Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76108.t1 | XP_003616715.1 | 98.1 | 263 | 5 | 0 | 1 | 263 | 234 | 496 | 2.30E-149 | 538.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76108.t1 | G7K793 | 98.1 | 263 | 5 | 0 | 1 | 263 | 234 | 496 | 1.6e-149 | 538.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene76108 | 0.820365 | 7.13E-53 | -1.69E-46 |
| MS.gene052534 | MS.gene76108 | 0.805433 | 1.34E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene76108 | 0.810599 | 1.06E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene76108 | 0.815146 | 1.07E-51 | -1.69E-46 |
| MS.gene055841 | MS.gene76108 | 0.82992 | 3.93E-55 | -1.69E-46 |
| MS.gene05686 | MS.gene76108 | 0.806814 | 6.85E-50 | -1.69E-46 |
| MS.gene056973 | MS.gene76108 | 0.803962 | 2.71E-49 | -1.69E-46 |
| MS.gene057034 | MS.gene76108 | 0.802386 | 5.75E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene76108 | 0.861405 | 1.05E-63 | -1.69E-46 |
| MS.gene057371 | MS.gene76108 | 0.819162 | 1.34E-52 | -1.69E-46 |
| MS.gene058279 | MS.gene76108 | 0.802452 | 5.57E-49 | -1.69E-46 |
| MS.gene05952 | MS.gene76108 | 0.801066 | 1.07E-48 | -1.69E-46 |
| MS.gene05985 | MS.gene76108 | -0.818241 | 2.17E-52 | -1.69E-46 |
| MS.gene060244 | MS.gene76108 | 0.813056 | 3.11E-51 | -1.69E-46 |
| MS.gene060365 | MS.gene76108 | 0.803667 | 3.12E-49 | -1.69E-46 |
| MS.gene060937 | MS.gene76108 | 0.805022 | 1.63E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76108.t1 | MTR_5g083500 | 98.099 | 263 | 5 | 0 | 1 | 263 | 234 | 496 | 0.0 | 546 |
| MS.gene76108.t1 | MTR_3g071950 | 75.573 | 262 | 62 | 2 | 1 | 262 | 235 | 494 | 3.31e-146 | 419 |
| MS.gene76108.t1 | MTR_1g107165 | 32.558 | 258 | 159 | 5 | 10 | 262 | 271 | 518 | 1.78e-38 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76108.t1 | AT2G40390 | 61.217 | 263 | 102 | 0 | 1 | 263 | 234 | 496 | 2.77e-119 | 350 |
| MS.gene76108.t1 | AT5G64190 | 62.357 | 263 | 97 | 2 | 1 | 262 | 241 | 502 | 1.27e-114 | 338 |
| MS.gene76108.t1 | AT5G64190 | 62.357 | 263 | 97 | 2 | 1 | 262 | 240 | 501 | 1.56e-114 | 338 |
| MS.gene76108.t1 | AT2G15020 | 30.233 | 258 | 154 | 4 | 15 | 262 | 281 | 522 | 6.64e-33 | 125 |
Find 60 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATGCCTATTTCCATTAT+TGG | 0.166320 | 5.2:-71488526 | None:intergenic |
| AACTAGGAGGTTGGAGTTTA+GGG | 0.189509 | 5.2:+71488963 | MS.gene76108:CDS |
| AAATTTGAAGAATCGGTTTA+TGG | 0.202767 | 5.2:+71488643 | MS.gene76108:CDS |
| AGATTATGGAATGGGAAATT+AGG | 0.215093 | 5.2:+71488887 | MS.gene76108:CDS |
| GTTATAGTGCAAATTTAAAT+TGG | 0.227636 | 5.2:+71488665 | MS.gene76108:CDS |
| AAACTAGGAGGTTGGAGTTT+AGG | 0.246270 | 5.2:+71488962 | MS.gene76108:CDS |
| GGGAAATTAGGGGTTGGATA+TGG | 0.296559 | 5.2:+71488899 | MS.gene76108:CDS |
| ACCCCACCTTGTCTAGTAAA+AGG | 0.303601 | 5.2:-71488799 | None:intergenic |
| GAAAATCCAATAATGGAAAT+AGG | 0.304600 | 5.2:+71488520 | MS.gene76108:CDS |
| CTAAGTCTTGGTTTAGAGAT+AGG | 0.319369 | 5.2:+71488758 | MS.gene76108:CDS |
| GATTATGGAATGGGAAATTA+GGG | 0.322963 | 5.2:+71488888 | MS.gene76108:CDS |
| CAGCTCCTCTTTCATTCATA+AGG | 0.338915 | 5.2:-71488402 | None:intergenic |
| TTGGTTTCTTCATGATAGTA+TGG | 0.340285 | 5.2:+71488684 | MS.gene76108:CDS |
| TAGAATGTCCTATACTTATT+AGG | 0.345792 | 5.2:-71488934 | None:intergenic |
| AGGTGCTAGAGGGAAGATTA+TGG | 0.357263 | 5.2:+71488873 | MS.gene76108:CDS |
| ATCCTCAGAAAATCCAATAA+TGG | 0.359644 | 5.2:+71488513 | MS.gene76108:CDS |
| TTTCTTTGATAAAGGCTTTG+TGG | 0.363369 | 5.2:-71487584 | None:intergenic |
| CTTATTTGCCTAATAAGTAT+AGG | 0.370748 | 5.2:+71488926 | MS.gene76108:CDS |
| CTCAAATATCAACAACTTGA+AGG | 0.385045 | 5.2:+71487546 | MS.gene76108:CDS |
| GCCTTGGAAATTTGAAGAAT+CGG | 0.401479 | 5.2:+71488636 | MS.gene76108:CDS |
| ACTCCAACCTCCTAGTTTCA+TGG | 0.411113 | 5.2:-71488957 | None:intergenic |
| CAACAATGAGTTTAAAGCCT+TGG | 0.411370 | 5.2:+71488620 | MS.gene76108:CDS |
| AGCCCTATGTAGGGATTTGT+TGG | 0.418015 | 5.2:-71488574 | None:intergenic |
| AGCTCCTCTTTCATTCATAA+GGG | 0.447164 | 5.2:-71488401 | None:intergenic |
| TGGTGAACATTGACAACATA+AGG | 0.454093 | 5.2:+71487622 | MS.gene76108:CDS |
| CTATCTCTAAACCAAGACTT+AGG | 0.456609 | 5.2:-71488757 | None:intergenic |
| AATTAATTAACCCTAAGTCT+TGG | 0.472762 | 5.2:+71488746 | MS.gene76108:CDS |
| TAGAGGGAAGATTATGGAAT+GGG | 0.487526 | 5.2:+71488879 | MS.gene76108:CDS |
| AGAAAAGTGGGTCGAAATCA+TGG | 0.489209 | 5.2:+71487602 | MS.gene76108:CDS |
| AAGCCTTTATCAAAGAAAAG+TGG | 0.498184 | 5.2:+71487589 | MS.gene76108:CDS |
| CAACCAACAAATCCCTACAT+AGG | 0.511769 | 5.2:+71488571 | MS.gene76108:CDS |
| ACCGATTCTTCAAATTTCCA+AGG | 0.517511 | 5.2:-71488637 | None:intergenic |
| TTTCTTCATGATAGTATGGA+TGG | 0.518404 | 5.2:+71488688 | MS.gene76108:CDS |
| AGGCTTTAAACTCATTGTTG+TGG | 0.521841 | 5.2:-71488617 | None:intergenic |
| GTGTGTTGGAAAGTTGATAA+AGG | 0.526294 | 5.2:+71488853 | MS.gene76108:CDS |
| ATAGGGCTCAACGTATCAGC+TGG | 0.526734 | 5.2:+71488589 | MS.gene76108:CDS |
| TCCAATAATGGAAATAGGCA+TGG | 0.529685 | 5.2:+71488525 | MS.gene76108:CDS |
| TGATACGTTGAGCCCTATGT+AGG | 0.533661 | 5.2:-71488584 | None:intergenic |
| GACACCCTTATGAATGAAAG+AGG | 0.534438 | 5.2:+71488397 | MS.gene76108:CDS |
| TATCTCTAAACCAAGACTTA+GGG | 0.543035 | 5.2:-71488756 | None:intergenic |
| AAGACTTGATGTTGGAGTGT+TGG | 0.551465 | 5.2:-71488472 | None:intergenic |
| CTTATGAATGAAAGAGGAGC+TGG | 0.553722 | 5.2:+71488403 | MS.gene76108:CDS |
| CTACCATGAAACTAGGAGGT+TGG | 0.561866 | 5.2:+71488954 | MS.gene76108:CDS |
| AGTTGCAATGATACTCTTGA+TGG | 0.562102 | 5.2:-71488445 | None:intergenic |
| ATACACTTAAGACTTGATGT+TGG | 0.563809 | 5.2:-71488480 | None:intergenic |
| TGGAATGGGAAATTAGGGGT+TGG | 0.568241 | 5.2:+71488893 | MS.gene76108:CDS |
| GGACATTCTACCATGAAACT+AGG | 0.571006 | 5.2:+71488947 | MS.gene76108:CDS |
| AACCAACAAATCCCTACATA+GGG | 0.573510 | 5.2:+71488572 | MS.gene76108:CDS |
| AGCCTTTATCAAAGAAAAGT+GGG | 0.590107 | 5.2:+71487590 | MS.gene76108:CDS |
| CTAGAGGGAAGATTATGGAA+TGG | 0.593772 | 5.2:+71488878 | MS.gene76108:CDS |
| GATACGTTGAGCCCTATGTA+GGG | 0.594917 | 5.2:-71488583 | None:intergenic |
| GAAGTCTCTCATCAGCTGCA+TGG | 0.595852 | 5.2:-71487515 | None:intergenic |
| AAGTTGATAAAGGTGCTAGA+GGG | 0.596415 | 5.2:+71488863 | MS.gene76108:CDS |
| TAAGCTAAGGAATATTGAGA+TGG | 0.598868 | 5.2:-71488993 | None:intergenic |
| CAAGTCTTAAGTGTATCCGT+TGG | 0.601844 | 5.2:+71488487 | MS.gene76108:CDS |
| AAAGTTGATAAAGGTGCTAG+AGG | 0.611968 | 5.2:+71488862 | MS.gene76108:CDS |
| AATATGGAGAAAGTGTGTGT+TGG | 0.621471 | 5.2:+71488839 | MS.gene76108:CDS |
| GTTGCAATGATACTCTTGAT+GGG | 0.657659 | 5.2:-71488444 | None:intergenic |
| CATTCTACCATGAAACTAGG+AGG | 0.670138 | 5.2:+71488950 | MS.gene76108:CDS |
| ATTATGGAATGGGAAATTAG+GGG | 0.711741 | 5.2:+71488889 | MS.gene76108:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAATATTTAAATTTCTT+TGG | + | chr5.2:71488345-71488364 | MS.gene76108:intron | 10.0% |
| !!! | AAAAAAAAAAAAAACCTTTT+AGG | - | chr5.2:71487732-71487751 | None:intergenic | 10.0% |
| !!! | AAAACTAATCTAAATTTTTT+TGG | + | chr5.2:71487892-71487911 | MS.gene76108:intron | 10.0% |
| !!! | TTAATTAATTCAAATTTTGA+AGG | - | chr5.2:71488736-71488755 | None:intergenic | 10.0% |
| !! | AAAAAAAGTAAAGATTTGAT+TGG | - | chr5.2:71488055-71488074 | None:intergenic | 15.0% |
| !!! | AGAAATTTTATTTGATGAAA+GGG | - | chr5.2:71488229-71488248 | None:intergenic | 15.0% |
| !! | GTTATAGTGCAAATTTAAAT+TGG | + | chr5.2:71488665-71488684 | MS.gene76108:CDS | 20.0% |
| !!! | AATCTAAATTTTTTTGGTAG+TGG | + | chr5.2:71487898-71487917 | MS.gene76108:intron | 20.0% |
| !!! | GAGAAATTTTATTTGATGAA+AGG | - | chr5.2:71488230-71488249 | None:intergenic | 20.0% |
| ! | AAGAAAACAAAACAAAAGAG+AGG | - | chr5.2:71488117-71488136 | None:intergenic | 25.0% |
| ! | AATCATAATATATGCAAGGT+CGG | - | chr5.2:71487938-71487957 | None:intergenic | 25.0% |
| ! | AATTAATTAACCCTAAGTCT+TGG | + | chr5.2:71488746-71488765 | MS.gene76108:CDS | 25.0% |
| ! | AGAAAACAAAACAAAAGAGA+GGG | - | chr5.2:71488116-71488135 | None:intergenic | 25.0% |
| ! | ATACTCGTTGTACTTAAATT+TGG | + | chr5.2:71488166-71488185 | MS.gene76108:intron | 25.0% |
| ! | CATTAAAAAGATCCAAACAA+AGG | + | chr5.2:71487808-71487827 | MS.gene76108:intron | 25.0% |
| ! | CTTATTTGCCTAATAAGTAT+AGG | + | chr5.2:71488926-71488945 | MS.gene76108:CDS | 25.0% |
| ! | GCATAATCATAATATATGCA+AGG | - | chr5.2:71487942-71487961 | None:intergenic | 25.0% |
| ! | TACTCGTTGTACTTAAATTT+GGG | + | chr5.2:71488167-71488186 | MS.gene76108:intron | 25.0% |
| ! | TAGAATGTCCTATACTTATT+AGG | - | chr5.2:71488937-71488956 | None:intergenic | 25.0% |
| !! | AAATTTGAAGAATCGGTTTA+TGG | + | chr5.2:71488643-71488662 | MS.gene76108:CDS | 25.0% |
| !! | GAAAATCCAATAATGGAAAT+AGG | + | chr5.2:71488520-71488539 | MS.gene76108:CDS | 25.0% |
| !!! | AAAAAACCTTTTAGGTTTGA+TGG | - | chr5.2:71487724-71487743 | None:intergenic | 25.0% |
| !!! | AGTTTTTTTACTCCTTTGTT+TGG | - | chr5.2:71487823-71487842 | None:intergenic | 25.0% |
| !!! | CTTTGTTTGGATCTTTTTAA+TGG | - | chr5.2:71487810-71487829 | None:intergenic | 25.0% |
| !!! | TCTTAATGTTTGTTGAGTTT+TGG | + | chr5.2:71488133-71488152 | MS.gene76108:intron | 25.0% |
| AAGCCTTTATCAAAGAAAAG+TGG | + | chr5.2:71487589-71487608 | MS.gene76108:CDS | 30.0% | |
| AGATTATGGAATGGGAAATT+AGG | + | chr5.2:71488887-71488906 | MS.gene76108:CDS | 30.0% | |
| AGCCTTTATCAAAGAAAAGT+GGG | + | chr5.2:71487590-71487609 | MS.gene76108:CDS | 30.0% | |
| ATACACTTAAGACTTGATGT+TGG | - | chr5.2:71488483-71488502 | None:intergenic | 30.0% | |
| ATCATAATATATGCAAGGTC+GGG | - | chr5.2:71487937-71487956 | None:intergenic | 30.0% | |
| ATCCTCAGAAAATCCAATAA+TGG | + | chr5.2:71488513-71488532 | MS.gene76108:CDS | 30.0% | |
| ATGTTTCCATCAAACCTAAA+AGG | + | chr5.2:71487715-71487734 | MS.gene76108:intron | 30.0% | |
| ATTATGGAATGGGAAATTAG+GGG | + | chr5.2:71488889-71488908 | MS.gene76108:CDS | 30.0% | |
| CTCAAATATCAACAACTTGA+AGG | + | chr5.2:71487546-71487565 | MS.gene76108:CDS | 30.0% | |
| GATTATGGAATGGGAAATTA+GGG | + | chr5.2:71488888-71488907 | MS.gene76108:CDS | 30.0% | |
| TATCTCTAAACCAAGACTTA+GGG | - | chr5.2:71488759-71488778 | None:intergenic | 30.0% | |
| TTGGTTTCTTCATGATAGTA+TGG | + | chr5.2:71488684-71488703 | MS.gene76108:CDS | 30.0% | |
| TTTCTTCATGATAGTATGGA+TGG | + | chr5.2:71488688-71488707 | MS.gene76108:CDS | 30.0% | |
| TTTCTTTGATAAAGGCTTTG+TGG | - | chr5.2:71487587-71487606 | None:intergenic | 30.0% | |
| ! | TGGATCTTTTTAATGGCAAA+TGG | - | chr5.2:71487803-71487822 | None:intergenic | 30.0% |
| ! | TTCCATTATTGGATTTTCTG+AGG | - | chr5.2:71488518-71488537 | None:intergenic | 30.0% |
| !! | ATTTTCTGAGGATTTTCCAA+CGG | - | chr5.2:71488506-71488525 | None:intergenic | 30.0% |
| !! | ATTTTTGCTGGTGATGAATA+TGG | + | chr5.2:71488823-71488842 | MS.gene76108:CDS | 30.0% |
| !! | TGTACTTAAATTTGGGTTGT+GGG | + | chr5.2:71488174-71488193 | MS.gene76108:intron | 30.0% |
| !! | TTGTACTTAAATTTGGGTTG+TGG | + | chr5.2:71488173-71488192 | MS.gene76108:intron | 30.0% |
| !!! | TAAATTTTTTTGGTAGTGGC+CGG | + | chr5.2:71487902-71487921 | MS.gene76108:intron | 30.0% |
| AACCAACAAATCCCTACATA+GGG | + | chr5.2:71488572-71488591 | MS.gene76108:CDS | 35.0% | |
| AGCTCCTCTTTCATTCATAA+GGG | - | chr5.2:71488404-71488423 | None:intergenic | 35.0% | |
| AGTTGCAATGATACTCTTGA+TGG | - | chr5.2:71488448-71488467 | None:intergenic | 35.0% | |
| CTAAGTCTTGGTTTAGAGAT+AGG | + | chr5.2:71488758-71488777 | MS.gene76108:CDS | 35.0% | |
| CTATCTCTAAACCAAGACTT+AGG | - | chr5.2:71488760-71488779 | None:intergenic | 35.0% | |
| GCCTTGGAAATTTGAAGAAT+CGG | + | chr5.2:71488636-71488655 | MS.gene76108:CDS | 35.0% | |
| GTTCGTGTATGTATTACAAG+TGG | + | chr5.2:71488082-71488101 | MS.gene76108:intron | 35.0% | |
| GTTGCAATGATACTCTTGAT+GGG | - | chr5.2:71488447-71488466 | None:intergenic | 35.0% | |
| TAGAGGGAAGATTATGGAAT+GGG | + | chr5.2:71488879-71488898 | MS.gene76108:CDS | 35.0% | |
| TCATAATATATGCAAGGTCG+GGG | - | chr5.2:71487936-71487955 | None:intergenic | 35.0% | |
| TCCATGCCTATTTCCATTAT+TGG | - | chr5.2:71488529-71488548 | None:intergenic | 35.0% | |
| TGGTGAACATTGACAACATA+AGG | + | chr5.2:71487622-71487641 | MS.gene76108:CDS | 35.0% | |
| ! | AATATGGAGAAAGTGTGTGT+TGG | + | chr5.2:71488839-71488858 | MS.gene76108:CDS | 35.0% |
| ! | ACCGATTCTTCAAATTTCCA+AGG | - | chr5.2:71488640-71488659 | None:intergenic | 35.0% |
| ! | CAACAATGAGTTTAAAGCCT+TGG | + | chr5.2:71488620-71488639 | MS.gene76108:CDS | 35.0% |
| ! | TATCGTCCTTTTACTAGACA+AGG | + | chr5.2:71488793-71488812 | MS.gene76108:CDS | 35.0% |
| ! | TCCAATAATGGAAATAGGCA+TGG | + | chr5.2:71488525-71488544 | MS.gene76108:CDS | 35.0% |
| !! | AAAGTTGATAAAGGTGCTAG+AGG | + | chr5.2:71488862-71488881 | MS.gene76108:CDS | 35.0% |
| !! | AAGTTGATAAAGGTGCTAGA+GGG | + | chr5.2:71488863-71488882 | MS.gene76108:CDS | 35.0% |
| !! | AGGCTTTAAACTCATTGTTG+TGG | - | chr5.2:71488620-71488639 | None:intergenic | 35.0% |
| !! | GACCCACTTTTCTTTGATAA+AGG | - | chr5.2:71487595-71487614 | None:intergenic | 35.0% |
| !! | GTGTGTTGGAAAGTTGATAA+AGG | + | chr5.2:71488853-71488872 | MS.gene76108:CDS | 35.0% |
| !!! | AAATTTTTTTGGTAGTGGCC+GGG | + | chr5.2:71487903-71487922 | MS.gene76108:intron | 35.0% |
| AAACTAGGAGGTTGGAGTTT+AGG | + | chr5.2:71488962-71488981 | MS.gene76108:CDS | 40.0% | |
| AACTAGGAGGTTGGAGTTTA+GGG | + | chr5.2:71488963-71488982 | MS.gene76108:CDS | 40.0% | |
| AAGACTTGATGTTGGAGTGT+TGG | - | chr5.2:71488475-71488494 | None:intergenic | 40.0% | |
| AGAAAAGTGGGTCGAAATCA+TGG | + | chr5.2:71487602-71487621 | MS.gene76108:CDS | 40.0% | |
| CAACCAACAAATCCCTACAT+AGG | + | chr5.2:71488571-71488590 | MS.gene76108:CDS | 40.0% | |
| CAAGTCTTAAGTGTATCCGT+TGG | + | chr5.2:71488487-71488506 | MS.gene76108:CDS | 40.0% | |
| CAGCTCCTCTTTCATTCATA+AGG | - | chr5.2:71488405-71488424 | None:intergenic | 40.0% | |
| CATTCTACCATGAAACTAGG+AGG | + | chr5.2:71488950-71488969 | MS.gene76108:CDS | 40.0% | |
| CTAGAGGGAAGATTATGGAA+TGG | + | chr5.2:71488878-71488897 | MS.gene76108:CDS | 40.0% | |
| CTTATGAATGAAAGAGGAGC+TGG | + | chr5.2:71488403-71488422 | MS.gene76108:CDS | 40.0% | |
| GACACCCTTATGAATGAAAG+AGG | + | chr5.2:71488397-71488416 | MS.gene76108:CDS | 40.0% | |
| GGACATTCTACCATGAAACT+AGG | + | chr5.2:71488947-71488966 | MS.gene76108:CDS | 40.0% | |
| ! | GTCCTTTTACTAGACAAGGT+GGG | + | chr5.2:71488797-71488816 | MS.gene76108:CDS | 40.0% |
| ! | TCCTTTTACTAGACAAGGTG+GGG | + | chr5.2:71488798-71488817 | MS.gene76108:CDS | 40.0% |
| !!! | AATTTTTTTGGTAGTGGCCG+GGG | + | chr5.2:71487904-71487923 | MS.gene76108:intron | 40.0% |
| ACCCCACCTTGTCTAGTAAA+AGG | - | chr5.2:71488802-71488821 | None:intergenic | 45.0% | |
| ACTCCAACCTCCTAGTTTCA+TGG | - | chr5.2:71488960-71488979 | None:intergenic | 45.0% | |
| AGCCCTATGTAGGGATTTGT+TGG | - | chr5.2:71488577-71488596 | None:intergenic | 45.0% | |
| AGGTGCTAGAGGGAAGATTA+TGG | + | chr5.2:71488873-71488892 | MS.gene76108:CDS | 45.0% | |
| CTACCATGAAACTAGGAGGT+TGG | + | chr5.2:71488954-71488973 | MS.gene76108:CDS | 45.0% | |
| GATACGTTGAGCCCTATGTA+GGG | - | chr5.2:71488586-71488605 | None:intergenic | 45.0% | |
| GGGAAATTAGGGGTTGGATA+TGG | + | chr5.2:71488899-71488918 | MS.gene76108:CDS | 45.0% | |
| TGATACGTTGAGCCCTATGT+AGG | - | chr5.2:71488587-71488606 | None:intergenic | 45.0% | |
| TGGAATGGGAAATTAGGGGT+TGG | + | chr5.2:71488893-71488912 | MS.gene76108:CDS | 45.0% | |
| ! | CGTCCTTTTACTAGACAAGG+TGG | + | chr5.2:71488796-71488815 | MS.gene76108:CDS | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr5.2:71487970-71487989 | None:intergenic | 45.0% |
| !!! | CAAGGTGGGGTTATTTTTGC+TGG | + | chr5.2:71488811-71488830 | MS.gene76108:CDS | 45.0% |
| ATAGGGCTCAACGTATCAGC+TGG | + | chr5.2:71488589-71488608 | MS.gene76108:CDS | 50.0% | |
| GAAGTCTCTCATCAGCTGCA+TGG | - | chr5.2:71487518-71487537 | None:intergenic | 50.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr5.2:71487972-71487991 | MS.gene76108:intron | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr5.2:71487975-71487994 | None:intergenic | 55.0% | |
| CAAGGTCGGGGTTCGAACCC+CGG | - | chr5.2:71487924-71487943 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 71487492 | 71489011 | 71487492 | ID=MS.gene76108 |
| chr5.2 | mRNA | 71487492 | 71489011 | 71487492 | ID=MS.gene76108.t1;Parent=MS.gene76108 |
| chr5.2 | exon | 71487492 | 71487643 | 71487492 | ID=MS.gene76108.t1.exon1;Parent=MS.gene76108.t1 |
| chr5.2 | CDS | 71487492 | 71487643 | 71487492 | ID=cds.MS.gene76108.t1;Parent=MS.gene76108.t1 |
| chr5.2 | exon | 71488372 | 71489011 | 71488372 | ID=MS.gene76108.t1.exon2;Parent=MS.gene76108.t1 |
| chr5.2 | CDS | 71488372 | 71489011 | 71488372 | ID=cds.MS.gene76108.t1;Parent=MS.gene76108.t1 |
| Gene Sequence |
| Protein sequence |
