Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73898.t1 | AES71719.2 | 95.5 | 353 | 12 | 1 | 1 | 353 | 1 | 349 | 5.00E-168 | 600.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73898.t1 | Q6L8G0 | 55.5 | 348 | 151 | 3 | 8 | 353 | 8 | 353 | 1.4e-97 | 357.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73898.t1 | G7J822 | 95.5 | 353 | 12 | 1 | 1 | 353 | 1 | 349 | 3.6e-168 | 600.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045723 | MS.gene73898 | PPI |
| MS.gene066193 | MS.gene73898 | PPI |
| MS.gene56999 | MS.gene73898 | PPI |
| MS.gene54167 | MS.gene73898 | PPI |
| MS.gene009810 | MS.gene73898 | PPI |
| MS.gene038972 | MS.gene73898 | PPI |
| MS.gene50197 | MS.gene73898 | PPI |
| MS.gene62494 | MS.gene73898 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73898.t1 | MTR_3g082050 | 95.751 | 353 | 11 | 1 | 1 | 353 | 1 | 349 | 0.0 | 687 |
| MS.gene73898.t1 | MTR_3g082050 | 94.269 | 349 | 20 | 0 | 5 | 353 | 29 | 377 | 0.0 | 614 |
| MS.gene73898.t1 | MTR_3g082050 | 97.476 | 317 | 8 | 0 | 37 | 353 | 56 | 372 | 0.0 | 602 |
| MS.gene73898.t1 | MTR_3g081640 | 84.488 | 361 | 48 | 3 | 1 | 353 | 1 | 361 | 0.0 | 596 |
| MS.gene73898.t1 | MTR_3g081580 | 84.078 | 358 | 52 | 2 | 1 | 353 | 1 | 358 | 0.0 | 588 |
| MS.gene73898.t1 | MTR_3g081690 | 91.738 | 351 | 18 | 2 | 1 | 351 | 1 | 340 | 0.0 | 580 |
| MS.gene73898.t1 | MTR_3g081690 | 93.016 | 315 | 15 | 1 | 37 | 351 | 56 | 363 | 0.0 | 557 |
| MS.gene73898.t1 | MTR_2g064310 | 59.659 | 352 | 133 | 5 | 9 | 353 | 9 | 358 | 7.37e-146 | 416 |
| MS.gene73898.t1 | MTR_3g081690 | 88.362 | 232 | 20 | 1 | 120 | 351 | 25 | 249 | 2.24e-131 | 375 |
| MS.gene73898.t1 | MTR_6g007687 | 51.884 | 345 | 153 | 4 | 10 | 350 | 9 | 344 | 5.62e-116 | 340 |
| MS.gene73898.t1 | MTR_3g081690 | 89.320 | 206 | 15 | 1 | 146 | 351 | 7 | 205 | 7.64e-115 | 332 |
| MS.gene73898.t1 | MTR_3g081690 | 89.806 | 206 | 14 | 1 | 146 | 351 | 29 | 227 | 1.63e-114 | 332 |
| MS.gene73898.t1 | MTR_4g083570 | 50.435 | 345 | 166 | 2 | 9 | 353 | 11 | 350 | 1.18e-113 | 334 |
| MS.gene73898.t1 | MTR_8g105030 | 50.733 | 341 | 162 | 3 | 11 | 347 | 9 | 347 | 1.62e-113 | 335 |
| MS.gene73898.t1 | MTR_3g104400 | 48.476 | 361 | 150 | 4 | 28 | 353 | 6 | 365 | 4.01e-105 | 313 |
| MS.gene73898.t1 | MTR_1g016120 | 46.721 | 366 | 154 | 5 | 26 | 353 | 12 | 374 | 9.56e-97 | 292 |
| MS.gene73898.t1 | MTR_5g071990 | 41.593 | 339 | 168 | 8 | 24 | 353 | 1 | 318 | 4.72e-76 | 237 |
| MS.gene73898.t1 | MTR_3g081630 | 70.769 | 65 | 8 | 2 | 77 | 132 | 20 | 82 | 6.12e-22 | 90.5 |
| MS.gene73898.t1 | MTR_4g006710 | 44.318 | 88 | 48 | 1 | 37 | 124 | 26 | 112 | 2.07e-15 | 72.0 |
| MS.gene73898.t1 | MTR_3g073950 | 29.252 | 147 | 49 | 3 | 1 | 147 | 1 | 92 | 1.86e-12 | 63.9 |
| MS.gene73898.t1 | MTR_2g097580 | 23.077 | 325 | 208 | 12 | 37 | 352 | 44 | 335 | 4.41e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73898.t1 | AT3G12750 | 54.648 | 355 | 151 | 4 | 3 | 353 | 7 | 355 | 2.00e-135 | 390 |
| MS.gene73898.t1 | AT1G05300 | 58.084 | 334 | 132 | 5 | 26 | 353 | 29 | 360 | 1.09e-134 | 388 |
| MS.gene73898.t1 | AT2G32270 | 54.875 | 359 | 129 | 6 | 5 | 353 | 4 | 339 | 4.74e-127 | 368 |
| MS.gene73898.t1 | AT1G31260 | 51.506 | 332 | 156 | 2 | 27 | 353 | 33 | 364 | 9.83e-117 | 343 |
| MS.gene73898.t1 | AT5G62160 | 49.148 | 352 | 160 | 6 | 13 | 353 | 12 | 355 | 3.56e-109 | 323 |
| MS.gene73898.t1 | AT2G04032 | 48.649 | 333 | 164 | 4 | 26 | 353 | 35 | 365 | 3.48e-106 | 316 |
| MS.gene73898.t1 | AT4G19690 | 48.476 | 328 | 155 | 3 | 27 | 353 | 33 | 347 | 1.58e-102 | 306 |
| MS.gene73898.t1 | AT1G10970 | 45.753 | 365 | 159 | 3 | 28 | 353 | 10 | 374 | 2.30e-99 | 299 |
| MS.gene73898.t1 | AT1G10970 | 45.753 | 365 | 159 | 3 | 28 | 353 | 10 | 374 | 2.30e-99 | 299 |
| MS.gene73898.t1 | AT1G60960 | 43.325 | 397 | 166 | 5 | 16 | 353 | 19 | 415 | 1.35e-97 | 296 |
| MS.gene73898.t1 | AT1G60960 | 43.325 | 397 | 166 | 5 | 16 | 353 | 29 | 425 | 1.85e-97 | 295 |
| MS.gene73898.t1 | AT4G19680 | 44.413 | 349 | 185 | 6 | 9 | 353 | 7 | 350 | 1.48e-95 | 288 |
| MS.gene73898.t1 | AT4G33020 | 41.240 | 371 | 168 | 5 | 29 | 353 | 25 | 391 | 2.88e-86 | 266 |
| MS.gene73898.t1 | AT4G33020 | 41.092 | 348 | 157 | 4 | 50 | 353 | 1 | 344 | 1.77e-80 | 249 |
| MS.gene73898.t1 | AT1G05300 | 53.138 | 239 | 104 | 5 | 26 | 258 | 29 | 265 | 5.04e-79 | 243 |
| MS.gene73898.t1 | AT2G30080 | 42.169 | 332 | 169 | 7 | 37 | 353 | 18 | 341 | 3.45e-75 | 236 |
| MS.gene73898.t1 | AT4G19680 | 42.000 | 250 | 136 | 6 | 9 | 254 | 7 | 251 | 1.49e-59 | 192 |
| MS.gene73898.t1 | AT4G19690 | 39.227 | 181 | 90 | 4 | 27 | 203 | 33 | 197 | 2.54e-33 | 123 |
| MS.gene73898.t1 | AT1G60960 | 45.270 | 148 | 76 | 1 | 16 | 158 | 29 | 176 | 9.11e-32 | 121 |
| MS.gene73898.t1 | AT1G55910 | 21.856 | 334 | 214 | 12 | 31 | 352 | 26 | 324 | 8.04e-11 | 62.8 |
Find 79 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGAACCATTATTCTAAA+AGG | 0.154778 | 3.2:+71479965 | MS.gene73898:CDS |
| ATGTCAAACTCTTTGTTCTT+TGG | 0.233067 | 3.2:+71479548 | MS.gene73898:CDS |
| TGAAGATTCCTTCAACAATA+AGG | 0.241739 | 3.2:-71481512 | None:intergenic |
| ATTTGCTGCCGGTGTGATTT+TGG | 0.254157 | 3.2:+71479786 | MS.gene73898:CDS |
| TGCACATGGTCATATTTCTT+TGG | 0.273397 | 3.2:+71480074 | MS.gene73898:CDS |
| TGTTCTTCATTCTCCACGTC+TGG | 0.292100 | 3.2:-71480018 | None:intergenic |
| AGCTGGGATCTTAATCTATA+TGG | 0.309946 | 3.2:+71481545 | MS.gene73898:CDS |
| AAGAATGGTAGGCTTCAATT+TGG | 0.323201 | 3.2:+71481615 | MS.gene73898:CDS |
| GGTGTTTGTCTCCCACTTCT+TGG | 0.328296 | 3.2:+71479709 | MS.gene73898:CDS |
| TTGTTTAAACGAACATCCTT+GGG | 0.333916 | 3.2:+71479861 | MS.gene73898:CDS |
| CATCAGAACTTCTTCGTCAT+AGG | 0.342133 | 3.2:+71480103 | MS.gene73898:CDS |
| CACCGCTATGGGGACTCTTA+TGG | 0.349455 | 3.2:+71479918 | MS.gene73898:CDS |
| TCCTAGTAGAAGAGATATAT+TGG | 0.367561 | 3.2:-71481640 | None:intergenic |
| ATCTTCAATGCAGCTTCAGC+TGG | 0.368873 | 3.2:+71481528 | MS.gene73898:CDS |
| CCAACTGCCCTTATTGTTGA+AGG | 0.374782 | 3.2:+71481504 | MS.gene73898:CDS |
| GAAGATTCCTTCAACAATAA+GGG | 0.377298 | 3.2:-71481511 | None:intergenic |
| TTCTTTGAAGGCATGGGACT+TGG | 0.380444 | 3.2:+71480468 | MS.gene73898:CDS |
| TTCTAAAAGGGCACCGGCAC+AGG | 0.381340 | 3.2:+71479978 | MS.gene73898:CDS |
| AACACCTAGCTAAGCCCATT+TGG | 0.382789 | 3.2:-71481685 | None:intergenic |
| ATTGTTCACTCTGTTATCAT+AGG | 0.385296 | 3.2:+71480375 | MS.gene73898:CDS |
| GTATGTCTCTTCTAGCCAAA+TGG | 0.386544 | 3.2:+71481670 | MS.gene73898:CDS |
| CTTGTTTAAACGAACATCCT+TGG | 0.412853 | 3.2:+71479860 | MS.gene73898:CDS |
| GTAGGAATAGGAATTGGCTT+AGG | 0.413766 | 3.2:+71481453 | MS.gene73898:CDS |
| TAATCATAGGTGTTGGAGTT+GGG | 0.414004 | 3.2:+71480348 | MS.gene73898:intron |
| GTTCTTCATTCTCCACGTCT+GGG | 0.415278 | 3.2:-71480017 | None:intergenic |
| TTGACTACTCCAGTAGGAAT+AGG | 0.425117 | 3.2:+71481441 | MS.gene73898:CDS |
| CACTCTGCGGCTATTAGAGT+TGG | 0.430490 | 3.2:-71479592 | None:intergenic |
| TATGTCTCTTCTAGCCAAAT+GGG | 0.432359 | 3.2:+71481671 | MS.gene73898:CDS |
| GCCTGACTTTCAACCTGTGC+CGG | 0.435020 | 3.2:-71479991 | None:intergenic |
| TCAGAACCATTATTCTAAAA+GGG | 0.435286 | 3.2:+71479966 | MS.gene73898:CDS |
| ACCGGCACAGGTTGAAAGTC+AGG | 0.444330 | 3.2:+71479990 | MS.gene73898:CDS |
| AAGCCAATTCCTATTCCTAC+TGG | 0.450773 | 3.2:-71481450 | None:intergenic |
| GTAAGATTCTCAAAAGCATC+AGG | 0.451833 | 3.2:-71479832 | None:intergenic |
| CATCAGTTCTTTGAAGGCAT+GGG | 0.453138 | 3.2:+71480462 | MS.gene73898:CDS |
| TCATCAGTTCTTTGAAGGCA+TGG | 0.458960 | 3.2:+71480461 | MS.gene73898:CDS |
| GTGGCTATGTGCACCGCTAT+GGG | 0.473126 | 3.2:+71479907 | MS.gene73898:CDS |
| ACTCCAGTAGGAATAGGAAT+TGG | 0.474881 | 3.2:+71481447 | MS.gene73898:CDS |
| TGTGGCTATGTGCACCGCTA+TGG | 0.496742 | 3.2:+71479906 | MS.gene73898:CDS |
| ATCAGAACTTCTTCGTCATA+GGG | 0.504567 | 3.2:+71480104 | MS.gene73898:CDS |
| AGGAAGCACATGAATGAAAC+CGG | 0.505115 | 3.2:-71479812 | None:intergenic |
| ATATTAGTTGCAAGTGCAAT+CGG | 0.511165 | 3.2:+71479688 | MS.gene73898:CDS |
| GTGACGAAGAAGATGAAGAA+AGG | 0.513450 | 3.2:+71479620 | MS.gene73898:CDS |
| ACTTCTTGGCAAAGTGATAC+CGG | 0.514499 | 3.2:+71479723 | MS.gene73898:CDS |
| TAGGAATAGGAATTGGCTTA+GGG | 0.516025 | 3.2:+71481454 | MS.gene73898:CDS |
| GAGTCTATCAATTACAGTCA+TGG | 0.527216 | 3.2:+71481404 | MS.gene73898:CDS |
| ACTCTGCGGCTATTAGAGTT+GGG | 0.527671 | 3.2:-71479591 | None:intergenic |
| TTAATCATAGGTGTTGGAGT+TGG | 0.528223 | 3.2:+71480347 | MS.gene73898:intron |
| TGACGAAGAAGATGAAGAAA+GGG | 0.528446 | 3.2:+71479621 | MS.gene73898:CDS |
| AGTCTATCAATTACAGTCAT+GGG | 0.530284 | 3.2:+71481405 | MS.gene73898:CDS |
| TCGTCATAGGGTCATATCAC+AGG | 0.536885 | 3.2:+71480116 | MS.gene73898:CDS |
| ATCATCAAAGCATTTGCTGC+CGG | 0.538366 | 3.2:+71479775 | MS.gene73898:CDS |
| ATATCTCTTCTACTAGGAGC+TGG | 0.544358 | 3.2:+71481645 | MS.gene73898:CDS |
| TCCTAAAACTGTAAGACCAT+TGG | 0.549462 | 3.2:+71480422 | MS.gene73898:CDS |
| CCTTCAACAATAAGGGCAGT+TGG | 0.549952 | 3.2:-71481504 | None:intergenic |
| GTTATCATAGGAATTTCTCT+AGG | 0.552566 | 3.2:+71480387 | MS.gene73898:CDS |
| ATAGCCACAAAACCAGTGAA+TGG | 0.552941 | 3.2:-71479892 | None:intergenic |
| GGTATCACTTTGCCAAGAAG+TGG | 0.555619 | 3.2:-71479721 | None:intergenic |
| AATCCAAGGATGCAAAAGAA+TGG | 0.566760 | 3.2:+71481600 | MS.gene73898:CDS |
| CAAGGATGCAAAAGAATGGT+AGG | 0.567010 | 3.2:+71481604 | MS.gene73898:CDS |
| CTGCTGACTTCATGAATCCA+AGG | 0.568200 | 3.2:+71481586 | MS.gene73898:CDS |
| TCCAATATATCTCTTCTACT+AGG | 0.568292 | 3.2:+71481639 | MS.gene73898:CDS |
| TTCTTCATTCTCCACGTCTG+GGG | 0.569832 | 3.2:-71480016 | None:intergenic |
| TGGCTATGTGCACCGCTATG+GGG | 0.578981 | 3.2:+71479908 | MS.gene73898:CDS |
| ACTTGGAAGTTGTATAACTC+AGG | 0.582307 | 3.2:+71480485 | MS.gene73898:CDS |
| TCTTCAATGCAGCTTCAGCT+GGG | 0.586228 | 3.2:+71481529 | MS.gene73898:CDS |
| CAAGGATGTTCGTTTAAACA+AGG | 0.587088 | 3.2:-71479859 | None:intergenic |
| TTTGCTTTGACTACTCCAGT+AGG | 0.595259 | 3.2:+71481435 | MS.gene73898:CDS |
| CCATTATTCTAAAAGGGCAC+CGG | 0.607376 | 3.2:+71479972 | MS.gene73898:CDS |
| AAAGTCAACGCAGCTACCAA+TGG | 0.608393 | 3.2:-71480438 | None:intergenic |
| AAGTCAGGCAACCCCAGACG+TGG | 0.622416 | 3.2:+71480005 | MS.gene73898:CDS |
| TTGGGACTATACAAAGAATG+AGG | 0.625008 | 3.2:-71479573 | None:intergenic |
| TGTTTAAACGAACATCCTTG+GGG | 0.637545 | 3.2:+71479862 | MS.gene73898:CDS |
| GTATCACTTTGCCAAGAAGT+GGG | 0.638859 | 3.2:-71479720 | None:intergenic |
| TTCGTCACATGTGCACTCTG+CGG | 0.662154 | 3.2:-71479605 | None:intergenic |
| ATGGTTCTGAAAATAAGCAG+TGG | 0.668019 | 3.2:-71479953 | None:intergenic |
| GTGAATGGAAAATCACCCCA+AGG | 0.670551 | 3.2:-71479877 | None:intergenic |
| ACCGGTTGCCAAAATCACAC+CGG | 0.684552 | 3.2:-71479794 | None:intergenic |
| GCATCACATAGTCATGCACA+TGG | 0.717102 | 3.2:+71480060 | MS.gene73898:CDS |
| AACCATAAGAGTCCCCATAG+CGG | 0.744809 | 3.2:-71479920 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAAATATATCTTTTTC+AGG | - | chr3.2:71479757-71479776 | None:intergenic | 10.0% |
| !!! | TAAAAAATATATCTTTTTCA+GGG | - | chr3.2:71479756-71479775 | None:intergenic | 10.0% |
| !!! | TGAAATTTTTTATTTGTATA+TGG | - | chr3.2:71481245-71481264 | None:intergenic | 10.0% |
| !! | ATTCTTCTTTCTTAATTAAT+CGG | + | chr3.2:71481052-71481071 | MS.gene73898:intron | 15.0% |
| !!! | TTTTTTTTTATAATAGTGAC+CGG | + | chr3.2:71480637-71480656 | MS.gene73898:intron | 15.0% |
| !!! | TTTTTTTTTGAGTTAATCAT+AGG | + | chr3.2:71480335-71480354 | MS.gene73898:intron | 15.0% |
| !! | AGTTCAACATTTATATTTCA+AGG | - | chr3.2:71480284-71480303 | None:intergenic | 20.0% |
| !! | GAATTGTGAAATATTAACTA+TGG | + | chr3.2:71480747-71480766 | MS.gene73898:intron | 20.0% |
| !! | TTTATTTGTATATGGAGATT+CGG | - | chr3.2:71481237-71481256 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTATAATAGTGAC+CGG | - | chr3.2:71480528-71480547 | None:intergenic | 20.0% |
| !!! | TTTTTTTTATAATAGTGACC+GGG | + | chr3.2:71480638-71480657 | MS.gene73898:intron | 20.0% |
| ! | AACATATACAACAACAAACA+AGG | - | chr3.2:71480926-71480945 | None:intergenic | 25.0% |
| ! | AAGAATGCATACTAAAAAAG+CGG | - | chr3.2:71481038-71481057 | None:intergenic | 25.0% |
| ! | AATGATTGCACTTTCAATTA+AGG | - | chr3.2:71481369-71481388 | None:intergenic | 25.0% |
| ! | ACATATACAACAACAAACAA+GGG | - | chr3.2:71480925-71480944 | None:intergenic | 25.0% |
| ! | CAGGATTTCAAATATAAGTA+CGG | + | chr3.2:71480772-71480791 | MS.gene73898:intron | 25.0% |
| ! | TGAAATATTAACTATGGATC+AGG | + | chr3.2:71480753-71480772 | MS.gene73898:intron | 25.0% |
| ! | TTCAGAACCATTATTCTAAA+AGG | + | chr3.2:71479965-71479984 | MS.gene73898:CDS | 25.0% |
| !! | TCAGAACCATTATTCTAAAA+GGG | + | chr3.2:71479966-71479985 | MS.gene73898:CDS | 25.0% |
| !!! | TGTCTTTTCGTTACTTTTTT+GGG | + | chr3.2:71481001-71481020 | MS.gene73898:intron | 25.0% |
| !!! | TTGTCTTTTCGTTACTTTTT+TGG | + | chr3.2:71481000-71481019 | MS.gene73898:intron | 25.0% |
| !!! | TTTTTTTATAATAGTGACCG+GGG | + | chr3.2:71480639-71480658 | MS.gene73898:intron | 25.0% |
| AACCAAATCAAACTCATGAA+CGG | - | chr3.2:71480722-71480741 | None:intergenic | 30.0% | |
| AGTCTATCAATTACAGTCAT+GGG | + | chr3.2:71481405-71481424 | MS.gene73898:CDS | 30.0% | |
| ATATAAGTACGGTGAACTAT+TGG | + | chr3.2:71480783-71480802 | MS.gene73898:intron | 30.0% | |
| ATATTAGTTGCAAGTGCAAT+CGG | + | chr3.2:71479688-71479707 | MS.gene73898:CDS | 30.0% | |
| ATGTCAAACTCTTTGTTCTT+TGG | + | chr3.2:71479548-71479567 | MS.gene73898:CDS | 30.0% | |
| ATTGTTCACTCTGTTATCAT+AGG | + | chr3.2:71480375-71480394 | MS.gene73898:CDS | 30.0% | |
| CTTTCTTAATTAATCGGTGA+AGG | + | chr3.2:71481058-71481077 | MS.gene73898:intron | 30.0% | |
| GAAGATTCCTTCAACAATAA+GGG | - | chr3.2:71481514-71481533 | None:intergenic | 30.0% | |
| GGTGATTATTGAATTTCTCA+CGG | - | chr3.2:71481209-71481228 | None:intergenic | 30.0% | |
| GTTATCATAGGAATTTCTCT+AGG | + | chr3.2:71480387-71480406 | MS.gene73898:CDS | 30.0% | |
| TCCAATATATCTCTTCTACT+AGG | + | chr3.2:71481639-71481658 | MS.gene73898:CDS | 30.0% | |
| TCCTAGTAGAAGAGATATAT+TGG | - | chr3.2:71481643-71481662 | None:intergenic | 30.0% | |
| TGAAGATTCCTTCAACAATA+AGG | - | chr3.2:71481515-71481534 | None:intergenic | 30.0% | |
| TTGTTTAAACGAACATCCTT+GGG | + | chr3.2:71479861-71479880 | MS.gene73898:CDS | 30.0% | |
| ! | ACTTTTCATCAGTTCTTTGA+AGG | + | chr3.2:71480456-71480475 | MS.gene73898:CDS | 30.0% |
| ! | TTTGAGTTAATCATAGGTGT+TGG | + | chr3.2:71480341-71480360 | MS.gene73898:intron | 30.0% |
| !!! | TTTTTTATAATAGTGACCGG+GGG | + | chr3.2:71480640-71480659 | MS.gene73898:intron | 30.0% |
| AAGAATGGTAGGCTTCAATT+TGG | + | chr3.2:71481615-71481634 | MS.gene73898:CDS | 35.0% | |
| AATCCAAGGATGCAAAAGAA+TGG | + | chr3.2:71481600-71481619 | MS.gene73898:CDS | 35.0% | |
| ACTTGGAAGTTGTATAACTC+AGG | + | chr3.2:71480485-71480504 | MS.gene73898:CDS | 35.0% | |
| AGCTGGGATCTTAATCTATA+TGG | + | chr3.2:71481545-71481564 | MS.gene73898:CDS | 35.0% | |
| ATCAGAACTTCTTCGTCATA+GGG | + | chr3.2:71480104-71480123 | MS.gene73898:CDS | 35.0% | |
| CAAGGATGTTCGTTTAAACA+AGG | - | chr3.2:71479862-71479881 | None:intergenic | 35.0% | |
| CACCAAACAAACAAATACAC+TGG | - | chr3.2:71480902-71480921 | None:intergenic | 35.0% | |
| CTGGTCATAAATCACTTGAA+AGG | - | chr3.2:71480883-71480902 | None:intergenic | 35.0% | |
| CTTGTTTAAACGAACATCCT+TGG | + | chr3.2:71479860-71479879 | MS.gene73898:CDS | 35.0% | |
| GACCAGTGTATTTGTTTGTT+TGG | + | chr3.2:71480897-71480916 | MS.gene73898:intron | 35.0% | |
| GAGTCTATCAATTACAGTCA+TGG | + | chr3.2:71481404-71481423 | MS.gene73898:CDS | 35.0% | |
| GGTATATCATATACACCATC+CGG | + | chr3.2:71480506-71480525 | MS.gene73898:intron | 35.0% | |
| TATGTCTCTTCTAGCCAAAT+GGG | + | chr3.2:71481671-71481690 | MS.gene73898:CDS | 35.0% | |
| TCCTAAAACTGTAAGACCAT+TGG | + | chr3.2:71480422-71480441 | MS.gene73898:CDS | 35.0% | |
| TGACGAAGAAGATGAAGAAA+GGG | + | chr3.2:71479621-71479640 | MS.gene73898:CDS | 35.0% | |
| TGCACATGGTCATATTTCTT+TGG | + | chr3.2:71480074-71480093 | MS.gene73898:CDS | 35.0% | |
| TGTTTAAACGAACATCCTTG+GGG | + | chr3.2:71479862-71479881 | MS.gene73898:CDS | 35.0% | |
| TGTTTATAATAGTGACCGGA+TGG | - | chr3.2:71480524-71480543 | None:intergenic | 35.0% | |
| TTGGGACTATACAAAGAATG+AGG | - | chr3.2:71479576-71479595 | None:intergenic | 35.0% | |
| ! | ATTGAAAGTGCAATCATTGC+AGG | + | chr3.2:71481371-71481390 | MS.gene73898:intron | 35.0% |
| ! | TAGGAATAGGAATTGGCTTA+GGG | + | chr3.2:71481454-71481473 | MS.gene73898:CDS | 35.0% |
| ! | TATTTTGTAGCGTAGAGCTT+TGG | - | chr3.2:71479653-71479672 | None:intergenic | 35.0% |
| ! | TTTTTATAATAGTGACCGGG+GGG | + | chr3.2:71480641-71480660 | MS.gene73898:intron | 35.0% |
| !! | ACCAATGGTCTTACAGTTTT+AGG | - | chr3.2:71480426-71480445 | None:intergenic | 35.0% |
| !! | ATGGTTCTGAAAATAAGCAG+TGG | - | chr3.2:71479956-71479975 | None:intergenic | 35.0% |
| !! | GTAAGATTCTCAAAAGCATC+AGG | - | chr3.2:71479835-71479854 | None:intergenic | 35.0% |
| !! | TAATCATAGGTGTTGGAGTT+GGG | + | chr3.2:71480348-71480367 | MS.gene73898:intron | 35.0% |
| !! | TTAATCATAGGTGTTGGAGT+TGG | + | chr3.2:71480347-71480366 | MS.gene73898:intron | 35.0% |
| !!! | CTTTTCGTTACTTTTTTGGG+TGG | + | chr3.2:71481004-71481023 | MS.gene73898:intron | 35.0% |
| !!! | TTTTCCATTCACTGGTTTTG+TGG | + | chr3.2:71479888-71479907 | MS.gene73898:CDS | 35.0% |
| AAGCCAATTCCTATTCCTAC+TGG | - | chr3.2:71481453-71481472 | None:intergenic | 40.0% | |
| ACTCCAGTAGGAATAGGAAT+TGG | + | chr3.2:71481447-71481466 | MS.gene73898:CDS | 40.0% | |
| ACTTCTTGGCAAAGTGATAC+CGG | + | chr3.2:71479723-71479742 | MS.gene73898:CDS | 40.0% | |
| ATAGCCACAAAACCAGTGAA+TGG | - | chr3.2:71479895-71479914 | None:intergenic | 40.0% | |
| ATATCTCTTCTACTAGGAGC+TGG | + | chr3.2:71481645-71481664 | MS.gene73898:CDS | 40.0% | |
| CAAGGATGCAAAAGAATGGT+AGG | + | chr3.2:71481604-71481623 | MS.gene73898:CDS | 40.0% | |
| CATCAGAACTTCTTCGTCAT+AGG | + | chr3.2:71480103-71480122 | MS.gene73898:CDS | 40.0% | |
| GACCGTTCATGAGTTTGATT+TGG | + | chr3.2:71480717-71480736 | MS.gene73898:intron | 40.0% | |
| GTATCACTTTGCCAAGAAGT+GGG | - | chr3.2:71479723-71479742 | None:intergenic | 40.0% | |
| GTATGTCTCTTCTAGCCAAA+TGG | + | chr3.2:71481670-71481689 | MS.gene73898:CDS | 40.0% | |
| GTGACGAAGAAGATGAAGAA+AGG | + | chr3.2:71479620-71479639 | MS.gene73898:CDS | 40.0% | |
| TGATATATTTGTACACCCCC+CGG | - | chr3.2:71480659-71480678 | None:intergenic | 40.0% | |
| TTGACTACTCCAGTAGGAAT+AGG | + | chr3.2:71481441-71481460 | MS.gene73898:CDS | 40.0% | |
| TTTGCTTTGACTACTCCAGT+AGG | + | chr3.2:71481435-71481454 | MS.gene73898:CDS | 40.0% | |
| ! | AGGAAGCACATGAATGAAAC+CGG | - | chr3.2:71479815-71479834 | None:intergenic | 40.0% |
| ! | ATCATCAAAGCATTTGCTGC+CGG | + | chr3.2:71479775-71479794 | MS.gene73898:CDS | 40.0% |
| ! | CATCAGTTCTTTGAAGGCAT+GGG | + | chr3.2:71480462-71480481 | MS.gene73898:CDS | 40.0% |
| ! | CCATTATTCTAAAAGGGCAC+CGG | + | chr3.2:71479972-71479991 | MS.gene73898:CDS | 40.0% |
| ! | CTACCATTCTTTTGCATCCT+TGG | - | chr3.2:71481606-71481625 | None:intergenic | 40.0% |
| ! | GTAGGAATAGGAATTGGCTT+AGG | + | chr3.2:71481453-71481472 | MS.gene73898:CDS | 40.0% |
| ! | GTATATGGAGATTCGGTTGA+AGG | - | chr3.2:71481230-71481249 | None:intergenic | 40.0% |
| ! | TCATCAGTTCTTTGAAGGCA+TGG | + | chr3.2:71480461-71480480 | MS.gene73898:CDS | 40.0% |
| AAAGTCAACGCAGCTACCAA+TGG | - | chr3.2:71480441-71480460 | None:intergenic | 45.0% | |
| AACCATAAGAGTCCCCATAG+CGG | - | chr3.2:71479923-71479942 | None:intergenic | 45.0% | |
| ACTCTGCGGCTATTAGAGTT+GGG | - | chr3.2:71479594-71479613 | None:intergenic | 45.0% | |
| ATCTTCAATGCAGCTTCAGC+TGG | + | chr3.2:71481528-71481547 | MS.gene73898:CDS | 45.0% | |
| CCAACTGCCCTTATTGTTGA+AGG | + | chr3.2:71481504-71481523 | MS.gene73898:CDS | 45.0% | |
| CCTTCAACAATAAGGGCAGT+TGG | - | chr3.2:71481507-71481526 | None:intergenic | 45.0% | |
| GCATCACATAGTCATGCACA+TGG | + | chr3.2:71480060-71480079 | MS.gene73898:CDS | 45.0% | |
| GGTATCACTTTGCCAAGAAG+TGG | - | chr3.2:71479724-71479743 | None:intergenic | 45.0% | |
| GTGAATGGAAAATCACCCCA+AGG | - | chr3.2:71479880-71479899 | None:intergenic | 45.0% | |
| GTTCTTCATTCTCCACGTCT+GGG | - | chr3.2:71480020-71480039 | None:intergenic | 45.0% | |
| TCGTCATAGGGTCATATCAC+AGG | + | chr3.2:71480116-71480135 | MS.gene73898:CDS | 45.0% | |
| TCTTCAATGCAGCTTCAGCT+GGG | + | chr3.2:71481529-71481548 | MS.gene73898:CDS | 45.0% | |
| TGTTCTTCATTCTCCACGTC+TGG | - | chr3.2:71480021-71480040 | None:intergenic | 45.0% | |
| TTCTTCATTCTCCACGTCTG+GGG | - | chr3.2:71480019-71480038 | None:intergenic | 45.0% | |
| ! | TGGGGTGATTTTCCATTCAC+TGG | + | chr3.2:71479880-71479899 | MS.gene73898:CDS | 45.0% |
| ! | TTCTTTGAAGGCATGGGACT+TGG | + | chr3.2:71480468-71480487 | MS.gene73898:CDS | 45.0% |
| !! | ATTTGCTGCCGGTGTGATTT+TGG | + | chr3.2:71479786-71479805 | MS.gene73898:CDS | 45.0% |
| !! | CTGCTGACTTCATGAATCCA+AGG | + | chr3.2:71481586-71481605 | MS.gene73898:CDS | 45.0% |
| !!! | CCGGTGCCCTTTTAGAATAA+TGG | - | chr3.2:71479975-71479994 | None:intergenic | 45.0% |
| !!! | TCTTTTTCAGGGCTTAACGC+CGG | - | chr3.2:71479745-71479764 | None:intergenic | 45.0% |
| ACCGGTTGCCAAAATCACAC+CGG | - | chr3.2:71479797-71479816 | None:intergenic | 50.0% | |
| CACTCTGCGGCTATTAGAGT+TGG | - | chr3.2:71479595-71479614 | None:intergenic | 50.0% | |
| GGTGTTTGTCTCCCACTTCT+TGG | + | chr3.2:71479709-71479728 | MS.gene73898:CDS | 50.0% | |
| TTCGTCACATGTGCACTCTG+CGG | - | chr3.2:71479608-71479627 | None:intergenic | 50.0% | |
| CACCGCTATGGGGACTCTTA+TGG | + | chr3.2:71479918-71479937 | MS.gene73898:CDS | 55.0% | |
| GCCTGACTTTCAACCTGTGC+CGG | - | chr3.2:71479994-71480013 | None:intergenic | 55.0% | |
| GTGGCTATGTGCACCGCTAT+GGG | + | chr3.2:71479907-71479926 | MS.gene73898:CDS | 55.0% | |
| TGGCTATGTGCACCGCTATG+GGG | + | chr3.2:71479908-71479927 | MS.gene73898:CDS | 55.0% | |
| TGTGGCTATGTGCACCGCTA+TGG | + | chr3.2:71479906-71479925 | MS.gene73898:CDS | 55.0% | |
| ! | ACCGGCACAGGTTGAAAGTC+AGG | + | chr3.2:71479990-71480009 | MS.gene73898:CDS | 55.0% |
| !! | GCCGGTGTGATTTTGGCAAC+CGG | + | chr3.2:71479793-71479812 | MS.gene73898:CDS | 55.0% |
| !! | TTCTAAAAGGGCACCGGCAC+AGG | + | chr3.2:71479978-71479997 | MS.gene73898:CDS | 55.0% |
| AAGTCAGGCAACCCCAGACG+TGG | + | chr3.2:71480005-71480024 | MS.gene73898:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 71479532 | 71481698 | 71479532 | ID=MS.gene73898 |
| chr3.2 | mRNA | 71479532 | 71481698 | 71479532 | ID=MS.gene73898.t1;Parent=MS.gene73898 |
| chr3.2 | exon | 71479532 | 71480137 | 71479532 | ID=MS.gene73898.t1.exon1;Parent=MS.gene73898.t1 |
| chr3.2 | CDS | 71479532 | 71480137 | 71479532 | ID=cds.MS.gene73898.t1;Parent=MS.gene73898.t1 |
| chr3.2 | exon | 71480357 | 71480506 | 71480357 | ID=MS.gene73898.t1.exon2;Parent=MS.gene73898.t1 |
| chr3.2 | CDS | 71480357 | 71480506 | 71480357 | ID=cds.MS.gene73898.t1;Parent=MS.gene73898.t1 |
| chr3.2 | exon | 71481393 | 71481698 | 71481393 | ID=MS.gene73898.t1.exon3;Parent=MS.gene73898.t1 |
| chr3.2 | CDS | 71481393 | 71481698 | 71481393 | ID=cds.MS.gene73898.t1;Parent=MS.gene73898.t1 |
| Gene Sequence |
| Protein sequence |
