Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054940.t1 | XP_003602587.2 | 97.7 | 779 | 17 | 1 | 1 | 779 | 216 | 993 | 0.00E+00 | 1185.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054940.t1 | Q9LIH5 | 29.7 | 634 | 258 | 23 | 182 | 778 | 193 | 675 | 6.4e-31 | 137.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054940.t1 | A0A072V1M0 | 97.7 | 779 | 17 | 1 | 1 | 779 | 247 | 1024 | 0.0e+00 | 1185.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene054940.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049300 | MS.gene054940 | 0.932392 | 9.12E-95 | -1.69E-46 |
| MS.gene054939 | MS.gene054940 | 0.982803 | 4.83E-156 | -1.69E-46 |
| MS.gene054940 | MS.gene06422 | 0.955225 | 4.95E-113 | -1.69E-46 |
| MS.gene054940 | MS.gene06423 | 0.944361 | 2.25E-103 | -1.69E-46 |
| MS.gene054940 | MS.gene072014 | 0.821488 | 3.93E-53 | -1.69E-46 |
| MS.gene054940 | MS.gene21536 | 0.800763 | 1.24E-48 | -1.69E-46 |
| MS.gene054940 | MS.gene30977 | 0.976845 | 1.30E-142 | -1.69E-46 |
| MS.gene054940 | MS.gene30978 | 0.958726 | 1.15E-116 | -1.69E-46 |
| MS.gene054940 | MS.gene32891 | 0.808767 | 2.63E-50 | -1.69E-46 |
| MS.gene054940 | MS.gene40157 | 0.805328 | 1.41E-49 | -1.69E-46 |
| MS.gene054940 | MS.gene40799 | 0.801998 | 6.91E-49 | -1.69E-46 |
| MS.gene054940 | MS.gene44179 | 0.803911 | 2.78E-49 | -1.69E-46 |
| MS.gene054940 | MS.gene55785 | -0.814074 | 1.85E-51 | -1.69E-46 |
| MS.gene054940 | MS.gene60935 | 0.803792 | 2.94E-49 | -1.69E-46 |
| MS.gene054940 | MS.gene63793 | 0.833337 | 5.65E-56 | -1.69E-46 |
| MS.gene054940 | MS.gene71891 | -0.804034 | 2.62E-49 | -1.69E-46 |
| MS.gene054940 | MS.gene73498 | 0.820831 | 5.57E-53 | -1.69E-46 |
| MS.gene054940 | MS.gene74383 | 0.823168 | 1.60E-53 | -1.69E-46 |
| MS.gene054940 | MS.gene76374 | 0.803619 | 3.20E-49 | -1.69E-46 |
| MS.gene054940 | MS.gene93025 | 0.827449 | 1.55E-54 | -1.69E-46 |
| MS.gene054940 | MS.gene96191 | 0.808267 | 3.37E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054940.t1 | MTR_3g095960 | 97.176 | 779 | 21 | 1 | 1 | 779 | 216 | 993 | 0.0 | 1574 |
| MS.gene054940.t1 | MTR_3g095960 | 97.176 | 779 | 21 | 1 | 1 | 779 | 247 | 1024 | 0.0 | 1572 |
| MS.gene054940.t1 | MTR_8g093480 | 47.881 | 708 | 305 | 16 | 77 | 779 | 131 | 779 | 0.0 | 560 |
| MS.gene054940.t1 | MTR_8g093480 | 47.881 | 708 | 305 | 16 | 77 | 779 | 88 | 736 | 0.0 | 560 |
| MS.gene054940.t1 | MTR_8g093480 | 47.286 | 700 | 305 | 16 | 77 | 771 | 131 | 771 | 0.0 | 543 |
| MS.gene054940.t1 | MTR_8g093480 | 47.286 | 700 | 305 | 16 | 77 | 771 | 88 | 728 | 0.0 | 543 |
| MS.gene054940.t1 | MTR_2g060650 | 45.631 | 103 | 56 | 0 | 676 | 778 | 1345 | 1447 | 1.68e-21 | 101 |
| MS.gene054940.t1 | MTR_2g014260 | 45.455 | 88 | 48 | 0 | 688 | 775 | 801 | 888 | 1.10e-16 | 85.1 |
| MS.gene054940.t1 | MTR_2g014260 | 45.455 | 88 | 48 | 0 | 688 | 775 | 800 | 887 | 1.22e-16 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054940.t1 | AT3G18640 | 35.797 | 433 | 181 | 16 | 381 | 778 | 305 | 675 | 4.01e-45 | 173 |
| MS.gene054940.t1 | AT3G18640 | 35.797 | 433 | 181 | 16 | 381 | 778 | 305 | 675 | 4.01e-45 | 173 |
| MS.gene054940.t1 | AT3G18640 | 35.797 | 433 | 181 | 16 | 381 | 778 | 305 | 675 | 4.01e-45 | 173 |
| MS.gene054940.t1 | AT2G10553 | 73.750 | 80 | 21 | 0 | 699 | 778 | 2 | 81 | 9.85e-33 | 121 |
| MS.gene054940.t1 | AT3G26850 | 47.826 | 92 | 45 | 1 | 691 | 779 | 174 | 265 | 2.35e-20 | 92.0 |
| MS.gene054940.t1 | AT3G26850 | 47.826 | 92 | 45 | 1 | 691 | 779 | 174 | 265 | 2.35e-20 | 92.0 |
| MS.gene054940.t1 | AT2G33835 | 45.882 | 85 | 45 | 1 | 695 | 778 | 502 | 586 | 3.30e-16 | 83.2 |
Find 189 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTTGGGTAATTCAATTA+AGG | 0.210347 | 3.1:-76409175 | MS.gene054940:CDS |
| TTCATTGGATCATACTGTTT+TGG | 0.221297 | 3.1:+76409312 | None:intergenic |
| TCATCCCTTAATCTTCTAAT+AGG | 0.222977 | 3.1:+76410473 | None:intergenic |
| TCCTTCTTATCACTCAAAAT+TGG | 0.250515 | 3.1:+76410149 | None:intergenic |
| AAGCAGAATGATACAGTTTC+TGG | 0.256951 | 3.1:-76410302 | MS.gene054940:CDS |
| CATCATCAGGTCCAGCATTT+TGG | 0.268653 | 3.1:+76408992 | None:intergenic |
| TTTCATTTCCTTTGTTTGCT+TGG | 0.279484 | 3.1:+76408969 | None:intergenic |
| TGTCTCCTGATTGGAATTAT+AGG | 0.280617 | 3.1:-76410034 | MS.gene054940:CDS |
| TTCTTGTGTCTGCGGAATAT+TGG | 0.281117 | 3.1:+76408801 | None:intergenic |
| GGAGCCCTATTAGAAGATTA+AGG | 0.281152 | 3.1:-76410478 | MS.gene054940:CDS |
| CTCATGGGTAGTAGGATATC+TGG | 0.284857 | 3.1:+76410826 | None:intergenic |
| TCATTAGATCTACCACTCTT+TGG | 0.290780 | 3.1:+76410878 | None:intergenic |
| GAACCAAGTATTATGGATTC+AGG | 0.293291 | 3.1:-76409579 | MS.gene054940:CDS |
| CTCATAGGTAGCAGAATATC+TGG | 0.294314 | 3.1:+76410916 | None:intergenic |
| TCTGTTTATGTTCTTCCATA+TGG | 0.306253 | 3.1:+76409997 | None:intergenic |
| ACTCCATTAGTCCAAATAAA+AGG | 0.309217 | 3.1:-76410391 | MS.gene054940:CDS |
| TTCACTAGAGAAAGGGAAAA+TGG | 0.309831 | 3.1:-76410944 | MS.gene054940:CDS |
| CTCGTGGTTAGTAGGATATC+TGG | 0.333203 | 3.1:+76410736 | None:intergenic |
| TTTGCTCAGTAGATACTTCC+TGG | 0.335470 | 3.1:+76409613 | None:intergenic |
| TTTAAATTCTCATGAATTGA+AGG | 0.339340 | 3.1:-76409418 | MS.gene054940:CDS |
| CACCGGAGAACCAAGTATTA+TGG | 0.341165 | 3.1:-76409586 | MS.gene054940:CDS |
| TCAAAACACGGTGGTCAATA+AGG | 0.346403 | 3.1:-76409100 | MS.gene054940:CDS |
| TTTGTTTGCTTGGCATCATC+AGG | 0.350045 | 3.1:+76408979 | None:intergenic |
| TTGATGCATGTGATTGAAAT+AGG | 0.355075 | 3.1:+76409357 | None:intergenic |
| GTCGAAATGGTAAACATTGT+AGG | 0.360118 | 3.1:-76410526 | MS.gene054940:CDS |
| TGCTCAATACTATCATTCAT+TGG | 0.363648 | 3.1:+76409297 | None:intergenic |
| GGTAGATCTAATGACGAATA+TGG | 0.374619 | 3.1:-76410689 | MS.gene054940:CDS |
| TGGATATGGTAAAGTTTCTA+TGG | 0.385533 | 3.1:-76411152 | MS.gene054940:CDS |
| ATAAGAAGGAAGCTGATCTT+TGG | 0.389807 | 3.1:-76410136 | MS.gene054940:CDS |
| GAAGATTAAGGGATGATAGA+TGG | 0.392675 | 3.1:-76410466 | MS.gene054940:CDS |
| GCCTCTCTGGCTCATATCCT+TGG | 0.394980 | 3.1:-76409474 | MS.gene054940:CDS |
| TGTACAAGTTTGTTAAGCTT+TGG | 0.396843 | 3.1:+76408748 | None:intergenic |
| GGGAGTTCAACGGCAGGATC+TGG | 0.399881 | 3.1:+76409333 | None:intergenic |
| GTGATTGAAATAGGCATTGC+AGG | 0.400850 | 3.1:+76409366 | None:intergenic |
| GCCTTCTCTTGAAGAAAGAA+TGG | 0.400963 | 3.1:+76409656 | None:intergenic |
| ATAGGCAAATCAGTAAATTC+TGG | 0.403354 | 3.1:+76410224 | None:intergenic |
| GCTAGTGGAAATTGTCGAAA+TGG | 0.404283 | 3.1:-76410539 | MS.gene054940:CDS |
| GGACTGTCCTCGACTCTATC+AGG | 0.404783 | 3.1:+76410326 | None:intergenic |
| ATTTACTGATTTGCCTATAA+CGG | 0.405639 | 3.1:-76410219 | MS.gene054940:CDS |
| TGCATTGGCTGAGTTTGTTA+AGG | 0.407254 | 3.1:-76408926 | MS.gene054940:CDS |
| CATCCCTTAATCTTCTAATA+GGG | 0.409509 | 3.1:+76410474 | None:intergenic |
| GATTACGATTCTGATGGATA+TGG | 0.409902 | 3.1:-76411166 | MS.gene054940:CDS |
| GAAACTGTATCATTCTGCTT+TGG | 0.421384 | 3.1:+76410305 | None:intergenic |
| TTTATGTTCTTCCATATGGC+TGG | 0.428708 | 3.1:+76410001 | None:intergenic |
| AACTTGGGTAATTCAATTAA+GGG | 0.430799 | 3.1:-76409174 | MS.gene054940:CDS |
| CACGAATCTCTCAGCCTCTC+TGG | 0.435442 | 3.1:-76409487 | MS.gene054940:CDS |
| ATCTACCACTCTTTGGAGAA+TGG | 0.438405 | 3.1:+76410885 | None:intergenic |
| CAATAGGTACAACGGACATT+TGG | 0.441250 | 3.1:-76410073 | MS.gene054940:CDS |
| ATGCATGGTTCCCAGTCAAT+AGG | 0.446023 | 3.1:-76410089 | MS.gene054940:CDS |
| AACATTTGATGATCTCTACT+TGG | 0.448605 | 3.1:+76410434 | None:intergenic |
| TTCACTAGAGAAAGAGAAGT+TGG | 0.452745 | 3.1:-76410647 | MS.gene054940:CDS |
| AAAGTTGTTGATAAAGTAAC+GGG | 0.454132 | 3.1:-76408838 | MS.gene054940:CDS |
| TTCATTAGAGAAAGAGAAGA+TGG | 0.454567 | 3.1:-76411034 | MS.gene054940:CDS |
| CCCATTCTTTCTTCAAGAGA+AGG | 0.459974 | 3.1:-76409657 | MS.gene054940:CDS |
| TTCTTATCACTCAAAATTGG+TGG | 0.461477 | 3.1:+76410152 | None:intergenic |
| TTGTCCAACTGCATGGCAGC+TGG | 0.462211 | 3.1:+76409695 | None:intergenic |
| AGAATGGTCCCTGCTCTCAT+AGG | 0.464550 | 3.1:+76410901 | None:intergenic |
| GTTGCAGGCATATGTGGAAA+AGG | 0.468566 | 3.1:-76407912 | MS.gene054940:intron |
| GATGGGGTCTTCCAGCCATA+TGG | 0.468810 | 3.1:-76410012 | MS.gene054940:CDS |
| CTAATGAATTCACTAGAGAA+AGG | 0.471067 | 3.1:-76410952 | MS.gene054940:CDS |
| ATAAAAGGCTAAGAGATGAT+AGG | 0.475061 | 3.1:-76410376 | MS.gene054940:CDS |
| CGGAATATTGGCCTCCTGGA+TGG | 0.475692 | 3.1:+76408813 | None:intergenic |
| ATCCTGCTACCCATGAGAGC+AGG | 0.476316 | 3.1:-76411000 | MS.gene054940:CDS |
| ATCCTGCTACCCATGAGAGC+AGG | 0.476316 | 3.1:-76411090 | MS.gene054940:CDS |
| ATCCATAATACTTGGTTCTC+CGG | 0.477069 | 3.1:+76409584 | None:intergenic |
| ATCCTACTAACCACGAGAGC+AGG | 0.477279 | 3.1:-76410730 | MS.gene054940:CDS |
| TCCCTGCTCTCATGGGTAGC+AGG | 0.477919 | 3.1:+76410998 | None:intergenic |
| TCCCTGCTCTCATGGGTAGC+AGG | 0.477919 | 3.1:+76411088 | None:intergenic |
| CCCATCCTATAATTCCAATC+AGG | 0.478103 | 3.1:+76410029 | None:intergenic |
| AGGAGCTTCTGAAACCAACT+TGG | 0.478431 | 3.1:-76408906 | MS.gene054940:CDS |
| TTCACTAGTGAAAGGGAAGA+TGG | 0.479255 | 3.1:-76410764 | MS.gene054940:CDS |
| TTCACTAGTGAAAGGGAAGA+TGG | 0.479255 | 3.1:-76410854 | MS.gene054940:CDS |
| TAACCCAGGAAGAGAAAACT+TGG | 0.485595 | 3.1:-76409190 | MS.gene054940:CDS |
| CCTTCTCTTGAAGAAAGAAT+GGG | 0.486829 | 3.1:+76409657 | None:intergenic |
| GAGCCCTATTAGAAGATTAA+GGG | 0.488698 | 3.1:-76410477 | MS.gene054940:CDS |
| CAAAACATGGACCAAAATGC+TGG | 0.493199 | 3.1:-76409003 | MS.gene054940:CDS |
| AGGTACAACGGACATTTGGC+CGG | 0.493224 | 3.1:-76410069 | MS.gene054940:CDS |
| GAGAATAAAAGTGGAAATGT+AGG | 0.496432 | 3.1:-76410257 | MS.gene054940:CDS |
| CTGAAACCAACTTGGAAAGA+AGG | 0.496600 | 3.1:-76408898 | MS.gene054940:CDS |
| GAGAATGGTCCCTGCTCTCA+TGG | 0.498339 | 3.1:+76410990 | None:intergenic |
| GAGAATGGTCCCTGCTCTCA+TGG | 0.498339 | 3.1:+76411080 | None:intergenic |
| TATTCTGTTGTGTTCAGAGA+TGG | 0.499211 | 3.1:+76409938 | None:intergenic |
| TGTCCGTTGTACCTATTGAC+TGG | 0.499259 | 3.1:+76410078 | None:intergenic |
| ATCCTACTACCCATGAGAGC+AGG | 0.503657 | 3.1:-76410820 | MS.gene054940:CDS |
| TCTGCGGAATATTGGCCTCC+TGG | 0.504700 | 3.1:+76408809 | None:intergenic |
| CATAAAAGTACCAAAGAGAA+TGG | 0.505662 | 3.1:-76409030 | MS.gene054940:CDS |
| CTTTGGATAGCAGAAAATAC+TGG | 0.505714 | 3.1:-76410119 | MS.gene054940:CDS |
| ATGCAGAAATGTCTCCTGAT+TGG | 0.505794 | 3.1:-76410043 | MS.gene054940:CDS |
| GAGAATAGTCCCTGCTCTCA+TGG | 0.506671 | 3.1:+76410810 | None:intergenic |
| TCCCTGCTCTCATGGGTAGT+AGG | 0.506862 | 3.1:+76410818 | None:intergenic |
| TCCCTGCTCTCGTGGTTAGT+AGG | 0.508353 | 3.1:+76410728 | None:intergenic |
| GAAGGAACATGATGTAAGCC+AGG | 0.509135 | 3.1:-76409976 | MS.gene054940:CDS |
| ATCTACCACTCTTAAGAGAA+TGG | 0.511468 | 3.1:+76410975 | None:intergenic |
| ATCTACCACTCTTAAGAGAA+TGG | 0.511468 | 3.1:+76411065 | None:intergenic |
| AAGCCTGAATCCATAATACT+TGG | 0.517448 | 3.1:+76409576 | None:intergenic |
| ATTTGCCTATAACGGATGGA+TGG | 0.518017 | 3.1:-76410211 | MS.gene054940:CDS |
| TGGATGAGTTCACTAGAGAA+AGG | 0.519337 | 3.1:-76411132 | MS.gene054940:CDS |
| AAAGCTTAACAAACTTGTAC+AGG | 0.519903 | 3.1:-76408746 | MS.gene054940:intron |
| AATCTAATCCATTTGCAGCC+TGG | 0.521014 | 3.1:-76409123 | MS.gene054940:CDS |
| TCCTGATTGGAATTATAGGA+TGG | 0.523046 | 3.1:-76410030 | MS.gene054940:CDS |
| CTAATGAATTCACTAGTGAA+AGG | 0.525451 | 3.1:-76410772 | MS.gene054940:CDS |
| CTAATGAATTCACTAGTGAA+AGG | 0.525451 | 3.1:-76410862 | MS.gene054940:CDS |
| TAAAGTAACGGGTACCATCC+AGG | 0.528168 | 3.1:-76408827 | MS.gene054940:CDS |
| AAGCTGATCGAGAATAAAAG+TGG | 0.529647 | 3.1:-76410266 | MS.gene054940:CDS |
| ATTCTGCTACCTATGAGAGC+AGG | 0.529969 | 3.1:-76410910 | MS.gene054940:CDS |
| TCATGGGTAGTAGGATATCT+GGG | 0.532080 | 3.1:+76410827 | None:intergenic |
| ACGTGCATTTAAATTTGCAT+TGG | 0.534604 | 3.1:-76408941 | MS.gene054940:CDS |
| TAATGAATTCACTAGAGAAA+GGG | 0.537037 | 3.1:-76410951 | MS.gene054940:CDS |
| TAATGAATTCACTAGTGAAA+GGG | 0.537448 | 3.1:-76410771 | MS.gene054940:CDS |
| TAATGAATTCACTAGTGAAA+GGG | 0.537448 | 3.1:-76410861 | MS.gene054940:CDS |
| TCGTGGTTAGTAGGATATCT+GGG | 0.538819 | 3.1:+76410737 | None:intergenic |
| CTGGCTCATATCCTTGGAGC+AGG | 0.539793 | 3.1:-76409468 | MS.gene054940:CDS |
| TTGCCTATAACGGATGGATG+GGG | 0.543758 | 3.1:-76410209 | MS.gene054940:CDS |
| ACTGATTTGCCTATAACGGA+TGG | 0.544476 | 3.1:-76410215 | MS.gene054940:CDS |
| GAAAGTTGTTGATAAAGTAA+CGG | 0.545410 | 3.1:-76408839 | MS.gene054940:CDS |
| GGATGAGTTCACTAGAGAAA+GGG | 0.551833 | 3.1:-76411131 | MS.gene054940:CDS |
| GTGCATGATTACGATTCTGA+TGG | 0.551916 | 3.1:-76411172 | MS.gene054940:CDS |
| TTTGCCTATAACGGATGGAT+GGG | 0.552603 | 3.1:-76410210 | MS.gene054940:CDS |
| TAACAATGAAGAGGTAGCTA+AGG | 0.555412 | 3.1:-76409076 | MS.gene054940:CDS |
| AAGGCTAAGAGATGATAGGT+GGG | 0.557111 | 3.1:-76410372 | MS.gene054940:CDS |
| CTTGACTTTGTCCAACTGCA+TGG | 0.557475 | 3.1:+76409688 | None:intergenic |
| CCTGATTGGAATTATAGGAT+GGG | 0.560325 | 3.1:-76410029 | MS.gene054940:CDS |
| GGTACAACGGACATTTGGCC+GGG | 0.563103 | 3.1:-76410068 | MS.gene054940:CDS |
| ACTTCCAGCTGCCATGCAGT+TGG | 0.563914 | 3.1:-76409699 | MS.gene054940:CDS |
| TCCTACTACCCATGAGAGCA+GGG | 0.565414 | 3.1:-76410819 | MS.gene054940:CDS |
| TGTTGATGCTATACACAGCC+AGG | 0.565431 | 3.1:-76409631 | MS.gene054940:CDS |
| AGAATAGTCCCTGCTCTCAT+GGG | 0.565639 | 3.1:+76410811 | None:intergenic |
| ATATGTGGAAAAGGTTCAGA+AGG | 0.567581 | 3.1:-76407903 | MS.gene054940:CDS |
| CTGATTGGAATTATAGGATG+GGG | 0.577469 | 3.1:-76410028 | MS.gene054940:CDS |
| AGAATGGTCCCTGCTCTCAT+GGG | 0.581139 | 3.1:+76410991 | None:intergenic |
| AGAATGGTCCCTGCTCTCAT+GGG | 0.581139 | 3.1:+76411081 | None:intergenic |
| TCCTGCTACCCATGAGAGCA+GGG | 0.581326 | 3.1:-76410999 | MS.gene054940:CDS |
| TCCTGCTACCCATGAGAGCA+GGG | 0.581326 | 3.1:-76411089 | MS.gene054940:CDS |
| GGAGACATTTCTGCATCACC+CGG | 0.581677 | 3.1:+76410050 | None:intergenic |
| GCAGCTGCTGACCTGCTCCA+AGG | 0.582262 | 3.1:+76409457 | None:intergenic |
| GGCATGGTTTAGATAAGAGC+GGG | 0.583797 | 3.1:-76410187 | MS.gene054940:CDS |
| GTCCGTTGTACCTATTGACT+GGG | 0.584696 | 3.1:+76410079 | None:intergenic |
| AAAGGCTAAGAGATGATAGG+TGG | 0.588164 | 3.1:-76410373 | MS.gene054940:CDS |
| ATGAAGAGGTAGCTAAGGAA+AGG | 0.588800 | 3.1:-76409071 | MS.gene054940:CDS |
| TCCTACTAACCACGAGAGCA+GGG | 0.589630 | 3.1:-76410729 | MS.gene054940:CDS |
| TTTACTTGGAGGAATGGCTG+GGG | 0.589692 | 3.1:+76409248 | None:intergenic |
| AACAGAATACAACTTGCTCC+AGG | 0.591084 | 3.1:-76409924 | MS.gene054940:intron |
| AAGCAAACAAAGGAAATGAA+AGG | 0.591168 | 3.1:-76408967 | MS.gene054940:CDS |
| AATACTGGTGCCAACATGCA+TGG | 0.593621 | 3.1:-76410104 | MS.gene054940:CDS |
| TTCTGCTACCTATGAGAGCA+GGG | 0.594783 | 3.1:-76410909 | MS.gene054940:CDS |
| ATCACTCTTGACATGTTCTG+AGG | 0.596680 | 3.1:+76409146 | None:intergenic |
| TCATAGGTAGCAGAATATCT+GGG | 0.598574 | 3.1:+76410917 | None:intergenic |
| CTGCGACAGAATTTCTACTT+CGG | 0.600476 | 3.1:+76409218 | None:intergenic |
| TAGTGCGGTTAGGCACATGC+CGG | 0.601071 | 3.1:+76410585 | None:intergenic |
| AGAGAATGGTCCTCAAAACA+TGG | 0.604039 | 3.1:-76409016 | MS.gene054940:CDS |
| GGAGCATCAATAGTGCGGTT+AGG | 0.607218 | 3.1:+76410575 | None:intergenic |
| TTACTTGGAGGAATGGCTGG+GGG | 0.607949 | 3.1:+76409249 | None:intergenic |
| TATGGAAGAACATAAACAGA+AGG | 0.610346 | 3.1:-76409994 | MS.gene054940:CDS |
| TGCAGTTGGACAAAGTCAAG+TGG | 0.611494 | 3.1:-76409685 | MS.gene054940:CDS |
| CTCACGATACGCAAGCATGT+AGG | 0.613211 | 3.1:-76410499 | MS.gene054940:CDS |
| ATCAGTAAATTCTGGCTCTG+TGG | 0.613647 | 3.1:+76410232 | None:intergenic |
| GAGAAAGAGAAGTTGGCAGA+AGG | 0.615126 | 3.1:-76410640 | MS.gene054940:CDS |
| AAGTAGAGATCATCAAATGT+TGG | 0.616100 | 3.1:-76410432 | MS.gene054940:CDS |
| CAATAAGGATAACAATGAAG+AGG | 0.623098 | 3.1:-76409085 | MS.gene054940:CDS |
| TGCCTATAACGGATGGATGG+GGG | 0.624741 | 3.1:-76410208 | MS.gene054940:CDS |
| AAGAATAGTCCCTGCTCTCG+TGG | 0.625384 | 3.1:+76410720 | None:intergenic |
| CTGTCGCAGTTGTCTAACCC+AGG | 0.633065 | 3.1:-76409204 | MS.gene054940:CDS |
| TGATGATGCCAAGCAAACAA+AGG | 0.634153 | 3.1:-76408977 | MS.gene054940:CDS |
| TGCAAGGAGCATCAATAGTG+CGG | 0.638490 | 3.1:+76410570 | None:intergenic |
| AGGGACTATTCTCTTAAGAG+TGG | 0.644286 | 3.1:-76410800 | MS.gene054940:CDS |
| TGGCAGCTGGAAGTATGCAA+AGG | 0.646432 | 3.1:+76409708 | None:intergenic |
| CAAAAGAATGCTGATGCAAG+TGG | 0.647309 | 3.1:-76409276 | MS.gene054940:CDS |
| GGCTGATCCTGATAGAGTCG+AGG | 0.649107 | 3.1:-76410333 | MS.gene054940:CDS |
| AAGGAACATGATGTAAGCCA+GGG | 0.656718 | 3.1:-76409975 | MS.gene054940:CDS |
| AGGGACCATTCTCTTAAGAG+TGG | 0.657090 | 3.1:-76410980 | MS.gene054940:CDS |
| AGGGACCATTCTCTTAAGAG+TGG | 0.657090 | 3.1:-76411070 | MS.gene054940:CDS |
| AGGGACCATTCTCCAAAGAG+TGG | 0.659573 | 3.1:-76410890 | MS.gene054940:CDS |
| TTTGCAGCCTGGTCAAAACA+CGG | 0.660051 | 3.1:-76409112 | MS.gene054940:CDS |
| AACCCAGGAAGAGAAAACTT+GGG | 0.660535 | 3.1:-76409189 | MS.gene054940:CDS |
| TGACTGGGAACCATGCATGT+TGG | 0.671378 | 3.1:+76410094 | None:intergenic |
| TGGCTAGATATGTACCACCC+TGG | 0.672330 | 3.1:+76409958 | None:intergenic |
| TTTAAAGCAGCATATAGCTG+CGG | 0.673413 | 3.1:+76409435 | None:intergenic |
| TTCCCAGTCAATAGGTACAA+CGG | 0.683573 | 3.1:-76410081 | MS.gene054940:CDS |
| ACTCTTGACATGTTCTGAGG+AGG | 0.684272 | 3.1:+76409149 | None:intergenic |
| ACTAGAGAAAGGGAAAATGG+AGG | 0.685470 | 3.1:-76410941 | MS.gene054940:CDS |
| GAACATGATGTAAGCCAGGG+TGG | 0.694356 | 3.1:-76409972 | MS.gene054940:CDS |
| TATGTGGAAAAGGTTCAGAA+GGG | 0.694565 | 3.1:-76407902 | MS.gene054940:CDS |
| TCCAAGGATATGAGCCAGAG+AGG | 0.701534 | 3.1:+76409473 | None:intergenic |
| TCTACTGAGCAAAAGTACAC+CGG | 0.702328 | 3.1:-76409603 | MS.gene054940:CDS |
| GTGGGGTTCAGATAGTGACA+TGG | 0.704274 | 3.1:-76410354 | MS.gene054940:CDS |
| AGGCTAAGAGATGATAGGTG+GGG | 0.711837 | 3.1:-76410371 | MS.gene054940:CDS |
| GGGCATGGTTTAGATAAGAG+CGG | 0.723162 | 3.1:-76410188 | MS.gene054940:CDS |
| AGTAACGGGTACCATCCAGG+AGG | 0.795570 | 3.1:-76408824 | MS.gene054940:CDS |
| GCAGCCTGGTCAAAACACGG+TGG | 0.812953 | 3.1:-76409109 | MS.gene054940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAATTCAATGATTTC+CGG | + | chr3.1:76410471-76410490 | None:intergenic | 15.0% |
| !!! | AATTTTGTGTTAAATTTACA+AGG | + | chr3.1:76409228-76409247 | None:intergenic | 15.0% |
| !!! | ATTTTGTGTTAAATTTACAA+GGG | + | chr3.1:76409227-76409246 | None:intergenic | 15.0% |
| !! | GATCTACATATATAAATCTT+GGG | + | chr3.1:76410569-76410588 | None:intergenic | 20.0% |
| !! | TGATCTACATATATAAATCT+TGG | + | chr3.1:76410570-76410589 | None:intergenic | 20.0% |
| !! | TTTAAATTCTCATGAATTGA+AGG | - | chr3.1:76409673-76409692 | MS.gene054940:CDS | 20.0% |
| !!! | GTTTTGAAAATGACAAATAT+TGG | + | chr3.1:76410324-76410343 | None:intergenic | 20.0% |
| ! | AAAAAGAGGAGAGTTATTAT+AGG | + | chr3.1:76411158-76411177 | None:intergenic | 25.0% |
| ! | AAACTTGGGTAATTCAATTA+AGG | - | chr3.1:76409916-76409935 | MS.gene054940:intron | 25.0% |
| ! | AAAGCATAATCTTGATGTTA+TGG | - | chr3.1:76410490-76410509 | MS.gene054940:CDS | 25.0% |
| ! | AACTTGGGTAATTCAATTAA+GGG | - | chr3.1:76409917-76409936 | MS.gene054940:intron | 25.0% |
| ! | AAGCATAATCTTGATGTTAT+GGG | - | chr3.1:76410491-76410510 | MS.gene054940:CDS | 25.0% |
| ! | AAGCTATCATAAATCTCTAA+CGG | + | chr3.1:76411047-76411066 | None:intergenic | 25.0% |
| ! | AATTGGAAAAATAACTAGAC+TGG | + | chr3.1:76410860-76410879 | None:intergenic | 25.0% |
| ! | ACATGTTAGATTATCTAAAC+TGG | + | chr3.1:76410676-76410695 | None:intergenic | 25.0% |
| ! | AGAGTTATTATAGGAAATGA+TGG | + | chr3.1:76411149-76411168 | None:intergenic | 25.0% |
| ! | GGAATTCTTCAAAAACAAAA+TGG | + | chr3.1:76410395-76410414 | None:intergenic | 25.0% |
| ! | TAATGAATTCACTAGAGAAA+GGG | - | chr3.1:76408140-76408159 | MS.gene054940:intron | 25.0% |
| ! | TAATGAATTCACTAGTGAAA+GGG | - | chr3.1:76408230-76408249 | MS.gene054940:intron | 25.0% |
| !! | AAACTACTTCTATTGTTTTC+AGG | + | chr3.1:76410610-76410629 | None:intergenic | 25.0% |
| !! | AAAGTTGTTGATAAAGTAAC+GGG | - | chr3.1:76410253-76410272 | MS.gene054940:CDS | 25.0% |
| !! | GAAAGTTGTTGATAAAGTAA+CGG | - | chr3.1:76410252-76410271 | MS.gene054940:CDS | 25.0% |
| !! | TATTATAGGAAATGATGGAA+AGG | + | chr3.1:76411144-76411163 | None:intergenic | 25.0% |
| !! | TTTTACTGTAATTGTTGCTA+AGG | - | chr3.1:76410982-76411001 | MS.gene054940:CDS | 25.0% |
| !!! | AGTTGTAGAAGTATTAATGT+GGG | - | chr3.1:76410711-76410730 | MS.gene054940:CDS | 25.0% |
| !!! | ATTTACTGATTTGCCTATAA+CGG | - | chr3.1:76408872-76408891 | MS.gene054940:CDS | 25.0% |
| !!! | TAGTTGTAGAAGTATTAATG+TGG | - | chr3.1:76410710-76410729 | MS.gene054940:CDS | 25.0% |
| AAACGCCATAGTGTAATAAT+TGG | + | chr3.1:76410757-76410776 | None:intergenic | 30.0% | |
| AAAGCTTAACAAACTTGTAC+AGG | - | chr3.1:76410345-76410364 | MS.gene054940:CDS | 30.0% | |
| AAGCAAACAAAGGAAATGAA+AGG | - | chr3.1:76410124-76410143 | MS.gene054940:CDS | 30.0% | |
| AAGTAGAGATCATCAAATGT+TGG | - | chr3.1:76408659-76408678 | MS.gene054940:intron | 30.0% | |
| AATCTTGATGTTATGGGATT+GGG | - | chr3.1:76410497-76410516 | MS.gene054940:CDS | 30.0% | |
| ACGTGCATTTAAATTTGCAT+TGG | - | chr3.1:76410150-76410169 | MS.gene054940:CDS | 30.0% | |
| ACTCCATTAGTCCAAATAAA+AGG | - | chr3.1:76408700-76408719 | MS.gene054940:intron | 30.0% | |
| AGAAAAAGTAGAAGATGACT+TGG | + | chr3.1:76410416-76410435 | None:intergenic | 30.0% | |
| AGTGAATTTAGATGAAACTC+CGG | - | chr3.1:76410449-76410468 | MS.gene054940:CDS | 30.0% | |
| ATAAAAGGCTAAGAGATGAT+AGG | - | chr3.1:76408715-76408734 | MS.gene054940:intron | 30.0% | |
| ATAGGCAAATCAGTAAATTC+TGG | + | chr3.1:76408870-76408889 | None:intergenic | 30.0% | |
| ATGGTCCAATTATTACACTA+TGG | - | chr3.1:76410749-76410768 | MS.gene054940:CDS | 30.0% | |
| CAATAAGGATAACAATGAAG+AGG | - | chr3.1:76410006-76410025 | MS.gene054940:CDS | 30.0% | |
| CATCCCTTAATCTTCTAATA+GGG | + | chr3.1:76408620-76408639 | None:intergenic | 30.0% | |
| CTAATGAATTCACTAGAGAA+AGG | - | chr3.1:76408139-76408158 | MS.gene054940:intron | 30.0% | |
| CTAATGAATTCACTAGTGAA+AGG | - | chr3.1:76408229-76408248 | MS.gene054940:intron | 30.0% | |
| CTGAATCTACATTTACGTTT+GGG | - | chr3.1:76411067-76411086 | MS.gene054940:CDS | 30.0% | |
| GAAAGGAAAAATTCTCAAGA+TGG | - | chr3.1:76410037-76410056 | MS.gene054940:CDS | 30.0% | |
| GAGAATAAAAGTGGAAATGT+AGG | - | chr3.1:76408834-76408853 | MS.gene054940:CDS | 30.0% | |
| TAATCTTGATGTTATGGGAT+TGG | - | chr3.1:76410496-76410515 | MS.gene054940:CDS | 30.0% | |
| TATGGAAGAACATAAACAGA+AGG | - | chr3.1:76409097-76409116 | MS.gene054940:CDS | 30.0% | |
| TCATCCCTTAATCTTCTAAT+AGG | + | chr3.1:76408621-76408640 | None:intergenic | 30.0% | |
| TCCAATTCAACTAAATCTCA+CGG | - | chr3.1:76410873-76410892 | MS.gene054940:CDS | 30.0% | |
| TCCTTCTTATCACTCAAAAT+TGG | + | chr3.1:76408945-76408964 | None:intergenic | 30.0% | |
| TCTGAATCTACATTTACGTT+TGG | - | chr3.1:76411066-76411085 | MS.gene054940:CDS | 30.0% | |
| TCTGTTTATGTTCTTCCATA+TGG | + | chr3.1:76409097-76409116 | None:intergenic | 30.0% | |
| TGCTCAATACTATCATTCAT+TGG | + | chr3.1:76409797-76409816 | None:intergenic | 30.0% | |
| TGGATATGGTAAAGTTTCTA+TGG | - | chr3.1:76407939-76407958 | MS.gene054940:intron | 30.0% | |
| TTCATTAGAGAAAGAGAAGA+TGG | - | chr3.1:76408057-76408076 | MS.gene054940:intron | 30.0% | |
| TTCTTATCACTCAAAATTGG+TGG | + | chr3.1:76408942-76408961 | None:intergenic | 30.0% | |
| TTGATGCATGTGATTGAAAT+AGG | + | chr3.1:76409737-76409756 | None:intergenic | 30.0% | |
| ! | AACATTTGATGATCTCTACT+TGG | + | chr3.1:76408660-76408679 | None:intergenic | 30.0% |
| ! | AGAGATAATTCTTTTCAGCA+GGG | - | chr3.1:76408477-76408496 | MS.gene054940:intron | 30.0% |
| ! | ATTTTACCTTCTTTCCAAGT+TGG | + | chr3.1:76410202-76410221 | None:intergenic | 30.0% |
| ! | CGAATATGGCAAAGTTTTTA+TGG | - | chr3.1:76408416-76408435 | MS.gene054940:intron | 30.0% |
| ! | TCATTGGATCATACTGTTTT+GGG | + | chr3.1:76409781-76409800 | None:intergenic | 30.0% |
| ! | TTCATTGGATCATACTGTTT+TGG | + | chr3.1:76409782-76409801 | None:intergenic | 30.0% |
| ! | TTTCATTTCCTTTGTTTGCT+TGG | + | chr3.1:76410125-76410144 | None:intergenic | 30.0% |
| !! | AAACACCAGTAGAAAGTATT+AGG | + | chr3.1:76409322-76409341 | None:intergenic | 30.0% |
| !! | AATAGTTTTACTTGGAGGAA+TGG | + | chr3.1:76409852-76409871 | None:intergenic | 30.0% |
| !! | ACCAATTTTGAGTGATAAGA+AGG | - | chr3.1:76408941-76408960 | MS.gene054940:CDS | 30.0% |
| !! | CATAAAAGTACCAAAGAGAA+TGG | - | chr3.1:76410061-76410080 | MS.gene054940:CDS | 30.0% |
| !! | TAGCCTTTTATTTGGACTAA+TGG | + | chr3.1:76408706-76408725 | None:intergenic | 30.0% |
| !! | TCATCTCTTAGCCTTTTATT+TGG | + | chr3.1:76408714-76408733 | None:intergenic | 30.0% |
| !! | TGTACAAGTTTGTTAAGCTT+TGG | + | chr3.1:76410346-76410365 | None:intergenic | 30.0% |
| !!! | TCAATTTTTTCTTGTGTCTG+CGG | + | chr3.1:76410301-76410320 | None:intergenic | 30.0% |
| AAGCAGAATGATACAGTTTC+TGG | - | chr3.1:76408789-76408808 | MS.gene054940:CDS | 35.0% | |
| AAGCCTGAATCCATAATACT+TGG | + | chr3.1:76409518-76409537 | None:intergenic | 35.0% | |
| AAGCTGATCGAGAATAAAAG+TGG | - | chr3.1:76408825-76408844 | MS.gene054940:CDS | 35.0% | |
| ACAGACCTAATACTTTCTAC+TGG | - | chr3.1:76409314-76409333 | MS.gene054940:CDS | 35.0% | |
| ATAAGAAGGAAGCTGATCTT+TGG | - | chr3.1:76408955-76408974 | MS.gene054940:CDS | 35.0% | |
| ATATGCCTGCAACAAAAAAG+AGG | + | chr3.1:76411172-76411191 | None:intergenic | 35.0% | |
| ATATGTGGAAAAGGTTCAGA+AGG | - | chr3.1:76411188-76411207 | MS.gene054940:CDS | 35.0% | |
| ATCTACCACTCTTAAGAGAA+TGG | + | chr3.1:76408029-76408048 | None:intergenic | 35.0% | |
| CCACTAGCAAAAAATTTGCA+AGG | + | chr3.1:76408540-76408559 | None:intergenic | 35.0% | |
| CCTGATTGGAATTATAGGAT+GGG | - | chr3.1:76409062-76409081 | MS.gene054940:CDS | 35.0% | |
| CCTTCTCTTGAAGAAAGAAT+GGG | + | chr3.1:76409437-76409456 | None:intergenic | 35.0% | |
| CTGATTGGAATTATAGGATG+GGG | - | chr3.1:76409063-76409082 | MS.gene054940:CDS | 35.0% | |
| CTTTGGATAGCAGAAAATAC+TGG | - | chr3.1:76408972-76408991 | MS.gene054940:CDS | 35.0% | |
| GAAACTGTATCATTCTGCTT+TGG | + | chr3.1:76408789-76408808 | None:intergenic | 35.0% | |
| GAACCAAGTATTATGGATTC+AGG | - | chr3.1:76409512-76409531 | MS.gene054940:CDS | 35.0% | |
| GAAGATTAAGGGATGATAGA+TGG | - | chr3.1:76408625-76408644 | MS.gene054940:intron | 35.0% | |
| GAGCCCTATTAGAAGATTAA+GGG | - | chr3.1:76408614-76408633 | MS.gene054940:intron | 35.0% | |
| GGTAGATCTAATGACGAATA+TGG | - | chr3.1:76408402-76408421 | MS.gene054940:intron | 35.0% | |
| GTCGAAATGGTAAACATTGT+AGG | - | chr3.1:76408565-76408584 | MS.gene054940:intron | 35.0% | |
| TAACAATGAAGAGGTAGCTA+AGG | - | chr3.1:76410015-76410034 | MS.gene054940:CDS | 35.0% | |
| TAATTGGACCATCCTCTATT+TGG | + | chr3.1:76410741-76410760 | None:intergenic | 35.0% | |
| TATGTGGAAAAGGTTCAGAA+GGG | - | chr3.1:76411189-76411208 | MS.gene054940:CDS | 35.0% | |
| TATTCTGTTGTGTTCAGAGA+TGG | + | chr3.1:76409156-76409175 | None:intergenic | 35.0% | |
| TCATAGGTAGCAGAATATCT+GGG | + | chr3.1:76408177-76408196 | None:intergenic | 35.0% | |
| TCATTAGATCTACCACTCTT+TGG | + | chr3.1:76408036-76408055 | None:intergenic | 35.0% | |
| TCCTGATTGGAATTATAGGA+TGG | - | chr3.1:76409061-76409080 | MS.gene054940:CDS | 35.0% | |
| TGTCTCCTGATTGGAATTAT+AGG | - | chr3.1:76409057-76409076 | MS.gene054940:CDS | 35.0% | |
| TTCACTAGAGAAAGAGAAGT+TGG | - | chr3.1:76408444-76408463 | MS.gene054940:intron | 35.0% | |
| TTCACTAGAGAAAGGGAAAA+TGG | - | chr3.1:76408147-76408166 | MS.gene054940:intron | 35.0% | |
| TTTATGTTCTTCCATATGGC+TGG | + | chr3.1:76409093-76409112 | None:intergenic | 35.0% | |
| ! | ACTTGAATTTTTGCTTGGGA+AGG | + | chr3.1:76409704-76409723 | None:intergenic | 35.0% |
| ! | AGCAGGGACTATTCTTTTAA+GGG | - | chr3.1:76408378-76408397 | MS.gene054940:intron | 35.0% |
| ! | AGGCACTTGAATTTTTGCTT+GGG | + | chr3.1:76409708-76409727 | None:intergenic | 35.0% |
| ! | ATCCATAATACTTGGTTCTC+CGG | + | chr3.1:76409510-76409529 | None:intergenic | 35.0% |
| ! | CAGAGATAATTCTTTTCAGC+AGG | - | chr3.1:76408476-76408495 | MS.gene054940:intron | 35.0% |
| ! | CTTTCTACTGGTGTTTTTCT+AGG | - | chr3.1:76409326-76409345 | MS.gene054940:CDS | 35.0% |
| ! | GATTACGATTCTGATGGATA+TGG | - | chr3.1:76407925-76407944 | MS.gene054940:intron | 35.0% |
| ! | TACATTTACGTTTGGGACAT+TGG | - | chr3.1:76411074-76411093 | MS.gene054940:CDS | 35.0% |
| ! | TTTAAAGCAGCATATAGCTG+CGG | + | chr3.1:76409659-76409678 | None:intergenic | 35.0% |
| !! | ACTTCGGCAATAGTTTTACT+TGG | + | chr3.1:76409860-76409879 | None:intergenic | 35.0% |
| !! | ATTGTTTTCAGGAAGTGTGA+CGG | + | chr3.1:76410599-76410618 | None:intergenic | 35.0% |
| !! | TTGCTTACTACGTTTTGAAC+TGG | + | chr3.1:76409566-76409585 | None:intergenic | 35.0% |
| !! | TTTTTCAATCGAACCCTTGA+CGG | - | chr3.1:76410649-76410668 | MS.gene054940:CDS | 35.0% |
| !!! | ATACTGTTTTGGGAGTTCAA+CGG | + | chr3.1:76409771-76409790 | None:intergenic | 35.0% |
| !!! | CCTTGCAAATTTTTTGCTAG+TGG | - | chr3.1:76408537-76408556 | MS.gene054940:intron | 35.0% |
| !!! | TTTTTTGTTGCAGGCATATG+TGG | - | chr3.1:76411173-76411192 | MS.gene054940:CDS | 35.0% |
| AAAGGCTAAGAGATGATAGG+TGG | - | chr3.1:76408718-76408737 | MS.gene054940:intron | 40.0% | |
| AACCCAGGAAGAGAAAACTT+GGG | - | chr3.1:76409902-76409921 | MS.gene054940:intron | 40.0% | |
| AAGGAACATGATGTAAGCCA+GGG | - | chr3.1:76409116-76409135 | MS.gene054940:CDS | 40.0% | |
| AAGGCTAAGAGATGATAGGT+GGG | - | chr3.1:76408719-76408738 | MS.gene054940:intron | 40.0% | |
| AATCTAATCCATTTGCAGCC+TGG | - | chr3.1:76409968-76409987 | MS.gene054940:CDS | 40.0% | |
| AATGTGGGTACACCAAATAG+AGG | - | chr3.1:76410726-76410745 | MS.gene054940:CDS | 40.0% | |
| ACTAGAGAAAGGGAAAATGG+AGG | - | chr3.1:76408150-76408169 | MS.gene054940:intron | 40.0% | |
| AGAGAATGGTCCTCAAAACA+TGG | - | chr3.1:76410075-76410094 | MS.gene054940:CDS | 40.0% | |
| AGGGACTATTCTCTTAAGAG+TGG | - | chr3.1:76408291-76408310 | MS.gene054940:intron | 40.0% | |
| ATAGCTGCACACCAATCAAA+CGG | + | chr3.1:76411103-76411122 | None:intergenic | 40.0% | |
| ATCACTCTTGACATGTTCTG+AGG | + | chr3.1:76409948-76409967 | None:intergenic | 40.0% | |
| ATCCATGCATCTAGCATACA+GGG | - | chr3.1:76410778-76410797 | MS.gene054940:CDS | 40.0% | |
| ATGAAGAGGTAGCTAAGGAA+AGG | - | chr3.1:76410020-76410039 | MS.gene054940:CDS | 40.0% | |
| ATGCAGAAATGTCTCCTGAT+TGG | - | chr3.1:76409048-76409067 | MS.gene054940:CDS | 40.0% | |
| CAAAACATGGACCAAAATGC+TGG | - | chr3.1:76410088-76410107 | MS.gene054940:CDS | 40.0% | |
| CAAAAGAATGCTGATGCAAG+TGG | - | chr3.1:76409815-76409834 | MS.gene054940:intron | 40.0% | |
| CAATAGGTACAACGGACATT+TGG | - | chr3.1:76409018-76409037 | MS.gene054940:CDS | 40.0% | |
| CCCATCCTATAATTCCAATC+AGG | + | chr3.1:76409065-76409084 | None:intergenic | 40.0% | |
| CCCATTCTTTCTTCAAGAGA+AGG | - | chr3.1:76409434-76409453 | MS.gene054940:CDS | 40.0% | |
| CTCATAGGTAGCAGAATATC+TGG | + | chr3.1:76408178-76408197 | None:intergenic | 40.0% | |
| CTGAAACCAACTTGGAAAGA+AGG | - | chr3.1:76410193-76410212 | MS.gene054940:CDS | 40.0% | |
| CTGCGACAGAATTTCTACTT+CGG | + | chr3.1:76409876-76409895 | None:intergenic | 40.0% | |
| GCCGTGAGATTTAGTTGAAT+TGG | + | chr3.1:76410877-76410896 | None:intergenic | 40.0% | |
| GCCTTCTCTTGAAGAAAGAA+TGG | + | chr3.1:76409438-76409457 | None:intergenic | 40.0% | |
| GCTAGTGGAAATTGTCGAAA+TGG | - | chr3.1:76408552-76408571 | MS.gene054940:intron | 40.0% | |
| GGAGCCCTATTAGAAGATTA+AGG | - | chr3.1:76408613-76408632 | MS.gene054940:intron | 40.0% | |
| GGATGAGTTCACTAGAGAAA+GGG | - | chr3.1:76407960-76407979 | MS.gene054940:intron | 40.0% | |
| GTGCATGATTACGATTCTGA+TGG | - | chr3.1:76407919-76407938 | MS.gene054940:intron | 40.0% | |
| TAACCCAGGAAGAGAAAACT+TGG | - | chr3.1:76409901-76409920 | MS.gene054940:intron | 40.0% | |
| TATCTAAACTGGACCGTCAA+GGG | + | chr3.1:76410665-76410684 | None:intergenic | 40.0% | |
| TCAAAACACGGTGGTCAATA+AGG | - | chr3.1:76409991-76410010 | MS.gene054940:CDS | 40.0% | |
| TCATGGGTAGTAGGATATCT+GGG | + | chr3.1:76408267-76408286 | None:intergenic | 40.0% | |
| TCGTGGTTAGTAGGATATCT+GGG | + | chr3.1:76408357-76408376 | None:intergenic | 40.0% | |
| TGGATGAGTTCACTAGAGAA+AGG | - | chr3.1:76407959-76407978 | MS.gene054940:intron | 40.0% | |
| TTATCTAAACTGGACCGTCA+AGG | + | chr3.1:76410666-76410685 | None:intergenic | 40.0% | |
| TTCACTAGTGAAAGGGAAGA+TGG | - | chr3.1:76408237-76408256 | MS.gene054940:intron | 40.0% | |
| TTCCCAGTCAATAGGTACAA+CGG | - | chr3.1:76409010-76409029 | MS.gene054940:CDS | 40.0% | |
| TTCTTGTGTCTGCGGAATAT+TGG | + | chr3.1:76410293-76410312 | None:intergenic | 40.0% | |
| TTTGCTCAGTAGATACTTCC+TGG | + | chr3.1:76409481-76409500 | None:intergenic | 40.0% | |
| TTTGTTTGCTTGGCATCATC+AGG | + | chr3.1:76410115-76410134 | None:intergenic | 40.0% | |
| ! | AACAGAATACAACTTGCTCC+AGG | - | chr3.1:76409167-76409186 | MS.gene054940:CDS | 40.0% |
| ! | ATCTACCACTCTTTGGAGAA+TGG | + | chr3.1:76408209-76408228 | None:intergenic | 40.0% |
| ! | ATTGGGCACTTGCTGAAAAA+TGG | - | chr3.1:76410514-76410533 | MS.gene054940:CDS | 40.0% |
| ! | CAGGCACTTGAATTTTTGCT+TGG | + | chr3.1:76409709-76409728 | None:intergenic | 40.0% |
| ! | GAGCAGGGACTATTCTTTTA+AGG | - | chr3.1:76408377-76408396 | MS.gene054940:intron | 40.0% |
| ! | GATAATTCTTTTCAGCAGGG+TGG | - | chr3.1:76408480-76408499 | MS.gene054940:intron | 40.0% |
| ! | GTGATTGAAATAGGCATTGC+AGG | + | chr3.1:76409728-76409747 | None:intergenic | 40.0% |
| ! | TACCCAAGTTTTCTCTTCCT+GGG | + | chr3.1:76409907-76409926 | None:intergenic | 40.0% |
| ! | TCTACTGAGCAAAAGTACAC+CGG | - | chr3.1:76409488-76409507 | MS.gene054940:CDS | 40.0% |
| ! | TGATGATGCCAAGCAAACAA+AGG | - | chr3.1:76410114-76410133 | MS.gene054940:CDS | 40.0% |
| ! | TTACCCAAGTTTTCTCTTCC+TGG | + | chr3.1:76409908-76409927 | None:intergenic | 40.0% |
| ! | TTGGGCACTTGCTGAAAAAT+GGG | - | chr3.1:76410515-76410534 | MS.gene054940:CDS | 40.0% |
| ! | TTTTACTTGGAGGAATGGCT+GGG | + | chr3.1:76409847-76409866 | None:intergenic | 40.0% |
| !! | ACTGATTTGCCTATAACGGA+TGG | - | chr3.1:76408876-76408895 | MS.gene054940:CDS | 40.0% |
| !! | AGGGACTATTCTTTTAAGGG+CGG | - | chr3.1:76408381-76408400 | MS.gene054940:intron | 40.0% |
| !! | ATCAGTAAATTCTGGCTCTG+TGG | + | chr3.1:76408862-76408881 | None:intergenic | 40.0% |
| !! | ATTTGCCTATAACGGATGGA+TGG | - | chr3.1:76408880-76408899 | MS.gene054940:CDS | 40.0% |
| !! | CTTACTACGTTTTGAACTGG+AGG | + | chr3.1:76409563-76409582 | None:intergenic | 40.0% |
| !! | GCATTTTGGTCCATGTTTTG+AGG | + | chr3.1:76410088-76410107 | None:intergenic | 40.0% |
| !! | TCGGCAATAGTTTTACTTGG+AGG | + | chr3.1:76409857-76409876 | None:intergenic | 40.0% |
| !! | TGCATTGGCTGAGTTTGTTA+AGG | - | chr3.1:76410165-76410184 | MS.gene054940:CDS | 40.0% |
| !! | TTTGCCTATAACGGATGGAT+GGG | - | chr3.1:76408881-76408900 | MS.gene054940:CDS | 40.0% |
| !!! | ACTCTCCTCTTTTTTGTTGC+AGG | - | chr3.1:76411164-76411183 | MS.gene054940:CDS | 40.0% |
| !!! | GTTTTGAGGACCATTCTCTT+TGG | + | chr3.1:76410074-76410093 | None:intergenic | 40.0% |
| AACTTGTACAGGTCAGTCAG+TGG | - | chr3.1:76410356-76410375 | MS.gene054940:CDS | 45.0% | |
| AGAATAGTCCCTGCTCTCAT+GGG | + | chr3.1:76408283-76408302 | None:intergenic | 45.0% | |
| AGATCAAGCACGTGTTTACC+TGG | + | chr3.1:76409188-76409207 | None:intergenic | 45.0% | |
| AGGCTAAGAGATGATAGGTG+GGG | - | chr3.1:76408720-76408739 | MS.gene054940:intron | 45.0% | |
| AGGGACCATTCTCTTAAGAG+TGG | - | chr3.1:76408021-76408040 | MS.gene054940:intron | 45.0% | |
| ATGCATGGTTCCCAGTCAAT+AGG | - | chr3.1:76409002-76409021 | MS.gene054940:CDS | 45.0% | |
| ATTCTGCTACCTATGAGAGC+AGG | - | chr3.1:76408181-76408200 | MS.gene054940:intron | 45.0% | |
| CACCGGAGAACCAAGTATTA+TGG | - | chr3.1:76409505-76409524 | MS.gene054940:CDS | 45.0% | |
| CTCATGGGTAGTAGGATATC+TGG | + | chr3.1:76408268-76408287 | None:intergenic | 45.0% | |
| CTCGTGGTTAGTAGGATATC+TGG | + | chr3.1:76408358-76408377 | None:intergenic | 45.0% | |
| CTTGACTTTGTCCAACTGCA+TGG | + | chr3.1:76409406-76409425 | None:intergenic | 45.0% | |
| GAAGGAACATGATGTAAGCC+AGG | - | chr3.1:76409115-76409134 | MS.gene054940:CDS | 45.0% | |
| GACATTGGTCACCGTTTGAT+TGG | - | chr3.1:76411089-76411108 | MS.gene054940:CDS | 45.0% | |
| GAGAAAGAGAAGTTGGCAGA+AGG | - | chr3.1:76408451-76408470 | MS.gene054940:intron | 45.0% | |
| GATCCATGCATCTAGCATAC+AGG | - | chr3.1:76410777-76410796 | MS.gene054940:CDS | 45.0% | |
| GCATCTAGCATACAGGGAAA+AGG | - | chr3.1:76410784-76410803 | MS.gene054940:CDS | 45.0% | |
| GGCATGGTTTAGATAAGAGC+GGG | - | chr3.1:76408904-76408923 | MS.gene054940:CDS | 45.0% | |
| GGGCATGGTTTAGATAAGAG+CGG | - | chr3.1:76408903-76408922 | MS.gene054940:CDS | 45.0% | |
| GTTGCAGGCATATGTGGAAA+AGG | - | chr3.1:76411179-76411198 | MS.gene054940:CDS | 45.0% | |
| TGCAGTTGGACAAAGTCAAG+TGG | - | chr3.1:76409406-76409425 | MS.gene054940:CDS | 45.0% | |
| TGGGTACACCAAATAGAGGA+TGG | - | chr3.1:76410730-76410749 | MS.gene054940:CDS | 45.0% | |
| TGTCCGTTGTACCTATTGAC+TGG | + | chr3.1:76409016-76409035 | None:intergenic | 45.0% | |
| TGTTGATGCTATACACAGCC+AGG | - | chr3.1:76409460-76409479 | MS.gene054940:CDS | 45.0% | |
| TTCCCTGTATGCTAGATGCA+TGG | + | chr3.1:76410783-76410802 | None:intergenic | 45.0% | |
| TTCTGCTACCTATGAGAGCA+GGG | - | chr3.1:76408182-76408201 | MS.gene054940:intron | 45.0% | |
| TTTACTTGGAGGAATGGCTG+GGG | + | chr3.1:76409846-76409865 | None:intergenic | 45.0% | |
| TTTGCAGCCTGGTCAAAACA+CGG | - | chr3.1:76409979-76409998 | MS.gene054940:CDS | 45.0% | |
| ! | AATACTGGTGCCAACATGCA+TGG | - | chr3.1:76408987-76409006 | MS.gene054940:CDS | 45.0% |
| ! | AATTCTTTTCAGCAGGGTGG+TGG | - | chr3.1:76408483-76408502 | MS.gene054940:intron | 45.0% |
| ! | CATCATCAGGTCCAGCATTT+TGG | + | chr3.1:76410102-76410121 | None:intergenic | 45.0% |
| ! | GTCCGTTGTACCTATTGACT+GGG | + | chr3.1:76409015-76409034 | None:intergenic | 45.0% |
| ! | GTTTTACTTGGAGGAATGGC+TGG | + | chr3.1:76409848-76409867 | None:intergenic | 45.0% |
| !! | ACTCTTGACATGTTCTGAGG+AGG | + | chr3.1:76409945-76409964 | None:intergenic | 45.0% |
| !! | AGGAGCTTCTGAAACCAACT+TGG | - | chr3.1:76410185-76410204 | MS.gene054940:CDS | 45.0% |
| !! | TAAAGTAACGGGTACCATCC+AGG | - | chr3.1:76410264-76410283 | MS.gene054940:CDS | 45.0% |
| !! | TGCAAGGAGCATCAATAGTG+CGG | + | chr3.1:76408524-76408543 | None:intergenic | 45.0% |
| !! | TTGCCTATAACGGATGGATG+GGG | - | chr3.1:76408882-76408901 | MS.gene054940:CDS | 45.0% |
| !!! | TGTTTTGACCAGGCTGCAAA+TGG | + | chr3.1:76409979-76409998 | None:intergenic | 45.0% |
| AAGAATAGTCCCTGCTCTCG+TGG | + | chr3.1:76408374-76408393 | None:intergenic | 50.0% | |
| AGAATGGTCCCTGCTCTCAT+AGG | + | chr3.1:76408013-76408032 | None:intergenic | 50.0% | |
| AGAATGGTCCCTGCTCTCAT+GGG | + | chr3.1:76408013-76408032 | None:intergenic | 50.0% | |
| AGGGACCATTCTCCAAAGAG+TGG | - | chr3.1:76408201-76408220 | MS.gene054940:intron | 50.0% | |
| AGGTACAACGGACATTTGGC+CGG | - | chr3.1:76409022-76409041 | MS.gene054940:CDS | 50.0% | |
| ATCCTACTAACCACGAGAGC+AGG | - | chr3.1:76408361-76408380 | MS.gene054940:intron | 50.0% | |
| ATCCTACTACCCATGAGAGC+AGG | - | chr3.1:76408271-76408290 | MS.gene054940:intron | 50.0% | |
| CTCACGATACGCAAGCATGT+AGG | - | chr3.1:76408592-76408611 | MS.gene054940:intron | 50.0% | |
| GAACATGATGTAAGCCAGGG+TGG | - | chr3.1:76409119-76409138 | MS.gene054940:CDS | 50.0% | |
| GAGAATAGTCCCTGCTCTCA+TGG | + | chr3.1:76408284-76408303 | None:intergenic | 50.0% | |
| GGAGACATTTCTGCATCACC+CGG | + | chr3.1:76409044-76409063 | None:intergenic | 50.0% | |
| GTGGGGTTCAGATAGTGACA+TGG | - | chr3.1:76408737-76408756 | MS.gene054940:intron | 50.0% | |
| TACAAGGGCTGCACAGTTAC+AGG | + | chr3.1:76409212-76409231 | None:intergenic | 50.0% | |
| TCCAAGGATATGAGCCAGAG+AGG | + | chr3.1:76409621-76409640 | None:intergenic | 50.0% | |
| TCCTACTAACCACGAGAGCA+GGG | - | chr3.1:76408362-76408381 | MS.gene054940:intron | 50.0% | |
| TCCTACTACCCATGAGAGCA+GGG | - | chr3.1:76408272-76408291 | MS.gene054940:intron | 50.0% | |
| TGACTGGGAACCATGCATGT+TGG | + | chr3.1:76409000-76409019 | None:intergenic | 50.0% | |
| TGGCTAGATATGTACCACCC+TGG | + | chr3.1:76409136-76409155 | None:intergenic | 50.0% | |
| TTACTTGGAGGAATGGCTGG+GGG | + | chr3.1:76409845-76409864 | None:intergenic | 50.0% | |
| ! | GGAGCATCAATAGTGCGGTT+AGG | + | chr3.1:76408519-76408538 | None:intergenic | 50.0% |
| ! | TGGCAGCTGGAAGTATGCAA+AGG | + | chr3.1:76409386-76409405 | None:intergenic | 50.0% |
| !! | TGCCTATAACGGATGGATGG+GGG | - | chr3.1:76408883-76408902 | MS.gene054940:CDS | 50.0% |
| !!! | TGTTTTGGGAGTTCAACGGC+AGG | + | chr3.1:76409767-76409786 | None:intergenic | 50.0% |
| !!! | TTGACCACCGTGTTTTGACC+AGG | + | chr3.1:76409989-76410008 | None:intergenic | 50.0% |
| ACTTCCAGCTGCCATGCAGT+TGG | - | chr3.1:76409392-76409411 | MS.gene054940:CDS | 55.0% | |
| ATCCTGCTACCCATGAGAGC+AGG | - | chr3.1:76408001-76408020 | MS.gene054940:intron | 55.0% | |
| CACGAATCTCTCAGCCTCTC+TGG | - | chr3.1:76409604-76409623 | MS.gene054940:CDS | 55.0% | |
| CTGGCTCATATCCTTGGAGC+AGG | - | chr3.1:76409623-76409642 | MS.gene054940:CDS | 55.0% | |
| CTGTCGCAGTTGTCTAACCC+AGG | - | chr3.1:76409887-76409906 | MS.gene054940:intron | 55.0% | |
| GAGAATGGTCCCTGCTCTCA+TGG | + | chr3.1:76408014-76408033 | None:intergenic | 55.0% | |
| GATGGGGTCTTCCAGCCATA+TGG | - | chr3.1:76409079-76409098 | MS.gene054940:CDS | 55.0% | |
| GGACTGTCCTCGACTCTATC+AGG | + | chr3.1:76408768-76408787 | None:intergenic | 55.0% | |
| GGCTGATCCTGATAGAGTCG+AGG | - | chr3.1:76408758-76408777 | MS.gene054940:CDS | 55.0% | |
| GGTACAACGGACATTTGGCC+GGG | - | chr3.1:76409023-76409042 | MS.gene054940:CDS | 55.0% | |
| TAGTGCGGTTAGGCACATGC+CGG | + | chr3.1:76408509-76408528 | None:intergenic | 55.0% | |
| TCCCTGCTCTCATGGGTAGT+AGG | + | chr3.1:76408276-76408295 | None:intergenic | 55.0% | |
| TCCCTGCTCTCGTGGTTAGT+AGG | + | chr3.1:76408366-76408385 | None:intergenic | 55.0% | |
| TCCTGCTACCCATGAGAGCA+GGG | - | chr3.1:76408002-76408021 | MS.gene054940:intron | 55.0% | |
| TGCCCCCATCCATCCGTTAT+AGG | + | chr3.1:76408888-76408907 | None:intergenic | 55.0% | |
| TTGTCCAACTGCATGGCAGC+TGG | + | chr3.1:76409399-76409418 | None:intergenic | 55.0% | |
| ! | CGGAATATTGGCCTCCTGGA+TGG | + | chr3.1:76410281-76410300 | None:intergenic | 55.0% |
| ! | GCCTCTCTGGCTCATATCCT+TGG | - | chr3.1:76409617-76409636 | MS.gene054940:CDS | 55.0% |
| ! | TCTGCGGAATATTGGCCTCC+TGG | + | chr3.1:76410285-76410304 | None:intergenic | 55.0% |
| !! | AGTAACGGGTACCATCCAGG+AGG | - | chr3.1:76410267-76410286 | MS.gene054940:CDS | 55.0% |
| !! | ATAACGGATGGATGGGGGCA+TGG | - | chr3.1:76408888-76408907 | MS.gene054940:CDS | 55.0% |
| GCAGCCTGGTCAAAACACGG+TGG | - | chr3.1:76409982-76410001 | MS.gene054940:CDS | 60.0% | |
| GGGAGTTCAACGGCAGGATC+TGG | + | chr3.1:76409761-76409780 | None:intergenic | 60.0% | |
| TCCCTGCTCTCATGGGTAGC+AGG | + | chr3.1:76408006-76408025 | None:intergenic | 60.0% | |
| !! | CTTTTCAGCAGGGTGGTGGC+CGG | - | chr3.1:76408487-76408506 | MS.gene054940:intron | 60.0% |
| GCAGCTGCTGACCTGCTCCA+AGG | + | chr3.1:76409637-76409656 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 76407898 | 76411215 | 76407898 | ID=MS.gene054940 |
| chr3.1 | mRNA | 76407898 | 76411215 | 76407898 | ID=MS.gene054940.t1;Parent=MS.gene054940 |
| chr3.1 | exon | 76409925 | 76411215 | 76409925 | ID=MS.gene054940.t1.exon1;Parent=MS.gene054940.t1 |
| chr3.1 | CDS | 76409925 | 76411215 | 76409925 | ID=cds.MS.gene054940.t1;Parent=MS.gene054940.t1 |
| chr3.1 | exon | 76408747 | 76409765 | 76408747 | ID=MS.gene054940.t1.exon2;Parent=MS.gene054940.t1 |
| chr3.1 | CDS | 76408747 | 76409765 | 76408747 | ID=cds.MS.gene054940.t1;Parent=MS.gene054940.t1 |
| chr3.1 | exon | 76407898 | 76407927 | 76407898 | ID=MS.gene054940.t1.exon3;Parent=MS.gene054940.t1 |
| chr3.1 | CDS | 76407898 | 76407927 | 76407898 | ID=cds.MS.gene054940.t1;Parent=MS.gene054940.t1 |
| Gene Sequence |
| Protein sequence |
