71461:CDS |
| CCTTAACGGTGTCGCAACAA+CGG | 0.599300 | 1.3:+53669611 | MS.gene71461:CDS |
| AAAATTCATCATCAGTGACA+TGG | 0.602591 | 1.3:-53668993 | None:intergenic |
| CAAGAAATCAGCTTCAGTGT+AGG | 0.603259 | 1.3:-53669355 | None:intergenic |
| GACTCTTAAAGTTGTTCGTG+CGG | 0.607253 | 1.3:-53670368 | None:intergenic |
| ATCCTTGTGGATCACGTCTG+AGG | 0.611100 | 1.3:-53671779 | None:intergenic |
| AAAGACAGGAATTTCTTGCA+AGG | 0.611562 | 1.3:-53669805 | None:intergenic |
| AAACCTGAGATCTTACTCAT+GGG | 0.614423 | 1.3:+53669530 | MS.gene71461:CDS |
| CAAGAAGCATCAAGAGACTG+TGG | 0.617134 | 1.3:+53671719 | MS.gene71461:CDS |
| GGAATGCTTCTATGCCCCAT+TGG | 0.617439 | 1.3:-53671050 | None:intergenic |
| AAATTCATCATCAGTGACAT+GGG | 0.620681 | 1.3:-53668992 | None:intergenic |
| ATAATAGAGAATTATCAAGT+GGG | 0.621818 | 1.3:+53671636 | MS.gene71461:CDS |
| TCATGCCCAAATCCTATGTG+TGG | 0.622369 | 1.3:+53672029 | MS.gene71461:CDS |
| AATTTCAAAACATTGAAGAG+TGG | 0.627666 | 1.3:+53670871 | MS.gene71461:CDS |
| TGCCTCAGACGTGATCCACA+AGG | 0.631014 | 1.3:+53671777 | MS.gene71461:CDS |
| TGGGCAATATGGTCTGCTGA+AGG | 0.631214 | 1.3:+53669747 | MS.gene71461:CDS |
| GAGAAGTTGGTTGCGCAACT+GGG | 0.641871 | 1.3:+53670210 | MS.gene71461:CDS |
| GTTGGATCACCTGAAAGAGT+GGG | 0.643180 | 1.3:+53669728 | MS.gene71461:CDS |
| TATAACCTGAAGTACAACAC+TGG | 0.646933 | 1.3:-53669046 | None:intergenic |
| CCATCCAGAAACTTGGAACA+CGG | 0.647174 | 1.3:-53671674 | None:intergenic |
| GGATCCCCATTGTGAACAAG+TGG | 0.649592 | 1.3:+53670830 | MS.gene71461:CDS |
| AGATACATCTTTATCTATGG+AGG | 0.650594 | 1.3:+53671531 | MS.gene71461:CDS |
| GATTGTTTGGTTCATCACGA+TGG | 0.650985 | 1.3:-53672091 | None:intergenic |
| TCCATCACACGTCCACACAT+AGG | 0.651294 | 1.3:-53672041 | None:intergenic |
| GTGGACAATCAGTTCCATTG+CGG | 0.652857 | 1.3:-53670428 | None:intergenic |
| TCAGACGTGATCCACAAGGA+TGG | 0.655320 | 1.3:+53671781 | MS.gene71461:CDS |
| GCAATGAGCATCATTACGTG+TGG | 0.675302 | 1.3:-53669478 | None:intergenic |
| AAACTTACGAAACACCGACA+AGG | 0.675763 | 1.3:-53669869 | None:intergenic |
| TATGTGTGGACGTGTGATGG+AGG | 0.691965 | 1.3:+53672043 | MS.gene71461:CDS |
| TCAACATTAAGAACTTCACA+TGG | 0.707918 | 1.3:-53671975 | None:intergenic |
| CATCCCACTTGTTCACAATG+GGG | 0.719744 | 1.3:-53670834 | None:intergenic |
| GATCCCCATTGTGAACAAGT+GGG | 0.735559 | 1.3:+53670831 | MS.gene71461:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTTAATATATACATAAAA+GGG | - | chr1.3:53669251-53669270 | None:intergenic | 10.0% |
| !! | TATAAAAATTATAAACAATG+TGG | + | chr1.3:53671212-53671231 | MS.gene71461:intron | 10.0% |
| !!! | ATTTGAATAATTTTGATATA+TGG | + | chr1.3:53671173-53671192 | MS.gene71461:intron | 10.0% |
| !! | CTACTTAATATATACATAAA+AGG | - | chr1.3:53669252-53669271 | None:intergenic | 15.0% |
| !!! | TCATTTTACTTCTTTTTAAT+TGG | - | chr1.3:53671240-53671259 | None:intergenic | 15.0% |
| !!! | TCTAACAATAATATTTTTTG+TGG | - | chr1.3:53670002-53670021 | None:intergenic | 15.0% |
| !! | AATTTATGTCAATGAACTTA+TGG | + | chr1.3:53669176-53669195 | MS.gene71461:intron | 20.0% |
| !! | AGACATTATAACCAATTAAA+GGG | - | chr1.3:53671441-53671460 | None:intergenic | 20.0% |
| !! | ATAAAAGATCCAGAATTAAT+AGG | + | chr1.3:53670946-53670965 | MS.gene71461:CDS | 20.0% |
| !! | ATAATAGAGAATTATCAAGT+GGG | + | chr1.3:53671636-53671655 | MS.gene71461:CDS | 20.0% |
| !! | CCTTGATAAAATAATAACAT+TGG | + | chr1.3:53669200-53669219 | MS.gene71461:intron | 20.0% |
| !! | TATAATAGAGAATTATCAAG+TGG | + | chr1.3:53671635-53671654 | MS.gene71461:CDS | 20.0% |
| !! | TCAAAATTATTCAAATTGTG+AGG | - | chr1.3:53671169-53671188 | None:intergenic | 20.0% |
| !! | TTCATTTATGTAATATTGCA+GGG | + | chr1.3:53670649-53670668 | MS.gene71461:intron | 20.0% |
| !! | TTTAAAGACTTCAATTGATA+TGG | - | chr1.3:53669118-53669137 | None:intergenic | 20.0% |
| !!! | ATGATTATTTTCTGATCAAT+TGG | + | chr1.3:53671256-53671275 | MS.gene71461:intron | 20.0% |
| !!! | ATTACTTATCTTTGTTTTCT+AGG | + | chr1.3:53670142-53670161 | MS.gene71461:intron | 20.0% |
| !!! | CCAATGTTATTATTTTATCA+AGG | - | chr1.3:53669203-53669222 | None:intergenic | 20.0% |
| !!! | TAAAGAGTATTATGAGATTA+AGG | + | chr1.3:53671929-53671948 | MS.gene71461:CDS | 20.0% |
| !!! | TTACTTATCTTTGTTTTCTA+GGG | + | chr1.3:53670143-53670162 | MS.gene71461:intron | 20.0% |
| ! | AAACGATCAACAATATCTTT+GGG | - | chr1.3:53670393-53670412 | None:intergenic | 25.0% |
| ! | AATTTCAAAACATTGAAGAG+TGG | + | chr1.3:53670871-53670890 | MS.gene71461:CDS | 25.0% |
| ! | ACCTATAACATTTGAACTAT+AGG | - | chr1.3:53672003-53672022 | None:intergenic | 25.0% |
| ! | ACCTATAGTTCAAATGTTAT+AGG | + | chr1.3:53671999-53672018 | MS.gene71461:CDS | 25.0% |
| ! | ATCAATTGGTTATACTATCT+TGG | + | chr1.3:53671270-53671289 | MS.gene71461:intron | 25.0% |
| ! | CAGACATTATAACCAATTAA+AGG | - | chr1.3:53671442-53671461 | None:intergenic | 25.0% |
| ! | GTTCATTTATGTAATATTGC+AGG | + | chr1.3:53670648-53670667 | MS.gene71461:intron | 25.0% |
| ! | TGTGTTATCTTAGTAGATTA+AGG | + | chr1.3:53669401-53669420 | MS.gene71461:intron | 25.0% |
| ! | TTGATATTACGGAAAAATGT+GGG | + | chr1.3:53669918-53669937 | MS.gene71461:intron | 25.0% |
| !! | AAAACTAACCGATTTAACTT+GGG | - | chr1.3:53670472-53670491 | None:intergenic | 25.0% |
| !! | AAATTCCTGTCTTTGTTTAT+TGG | + | chr1.3:53669814-53669833 | MS.gene71461:CDS | 25.0% |
| !! | TCTTTCTTGAAACCTTTTAT+TGG | - | chr1.3:53670793-53670812 | None:intergenic | 25.0% |
| !!! | AAACCTTTTATTGGTTCTTT+CGG | - | chr1.3:53670784-53670803 | None:intergenic | 25.0% |
| !!! | ATGTTTTGAAATTTTCTCTC+TGG | - | chr1.3:53670864-53670883 | None:intergenic | 25.0% |
| !!! | TTAGTTTTGAAACATGTAGT+AGG | + | chr1.3:53670484-53670503 | MS.gene71461:intron | 25.0% |
| !!! | TTTTTGTTGTAGTGAATTTG+TGG | - | chr1.3:53668908-53668927 | None:intergenic | 25.0% |
| AAAATTCATCATCAGTGACA+TGG | - | chr1.3:53668996-53669015 | None:intergenic | 30.0% | |
| AAACTGGTTACAGAAATCTT+TGG | - | chr1.3:53669322-53669341 | None:intergenic | 30.0% | |
| AAATTCATCATCAGTGACAT+GGG | - | chr1.3:53668995-53669014 | None:intergenic | 30.0% | |
| AACATTAAACTTCTTGGTCA+CGG | + | chr1.3:53671825-53671844 | MS.gene71461:CDS | 30.0% | |
| AATCCGAAAGAACCAATAAA+AGG | + | chr1.3:53670778-53670797 | MS.gene71461:CDS | 30.0% | |
| AATTATCAGCTTATAGAGAG+AGG | + | chr1.3:53670172-53670191 | MS.gene71461:CDS | 30.0% | |
| ACCTGAATCACATCATTAAA+TGG | - | chr1.3:53671501-53671520 | None:intergenic | 30.0% | |
| AGATACATCTTTATCTATGG+AGG | + | chr1.3:53671531-53671550 | MS.gene71461:CDS | 30.0% | |
| ATTGTCCAATAAACAAAGAC+AGG | - | chr1.3:53669822-53669841 | None:intergenic | 30.0% | |
| ATTTGTGATCAAAATCTCAG+AGG | - | chr1.3:53670290-53670309 | None:intergenic | 30.0% | |
| CAAACGATCAACAATATCTT+TGG | - | chr1.3:53670394-53670413 | None:intergenic | 30.0% | |
| CTATGCAAACCTTGATATTA+CGG | + | chr1.3:53669907-53669926 | MS.gene71461:intron | 30.0% | |
| CTTGATATTACGGAAAAATG+TGG | + | chr1.3:53669917-53669936 | MS.gene71461:intron | 30.0% | |
| GAATAGTCTGCAAAACAATT+TGG | - | chr1.3:53669300-53669319 | None:intergenic | 30.0% | |
| GACAGATACATCTTTATCTA+TGG | + | chr1.3:53671528-53671547 | MS.gene71461:CDS | 30.0% | |
| GGACATAACATTAAACTTCT+TGG | + | chr1.3:53671819-53671838 | MS.gene71461:CDS | 30.0% | |
| TCAACATTAAGAACTTCACA+TGG | - | chr1.3:53671978-53671997 | None:intergenic | 30.0% | |
| TCAATGTAGCCTATTAATTC+TGG | - | chr1.3:53670958-53670977 | None:intergenic | 30.0% | |
| TCCATTTAATGATGTGATTC+AGG | + | chr1.3:53671497-53671516 | MS.gene71461:intron | 30.0% | |
| TGAATTGGTCAAACATATAG+TGG | + | chr1.3:53669701-53669720 | MS.gene71461:CDS | 30.0% | |
| TTCAGATGATGTAACTGAAT+TGG | + | chr1.3:53669686-53669705 | MS.gene71461:CDS | 30.0% | |
| TTTGTGATCAAAATCTCAGA+GGG | - | chr1.3:53670289-53670308 | None:intergenic | 30.0% | |
| ! | AGCTTATATCTATTTGTTGC+AGG | + | chr1.3:53670324-53670343 | MS.gene71461:intron | 30.0% |
| ! | CAAAACTAACCGATTTAACT+TGG | - | chr1.3:53670473-53670492 | None:intergenic | 30.0% |
| ! | CACATTTTTCCGTAATATCA+AGG | - | chr1.3:53669919-53669938 | None:intergenic | 30.0% |
| ! | CTGGATCTTTTATTATCTTG+AGG | - | chr1.3:53670939-53670958 | None:intergenic | 30.0% |
| ! | TACATCATCTGAAATCTTTC+TGG | - | chr1.3:53669679-53669698 | None:intergenic | 30.0% |
| ! | TATGGACTTGATTTTCCAAT+GGG | + | chr1.3:53671035-53671054 | MS.gene71461:CDS | 30.0% |
| ! | TGGCATCAAATTTTATGTAG+TGG | + | chr1.3:53670891-53670910 | MS.gene71461:CDS | 30.0% |
| !! | TACCATCACTTTTCCTAAAT+GGG | - | chr1.3:53671074-53671093 | None:intergenic | 30.0% |
| !!! | CATTGGTTTTGATTCCTTTA+GGG | - | chr1.3:53671008-53671027 | None:intergenic | 30.0% |
| !!! | TCATTGGTTTTGATTCCTTT+AGG | - | chr1.3:53671009-53671028 | None:intergenic | 30.0% |
| AAAACCTGAGATCTTACTCA+TGG | + | chr1.3:53669529-53669548 | MS.gene71461:CDS | 35.0% | |
| AAACCTGAGATCTTACTCAT+GGG | + | chr1.3:53669530-53669549 | MS.gene71461:CDS | 35.0% | |
| AAAGACAGGAATTTCTTGCA+AGG | - | chr1.3:53669808-53669827 | None:intergenic | 35.0% | |
| AAGAAGACTTCAAGATTCTG+TGG | + | chr1.3:53670809-53670828 | MS.gene71461:CDS | 35.0% | |
| ATCTTGGATCCATTTCTTGT+TGG | - | chr1.3:53671559-53671578 | None:intergenic | 35.0% | |
| CAAAACCAATGAAGATGCTA+TGG | + | chr1.3:53671017-53671036 | MS.gene71461:CDS | 35.0% | |
| CTTAGAATAAACCATCCTTG+TGG | - | chr1.3:53671795-53671814 | None:intergenic | 35.0% | |
| CTTTGGTTGAGTTTCAGAAT+TGG | + | chr1.3:53671865-53671884 | MS.gene71461:CDS | 35.0% | |
| GAATTGGAAAGACAAAGTGT+TGG | + | chr1.3:53671881-53671900 | MS.gene71461:CDS | 35.0% | |
| GATTGTCCACAAATCTTTGA+AGG | + | chr1.3:53670441-53670460 | MS.gene71461:CDS | 35.0% | |
| GGAAACTATTTGCACCTTAA+CGG | + | chr1.3:53669597-53669616 | MS.gene71461:CDS | 35.0% | |
| GGATGGTTTATTCTAAGCAA+AGG | + | chr1.3:53671798-53671817 | MS.gene71461:CDS | 35.0% | |
| TAACCAATTAAAGGGCAATC+TGG | - | chr1.3:53671433-53671452 | None:intergenic | 35.0% | |
| TATAACCTGAAGTACAACAC+TGG | - | chr1.3:53669049-53669068 | None:intergenic | 35.0% | |
| TCAACCAAAGTTTGATAAGC+CGG | - | chr1.3:53671855-53671874 | None:intergenic | 35.0% | |
| TCTCATCTTGAATGCTATCA+AGG | - | chr1.3:53670720-53670739 | None:intergenic | 35.0% | |
| TTATACTATCTTGGCGCAAT+TGG | + | chr1.3:53671279-53671298 | MS.gene71461:intron | 35.0% | |
| TTCCCATTTAGGAAAAGTGA+TGG | + | chr1.3:53671069-53671088 | MS.gene71461:CDS | 35.0% | |
| ! | ATGGACTTGATTTTCCAATG+GGG | + | chr1.3:53671036-53671055 | MS.gene71461:CDS | 35.0% |
| ! | CAAACATATAGTGGAGATGT+TGG | + | chr1.3:53669710-53669729 | MS.gene71461:CDS | 35.0% |
| ! | CGGTGTTTCGTAAGTTTTTA+TGG | + | chr1.3:53669875-53669894 | MS.gene71461:intron | 35.0% |
| ! | CTATGGACTTGATTTTCCAA+TGG | + | chr1.3:53671034-53671053 | MS.gene71461:CDS | 35.0% |
| ! | GAAGAATCCATAGTGTTGTT+TGG | - | chr1.3:53669509-53669528 | None:intergenic | 35.0% |
| ! | GTGAATTTGTGGCATTCTTT+TGG | - | chr1.3:53668897-53668916 | None:intergenic | 35.0% |
| ! | TCAGAAAGATCAAATGGGTT+TGG | - | chr1.3:53668943-53668962 | None:intergenic | 35.0% |
| ! | TCTTTTATTATCTTGAGGCC+TGG | - | chr1.3:53670934-53670953 | None:intergenic | 35.0% |
| ! | TTGGCTCAAATTGCTATTAG+TGG | - | chr1.3:53668878-53668897 | None:intergenic | 35.0% |
| !! | AGGAAATTCTGGTTTGAAAC+TGG | - | chr1.3:53669338-53669357 | None:intergenic | 35.0% |
| !! | GTACCATCACTTTTCCTAAA+TGG | - | chr1.3:53671075-53671094 | None:intergenic | 35.0% |
| !! | TTGAGTTGGAAAAGGTCAAA+AGG | + | chr1.3:53671586-53671605 | MS.gene71461:CDS | 35.0% |
| !! | TTTCACACTTGAGTTGGAAA+AGG | + | chr1.3:53671578-53671597 | MS.gene71461:CDS | 35.0% |
| AAACTTACGAAACACCGACA+AGG | - | chr1.3:53669872-53669891 | None:intergenic | 40.0% | |
| ACACCAGATTGCCCTTTAAT+TGG | + | chr1.3:53671427-53671446 | MS.gene71461:intron | 40.0% | |
| ACTAAAACTTCAGCATACGC+AGG | - | chr1.3:53671407-53671426 | None:intergenic | 40.0% | |
| AGAAACTTGGAACACGGTTA+GGG | - | chr1.3:53671671-53671690 | None:intergenic | 40.0% | |
| AGCTTCAGTGTAGGAAATTC+TGG | - | chr1.3:53669349-53669368 | None:intergenic | 40.0% | |
| AGGCAATGCCCAAGTTAAAT+CGG | + | chr1.3:53670461-53670480 | MS.gene71461:CDS | 40.0% | |
| ATCATCCCACTTGTTCACAA+TGG | - | chr1.3:53670839-53670858 | None:intergenic | 40.0% | |
| CAAGAAATCAGCTTCAGTGT+AGG | - | chr1.3:53669358-53669377 | None:intergenic | 40.0% | |
| CAAGTCCATAGCATCTTCAT+TGG | - | chr1.3:53671025-53671044 | None:intergenic | 40.0% | |
| CCAACTCAAGTGTGAAATCT+TGG | - | chr1.3:53671575-53671594 | None:intergenic | 40.0% | |
| CCAAGATTTCACACTTGAGT+TGG | + | chr1.3:53671572-53671591 | MS.gene71461:CDS | 40.0% | |
| CGTGATGAACCAAACAATCT+TGG | + | chr1.3:53672095-53672114 | MS.gene71461:CDS | 40.0% | |
| CTAAAACTTCAGCATACGCA+GGG | - | chr1.3:53671406-53671425 | None:intergenic | 40.0% | |
| GACTCTTAAAGTTGTTCGTG+CGG | - | chr1.3:53670371-53670390 | None:intergenic | 40.0% | |
| GCATACACCAAACAACACTA+TGG | + | chr1.3:53669499-53669518 | MS.gene71461:CDS | 40.0% | |
| GCATTGCCTTCAAAGATTTG+TGG | - | chr1.3:53670450-53670469 | None:intergenic | 40.0% | |
| GCTGCATACAATACACCAAA+TGG | + | chr1.3:53671363-53671382 | MS.gene71461:intron | 40.0% | |
| GTGGGAAACAATGACTAATG+TGG | + | chr1.3:53669936-53669955 | MS.gene71461:intron | 40.0% | |
| GTGGGTCAGAAAGATCAAAT+GGG | - | chr1.3:53668948-53668967 | None:intergenic | 40.0% | |
| GTTGATGTCATGTGACTGAA+AGG | + | chr1.3:53671306-53671325 | MS.gene71461:intron | 40.0% | |
| TATTATAACGTCTGCACGCT+TGG | - | chr1.3:53671622-53671641 | None:intergenic | 40.0% | |
| TCATCCCACTTGTTCACAAT+GGG | - | chr1.3:53670838-53670857 | None:intergenic | 40.0% | |
| TCTATACCCATCCAGAAACT+TGG | - | chr1.3:53671684-53671703 | None:intergenic | 40.0% | |
| TGATGTGATTCAGGTGAAAG+TGG | + | chr1.3:53671506-53671525 | MS.gene71461:intron | 40.0% | |
| TGTGGGTCAGAAAGATCAAA+TGG | - | chr1.3:53668949-53668968 | None:intergenic | 40.0% | |
| TTCTGGCATTGTTGAGAAGT+TGG | + | chr1.3:53670197-53670216 | MS.gene71461:CDS | 40.0% | |
| ! | AACTCTAGCTGCTTTCACTT+TGG | + | chr1.3:53669569-53669588 | MS.gene71461:CDS | 40.0% |
| ! | ACTGAAGCTGATTTCTTGTC+AGG | + | chr1.3:53669360-53669379 | MS.gene71461:CDS | 40.0% |
| ! | ACTTCCACCTAAGTTGGAAA+GGG | - | chr1.3:53668854-53668873 | None:intergenic | 40.0% |
| ! | GAGGTTTTTACCTGTATACC+AGG | - | chr1.3:53671150-53671169 | None:intergenic | 40.0% |
| ! | GAGTACTTTTCTGAGTTACC+AGG | + | chr1.3:53670913-53670932 | MS.gene71461:CDS | 40.0% |
| ! | GATTGTTTGGTTCATCACGA+TGG | - | chr1.3:53672094-53672113 | None:intergenic | 40.0% |
| ! | GCTTCAATTGTTGCTTCTAC+TGG | + | chr1.3:53669843-53669862 | MS.gene71461:CDS | 40.0% |
| ! | TGAACCGGCTTATCAAACTT+TGG | + | chr1.3:53671848-53671867 | MS.gene71461:CDS | 40.0% |
| !! | ACAAAGTGTTGGAGAAAGCA+GGG | + | chr1.3:53671892-53671911 | MS.gene71461:CDS | 40.0% |
| !! | ATGGAGGTACCAACAAGAAA+TGG | + | chr1.3:53671547-53671566 | MS.gene71461:CDS | 40.0% |
| !! | ATTCCTTTAGGGTTGAACAC+TGG | - | chr1.3:53670997-53671016 | None:intergenic | 40.0% |
| !! | GCATAGAAGCATTCCCATTT+AGG | + | chr1.3:53671058-53671077 | MS.gene71461:CDS | 40.0% |
| !! | GCTGCTTTCACTTTGGAATA+TGG | + | chr1.3:53669576-53669595 | MS.gene71461:CDS | 40.0% |
| !! | GTACTAACCTCAAGTTGAAG+TGG | + | chr1.3:53671091-53671110 | MS.gene71461:CDS | 40.0% |
| !! | TTCCTTTAGGGTTGAACACT+GGG | - | chr1.3:53670996-53671015 | None:intergenic | 40.0% |
| AAGAGCAACTCCTGGTATAC+AGG | + | chr1.3:53671137-53671156 | MS.gene71461:CDS | 45.0% | |
| ACACGTCCACACATAGGATT+TGG | - | chr1.3:53672038-53672057 | None:intergenic | 45.0% | |
| ACCATATTGCCCACTCTTTC+AGG | - | chr1.3:53669740-53669759 | None:intergenic | 45.0% | |
| ACCTGAAAGAGTGGGCAATA+TGG | + | chr1.3:53669736-53669755 | MS.gene71461:CDS | 45.0% | |
| AGACTCTGTCCAAGATCTGT+GGG | - | chr1.3:53668966-53668985 | None:intergenic | 45.0% | |
| ATCCCAGTGTTCAACCCTAA+AGG | + | chr1.3:53670991-53671010 | MS.gene71461:CDS | 45.0% | |
| ATGTCCCTTTCCAACTTAGG+TGG | + | chr1.3:53668847-53668866 | MS.gene71461:CDS | 45.0% | |
| CAATCATTTGCGCTAGACCT+CGG | + | chr1.3:53670556-53670575 | MS.gene71461:intron | 45.0% | |
| CACGTCCACACATAGGATTT+GGG | - | chr1.3:53672037-53672056 | None:intergenic | 45.0% | |
| CAGAAACTTGGAACACGGTT+AGG | - | chr1.3:53671672-53671691 | None:intergenic | 45.0% | |
| CATCCCACTTGTTCACAATG+GGG | - | chr1.3:53670837-53670856 | None:intergenic | 45.0% | |
| CATCCCATGAGTAAGATCTC+AGG | - | chr1.3:53669536-53669555 | None:intergenic | 45.0% | |
| CCATCCAGAAACTTGGAACA+CGG | - | chr1.3:53671677-53671696 | None:intergenic | 45.0% | |
| CTAACCGTGTTCCAAGTTTC+TGG | + | chr1.3:53671670-53671689 | MS.gene71461:CDS | 45.0% | |
| GACTAATGTGGCCACAATTG+CGG | + | chr1.3:53669948-53669967 | MS.gene71461:intron | 45.0% | |
| GATCCCCATTGTGAACAAGT+GGG | + | chr1.3:53670831-53670850 | MS.gene71461:CDS | 45.0% | |
| GCAATGAGCATCATTACGTG+TGG | - | chr1.3:53669481-53669500 | None:intergenic | 45.0% | |
| GCTTATAGAGAGAGGCTTTC+TGG | + | chr1.3:53670180-53670199 | MS.gene71461:CDS | 45.0% | |
| GGGTTGAACACTGGGATAAT+AGG | - | chr1.3:53670988-53671007 | None:intergenic | 45.0% | |
| GTATTGTATGCAGCCTTACC+TGG | - | chr1.3:53671357-53671376 | None:intergenic | 45.0% | |
| GTCAAAGCAGGAACATCAAC+CGG | - | chr1.3:53669780-53669799 | None:intergenic | 45.0% | |
| GTCATCAAAAGAGCAACTCC+TGG | + | chr1.3:53671129-53671148 | MS.gene71461:CDS | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | + | chr1.3:53671312-53671331 | MS.gene71461:intron | 45.0% | |
| GTGGACAATCAGTTCCATTG+CGG | - | chr1.3:53670431-53670450 | None:intergenic | 45.0% | |
| GTTGGATCACCTGAAAGAGT+GGG | + | chr1.3:53669728-53669747 | MS.gene71461:CDS | 45.0% | |
| TAGACTCTGTCCAAGATCTG+TGG | - | chr1.3:53668967-53668986 | None:intergenic | 45.0% | |
| TCATGCCCAAATCCTATGTG+TGG | + | chr1.3:53672029-53672048 | MS.gene71461:CDS | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | + | chr1.3:53671313-53671332 | MS.gene71461:intron | 45.0% | |
| TCTTTCTGACCCACAGATCT+TGG | + | chr1.3:53668954-53668973 | MS.gene71461:CDS | 45.0% | |
| TGTGTCCAGTGTTGTACTTC+AGG | + | chr1.3:53669041-53669060 | MS.gene71461:CDS | 45.0% | |
| TGTTGGATCACCTGAAAGAG+TGG | + | chr1.3:53669727-53669746 | MS.gene71461:CDS | 45.0% | |
| ! | AAAGCTTTGATCCACCGCAA+TGG | + | chr1.3:53670414-53670433 | MS.gene71461:CDS | 45.0% |
| ! | CACTTCCACCTAAGTTGGAA+AGG | - | chr1.3:53668855-53668874 | None:intergenic | 45.0% |
| ! | CGTGTTCCAAGTTTCTGGAT+GGG | + | chr1.3:53671675-53671694 | MS.gene71461:CDS | 45.0% |
| ! | TGCGAGTGCTGTAAACTCTA+AGG | - | chr1.3:53670524-53670543 | None:intergenic | 45.0% |
| !! | CAAGAAGCATCAAGAGACTG+TGG | + | chr1.3:53671719-53671738 | MS.gene71461:CDS | 45.0% |
| !! | GACAAAGTGTTGGAGAAAGC+AGG | + | chr1.3:53671891-53671910 | MS.gene71461:CDS | 45.0% |
| AACTTCAGCATACGCAGGGT+CGG | - | chr1.3:53671402-53671421 | None:intergenic | 50.0% | |
| ACTTCTTGGTCACGGTGAAC+CGG | + | chr1.3:53671833-53671852 | MS.gene71461:CDS | 50.0% | |
| AGTGGCACTTCCACCTAAGT+TGG | - | chr1.3:53668860-53668879 | None:intergenic | 50.0% | |
| ATCCTTGTGGATCACGTCTG+AGG | - | chr1.3:53671782-53671801 | None:intergenic | 50.0% | |
| CAGCATCACAACCGCAATTG+TGG | - | chr1.3:53669962-53669981 | None:intergenic | 50.0% | |
| CGAGGTCTAGCGCAAATGAT+TGG | - | chr1.3:53670558-53670577 | None:intergenic | 50.0% | |
| GACAATCAGTTCCATTGCGG+TGG | - | chr1.3:53670428-53670447 | None:intergenic | 50.0% | |
| GCTTCTACTGGCAACCTTGT+CGG | + | chr1.3:53669855-53669874 | MS.gene71461:CDS | 50.0% | |
| GGAATGCTTCTATGCCCCAT+TGG | - | chr1.3:53671053-53671072 | None:intergenic | 50.0% | |
| GGATCCCCATTGTGAACAAG+TGG | + | chr1.3:53670830-53670849 | MS.gene71461:CDS | 50.0% | |
| GTCTGCTGAAGGCTATGATC+CGG | + | chr1.3:53669758-53669777 | MS.gene71461:CDS | 50.0% | |
| TAATGCATGTTGCACCACCG+AGG | - | chr1.3:53670576-53670595 | None:intergenic | 50.0% | |
| TATGTGTGGACGTGTGATGG+AGG | + | chr1.3:53672043-53672062 | MS.gene71461:CDS | 50.0% | |
| TCAGACGTGATCCACAAGGA+TGG | + | chr1.3:53671781-53671800 | MS.gene71461:CDS | 50.0% | |
| TCCATCACACGTCCACACAT+AGG | - | chr1.3:53672044-53672063 | None:intergenic | 50.0% | |
| TCCTATGTGTGGACGTGTGA+TGG | + | chr1.3:53672040-53672059 | MS.gene71461:CDS | 50.0% | |
| TGGGCAATATGGTCTGCTGA+AGG | + | chr1.3:53669747-53669766 | MS.gene71461:CDS | 50.0% | |
| TTCAAGTCCTGGAAACAGCC+AGG | + | chr1.3:53671336-53671355 | MS.gene71461:intron | 50.0% | |
| ! | AGTTGAAGTGGAGCTGGCTT+TGG | + | chr1.3:53671103-53671122 | MS.gene71461:CDS | 50.0% |
| ! | ATTTGTTGCAGGCGCGATAG+AGG | + | chr1.3:53670335-53670354 | MS.gene71461:intron | 50.0% |
| ! | CCGTGTTCCAAGTTTCTGGA+TGG | + | chr1.3:53671674-53671693 | MS.gene71461:CDS | 50.0% |
| ! | GACTGTGGATTGCGAGATTC+AGG | + | chr1.3:53671734-53671753 | MS.gene71461:CDS | 50.0% |
| ! | GAGAAGTTGGTTGCGCAACT+GGG | + | chr1.3:53670210-53670229 | MS.gene71461:CDS | 50.0% |
| ! | TGAGAAGTTGGTTGCGCAAC+TGG | + | chr1.3:53670209-53670228 | MS.gene71461:CDS | 50.0% |
| !! | ACCTCAAGTTGAAGTGGAGC+TGG | + | chr1.3:53671097-53671116 | MS.gene71461:CDS | 50.0% |
| !! | CCTTAACGGTGTCGCAACAA+CGG | + | chr1.3:53669611-53669630 | MS.gene71461:CDS | 50.0% |
| !! | GTTGAAGTGGAGCTGGCTTT+GGG | + | chr1.3:53671104-53671123 | MS.gene71461:CDS | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr1.3:53671325-53671344 | MS.gene71461:intron | 55.0% | |
| CCGTTGTTGCGACACCGTTA+AGG | - | chr1.3:53669614-53669633 | None:intergenic | 55.0% | |
| GCCAGCTCCACTTCAACTTG+AGG | - | chr1.3:53671101-53671120 | None:intergenic | 55.0% | |
| GGAGAAGGGGTCTCACCATT+TGG | - | chr1.3:53671381-53671400 | None:intergenic | 55.0% | |
| GTCCTGGAAACAGCCAGGTA+AGG | + | chr1.3:53671341-53671360 | MS.gene71461:intron | 55.0% | |
| GTCGCAACAACGGACACACT+TGG | + | chr1.3:53669621-53669640 | MS.gene71461:CDS | 55.0% | |
| TCATTTGCGCTAGACCTCGG+TGG | + | chr1.3:53670559-53670578 | MS.gene71461:intron | 55.0% | |
| TGCCTCAGACGTGATCCACA+AGG | + | chr1.3:53671777-53671796 | MS.gene71461:CDS | 55.0% | |
| TTGCGGTTGTGATGCTGTCG+TGG | + | chr1.3:53669965-53669984 | MS.gene71461:intron | 55.0% | |
| ! | AGCCTTACCTGGCTGTTTCC+AGG | - | chr1.3:53671346-53671365 | None:intergenic | 55.0% |
| ! | GTGATGCTGTCGTGGTCTTG+TGG | + | chr1.3:53669973-53669992 | MS.gene71461:intron | 55.0% |
| ! | TGCAAGGCGTCTGTCAAAGC+AGG | - | chr1.3:53669792-53669811 | None:intergenic | 55.0% |
| AGCATACGCAGGGTCGGAGA+AGG | - | chr1.3:53671396-53671415 | None:intergenic | 60.0% | |
| CATACGCAGGGTCGGAGAAG+GGG | - | chr1.3:53671394-53671413 | None:intergenic | 60.0% | |
| GCATACGCAGGGTCGGAGAA+GGG | - | chr1.3:53671395-53671414 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 53668847 | 53672124 | 53668847 | ID=MS.gene71461 |
| chr1.3 | mRNA | 53668847 | 53672124 | 53668847 | ID=MS.gene71461.t1;Parent=MS.gene71461 |
| chr1.3 | exon | 53668847 | 53669062 | 53668847 | ID=MS.gene71461.t1.exon1;Parent=MS.gene71461.t1 |
| chr1.3 | CDS | 53668847 | 53669062 | 53668847 | ID=cds.MS.gene71461.t1;Parent=MS.gene71461.t1 |
| chr1.3 | exon | 53669313 | 53669381 | 53669313 | ID=MS.gene71461.t1.exon2;Parent=MS.gene71461.t1 |
| chr1.3 | CDS | 53669313 | 53669381 | 53669313 | ID=cds.MS.gene71461.t1;Parent=MS.gene71461.t1 |
| chr1.3 | exon | 53669471 | 53669883 | 53669471 | ID=MS.gene71461.t1.exon3;Parent=MS.gene71461.t1 |
| chr1.3 | CDS | 53669471 | 53669883 | 53669471 | ID=cds.MS.gene71461.t1;Parent=MS.gene71461.t1 |
| chr1.3 | exon | 53670164 | 53670252 | 53670164 | ID=MS.gene71461.t1.exon4;Parent=MS.gene71461.t1 |
| chr1.3 | CDS | 53670164 | 53670252 | 53670164 | ID=cds.MS.gene71461.t1;Parent=MS.gene71461.t1 |
| chr1.3 | exon | 53670346 | 53670482 | 53670346 | ID=MS.gene71461.t1.exon5;Parent=MS.gene71461.t1 |
| chr1.3 | CDS | 53670346 | 53670482 | 53670346 | ID=cds.MS.gene71461.t1;Parent=MS.gene71461.t1 |
| chr1.3 | exon | 53670670 | 53671158 | 53670670 | ID=MS.gene71461.t1.exon6;Parent=MS.gene71461.t1 |
| chr1.3 | CDS | 53670670 | 53671158 | 53670670 | ID=cds.MS.gene71461.t1;Parent=MS.gene71461.t1 |
| chr1.3 | exon | 53671519 | 53672124 | 53671519 | ID=MS.gene71461.t1.exon7;Parent=MS.gene71461.t1 |
| chr1.3 | CDS | 53671519 | 53672124 | 53671519 | ID=cds.MS.gene71461.t1;Parent=MS.gene71461.t1 |
| Gene Sequence |
| Protein sequence |
