AlfalfaGEDB | MS.gene75681

M. sativa cultivar XinJiangDaYe / MS.gene75681

KEGG: K08150
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF00083.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75681.t1	XP_003601664.2	98.2	490	9	0	13	502	7	496	5.60E-266	926.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75681.t1	Q8VZR6	70.1	502	140	3	10	501	7	508	4.3e-198	692.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75681.t1	G7JAP8	98.2	490	9	0	13	502	7	496	4.1e-266	926.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050553	MS.gene75681	0.843399	1.44E-58	-1.69E-46
MS.gene05080	MS.gene75681	0.807502	4.90E-50	-1.69E-46
MS.gene050868	MS.gene75681	0.838436	2.88E-57	-1.69E-46
MS.gene050871	MS.gene75681	0.840905	6.56E-58	-1.69E-46
MS.gene051268	MS.gene75681	0.816073	6.67E-52	-1.69E-46
MS.gene051734	MS.gene75681	0.824064	9.88E-54	-1.69E-46
MS.gene052966	MS.gene75681	0.851787	7.07E-61	-1.69E-46
MS.gene053824	MS.gene75681	0.803963	2.71E-49	-1.69E-46
MS.gene05494	MS.gene75681	0.83484	2.38E-56	-1.69E-46
MS.gene05589	MS.gene75681	0.811345	7.33E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75681.t1	MTR_3g084110	98.163	490	9	0	13	502	7	496	0.0	971
MS.gene75681.t1	MTR_7g005910	74.233	489	125	1	13	501	12	499	0.0	741
MS.gene75681.t1	MTR_1g116660	69.076	498	149	1	4	496	5	502	0.0	698
MS.gene75681.t1	MTR_1g116650	69.106	492	133	2	13	501	57	532	0.0	682
MS.gene75681.t1	MTR_5g077580	45.276	561	205	5	29	499	21	569	3.25e-165	479
MS.gene75681.t1	MTR_2g049020	56.250	352	143	2	22	362	6	357	6.25e-134	400
MS.gene75681.t1	MTR_2g049020	49.612	129	62	1	366	494	441	566	4.47e-35	138
MS.gene75681.t1	MTR_2g048720	58.084	334	140	0	29	362	21	354	1.88e-128	385
MS.gene75681.t1	MTR_2g048720	53.636	110	51	0	375	484	444	553	2.83e-26	112
MS.gene75681.t1	MTR_2g026160	56.932	339	140	1	30	362	23	361	3.35e-122	370

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene75681.t1	AT2G43330	70.120	502	140	3	10	501	7	508	0.0	691
MS.gene75681.t1	AT1G30220	57.185	341	143	1	29	366	23	363	2.40e-127	383
MS.gene75681.t1	AT1G30220	49.612	129	63	1	375	501	450	578	3.51e-37	144
MS.gene75681.t1	AT2G35740	53.846	338	150	2	32	363	24	361	3.49e-119	362
MS.gene75681.t1	AT2G35740	50.926	108	53	0	370	477	448	555	1.16e-29	122
MS.gene75681.t1	AT4G16480	54.412	340	149	1	29	362	22	361	2.96e-115	352
MS.gene75681.t1	AT4G16480	44.361	133	64	1	370	492	449	581	1.06e-30	125
MS.gene75681.t1	AT4G16480	54.412	340	149	1	29	362	22	361	2.96e-115	352
MS.gene75681.t1	AT4G16480	44.361	133	64	1	370	492	449	581	1.06e-30	125
MS.gene75681.t1	AT4G16480	54.412	340	149	1	29	362	22	361	2.96e-115	352

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Find 131 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCACCTTGGAGACTC+AGG	0.507127	3.3:+70554872	None:intergenic
AACGAACCCCTTATTTCTGA+TGG	0.515934	3.3:+70556532	None:intergenic
AACGCTGCTGGAACAATTCT+TGG	0.326350	3.3:-70554009	MS.gene75681:CDS
AACTATTGTAAGCATGGCAT+TGG	0.474373	3.3:-70556770	MS.gene75681:CDS
AAGAGTTCCGAGGTGTATGT+GGG	0.553039	3.3:-70553759	MS.gene75681:CDS
AATAATTGCTAACCACCCAT+AGG	0.652891	3.3:+70553861	None:intergenic
AATCATCTTTAATATATAAA+AGG	0.195436	3.3:+70557234	None:intergenic
AATCCTCACCATCAGAAATA+AGG	0.280399	3.3:-70556540	MS.gene75681:CDS
AATGTCAATCCTTTCGTCTC+TGG	0.364858	3.3:+70553589	None:intergenic
AATGTGCTTATGATAACTGG+TGG	0.683650	3.3:-70556499	MS.gene75681:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGACCAAAAGTGGTATT+TGG	+	chr3.3:70553608-70553627	None:intergenic	30.0%
AAATCATGGAAAGAAATGTC+AGG	-	chr3.3:70556775-70556794	MS.gene75681:CDS	30.0%
AATAAATGGGTGTTTCAGAT+TGG	+	chr3.3:70557896-70557915	None:intergenic	30.0%
AATGCTTTCCTTATGCTAAA+AGG	-	chr3.3:70557595-70557614	MS.gene75681:intron	30.0%
ACAAATGTGCTTATGATAAC+TGG	-	chr3.3:70555869-70555888	MS.gene75681:intron	30.0%
ACGAAAGAACATTAGATACA+TGG	-	chr3.3:70557754-70557773	MS.gene75681:intron	30.0%
AGAATTGATTATGACGTGTT+TGG	-	chr3.3:70554324-70554343	MS.gene75681:intron	30.0%
AGAGAGAAGAAGAAGATAAA+AGG	-	chr3.3:70554550-70554569	MS.gene75681:intron	30.0%
AGTTAATTAGAAAACTGGCA+GGG	-	chr3.3:70558015-70558034	MS.gene75681:intron	30.0%
ATAGCTTATTAGTTACTGAC+TGG	+	chr3.3:70556961-70556980	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	70553501	70558892	70553501	ID=MS.gene75681
chr3.3	mRNA	70553501	70558892	70553501	ID=MS.gene75681.t1;Parent=MS.gene75681
chr3.3	exon	70558856	70558892	70558856	ID=MS.gene75681.t1.exon1;Parent=MS.gene75681.t1
chr3.3	CDS	70558856	70558892	70558856	ID=cds.MS.gene75681.t1;Parent=MS.gene75681.t1
chr3.3	exon	70557620	70557739	70557620	ID=MS.gene75681.t1.exon2;Parent=MS.gene75681.t1
chr3.3	CDS	70557620	70557739	70557620	ID=cds.MS.gene75681.t1;Parent=MS.gene75681.t1
chr3.3	exon	70557202	70557272	70557202	ID=MS.gene75681.t1.exon3;Parent=MS.gene75681.t1
chr3.3	CDS	70557202	70557272	70557202	ID=cds.MS.gene75681.t1;Parent=MS.gene75681.t1
chr3.3	exon	70556459	70556794	70556459	ID=MS.gene75681.t1.exon4;Parent=MS.gene75681.t1
chr3.3	CDS	70556459	70556794	70556459	ID=cds.MS.gene75681.t1;Parent=MS.gene75681.t1
chr3.3	exon	70554865	70554972	70554865	ID=MS.gene75681.t1.exon5;Parent=MS.gene75681.t1
chr3.3	CDS	70554865	70554972	70554865	ID=cds.MS.gene75681.t1;Parent=MS.gene75681.t1
chr3.3	exon	70554561	70554746	70554561	ID=MS.gene75681.t1.exon6;Parent=MS.gene75681.t1
chr3.3	CDS	70554561	70554746	70554561	ID=cds.MS.gene75681.t1;Parent=MS.gene75681.t1
chr3.3	exon	70553501	70554151	70553501	ID=MS.gene75681.t1.exon7;Parent=MS.gene75681.t1
chr3.3	CDS	70553501	70554151	70553501	ID=cds.MS.gene75681.t1;Parent=MS.gene75681.t1

Gene Sequence

>MS.gene75681

ATGACCAAGAGTAGCTCCATGTTTACTGACGCATATGGTTAGAAAATGAACTTTAATGTTCACTAAAAAAAAAGAACTTTAGTGAGTCTACTGTATTCTTTTGGCCAAATACCACTTTTGGTCTTTTTAGTTTGATAGAATTCCCAGGTTACTCCTTTAAGTTTCGAAAGTTTCAATTAAGTCCTTTTAGTTTGACAAAATTACTAAGTTAGTCTTTAAGTTTCGAAAATTTCAGATAGGTCCTTTTAGTTTGACAGAATTCCCAAGTTAGTCCTTTAGAATTCCCAAGTTAGCCTATTCTTTTACAACAATGTTGGTCATGAGCATATTATTCTTCTAAAGTTGTAGATAAATTAATAAAGATTAAATAGTTAAATTTGTTTCAGAAAAAAAAAATCAATTAAAAAGAATTAGTTTACTTAAAATCAATCTTGATGATCGTAATATCAAACACTTTTTTTAAAAGAACAAAATCAAACACATGCAATCTCATAAAAAAGTCTGAAAATTGACGATGAAAAAAATATTGATGAAATATACAAAGGAAGAATTAAGTGTATCTTTGGTTTCACTTTTAGAGGGTCAGAATTAATTCTGAAGATGTAGAAGGGATTGTGACATGCTTTGATTTTTTTAGATAAAATTAATTCAGTTTTTAGAATTGATTATATTTGAAACTATAATCTGTAGCCGATTCTAGAATTGGTTTTTAACACACAAAATTTATGATTCAACTATTCAAATATAAATCAGTATACCATCCACTCACTTAGTGTACGCTTGGTTCAACTTCTAAAGTGATCATAATTTTTTTTGGATGTGTAGAATTGATTATGACGTGTTTGGTTGTTGTCGAGTAGAAATGATTCTACCCTCAAAATTGATTCTATTCAAAGCTAAAATTTATAGTTTTTGATCATAGATTTGACATTTTAATCTGGACGGGACAAAAACAAAGTCATTTTCATTTCCATTCTGACGGAACAAGTGTCTCCACCGAATTTGTGCCATTCAATCACCCACTCCAACGCGAAGAGAGAGAGAGAGAGAGAGAGAAGAAGAAGATAAAAGGAATCAGTTCATCATCATTCTCCACTTTTCATTTGCATTCAGAGGTAGAAGAAGAAGAAGAAGATGCCGTACGCGACGCCAGGAAGCTCCGATTACTTGGAATTGTATCCAGAAAGAAAGATATCGTTTTTCAAGAATCCCTACATTCTCGGAGTCACTGCTGCTGCTGGCATTGGTGGTCTCCTCTTCGGTTACGATACTGGTAGGTAGCTACACTACTTTTTCTTCTCCTCAATTATATATGAACAACAATCACAACTGCGACTGCACTAATCTTGATTATCCATAATTTTATGTAGTAATTGTGCTACCATAAATCACATTCATCTGTACCTTACTAGTTTCTACCATATCAAACATTGCACCTTAACAGACCAGTAACTGCAAATAGTTTCAACTTCAAATTTAACAAATAAATAGATATGTACCAATTTTCAATTTAATTTTAATTTATGATAGTTTATTAAAATTACACATTTTGTGAGCAGCTAGAGTCTGAATGATGAAAGAAATTAGCTTCTCAGTTTTACTGTTATTTGCTCCGTGCAGGTGTTATATCAGGGGCCCTTTTATATATTAAAGATGATTTTGATGATGTTCGGAAAAGTAGCTTCCTTCAGGTACAAGCTTTTCCGCATTATTCAATGTTGTTGGCTTCAGAATGATGCACCCATAATTTTAACTGTTGAATTGGAATTTTTTTATGATGTCCAAGAATTCAGCTGTTAAAACTTGAGTGCATCGGTGGATCACTTTAATTTTTTACAAGTAGTATGCGGTATTTGTCACCAAGATTCAGATGTTTATTGCCTTTTCTGTTTTCCTGGTTCTTCTGTCCTTTTCATTTTTTGTAATACTAATGTGGGGGTTGGGGTGTAGGTGTTGGATTTTATCTCTATTAAGAGTGAGAAACATAACTATCTAACTGGATAAGCGAAACTTGCTGCTTGTAAATCTCATTTCGAATAGTATGTTCAATTATTGCCTACTTTGGATTCTAGATTGTTTTACATCCTTACGTTTGCAGGAAACTATTGTAAGCATGGCATTGGTTGGTGCAATTATTGGAGCAGCAACAGGTGGCTGGATTAATGATGCTTTTGGACGTAAGAAGGCCACACTTAGTGCTGATGTTGTCTTTACTCTTGGATCAGTTGTTATGGCTGCCGCACCAGATGCATATGTTCTCATACTTGGCCGTCTTCTAGTTGGCATTGGTGTGGGCGTAGCTTCTGTCACTGCTCCTGTATATATTGCAGAATCCTCACCATCAGAAATAAGGGGTTCGTTAGTTAGCACAAATGTGCTTATGATAACTGGTGGACAGTTTCTTTCTTACCTCGTAAATCTTGCCTTTACCGAGGTTAGGCCTATCTTTCTTTGCTTCCTTTAAATCTCCTCGTAAATATGCTTCTGATACTTGGTAGTCAACTTGAGTGGATAAAATTTTCTGTGGAAGAGACCTAGTTTAATAGTATGTAGGAATGTATCTGGATTATGTTTCTTTTGATCACCATTTAGAAGTTTAAAGAGGTAAAGATCTCTATTTCGACTTTCCAATAGGTCAGAAAAGGCATAAGAGATATAAAAAGCATATATAATGGAGCATAAATCACATATTTTGAGGTTATCTCTTATGATTGTTGCTGTGTGAGGCTTAAAGTGATAGCATATATTGTTAGGAGGTTTAAAAATGTCATAAGTGATAAACTTTTGGATTACTATTCCTGTTGAAACAGAATGCTAGATTTTTTTTCTGTCTTCAAATAAATGTTTATTTCATACTCTTTCCCAAAAATTGCTTATTTCATATTTGCTGGCACATAAGAATTCCGTTTTTGCAGCTTGAAGGGGCAACATTCCCATCAAGATATATATTGGGGCAGCATCACTGAAGGAATTCTTCTGTTCTTTACTGCCTAATTTAGTGATTTATGGTTATTTGATTTTTATAATTGCATGCTTCTCTCTGTCTCTCTTACATATAAAAGGAAAGTTGAGTAATACCAGTGCAGTCCCCTCTCTAGTCTAAAGCTTCTATTCACGGTTTTCATTAACACAGCATGTACTAGATGAGCGTGAGATAACCCAAACCATCCTTTGCGAATCTGATTTACCACCATTTCCTGTAGTTTTCTCTGCAATTGAATATTAAAAGAGTTTCCCTTTACATTTCTTTGTCTTCTTTTAGTGTAGAAAAAGAAAATCATGGAAAGAAATGTCAGGAGCTTTGTGAATTCTTTTTTTTCTTCTTCTTAATGAACTTGTTTAATGGATGTTAGACCATGGTGTTATCTCTTCTACTGTCAATTGTCAGTTTGTCACCCAAATGAGCTTAAATTGCATAACTGCTGAAACAGTTTGTAAGTTAACTCTTGTGATGCCACCAGTCAGTAACTAATAAGCTATAAGTGGCATGTTGTTTGTGGGAAATCGTACACGTAATGTTTTACAGACAATTATTAAAATCTAAATTTGATACTTTAATCTGGTTGGGAATCTAGGAAACACCAACCTCTACTTTAGAGAGTAGAAAAGAATTTTCTTTAAGAATTTATACTATTTCTCAGTAATGTGCCACCATATAGTTTAAGTCATTAAAGGACTACACATCATTGAGTGATAATGTAAGACATTTTTGAATCACCATGTCCTCAAATTGGGTAAACTTTTTATATATCTAAAGAATTGCGAGGGCTTTAATATTATTCGCGTAACCATTATCATAGTGAAAGGCTAAATCGTTTTTATTTGTTGAAGTTTTATTTGGCTCAATTGTATTGCTGTTACCTGTTAGGATTTTTCTTTAATTATTTGAGAAATCACCTAATGAAATTTTAATAAAGCAGGTTCCTGGGACATGGAGATGGATGCTGGGAGTTGCTGGTTTGCCAGCTGTTATTCAGTTTTGTGTCATGCTTTTCCTGCCTGAGTCTCCAAGGTGGCTTTTCCTGAAGGTGATAAATTTTTTTTTTTTTTTTTTTTTATGCATTACGTTTGGGCTATTGATTCCTCATTCCTTGAATGCTTTCCTTATGCTAAAAGGTGTCTTACACTGGTATCTCTTATGTACAGAATAGGAAAGATGAAGCTATTTCGGTGCTTTCCAATATCTATAACTATGAACGCCTAGAAGATGAAGTCAATTACCTCACAGCTGTTTCTGAGCAAGAAATGCAGAAACGAAAGAACATTAGATACATGGATGTTTTCCGATCAACGGAAATCAGAACTGCTTTTTTTGTTGGGGCCGGACTTCAGGTTATTGAGACAAGTTTAAATTTTCTGTTTCTAAATTCCACTTTCTCATGACTTGCTGGGCCAATCTGAAACACCCATTTATTTAATGGATTAATAGGTCTACTTTAATAAACTGTTATTTGTGATTTTAGGGCTATACTTTTTGGTTCTACTTAAAGAAACAAAAACAAAAACTTAACTGTAGTTAATTAGAAAACTGGCAGGGAAACAATAATGAACTTCCATTTCTTATTTCAATGGGCATGATTATGACTCTAAAGAATTCTTTTTCAAATGGAAAAGTTACAGTCAGCTGCAAGCAGCTTTCTATGATCTCAACACTCAAATGATATATCTGTAGATATTGAATGCATGTGACTACTTGCATCTTATGCTGTGTAACTTCTCCCATATTTTCATTATTATGCAGGCTTTTCAGCAGTTCACTGGTATCAGCATAGTCATGTACTACAGCCCCACAATCATTCAAATGGCTGGGTTTAATTCCAATCAGTTAGCTCTTCTTCTATCTCTCATCGTTGCTGGCATGAACGCTGCTGGAACAATTCTTGGCATTTATCTAATTGACCATGCAGGGCGAAGGAAGTTGGCCCTCTCAAGCTTGTCAGGTGCAACTGTAGCGCTGGCAATCCTTTCTGCAGGGTCTTACCTTCAATCATCTGACTCCACAAATACAACCTATGGGTGGTTAGCAATTATTGGGTTAGCCCTTTATATTATTTTTTTCGCTCCAGGAATGGGACCGGTGCCATGGACTGTGAACTCGGAAATCTATCCTGAAGAGTTCCGAGGTGTATGTGGGGGCATGTCAGCTACTGTAAACTGGATTTGCAGCGTGATAATGTCTGAGAGCTTTCTTTCAATTTCTGATTCCGTTGGCCTTGGTGGTAGTTTCGTGATTCTTGGTGTTATATGTGTGGTTGCTTTTTTCTTTGTGCTCTTGTTTGTGCCAGAGACGAAAGGATTGACATTTGAAGAAGTGGCCCTCATATGGAAGAAGAGATCCCAGGGTAAAGATTATGACTCACAGAACCTTCTTGAGAGAGGAAGCCAGTTCTAA

Protein sequence

>MS.gene75681.t1

MTKSSSMFTDAYGSSDYLELYPERKISFFKNPYILGVTAAAGIGGLLFGYDTGVISGALLYIKDDFDDVRKSSFLQETIVSMALVGAIIGAATGGWINDAFGRKKATLSADVVFTLGSVVMAAAPDAYVLILGRLLVGIGVGVASVTAPVYIAESSPSEIRGSLVSTNVLMITGGQFLSYLVNLAFTEVPGTWRWMLGVAGLPAVIQFCVMLFLPESPRWLFLKNRKDEAISVLSNIYNYERLEDEVNYLTAVSEQEMQKRKNIRYMDVFRSTEIRTAFFVGAGLQAFQQFTGISIVMYYSPTIIQMAGFNSNQLALLLSLIVAGMNAAGTILGIYLIDHAGRRKLALSSLSGATVALAILSAGSYLQSSDSTNTTYGWLAIIGLALYIIFFAPGMGPVPWTVNSEIYPEEFRGVCGGMSATVNWICSVIMSESFLSISDSVGLGGSFVILGVICVVAFFFVLLFVPETKGLTFEEVALIWKKRSQGKDYDSQNLLERGSQF