Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72676.t1 | XP_003612408.2 | 93.4 | 229 | 15 | 0 | 1 | 229 | 16 | 244 | 4.00E-116 | 427.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72676.t1 | O22757 | 59.0 | 229 | 90 | 3 | 4 | 230 | 29 | 255 | 1.8e-69 | 263.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72676.t1 | G7K2K3 | 93.4 | 229 | 15 | 0 | 1 | 229 | 16 | 244 | 2.9e-116 | 427.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049993 | MS.gene72676 | 0.802866 | 4.58E-49 | -1.69E-46 |
| MS.gene051525 | MS.gene72676 | 0.807858 | 4.12E-50 | -1.69E-46 |
| MS.gene051588 | MS.gene72676 | 0.837469 | 5.10E-57 | -1.69E-46 |
| MS.gene052011 | MS.gene72676 | -0.811781 | 5.90E-51 | -1.69E-46 |
| MS.gene054183 | MS.gene72676 | 0.839478 | 1.55E-57 | -1.69E-46 |
| MS.gene054548 | MS.gene72676 | 0.800207 | 1.61E-48 | -1.69E-46 |
| MS.gene054719 | MS.gene72676 | 0.801556 | 8.52E-49 | -1.69E-46 |
| MS.gene054920 | MS.gene72676 | 0.820433 | 6.88E-53 | -1.69E-46 |
| MS.gene057476 | MS.gene72676 | 0.801109 | 1.05E-48 | -1.69E-46 |
| MS.gene057887 | MS.gene72676 | 0.802319 | 5.94E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene72676 | 0.821515 | 3.88E-53 | -1.69E-46 |
| MS.gene059609 | MS.gene72676 | 0.80697 | 6.35E-50 | -1.69E-46 |
| MS.gene059868 | MS.gene72676 | 0.808374 | 3.20E-50 | -1.69E-46 |
| MS.gene059958 | MS.gene72676 | 0.855084 | 8.00E-62 | -1.69E-46 |
| MS.gene061114 | MS.gene72676 | -0.826114 | 3.24E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72676.t1 | MTR_5g024700 | 93.450 | 229 | 15 | 0 | 1 | 229 | 16 | 244 | 3.57e-155 | 443 |
| MS.gene72676.t1 | MTR_8g073130 | 66.087 | 230 | 74 | 4 | 1 | 230 | 27 | 252 | 7.25e-104 | 307 |
| MS.gene72676.t1 | MTR_8g073130 | 66.087 | 230 | 74 | 4 | 1 | 230 | 27 | 252 | 1.02e-103 | 306 |
| MS.gene72676.t1 | MTR_8g073130 | 66.087 | 230 | 74 | 4 | 1 | 230 | 27 | 252 | 6.47e-102 | 308 |
| MS.gene72676.t1 | MTR_3g115960 | 51.429 | 245 | 92 | 4 | 11 | 231 | 9 | 250 | 9.35e-73 | 231 |
| MS.gene72676.t1 | MTR_6g033330 | 44.156 | 231 | 124 | 2 | 6 | 231 | 2 | 232 | 4.25e-64 | 205 |
| MS.gene72676.t1 | MTR_6g033330 | 44.156 | 231 | 124 | 2 | 6 | 231 | 2 | 232 | 1.76e-62 | 205 |
| MS.gene72676.t1 | MTR_3g115940 | 47.489 | 219 | 100 | 4 | 11 | 220 | 7 | 219 | 2.04e-58 | 190 |
| MS.gene72676.t1 | MTR_3g115940 | 46.053 | 228 | 108 | 4 | 13 | 231 | 9 | 230 | 2.62e-57 | 190 |
| MS.gene72676.t1 | MTR_3g115940 | 46.256 | 227 | 107 | 4 | 13 | 230 | 9 | 229 | 6.01e-57 | 190 |
| MS.gene72676.t1 | MTR_2g093750 | 44.978 | 229 | 116 | 3 | 13 | 231 | 8 | 236 | 5.91e-53 | 180 |
| MS.gene72676.t1 | MTR_2g028470 | 46.111 | 180 | 89 | 2 | 12 | 189 | 7 | 180 | 2.19e-46 | 160 |
| MS.gene72676.t1 | MTR_4g079140 | 37.333 | 225 | 123 | 3 | 8 | 231 | 2 | 209 | 1.19e-45 | 160 |
| MS.gene72676.t1 | MTR_3g118190 | 42.453 | 212 | 98 | 4 | 13 | 209 | 12 | 214 | 3.08e-45 | 158 |
| MS.gene72676.t1 | MTR_3g115940 | 44.505 | 182 | 86 | 4 | 58 | 230 | 3 | 178 | 9.77e-45 | 157 |
| MS.gene72676.t1 | MTR_2g079500 | 37.004 | 227 | 120 | 5 | 6 | 219 | 2 | 218 | 4.37e-41 | 147 |
| MS.gene72676.t1 | MTR_8g010530 | 39.556 | 225 | 113 | 4 | 13 | 217 | 12 | 233 | 1.53e-40 | 145 |
| MS.gene72676.t1 | MTR_8g010500 | 39.216 | 204 | 105 | 6 | 31 | 215 | 28 | 231 | 1.15e-31 | 121 |
| MS.gene72676.t1 | MTR_5g022400 | 36.364 | 198 | 120 | 4 | 7 | 201 | 4 | 198 | 2.83e-25 | 102 |
| MS.gene72676.t1 | MTR_5g022400 | 36.364 | 198 | 120 | 4 | 7 | 201 | 4 | 198 | 1.65e-24 | 101 |
| MS.gene72676.t1 | MTR_2g006280 | 34.322 | 236 | 131 | 9 | 13 | 240 | 9 | 228 | 1.14e-21 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72676.t1 | AT2G17480 | 58.952 | 229 | 90 | 3 | 4 | 230 | 29 | 255 | 1.10e-88 | 274 |
| MS.gene72676.t1 | AT5G65970 | 56.140 | 228 | 86 | 3 | 2 | 229 | 23 | 236 | 3.56e-85 | 261 |
| MS.gene72676.t1 | AT5G65970 | 56.140 | 228 | 86 | 3 | 2 | 229 | 23 | 236 | 2.38e-84 | 262 |
| MS.gene72676.t1 | AT2G17430 | 53.712 | 229 | 97 | 2 | 2 | 230 | 20 | 239 | 3.37e-80 | 250 |
| MS.gene72676.t1 | AT2G33670 | 53.636 | 220 | 92 | 5 | 13 | 231 | 15 | 225 | 1.45e-72 | 229 |
| MS.gene72676.t1 | AT1G61560 | 48.696 | 230 | 108 | 2 | 12 | 231 | 7 | 236 | 1.44e-66 | 211 |
| MS.gene72676.t1 | AT1G61560 | 48.696 | 230 | 108 | 2 | 12 | 231 | 7 | 236 | 1.44e-66 | 211 |
| MS.gene72676.t1 | AT1G61560 | 48.696 | 230 | 108 | 2 | 12 | 231 | 7 | 236 | 1.44e-66 | 211 |
| MS.gene72676.t1 | AT1G61560 | 48.696 | 230 | 108 | 2 | 12 | 231 | 7 | 236 | 2.24e-66 | 211 |
| MS.gene72676.t1 | AT1G61560 | 48.696 | 230 | 108 | 2 | 12 | 231 | 7 | 236 | 2.24e-66 | 211 |
| MS.gene72676.t1 | AT1G61560 | 48.696 | 230 | 108 | 2 | 12 | 231 | 7 | 236 | 4.51e-66 | 211 |
| MS.gene72676.t1 | AT1G42560 | 52.703 | 222 | 99 | 4 | 13 | 231 | 14 | 232 | 6.00e-66 | 209 |
| MS.gene72676.t1 | AT1G61560 | 48.908 | 229 | 107 | 2 | 13 | 231 | 8 | 236 | 7.82e-65 | 211 |
| MS.gene72676.t1 | AT1G61560 | 48.908 | 229 | 107 | 2 | 13 | 231 | 8 | 236 | 8.97e-65 | 211 |
| MS.gene72676.t1 | AT1G42560 | 52.703 | 222 | 99 | 4 | 13 | 231 | 14 | 232 | 1.02e-64 | 208 |
| MS.gene72676.t1 | AT1G11310 | 47.845 | 232 | 108 | 4 | 13 | 231 | 8 | 239 | 4.79e-63 | 202 |
| MS.gene72676.t1 | AT1G11310 | 46.983 | 232 | 110 | 2 | 13 | 231 | 8 | 239 | 1.46e-61 | 202 |
| MS.gene72676.t1 | AT2G39200 | 44.196 | 224 | 119 | 2 | 13 | 230 | 6 | 229 | 8.75e-56 | 187 |
| MS.gene72676.t1 | AT2G44110 | 42.439 | 205 | 112 | 4 | 14 | 216 | 7 | 207 | 7.24e-49 | 167 |
| MS.gene72676.t1 | AT2G44110 | 42.029 | 207 | 111 | 6 | 14 | 216 | 7 | 208 | 5.21e-47 | 162 |
| MS.gene72676.t1 | AT3G45290 | 39.908 | 218 | 123 | 2 | 13 | 230 | 17 | 226 | 6.01e-45 | 157 |
| MS.gene72676.t1 | AT4G24250 | 44.444 | 180 | 91 | 3 | 12 | 189 | 6 | 178 | 1.98e-44 | 154 |
| MS.gene72676.t1 | AT4G24250 | 44.444 | 180 | 91 | 3 | 12 | 189 | 6 | 178 | 7.36e-44 | 154 |
| MS.gene72676.t1 | AT1G26700 | 38.272 | 243 | 135 | 5 | 7 | 243 | 4 | 237 | 3.52e-43 | 153 |
| MS.gene72676.t1 | AT1G26700 | 38.272 | 243 | 135 | 5 | 7 | 243 | 4 | 237 | 3.52e-43 | 153 |
| MS.gene72676.t1 | AT4G02600 | 40.000 | 215 | 118 | 4 | 14 | 217 | 9 | 223 | 1.25e-42 | 151 |
| MS.gene72676.t1 | AT4G02600 | 40.000 | 215 | 118 | 4 | 14 | 217 | 9 | 223 | 1.25e-42 | 151 |
| MS.gene72676.t1 | AT5G53760 | 38.356 | 219 | 131 | 3 | 5 | 219 | 8 | 226 | 4.43e-42 | 150 |
| MS.gene72676.t1 | AT5G53760 | 38.356 | 219 | 131 | 3 | 5 | 219 | 8 | 226 | 4.43e-42 | 150 |
| MS.gene72676.t1 | AT1G61560 | 44.828 | 174 | 86 | 2 | 68 | 231 | 1 | 174 | 2.63e-39 | 142 |
| MS.gene72676.t1 | AT1G61560 | 44.828 | 174 | 86 | 2 | 68 | 231 | 1 | 174 | 2.63e-39 | 142 |
| MS.gene72676.t1 | AT1G11310 | 41.808 | 177 | 90 | 2 | 68 | 231 | 1 | 177 | 1.80e-35 | 132 |
| MS.gene72676.t1 | AT1G11000 | 32.547 | 212 | 131 | 4 | 13 | 219 | 9 | 213 | 3.20e-21 | 92.0 |
| MS.gene72676.t1 | AT1G11000 | 32.547 | 212 | 131 | 4 | 13 | 219 | 9 | 213 | 8.08e-21 | 91.3 |
| MS.gene72676.t1 | AT1G11000 | 32.547 | 212 | 131 | 4 | 13 | 219 | 9 | 213 | 8.08e-21 | 91.3 |
Find 44 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCGTCCCGTCTTGCTAATC+TGG | 0.241857 | 5.4:+15871045 | MS.gene72676:CDS |
| ATTTCACTGTTATTAACTAT+TGG | 0.268067 | 5.4:+15869957 | MS.gene72676:CDS |
| AGTGCTGTCACAATGCTTCT+TGG | 0.313331 | 5.4:+15870619 | MS.gene72676:CDS |
| GACGGGACGCACAATATAAA+AGG | 0.355343 | 5.4:-15871033 | None:intergenic |
| TACCTTCCTGCTGCATTTGA+AGG | 0.366783 | 5.4:-15870144 | None:intergenic |
| CCATGTCCACATAAATATAT+AGG | 0.399986 | 5.4:+15870035 | MS.gene72676:CDS |
| GTGCAGATGCTGCAAAATTC+AGG | 0.444314 | 5.4:+15870949 | MS.gene72676:intron |
| AGAATATGAGGATGTGTAAC+TGG | 0.460799 | 5.4:-15870570 | None:intergenic |
| GTTAGGAAATAGAGAAAAGA+AGG | 0.465297 | 5.4:+15869762 | MS.gene72676:CDS |
| ATAGTAAAGTGGAACAAAGT+AGG | 0.485840 | 5.4:+15870075 | MS.gene72676:CDS |
| ATTTGTGAAAACTCTTCTCA+AGG | 0.491258 | 5.4:-15867525 | None:intergenic |
| CTGCAACTGCAAGTGATAGT+AGG | 0.493776 | 5.4:+15867422 | MS.gene72676:CDS |
| AAAACTCTTCTCAAGGGCTA+TGG | 0.499026 | 5.4:-15867518 | None:intergenic |
| CTCCCTCCTTCAAATGCAGC+AGG | 0.503605 | 5.4:+15870138 | MS.gene72676:CDS |
| ATCACTTGCAGTTGCAGCCA+TGG | 0.505471 | 5.4:-15867416 | None:intergenic |
| TCACCACCTATATATTTATG+TGG | 0.522982 | 5.4:-15870041 | None:intergenic |
| TATGAAATCAAATAGTAAAG+TGG | 0.527640 | 5.4:+15870064 | MS.gene72676:CDS |
| AGATACGTGGATGGAAGGAA+TGG | 0.539200 | 5.4:+15870750 | MS.gene72676:intron |
| CACTTGATCAAACACCGACA+TGG | 0.539851 | 5.4:+15867458 | MS.gene72676:CDS |
| CCTATATATTTATGTGGACA+TGG | 0.544668 | 5.4:-15870035 | None:intergenic |
| TCTGCTTGAAGCTCTAGAAA+AGG | 0.545191 | 5.4:+15869786 | MS.gene72676:CDS |
| CTTCCTGCTGCATTTGAAGG+AGG | 0.545611 | 5.4:-15870141 | None:intergenic |
| TTCCTGCTGCATTTGAAGGA+GGG | 0.549958 | 5.4:-15870140 | None:intergenic |
| ACTTGATCAAACACCGACAT+GGG | 0.550596 | 5.4:+15867459 | MS.gene72676:CDS |
| AGACTGCTAGGAAGAATATG+AGG | 0.552334 | 5.4:-15870582 | None:intergenic |
| TTTGTGAAAACTCTTCTCAA+GGG | 0.555200 | 5.4:-15867524 | None:intergenic |
| GCTCTAGAAAAGGTCAAGGC+TGG | 0.557508 | 5.4:+15869796 | MS.gene72676:CDS |
| AGAAACCAGATTAGCAAGAC+GGG | 0.560839 | 5.4:-15871050 | None:intergenic |
| GATACGTGGATGGAAGGAAT+GGG | 0.573280 | 5.4:+15870751 | MS.gene72676:intron |
| TCTGCAGATACGTGGATGGA+AGG | 0.581567 | 5.4:+15870745 | MS.gene72676:intron |
| AAAACACATGAAAGACTGCT+AGG | 0.587475 | 5.4:-15870594 | None:intergenic |
| CATGGTTATGAGTTCGCCAA+TGG | 0.587616 | 5.4:+15870791 | MS.gene72676:CDS |
| AGTCCATTCACAGATAAAAG+TGG | 0.595794 | 5.4:-15870544 | None:intergenic |
| TATCTACCTTCAAAAGACAC+TGG | 0.597529 | 5.4:-15870101 | None:intergenic |
| GAGAAACCAGATTAGCAAGA+CGG | 0.610291 | 5.4:-15871051 | None:intergenic |
| ACGTGGATGGAAGGAATGGG+AGG | 0.615112 | 5.4:+15870754 | MS.gene72676:CDS |
| AATGCTTCTTGGAAGACTCA+AGG | 0.618511 | 5.4:+15870630 | MS.gene72676:CDS |
| TGTTTCTGCAGATACGTGGA+TGG | 0.619092 | 5.4:+15870741 | MS.gene72676:intron |
| GAGGAAGAGACTTTAACTCA+TGG | 0.624104 | 5.4:+15870773 | MS.gene72676:CDS |
| CTCCTTCAAATGCAGCAGGA+AGG | 0.624540 | 5.4:+15870142 | MS.gene72676:CDS |
| TGTCCACATAAATATATAGG+TGG | 0.645928 | 5.4:+15870038 | MS.gene72676:CDS |
| TGAAGCTCTAGAAAAGGTCA+AGG | 0.656136 | 5.4:+15869792 | MS.gene72676:CDS |
| CTTGATCAAACACCGACATG+GGG | 0.671274 | 5.4:+15867460 | MS.gene72676:CDS |
| ACAGCAGCAACACCCCATGT+CGG | 0.719045 | 5.4:-15867472 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATATTAATAATAA+GGG | - | chr5.4:15869649-15869668 | None:intergenic | 0.0% |
| !! | TAATAATAATATTAATAATA+AGG | - | chr5.4:15869650-15869669 | None:intergenic | 0.0% |
| !! | TATTATTATTATTATTATTA+GGG | + | chr5.4:15869085-15869104 | MS.gene72676:intron | 0.0% |
| !! | TTATTATTATTATTATTATT+AGG | + | chr5.4:15869084-15869103 | MS.gene72676:intron | 0.0% |
| !! | TTAAAGTGAAAAATATTTAA+GGG | + | chr5.4:15868490-15868509 | MS.gene72676:intron | 10.0% |
| !!! | TTTAAAGTGAAAAATATTTA+AGG | + | chr5.4:15868489-15868508 | MS.gene72676:intron | 10.0% |
| !!! | TTTCACTTTAAATATATTTT+TGG | - | chr5.4:15868481-15868500 | None:intergenic | 10.0% |
| !!! | TTTTTTACTTTTTCATATTT+TGG | + | chr5.4:15868258-15868277 | MS.gene72676:intron | 10.0% |
| !! | TAATATGATGTCTAAAAAAT+TGG | + | chr5.4:15868515-15868534 | MS.gene72676:intron | 15.0% |
| !! | TACAAAAACAATAATATGTA+GGG | - | chr5.4:15869035-15869054 | None:intergenic | 15.0% |
| !! | TTACAAAAACAATAATATGT+AGG | - | chr5.4:15869036-15869055 | None:intergenic | 15.0% |
| !!! | AAAAGTCAAGAAATTTTTTA+GGG | - | chr5.4:15869209-15869228 | None:intergenic | 15.0% |
| !!! | AATTTTTTAGACATCATATT+AGG | - | chr5.4:15868516-15868535 | None:intergenic | 15.0% |
| !!! | ATATTTAACTTGAAAACTTT+TGG | - | chr5.4:15869237-15869256 | None:intergenic | 15.0% |
| !!! | TAAAAGTCAAGAAATTTTTT+AGG | - | chr5.4:15869210-15869229 | None:intergenic | 15.0% |
| !!! | TATTTAACTTGAAAACTTTT+GGG | - | chr5.4:15869236-15869255 | None:intergenic | 15.0% |
| !! | AGAAACAAAACTTTCATATA+AGG | - | chr5.4:15870728-15870747 | None:intergenic | 20.0% |
| !! | ATTTATATGATGTTAAGTGT+TGG | - | chr5.4:15868311-15868330 | None:intergenic | 20.0% |
| !! | ATTTCACTGTTATTAACTAT+TGG | + | chr5.4:15869957-15869976 | MS.gene72676:CDS | 20.0% |
| !! | GAAAAATGTCAAATATGTAT+TGG | - | chr5.4:15868627-15868646 | None:intergenic | 20.0% |
| !! | TATAATACACATCAAATAAG+TGG | + | chr5.4:15868791-15868810 | MS.gene72676:intron | 20.0% |
| !! | TATGAAATCAAATAGTAAAG+TGG | + | chr5.4:15870064-15870083 | MS.gene72676:CDS | 20.0% |
| !! | TTGAAACAAACCTAAAATAT+GGG | - | chr5.4:15868573-15868592 | None:intergenic | 20.0% |
| !!! | AAAGTCAAGAAATTTTTTAG+GGG | - | chr5.4:15869208-15869227 | None:intergenic | 20.0% |
| !!! | AAGTTGAATTTTTCTTTTAG+TGG | + | chr5.4:15869740-15869759 | MS.gene72676:intron | 20.0% |
| !!! | AATTTTGCTTTACTATTTCA+AGG | - | chr5.4:15868213-15868232 | None:intergenic | 20.0% |
| !!! | ACATTTAGATTAGAGTATTT+TGG | + | chr5.4:15868764-15868783 | MS.gene72676:intron | 20.0% |
| !!! | ATAAGGGTTAAATATGTTTT+TGG | - | chr5.4:15869633-15869652 | None:intergenic | 20.0% |
| !!! | ATTTAACTTGAAAACTTTTG+GGG | - | chr5.4:15869235-15869254 | None:intergenic | 20.0% |
| !!! | GAAAAGTTGGTATATTTATA+GGG | + | chr5.4:15869606-15869625 | MS.gene72676:intron | 20.0% |
| !!! | TAATTGTGTGATTTTATATG+AGG | + | chr5.4:15867938-15867957 | MS.gene72676:intron | 20.0% |
| !!! | TAATTTTTATGTCTCTTTGT+CGG | - | chr5.4:15867911-15867930 | None:intergenic | 20.0% |
| !!! | TCAATTTGAAATTAAATGCT+AGG | - | chr5.4:15867712-15867731 | None:intergenic | 20.0% |
| !!! | TCAATTTGTTAAAATCACAA+TGG | - | chr5.4:15870401-15870420 | None:intergenic | 20.0% |
| !!! | TCATTTTTAAATGAAAGAGA+AGG | - | chr5.4:15870187-15870206 | None:intergenic | 20.0% |
| !!! | TTTGAAACAAACCTAAAATA+TGG | - | chr5.4:15868574-15868593 | None:intergenic | 20.0% |
| !!! | TTTTGGATTAATCATTAAAG+TGG | + | chr5.4:15870309-15870328 | MS.gene72676:intron | 20.0% |
| ! | AAAAAGTTCATGTACTAATG+AGG | - | chr5.4:15868114-15868133 | None:intergenic | 25.0% |
| ! | AAAGAAAAATTCAACTTGTG+AGG | - | chr5.4:15869737-15869756 | None:intergenic | 25.0% |
| ! | AAATGAAAGAGAAGGAAAAA+AGG | - | chr5.4:15870179-15870198 | None:intergenic | 25.0% |
| ! | AGGTTGGAAAAAAAAATAGA+GGG | + | chr5.4:15869575-15869594 | MS.gene72676:intron | 25.0% |
| ! | ATAAACTGAGTTGTACTTAT+AGG | + | chr5.4:15869058-15869077 | MS.gene72676:intron | 25.0% |
| ! | ATAGACATTATAAGCATATG+AGG | - | chr5.4:15870916-15870935 | None:intergenic | 25.0% |
| ! | ATCAATGTTAAAACTATGTC+TGG | - | chr5.4:15867994-15868013 | None:intergenic | 25.0% |
| ! | ATTATTTATGAGAGACTTGT+AGG | + | chr5.4:15868731-15868750 | MS.gene72676:intron | 25.0% |
| ! | ATTTCGGCAAAAACTAAATT+TGG | + | chr5.4:15870355-15870374 | MS.gene72676:intron | 25.0% |
| ! | TATGATGTCTAAAAAATTGG+AGG | + | chr5.4:15868518-15868537 | MS.gene72676:intron | 25.0% |
| ! | TCAAGTTAAATATGATTGTG+TGG | + | chr5.4:15869244-15869263 | MS.gene72676:intron | 25.0% |
| ! | TCAATGTTAAAACTATGTCT+GGG | - | chr5.4:15867993-15868012 | None:intergenic | 25.0% |
| ! | TCCAAAAATAGTAAATCCTT+TGG | - | chr5.4:15869834-15869853 | None:intergenic | 25.0% |
| ! | TGAAACAAACCTAAAATATG+GGG | - | chr5.4:15868572-15868591 | None:intergenic | 25.0% |
| ! | TGTTGAAGATTTGATCTTAA+AGG | - | chr5.4:15868384-15868403 | None:intergenic | 25.0% |
| ! | TTACTAGTAGTAAAACAACA+TGG | - | chr5.4:15867686-15867705 | None:intergenic | 25.0% |
| ! | TTTGAACATACACATATTTG+AGG | + | chr5.4:15870428-15870447 | MS.gene72676:intron | 25.0% |
| ! | TTTGAACTCATATATACCAT+TGG | - | chr5.4:15870810-15870829 | None:intergenic | 25.0% |
| !! | ACCAAAGGATTTACTATTTT+TGG | + | chr5.4:15869830-15869849 | MS.gene72676:intron | 25.0% |
| !! | AGAGTTCATATAATTTTGAG+TGG | - | chr5.4:15869438-15869457 | None:intergenic | 25.0% |
| !! | CGATTTGAAACTCTTAAAAT+TGG | + | chr5.4:15869322-15869341 | MS.gene72676:intron | 25.0% |
| !! | GAATTTTTCTTTTAGTGGTT+AGG | + | chr5.4:15869745-15869764 | MS.gene72676:intron | 25.0% |
| !! | GTTGTTCCACTAAATATTTT+GGG | + | chr5.4:15867823-15867842 | MS.gene72676:intron | 25.0% |
| !! | TTAGGTTTGTTTCAAAACTT+TGG | + | chr5.4:15868578-15868597 | MS.gene72676:intron | 25.0% |
| !!! | CGAAAAGTTGGTATATTTAT+AGG | + | chr5.4:15869605-15869624 | MS.gene72676:intron | 25.0% |
| !!! | TAGTTGAATTTTTTTGACAC+AGG | + | chr5.4:15868870-15868889 | MS.gene72676:intron | 25.0% |
| !!! | TGATTTTATTTGAAGCATGT+AGG | + | chr5.4:15868021-15868040 | MS.gene72676:intron | 25.0% |
| !!! | TTTACAGAGTTGATGATTTT+AGG | + | chr5.4:15869930-15869949 | MS.gene72676:intron | 25.0% |
| AAACAATAATATGTAGGGAC+CGG | - | chr5.4:15869030-15869049 | None:intergenic | 30.0% | |
| AAGAAAGAAAATGAGTAGAC+AGG | - | chr5.4:15869401-15869420 | None:intergenic | 30.0% | |
| AAGAAGCTACTAGAATTGAT+GGG | - | chr5.4:15870494-15870513 | None:intergenic | 30.0% | |
| ACATTGAATCGCTGAAATTT+CGG | + | chr5.4:15870339-15870358 | MS.gene72676:intron | 30.0% | |
| AGAAAGAAAATGAGTAGACA+GGG | - | chr5.4:15869400-15869419 | None:intergenic | 30.0% | |
| AGTAGTAAAACAACATGGAA+GGG | - | chr5.4:15867681-15867700 | None:intergenic | 30.0% | |
| ATAGTAAAGTGGAACAAAGT+AGG | + | chr5.4:15870075-15870094 | MS.gene72676:CDS | 30.0% | |
| ATCCAAAATACACTTCTAGT+AGG | - | chr5.4:15870297-15870316 | None:intergenic | 30.0% | |
| ATCCAAGTTAACTGGTTATA+GGG | + | chr5.4:15870514-15870533 | MS.gene72676:intron | 30.0% | |
| ATTTCACTACCAATCAAGTT+AGG | + | chr5.4:15868428-15868447 | MS.gene72676:intron | 30.0% | |
| ATTTGTGAAAACTCTTCTCA+AGG | - | chr5.4:15867528-15867547 | None:intergenic | 30.0% | |
| CAAACAAACACCTAAAATGA+GGG | + | chr5.4:15869517-15869536 | MS.gene72676:intron | 30.0% | |
| CATTCTTAAATGTGAAGAAG+TGG | + | chr5.4:15868985-15869004 | MS.gene72676:intron | 30.0% | |
| CCATGTCCACATAAATATAT+AGG | + | chr5.4:15870035-15870054 | MS.gene72676:CDS | 30.0% | |
| CCTATATATTTATGTGGACA+TGG | - | chr5.4:15870038-15870057 | None:intergenic | 30.0% | |
| CTTTAAGCCTACAAATGTAT+TGG | - | chr5.4:15867858-15867877 | None:intergenic | 30.0% | |
| GAGGTTGGAAAAAAAAATAG+AGG | + | chr5.4:15869574-15869593 | MS.gene72676:intron | 30.0% | |
| GTCACTAAAACAATGACTTT+AGG | - | chr5.4:15868544-15868563 | None:intergenic | 30.0% | |
| GTGTCACGATTTATTCAAAT+CGG | - | chr5.4:15869293-15869312 | None:intergenic | 30.0% | |
| GTTAGGAAATAGAGAAAAGA+AGG | + | chr5.4:15869762-15869781 | MS.gene72676:CDS | 30.0% | |
| GTTTGTTTCAAAACTTTGGA+TGG | + | chr5.4:15868582-15868601 | MS.gene72676:intron | 30.0% | |
| TAAGAAGCTACTAGAATTGA+TGG | - | chr5.4:15870495-15870514 | None:intergenic | 30.0% | |
| TAGTAGTAAAACAACATGGA+AGG | - | chr5.4:15867682-15867701 | None:intergenic | 30.0% | |
| TATCCAAGTTAACTGGTTAT+AGG | + | chr5.4:15870513-15870532 | MS.gene72676:intron | 30.0% | |
| TCAAAAAATGTGGTTGCTTA+AGG | - | chr5.4:15868837-15868856 | None:intergenic | 30.0% | |
| TCACCACCTATATATTTATG+TGG | - | chr5.4:15870044-15870063 | None:intergenic | 30.0% | |
| TCCAAAATACACTTCTAGTA+GGG | - | chr5.4:15870296-15870315 | None:intergenic | 30.0% | |
| TGTCACGATTTATTCAAATC+GGG | - | chr5.4:15869292-15869311 | None:intergenic | 30.0% | |
| TGTCCACATAAATATATAGG+TGG | + | chr5.4:15870038-15870057 | MS.gene72676:CDS | 30.0% | |
| TGTTACAATTTCTGTGCATA+TGG | - | chr5.4:15869364-15869383 | None:intergenic | 30.0% | |
| TTATCATAGACTTGAAGAGT+TGG | - | chr5.4:15869864-15869883 | None:intergenic | 30.0% | |
| TTTGTGAAAACTCTTCTCAA+GGG | - | chr5.4:15867527-15867546 | None:intergenic | 30.0% | |
| ! | AAGTGGTGATAGAAAACTTT+TGG | + | chr5.4:15869545-15869564 | MS.gene72676:intron | 30.0% |
| ! | AGTGGTGATAGAAAACTTTT+GGG | + | chr5.4:15869546-15869565 | MS.gene72676:intron | 30.0% |
| ! | ATTTTTGTGCCTAACTTGAT+TGG | - | chr5.4:15868440-15868459 | None:intergenic | 30.0% |
| ! | CAGCTTTGTGAAACAATTTA+AGG | - | chr5.4:15870235-15870254 | None:intergenic | 30.0% |
| ! | CTGGTAAGAATTTTTACCAA+AGG | + | chr5.4:15869815-15869834 | MS.gene72676:intron | 30.0% |
| ! | GAGAAGAGTTTTCACAAATT+AGG | + | chr5.4:15867529-15867548 | MS.gene72676:CDS | 30.0% |
| ! | GAGTTTTCACAAATTAGGAA+CGG | + | chr5.4:15867534-15867553 | MS.gene72676:CDS | 30.0% |
| ! | GGTTGTTCCACTAAATATTT+TGG | + | chr5.4:15867822-15867841 | MS.gene72676:intron | 30.0% |
| ! | TTGTCAATTAGTTTAGTGCT+TGG | + | chr5.4:15868955-15868974 | MS.gene72676:intron | 30.0% |
| !! | AACTTACTACTAGAAGTACT+TGG | + | chr5.4:15870255-15870274 | MS.gene72676:intron | 30.0% |
| !! | CAACACACTTAATTTTCAAG+AGG | - | chr5.4:15868061-15868080 | None:intergenic | 30.0% |
| !! | TCATACAAGTTTTTGGACTA+GGG | + | chr5.4:15871001-15871020 | MS.gene72676:CDS | 30.0% |
| !! | TTCCACTAAATATTTTGGGA+GGG | + | chr5.4:15867827-15867846 | MS.gene72676:intron | 30.0% |
| !!! | AACCACATTTTTTGAATGGA+GGG | + | chr5.4:15868842-15868861 | MS.gene72676:intron | 30.0% |
| !!! | AAGCAACCACATTTTTTGAA+TGG | + | chr5.4:15868838-15868857 | MS.gene72676:intron | 30.0% |
| AAAACACATGAAAGACTGCT+AGG | - | chr5.4:15870597-15870616 | None:intergenic | 35.0% | |
| AACAAACCTAAAATATGGGG+AGG | - | chr5.4:15868569-15868588 | None:intergenic | 35.0% | |
| AACAATAATATGTAGGGACC+GGG | - | chr5.4:15869029-15869048 | None:intergenic | 35.0% | |
| AGAATATGAGGATGTGTAAC+TGG | - | chr5.4:15870573-15870592 | None:intergenic | 35.0% | |
| AGCTTCTTATCCAAGTTAAC+TGG | + | chr5.4:15870506-15870525 | MS.gene72676:intron | 35.0% | |
| AGTCCATTCACAGATAAAAG+TGG | - | chr5.4:15870547-15870566 | None:intergenic | 35.0% | |
| ATGCTAGTGCTACATTTGAA+AGG | - | chr5.4:15868649-15868668 | None:intergenic | 35.0% | |
| CCAAACAAACACCTAAAATG+AGG | + | chr5.4:15869516-15869535 | MS.gene72676:intron | 35.0% | |
| CTAAAATGAGGGATCAAAAG+TGG | + | chr5.4:15869528-15869547 | MS.gene72676:intron | 35.0% | |
| GAGAAGGAAAAAAGGAAACA+TGG | - | chr5.4:15870171-15870190 | None:intergenic | 35.0% | |
| GTCACGATTTATTCAAATCG+GGG | - | chr5.4:15869291-15869310 | None:intergenic | 35.0% | |
| TATCTACCTTCAAAAGACAC+TGG | - | chr5.4:15870104-15870123 | None:intergenic | 35.0% | |
| TTCCCTCCATTCAAAAAATG+TGG | - | chr5.4:15868847-15868866 | None:intergenic | 35.0% | |
| ! | ATAATTTGTGATCCGAAACC+CGG | + | chr5.4:15869008-15869027 | MS.gene72676:intron | 35.0% |
| ! | CACTTTTGATCCCTCATTTT+AGG | - | chr5.4:15869530-15869549 | None:intergenic | 35.0% |
| ! | GTGGTGATAGAAAACTTTTG+GGG | + | chr5.4:15869547-15869566 | MS.gene72676:intron | 35.0% |
| ! | TCAGAGCTCATACAAGTTTT+TGG | + | chr5.4:15870994-15871013 | MS.gene72676:CDS | 35.0% |
| !! | CAAGACAATTTGTTATGCCA+CGG | - | chr5.4:15867747-15867766 | None:intergenic | 35.0% |
| !! | CCTCATTTTAGGTGTTTGTT+TGG | - | chr5.4:15869519-15869538 | None:intergenic | 35.0% |
| !! | CTCATACAAGTTTTTGGACT+AGG | + | chr5.4:15871000-15871019 | MS.gene72676:CDS | 35.0% |
| !! | GAACCACTTTTATCTGTGAA+TGG | + | chr5.4:15870541-15870560 | MS.gene72676:CDS | 35.0% |
| !! | GTTCCACTAAATATTTTGGG+AGG | + | chr5.4:15867826-15867845 | MS.gene72676:intron | 35.0% |
| !! | TCACGTTTTGTTGGAAATCA+AGG | - | chr5.4:15869481-15869500 | None:intergenic | 35.0% |
| !!! | CAACCACATTTTTTGAATGG+AGG | + | chr5.4:15868841-15868860 | MS.gene72676:intron | 35.0% |
| AAAACTCTTCTCAAGGGCTA+TGG | - | chr5.4:15867521-15867540 | None:intergenic | 40.0% | |
| AATGCTTCTTGGAAGACTCA+AGG | + | chr5.4:15870630-15870649 | MS.gene72676:CDS | 40.0% | |
| ACTTGATCAAACACCGACAT+GGG | + | chr5.4:15867459-15867478 | MS.gene72676:CDS | 40.0% | |
| AGAAACCAGATTAGCAAGAC+GGG | - | chr5.4:15871053-15871072 | None:intergenic | 40.0% | |
| AGACTGCTAGGAAGAATATG+AGG | - | chr5.4:15870585-15870604 | None:intergenic | 40.0% | |
| AGCCTACAAATGTATTGGAC+CGG | - | chr5.4:15867853-15867872 | None:intergenic | 40.0% | |
| GAGAAACCAGATTAGCAAGA+CGG | - | chr5.4:15871054-15871073 | None:intergenic | 40.0% | |
| GAGGAAGAGACTTTAACTCA+TGG | + | chr5.4:15870773-15870792 | MS.gene72676:CDS | 40.0% | |
| GAGGGACTAAAACGAAAAGT+TGG | + | chr5.4:15869593-15869612 | MS.gene72676:intron | 40.0% | |
| GTCCCTATAACCAGTTAACT+TGG | - | chr5.4:15870519-15870538 | None:intergenic | 40.0% | |
| TAGGTGTTTGTTTGGATGTG+CGG | - | chr5.4:15869511-15869530 | None:intergenic | 40.0% | |
| ! | AGGAAACCAGTGTCTTTTGA+AGG | + | chr5.4:15870095-15870114 | MS.gene72676:CDS | 40.0% |
| ! | ATTGAAGTTTTCTCTTGCCG+TGG | + | chr5.4:15867727-15867746 | MS.gene72676:intron | 40.0% |
| ! | TTTGGAGCTTCGCAAAATCA+CGG | + | chr5.4:15870373-15870392 | MS.gene72676:intron | 40.0% |
| !! | ACTAAATATTTTGGGAGGGC+CGG | + | chr5.4:15867831-15867850 | MS.gene72676:intron | 40.0% |
| !! | AGAAAACTTTTGGGGACTAG+AGG | + | chr5.4:15869555-15869574 | MS.gene72676:intron | 40.0% |
| !! | GCATGTAGGACATTGATTTG+TGG | + | chr5.4:15868035-15868054 | MS.gene72676:intron | 40.0% |
| !! | GCCCTACTAGAAGTGTATTT+TGG | + | chr5.4:15870292-15870311 | MS.gene72676:intron | 40.0% |
| !! | TCTGCTTGAAGCTCTAGAAA+AGG | + | chr5.4:15869786-15869805 | MS.gene72676:CDS | 40.0% |
| !! | TGAAGCTCTAGAAAAGGTCA+AGG | + | chr5.4:15869792-15869811 | MS.gene72676:CDS | 40.0% |
| !!! | GTTTTGTTTCTGCAGATACG+TGG | + | chr5.4:15870737-15870756 | MS.gene72676:intron | 40.0% |
| AATATGTAGGGACCGGGTTT+CGG | - | chr5.4:15869023-15869042 | None:intergenic | 45.0% | |
| AGATACGTGGATGGAAGGAA+TGG | + | chr5.4:15870750-15870769 | MS.gene72676:intron | 45.0% | |
| AGTGCTGTCACAATGCTTCT+TGG | + | chr5.4:15870619-15870638 | MS.gene72676:CDS | 45.0% | |
| CACTTGATCAAACACCGACA+TGG | + | chr5.4:15867458-15867477 | MS.gene72676:CDS | 45.0% | |
| CATGGTTATGAGTTCGCCAA+TGG | + | chr5.4:15870791-15870810 | MS.gene72676:CDS | 45.0% | |
| CTGCAACTGCAAGTGATAGT+AGG | + | chr5.4:15867422-15867441 | MS.gene72676:CDS | 45.0% | |
| CTTGATCAAACACCGACATG+GGG | + | chr5.4:15867460-15867479 | MS.gene72676:CDS | 45.0% | |
| GACGGGACGCACAATATAAA+AGG | - | chr5.4:15871036-15871055 | None:intergenic | 45.0% | |
| GATACGTGGATGGAAGGAAT+GGG | + | chr5.4:15870751-15870770 | MS.gene72676:intron | 45.0% | |
| GGCCCTCCCAAAATATTTAG+TGG | - | chr5.4:15867832-15867851 | None:intergenic | 45.0% | |
| GTGCAGATGCTGCAAAATTC+AGG | + | chr5.4:15870949-15870968 | MS.gene72676:intron | 45.0% | |
| TACCTTCCTGCTGCATTTGA+AGG | - | chr5.4:15870147-15870166 | None:intergenic | 45.0% | |
| TTCCTGCTGCATTTGAAGGA+GGG | - | chr5.4:15870143-15870162 | None:intergenic | 45.0% | |
| ! | TGACAGCCTCCCCATATTTT+AGG | + | chr5.4:15868560-15868579 | MS.gene72676:intron | 45.0% |
| ! | TGTTTCTGCAGATACGTGGA+TGG | + | chr5.4:15870741-15870760 | MS.gene72676:intron | 45.0% |
| !! | AACTTTTGGGGACTAGAGGT+TGG | + | chr5.4:15869559-15869578 | MS.gene72676:intron | 45.0% |
| !! | AATTATTATTATGAAATAAA+GGG | - | chr5.4:15867800-15867819 | None:intergenic | 5.0% |
| !! | TAATTATTATTATGAAATAA+AGG | - | chr5.4:15867801-15867820 | None:intergenic | 5.0% |
| !! | TTATTTCATAATAATAATTA+TGG | + | chr5.4:15867801-15867820 | MS.gene72676:intron | 5.0% |
| CTCCTTCAAATGCAGCAGGA+AGG | + | chr5.4:15870142-15870161 | MS.gene72676:CDS | 50.0% | |
| CTTCCTGCTGCATTTGAAGG+AGG | - | chr5.4:15870144-15870163 | None:intergenic | 50.0% | |
| GGCCGGTCCAATACATTTGT+AGG | + | chr5.4:15867848-15867867 | MS.gene72676:intron | 50.0% | |
| TCGGGGCACAATTTGAAGAG+CGG | - | chr5.4:15869274-15869293 | None:intergenic | 50.0% | |
| TCTGCAGATACGTGGATGGA+AGG | + | chr5.4:15870745-15870764 | MS.gene72676:intron | 50.0% | |
| ! | GGCTGCAACTCACGTTTTGT+TGG | - | chr5.4:15869490-15869509 | None:intergenic | 50.0% |
| !! | GCTCTAGAAAAGGTCAAGGC+TGG | + | chr5.4:15869796-15869815 | MS.gene72676:CDS | 50.0% |
| ACAGCAGCAACACCCCATGT+CGG | - | chr5.4:15867475-15867494 | None:intergenic | 55.0% | |
| ACGTGGATGGAAGGAATGGG+AGG | + | chr5.4:15870754-15870773 | MS.gene72676:CDS | 55.0% | |
| CTCCCTCCTTCAAATGCAGC+AGG | + | chr5.4:15870138-15870157 | MS.gene72676:CDS | 55.0% | |
| TGCGTCCCGTCTTGCTAATC+TGG | + | chr5.4:15871045-15871064 | MS.gene72676:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 15867418 | 15871085 | 15867418 | ID=MS.gene72676 |
| chr5.4 | mRNA | 15867418 | 15871085 | 15867418 | ID=MS.gene72676.t1;Parent=MS.gene72676 |
| chr5.4 | exon | 15867418 | 15867555 | 15867418 | ID=MS.gene72676.t1.exon1;Parent=MS.gene72676.t1 |
| chr5.4 | CDS | 15867418 | 15867555 | 15867418 | ID=cds.MS.gene72676.t1;Parent=MS.gene72676.t1 |
| chr5.4 | exon | 15869760 | 15869817 | 15869760 | ID=MS.gene72676.t1.exon2;Parent=MS.gene72676.t1 |
| chr5.4 | CDS | 15869760 | 15869817 | 15869760 | ID=cds.MS.gene72676.t1;Parent=MS.gene72676.t1 |
| chr5.4 | exon | 15869937 | 15870163 | 15869937 | ID=MS.gene72676.t1.exon3;Parent=MS.gene72676.t1 |
| chr5.4 | CDS | 15869937 | 15870163 | 15869937 | ID=cds.MS.gene72676.t1;Parent=MS.gene72676.t1 |
| chr5.4 | exon | 15870535 | 15870651 | 15870535 | ID=MS.gene72676.t1.exon4;Parent=MS.gene72676.t1 |
| chr5.4 | CDS | 15870535 | 15870651 | 15870535 | ID=cds.MS.gene72676.t1;Parent=MS.gene72676.t1 |
| chr5.4 | exon | 15870752 | 15870812 | 15870752 | ID=MS.gene72676.t1.exon5;Parent=MS.gene72676.t1 |
| chr5.4 | CDS | 15870752 | 15870812 | 15870752 | ID=cds.MS.gene72676.t1;Parent=MS.gene72676.t1 |
| chr5.4 | exon | 15870955 | 15871085 | 15870955 | ID=MS.gene72676.t1.exon6;Parent=MS.gene72676.t1 |
| chr5.4 | CDS | 15870955 | 15871085 | 15870955 | ID=cds.MS.gene72676.t1;Parent=MS.gene72676.t1 |
| Gene Sequence |
| Protein sequence |
