AlfalfaGEDB | MS.gene74383

M. sativa cultivar XinJiangDaYe / MS.gene74383

KEGG: -
GO: -
PFAM: PF07227.14 PF16312.8

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74383.t1	XP_003605787.2	97.4	1239	29	2	1	1239	1	1236	0.00E+00	2118.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74383.t1	Q84TI3	43.4	1131	551	26	156	1239	74	1162	1.1e-178	629.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74383.t1	G7JTL7	97.4	1239	29	2	1	1239	1	1236	0.0e+00	2118.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049300	MS.gene74383	0.806916	6.52E-50	-1.69E-46
MS.gene051744	MS.gene74383	0.800023	1.75E-48	-1.69E-46
MS.gene053418	MS.gene74383	0.804864	1.76E-49	-1.69E-46
MS.gene053427	MS.gene74383	0.823885	1.09E-53	-1.69E-46
MS.gene054651	MS.gene74383	0.809452	1.88E-50	-1.69E-46
MS.gene054939	MS.gene74383	0.831371	1.73E-55	-1.69E-46
MS.gene054940	MS.gene74383	0.823168	1.60E-53	-1.69E-46
MS.gene056699	MS.gene74383	0.812438	4.24E-51	-1.69E-46
MS.gene05686	MS.gene74383	0.815472	9.09E-52	-1.69E-46
MS.gene057855	MS.gene74383	0.809491	1.84E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74383.t1	MTR_4g039650	97.175	1239	32	2	1	1239	1	1236	0.0	2469
MS.gene74383.t1	MTR_5g097360	37.665	454	268	9	788	1227	92	544	9.43e-88	296

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74383.t1	AT3G63500	45.511	1136	520	26	156	1239	74	1162	0.0	762
MS.gene74383.t1	AT3G63500	45.511	1136	520	26	156	1239	74	1162	0.0	762
MS.gene74383.t1	AT3G63500	51.815	799	349	14	451	1239	115	887	0.0	709
MS.gene74383.t1	AT1G14740	41.138	457	240	6	784	1238	304	733	3.44e-107	355
MS.gene74383.t1	AT5G48160	35.345	464	280	9	782	1227	90	551	1.32e-87	296
MS.gene74383.t1	AT5G48160	35.345	464	280	9	782	1227	90	551	1.32e-87	296
MS.gene74383.t1	AT3G07780	37.089	426	254	7	788	1202	95	517	2.36e-83	284
MS.gene74383.t1	AT3G07780	37.089	426	254	7	788	1202	95	517	2.36e-83	284
MS.gene74383.t1	AT3G07780	37.089	426	254	7	788	1202	106	528	5.28e-83	283

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Find 320 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACCCCATGATGCTTG+TGG	0.652227	4.2:+65108876	None:intergenic
AAAACAGACCTTGTCGAGTA+AGG	0.476545	4.2:-65109867	MS.gene74383:CDS
AAAAGGGAAAGGAGTAGTGG+TGG	0.623501	4.2:-65108663	MS.gene74383:CDS
AAAGAGAACAGTGTTGTAGC+TGG	0.470049	4.2:-65106544	MS.gene74383:CDS
AAAGTTGTTCTTGTCCTTTC+TGG	0.088608	4.2:+65108622	None:intergenic
AACAAACCCGAGTCAATTGA+AGG	0.536904	4.2:-65109575	MS.gene74383:CDS
AACATGCCCGGTAGATGACA+TGG	0.629167	4.2:-65109384	MS.gene74383:CDS
AACGATGACAGTCTTGCAAT+GGG	0.514322	4.2:-65109272	MS.gene74383:CDS
AACGGAGAAGGGAACAGATA+AGG	0.460915	4.2:-65109651	MS.gene74383:CDS
AAGAACGGTGGTGATAAGAA+TGG	0.654195	4.2:-65110874	MS.gene74383:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGAATGAATGTCGTTC+AGG	-	chr4.2:65107071-65107090	MS.gene74383:intron	30.0%
AAAGTTGACCAAACAGAAAA+CGG	+	chr4.2:65110133-65110152	None:intergenic	30.0%
AACCATAATGCATGTAAACA+TGG	+	chr4.2:65110357-65110376	None:intergenic	30.0%
AACCATGTTTACATGCATTA+TGG	-	chr4.2:65110352-65110371	MS.gene74383:CDS	30.0%
AAGTTCCTTGTAAAGAGATT+CGG	+	chr4.2:65109067-65109086	None:intergenic	30.0%
AATGCAAGCATTTCATATAC+TGG	+	chr4.2:65109297-65109316	None:intergenic	30.0%
AGTAGTGTTCATAAAGACTT+TGG	-	chr4.2:65110594-65110613	MS.gene74383:CDS	30.0%
ATAGTACTACTGGAACAAAA+GGG	-	chr4.2:65108941-65108960	MS.gene74383:CDS	30.0%
ATATATGCCGAACTAAATTG+AGG	+	chr4.2:65109802-65109821	None:intergenic	30.0%
ATCAACAATGTGAAGGATAA+AGG	-	chr4.2:65107497-65107516	MS.gene74383:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	65106066	65110941	65106066	ID=MS.gene74383
chr4.2	mRNA	65106066	65110941	65106066	ID=MS.gene74383.t1;Parent=MS.gene74383
chr4.2	exon	65107779	65110941	65107779	ID=MS.gene74383.t1.exon1;Parent=MS.gene74383.t1
chr4.2	CDS	65107779	65110941	65107779	ID=cds.MS.gene74383.t1;Parent=MS.gene74383.t1
chr4.2	exon	65106066	65106622	65106066	ID=MS.gene74383.t1.exon2;Parent=MS.gene74383.t1
chr4.2	CDS	65106066	65106622	65106066	ID=cds.MS.gene74383.t1;Parent=MS.gene74383.t1

Gene Sequence

>MS.gene74383

ATGAAGAGGTTAAGGTCAAGCGAAGATCTTCATTCGTATGGTGAAAAGAACGGTGGTGATAAGAATGGTGTGAAGGATTCATCGAATCTCAACCGTTCGTTTTCATCTACTGGTCAGAGAAGTTTTTATTATAAGCAGGAGAATGTAAGGAAGAGTTTAATTTCGTCGTCGTCTTCGTCGCGATACGATAGGGATCGAACGGTGGAGGAAGATCGGGAAGGTTCTAGATTGGTTAGGAAAAGATCTGAGCATGATTTTGATGGGTTTGATAGGAGGAAGGGTTTCGATCGGGATCGGGATCGGTATAGCCGGGACAGCCGGGATGGTGGGTACAGTGGAGGTGTTGATAGGAATATTGGGGGTGCTGAAAGGAATATTGGGGGTGCTGAAAGGAACAGTGGGGGTGCTGAAAGGAATTTTGGGGGTGTTGAAAGGAATAGTGGGGGTGGAGATAGGAATTTGATTCATAGGTCGGAGAGTTTCTGTGGAGGGTCAAGGAGGGAGTTTCCGAAGGGGTTTCGATCGGAGAGGGATCGATCGAGGAGGGAGGGGAGTGTGTCGTCGTGGAGGAGAGGATTGAAGGATTTTGATGAGAGTAGTAGAGGGAGTGGTGGTGGTAGTAGGGTTGAAGAGAGGGTGGTTAGGTCACCGAAGGGTTTTTCGAGGGATGTGAAATCACCCAGTTGGTCGAAGGATTCGGAGAGTGAGCAGTCGAAGAAGAGAAATTCGGAGTCTCCAAGGGTGTTTAGGGAGGTTAAGTCGAAATCTAAGTCGCCTTCTGTGTCTAAGGATTCGGAGAGTGAACAATCGAAGAGTGTTAGTGGTGTTGAGGTGAAGAAAAGCGAGGAGTTGTTGCAACAGGTTCAGAGTGGAAGTGGTAGTGAAATGGAAGAGGGGGAGCTTGAACCTGAACCGGTCCGTGAAACTGAACTGAAACCTGCTCCGAAAGATGAAGCATCGGGAAGTGAAGTCCAGCAAACCTCTGAGGACAAACAAGTGCATAAGAAAAAGAATGAATGTCGTTCAGGTGATGCAGATGTTGTTATGGAAGAAAAACAGACCTTGTCGAGTAAGGAAGAAGCAAAACATACGCAGGATATTGATTCTGAGGTAAAAGTTACAGGAAAGGAAGTTCTTGAGTTGCCTAAGACTCAAGATGATCCAACTAATGAAATATCTGTTGCTGAGAGTGAGATTGGAACCACAAGTAATGTTGATGATAAGAAGGACGAGTGTTTGAACGGGGATGATACTCGGTGTAAGGAGGAAACGGAGAAGGGAACAGATAAGGGGAAGGCGATGCTTAATGAAGAGGAGCGTGAGGAGGATAATGGTGTAGGTGGTAACAAACCCGAGTCAATTGAAGGCTCAACCGAGAATGATGTTACTGATGAAGTGAAGGGAGAAACAATGACGGAGAGTGTGAGTGTGATCAACAATGTGAAGGATAAAGGCAAAAGCGTCTCTGTCACACCTGATGTTGCACATTCTTCAAAAGATGGCTTGTGGATTGATAGAGGATCGAATGATCTTGCAACATGCCCGGTAGATGACATGGAAGGTCCAAGCACAAGAGGGTTCGAGCTTTTTTCTACCTCTCCTGTGAGAAAAGCAGAAAAGTCTGATAGCTCGGTTCTAAAAAAGGAGAACGATGACAGTCTTGCAATGGGCCAGCTTGACCTTTCTCTTAGCTTGCCGAATGTTCTGTTACCGATAGGAGCTCAGGAAGCAGCAACGCAAGCCCCTGGATCTCCCAGTCAAGCACGGAGTGTTCAGTCTCTAAGTAATACATTTTGTACTAACTCAGATGGTTTTACTGCATCAATGTCATTTTCAGGTTCCCAATCATTATATCACAATCCAAGTTGTTCTCTAACAAAAAATTCAGTGGACTATGAACAATCTGTTGGAAAATCAGTTGGCAGTCGCCCCTTGTTCCAGGGATTTGATTGGCAAGCCCTATCTCAGCAGGGTGATCCCAAACAGAAAGAAGTTCCCTCTAGTCAGAGAACTTCGATGAATGGGAACGGTTCTCTTTACCAGCCACAAGCATCATGGGGTGTTTTAGACACTCAAGCTTTGAAAGGTCAACATTCTCGGGCTCTAGAAGGAAGCTCAAAAATGGGCAGTGGGCTTGAAAAACAATTGAGTTTTCATAAGCAAATTTCAGGACAGTCAAGACGACATGATGATGTTCGGTCTCCTACGCAGAGTGTTGGGTCTCATGACAATGGATCAAATTATAGTTTTGAGAAAAAAAGGGAAAGGAGTAGTGGTGGTCTACATCGAACTACCAGCCAGAAAGGACAAGAACAACTTTTGATGGGTGGACTTGATTTTGTTAAGACAATCATTGCTAGAATTATTTCTGAATCTGTGCCCGTGATGTCGAGAAAGTTCCATGAAATGTCTGGACAGTACATGACACATATGAAAGAGGGTATTCGGGAACTCATGCTCAATGCAGATAGCCATGGTCAGATACTTGCTTTTCAAAAAATTCTGCAGAACAGGTCTGATATAACCTTGGATGTTCTAGTGAAGTGTCATCGAGTGCAACTGGAAATTCTGGTTGCAATAAAAACTGGTTTAGCCCATTATCTTCACCTAGGTGATAATATTTCATCTAATGATTTAGCTCAAGTTTTTCTAAACTTGAAGTGTAGGAATGTATCATGTCGAAGTCAGTTGCCGGTCGATGAATGTGATTGCAAGCTTTGTGTGCAGAAGAATGGTTTTTGCAGGGAATGTATGTGTCTTGTGTGCTCTAAGTTTGACAACGCGTCGAACACTGTTAGTTGGGTTGGGTGTGATGTTTGTCTTCACTGGTGTCATACTGACTGTGGATTGCGGGAATCTTATATTAGAAATGGACATAGTACTACTGGAACAAAAGGGACGACTGAGATGCAGTTTCATTGCATTGCTTGTGATCACCCTTCTGAGATGTTTGGCTTTGTCAAAGAGGTGTTTCAAAATTTTGCAAAAGAGTGGTCAGCCGAATCTCTTTACAAGGAACTTGAATATGTGAAGAGGATCTTTTCTGCCAGCAAGGATATAAGAGGGAGACAATTGCATGAGATTGCAGATCAAATGCTGCCAAGGTTGACAATTAAGTCAAACCTTCCTGAGGTTTTGAGACGCATCATGTCTTTCCTCTCTGGTAAGCAAACAAATGCCTATAATAGTTTCATAATCTTATTATTTGAATGAATTTAGCCTAATTTTCCAGTATATGAAATGCTTGCATTAAACATTGATCTCTGTATATGGAATTATCATTTTTTGGCAACTGTATATGGAAAATTAAGTGCAACTTGCTGAGTGAATTGTTTTCTGCTGACTTGCTTTATAAACAAATCAAATATATTTGAACATTGTACTTTGGGCGTATGCAGGTCAATGATACTCGGAATCTTCGTCCCATATTGTTGTGTTAAATTTTATGTCATCAATGCCTATAAACCTGTATTTTGGTTTCTTTAGTGGTTAGAACATTAGGTAAATCATGCAAAGTATACATTTTTCATGGTATTGGATGAATTATTATTGCTACTAAGGCTTATTCTTTCTGTCTGAATGACATAAATTATAATGGTTGTCAGATTTAAATATGACTCTTTTGCTTCTGTAAATCATTCTGTTAGACCTGGCATTTTTTCGGAATGTATCAAACTATGTCAACAACTCCATGACAGATATATCATGTGGAATATAGTTAGTGATGGTGTTTCCTCAATTTAGTTCGGCATATATGTTCTTTGGACGTTTGCATCATTGGTGTTTGTGAGGCTCGAGTGTTTCCTCAATTTAGTTCAGAATTTTGTTCTTTGGATGTTAAACAATGTTTGCATCATTGGTGTTTGTGTAGGCTAAATTATATGTATATACATGCATTGTTATTACTATCTTATGATTCATGCTCGAATAAATACTAAATTGAACTCAATCTATACGAATCTCTAGTATGCATCTATTTTGAACTTGAACACCGATTCAGTATGAATGTATGATATAATATTGATTCATTCTAATGAATCACTGCCTAAACTTAGTGTAGTCTACCGTTTTCTGTTTGGTCAACTTTGCATAACCAACCACTTTTCATTTGATTTATGACTTGAATCTTGAATTATTTTGAGGTCCATATATGATATATCAGCTTAAAATTCTGTTGTCATGTAAAAAAAAGACATTTTATTGGTAGCATATCTTAGAATTCACAATATCTGCTTCACGATTCAGAAAATTGGTCTCCTGGTTTACAATTTGATTATCGATTTGATAACCATGTTTACATGCATTATGGTTAATTGCAGATTGCGATTCTTCCAAATTAGCCCTGACAACGAACTTCTCTGGAAAGGAACAAGTCAAAGAGAACAGTGTTGTAGCTGGGCCCAGCCAGGAAGCTGCCTGGCTGAAATCTATTTATTCAGATAAGGCACCTCTGTTGGAAAGACCTGCAAGCATCCTTCCAAGATTTGACCAGAATGATAAAAGGACAATGGTGCAGGAGTTGCAGATGAGTAGTGTTCATAAAGACTTTGGTTTTGATGAATTGGACAGTATAATAAAAATCAAACATGCAGAGGCCAAAATGTTTCAATCGCGTGCTGACGATGCTAGGAGAGAAGCTGAAGGGTTGAAGCGCATTGCCCTTGCAAAGAATGAGAAAATTGAAGAAGAGTATGTCAACCGAATCACCAAGTTACGGTTCACTGAGACAGATGAAATGCGTAAGCGAAAGTTGGAAGAACTCCATGGATTAGAGAGGGCACATATGGAGTATTTGAACATGAAAATGAGAATGGAGTCAGACATCAAAGATCTGTTATCCAAAATGGAAGCAACTAAAATGAACCTTGCAATGTGA

Protein sequence

>MS.gene74383.t1

MKRLRSSEDLHSYGEKNGGDKNGVKDSSNLNRSFSSTGQRSFYYKQENVRKSLISSSSSSRYDRDRTVEEDREGSRLVRKRSEHDFDGFDRRKGFDRDRDRYSRDSRDGGYSGGVDRNIGGAERNIGGAERNSGGAERNFGGVERNSGGGDRNLIHRSESFCGGSRREFPKGFRSERDRSRREGSVSSWRRGLKDFDESSRGSGGGSRVEERVVRSPKGFSRDVKSPSWSKDSESEQSKKRNSESPRVFREVKSKSKSPSVSKDSESEQSKSVSGVEVKKSEELLQQVQSGSGSEMEEGELEPEPVRETELKPAPKDEASGSEVQQTSEDKQVHKKKNECRSGDADVVMEEKQTLSSKEEAKHTQDIDSEVKVTGKEVLELPKTQDDPTNEISVAESEIGTTSNVDDKKDECLNGDDTRCKEETEKGTDKGKAMLNEEEREEDNGVGGNKPESIEGSTENDVTDEVKGETMTESVSVINNVKDKGKSVSVTPDVAHSSKDGLWIDRGSNDLATCPVDDMEGPSTRGFELFSTSPVRKAEKSDSSVLKKENDDSLAMGQLDLSLSLPNVLLPIGAQEAATQAPGSPSQARSVQSLSNTFCTNSDGFTASMSFSGSQSLYHNPSCSLTKNSVDYEQSVGKSVGSRPLFQGFDWQALSQQGDPKQKEVPSSQRTSMNGNGSLYQPQASWGVLDTQALKGQHSRALEGSSKMGSGLEKQLSFHKQISGQSRRHDDVRSPTQSVGSHDNGSNYSFEKKRERSSGGLHRTTSQKGQEQLLMGGLDFVKTIIARIISESVPVMSRKFHEMSGQYMTHMKEGIRELMLNADSHGQILAFQKILQNRSDITLDVLVKCHRVQLEILVAIKTGLAHYLHLGDNISSNDLAQVFLNLKCRNVSCRSQLPVDECDCKLCVQKNGFCRECMCLVCSKFDNASNTVSWVGCDVCLHWCHTDCGLRESYIRNGHSTTGTKGTTEMQFHCIACDHPSEMFGFVKEVFQNFAKEWSAESLYKELEYVKRIFSASKDIRGRQLHEIADQMLPRLTIKSNLPEVLRRIMSFLSDCDSSKLALTTNFSGKEQVKENSVVAGPSQEAAWLKSIYSDKAPLLERPASILPRFDQNDKRTMVQELQMSSVHKDFGFDELDSIIKIKHAEAKMFQSRADDARREAEGLKRIALAKNEKIEEEYVNRITKLRFTETDEMRKRKLEELHGLERAHMEYLNMKMRMESDIKDLLSKMEATKMNLAM