AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76408

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76408.t1 MTR_8g077340 71.864 590 45 5 1 520 1 539 0.0 703
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76408.t1 AT2G18340 31.087 460 249 12 42 472 33 453 8.28e-12 67.8
MS.gene76408.t1 AT2G18340 30.531 452 240 12 42 472 33 431 5.14e-11 65.1

Find 115 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTATCTTTAGCATTAT+TGG 0.097673 8.1:+30369613 None:intergenic
GCCTCAAAGGCCACAGATTC+AGG 0.177634 8.1:-30370523 MS.gene76408:CDS
GGCCTTTGGATTTCGTTTCT+TGG 0.193418 8.1:+30369919 None:intergenic
TCCAACTGCACCCGAGGCCT+TGG 0.263118 8.1:+30369382 None:intergenic
TCCACCTACTTCCGGGGCCT+TGG 0.273004 8.1:+30370174 None:intergenic
GCTTTATTACCACCTGCTTC+CGG 0.279336 8.1:+30369896 None:intergenic
GCTTTATTTCCACCTACTTC+CGG 0.290103 8.1:+30369461 None:intergenic
GCTTTATTTCCACCTACTTC+CGG 0.290103 8.1:+30370166 None:intergenic
CCCTGAATCTGTGGCCTTTG+AGG 0.291421 8.1:+30370522 None:intergenic
AAATGCAAAATTTGTCTTGT+TGG 0.293483 8.1:-30370901 MS.gene76408:CDS
CTTTATTACCACCTGCTTCC+GGG 0.301021 8.1:+30369897 None:intergenic
CTTTATTTCCACCTACTTCC+GGG 0.306933 8.1:+30369462 None:intergenic
CTTTATTTCCACCTACTTCC+GGG 0.306933 8.1:+30370167 None:intergenic
CCACCTGCTTCCGGGGCCTT+TGG 0.311200 8.1:+30369905 None:intergenic
TCCAACTGCATCGGAGGCCT+TGG 0.311930 8.1:+30369208 None:intergenic
AATTGTTCTCATAGACATTT+CGG 0.320051 8.1:-30370601 MS.gene76408:intron
CCATATAGCCGCTGCTGATC+AGG 0.338715 8.1:-30370407 MS.gene76408:intron
TCCAAATGCATCTGAGGCCT+TGG 0.338887 8.1:+30369643 None:intergenic
GAAAGAAAAGCCCAAGGCTT+CGG 0.344663 8.1:-30369306 MS.gene76408:CDS
CCACCTACTTCCGGGGCCTT+AGG 0.357844 8.1:+30369470 None:intergenic
AAAGAAAAGCCCAAGGCTTC+GGG 0.361204 8.1:-30369305 MS.gene76408:CDS
CCACCTACTTCCGGGGCCTT+GGG 0.381111 8.1:+30370175 None:intergenic
GCTAAAGCAGGCGGTGCATA+TGG 0.388330 8.1:-30369947 MS.gene76408:CDS
GATAAAGAAAATAGCGCATC+TGG 0.392610 8.1:-30370043 MS.gene76408:CDS
GATAAAGAAAATAGTGCATC+TGG 0.393061 8.1:-30369599 MS.gene76408:CDS
GATAAAGAAAATAGTGCATC+TGG 0.393061 8.1:-30370130 MS.gene76408:CDS
AACAAAAGGAGCAGCTGATC+AGG 0.398629 8.1:-30370299 MS.gene76408:CDS
AACAAAAGGAGCAGCTGATC+AGG 0.398629 8.1:-30370353 MS.gene76408:CDS
GAAAGAAAAGCCCAAGGCCT+CGG 0.402206 8.1:-30369393 MS.gene76408:CDS
CCAACTGCACCCGAGGCCTT+GGG 0.402344 8.1:+30369383 None:intergenic
GATAAAGAAAGTGGTGCATC+TGG 0.410648 8.1:-30369338 MS.gene76408:CDS
TTCTTTATCTTTAGCAACAT+TGG 0.416336 8.1:+30369526 None:intergenic
TTCTTTATCTTTAGCAACAT+TGG 0.416336 8.1:+30369700 None:intergenic
TTCTTTATCTTTAGCAACAT+TGG 0.416336 8.1:+30369787 None:intergenic
TCCAACTGCACCCGAAGCCT+TGG 0.423941 8.1:+30369295 None:intergenic
CCCAAGGCCTCAGATGCATT+TGG 0.424689 8.1:-30369644 MS.gene76408:CDS
GATAAAGAAAATAATGCATC+TGG 0.428421 8.1:-30369425 MS.gene76408:CDS
AATCCAAAGGCCCCGGAAGC+AGG 0.430052 8.1:-30369908 MS.gene76408:CDS
TGGATCTCCTACTGAGTCTT+GGG 0.430096 8.1:+30369131 None:intergenic
GGCCTTAGGATTTCTGTGCT+TGG 0.432119 8.1:+30369484 None:intergenic
CCGAAGGCCTCGGATGCAGC+TGG 0.439921 8.1:-30369731 MS.gene76408:CDS
CCGAAGGCCTCGGATGCAGC+TGG 0.439921 8.1:-30369818 MS.gene76408:CDS
TTCTTTATCTTTAGCAACAT+TGG 0.444772 8.1:+30369352 None:intergenic
CCCAAGGCCTCGGGTGCAGT+TGG 0.446487 8.1:-30369383 MS.gene76408:CDS
CCAAATGCATCTGAGGCCTT+GGG 0.452830 8.1:+30369644 None:intergenic
GATAAAGAAAATAGTGCATC+CGG 0.454204 8.1:-30369686 MS.gene76408:CDS
GATAAAGAAAATAGTGCATC+CGG 0.454204 8.1:-30369773 MS.gene76408:CDS
GATAAAGAAAATAGTGCATC+CGG 0.454204 8.1:-30369860 MS.gene76408:CDS
GAAACAAAAGCCGAAGGCCT+CGG 0.457036 8.1:-30369741 MS.gene76408:CDS
GAAACAAAAGCCGAAGGCCT+CGG 0.457036 8.1:-30369828 MS.gene76408:CDS
ATGGATCTCCTACTGAGTCT+TGG 0.459860 8.1:+30369130 None:intergenic
CCAGCTGCATCCGAGGCCTT+CGG 0.460223 8.1:+30369731 None:intergenic
CCAGCTGCATCCGAGGCCTT+CGG 0.460223 8.1:+30369818 None:intergenic
TTCTTTATCTTTAACAACAT+TGG 0.463871 8.1:+30369265 None:intergenic
CCAACTGCATCGGAGGCCTT+GGG 0.465410 8.1:+30369209 None:intergenic
GATAAAGAAAATAGTGCAGC+TGG 0.473192 8.1:-30369512 MS.gene76408:CDS
GAAACAAAAGCCTAAGGCCT+CGG 0.476376 8.1:-30370098 MS.gene76408:CDS
CCAACTGCACCCGAAGCCTT+GGG 0.484964 8.1:+30369296 None:intergenic
ACAAAAGGAGCAGCTGAAGA+TGG 0.487902 8.1:-30370244 MS.gene76408:CDS
AAAGAAAAGCCCAAGGCCTC+GGG 0.488466 8.1:-30369392 MS.gene76408:CDS
CCCAAGGCTTCGGGTGCAGT+TGG 0.489047 8.1:-30369296 MS.gene76408:CDS
CCAGCTGCATCTGAGGCCTT+AGG 0.495820 8.1:+30369557 None:intergenic
GATGCTAAAGAGAAAACAAA+AGG 0.507878 8.1:-30370259 MS.gene76408:CDS
GATGCTAAAGAGAAAACAAA+AGG 0.507878 8.1:-30370313 MS.gene76408:CDS
GATGCTAAAGAGAAAACAAA+AGG 0.507878 8.1:-30370367 MS.gene76408:CDS
TCTTTAACATCAGAGGCCTT+AGG 0.511034 8.1:+30370001 None:intergenic
AGCTGAAGCTGCTGCCTCAA+AGG 0.511276 8.1:-30370536 MS.gene76408:CDS
TACTTTCTCTTTAACATCAG+AGG 0.515846 8.1:+30369994 None:intergenic
CCTCAAAGGCCACAGATTCA+GGG 0.518776 8.1:-30370522 MS.gene76408:CDS
GAAACGAAATCCAAAGGCCC+CGG 0.519490 8.1:-30369915 MS.gene76408:CDS
TTTATCTCCAGCTGCATCTG+AGG 0.519866 8.1:+30369550 None:intergenic
TAGACATTTCGGCTCAAAAG+AGG 0.520960 8.1:-30370590 MS.gene76408:CDS
CCTAAGGCCTCAGATGCAGC+TGG 0.521830 8.1:-30369557 MS.gene76408:CDS
AATCCTAAGGCCCCGGAAGT+AGG 0.522917 8.1:-30369473 MS.gene76408:CDS
AATCCCAAGGCCCCGGAAGT+AGG 0.522917 8.1:-30370178 MS.gene76408:CDS
AAAGCAAGTAGTGCATATAG+TGG 0.531958 8.1:-30370214 MS.gene76408:CDS
AGCTTTATCTCCAACTGCAT+CGG 0.544510 8.1:+30369199 None:intergenic
GCAACGAAATCCCAAGGCCC+CGG 0.545665 8.1:-30370185 MS.gene76408:CDS
GTTGCTAAAGATAAAGAAAG+TGG 0.546622 8.1:-30369347 MS.gene76408:CDS
GCACAGAAATCCTAAGGCCC+CGG 0.547115 8.1:-30369480 MS.gene76408:CDS
CCAACTGCATCCGAGGCCTT+AGG 0.550068 8.1:+30370088 None:intergenic
CCCAAGGCCTCCGATGCAGT+TGG 0.557431 8.1:-30369209 MS.gene76408:CDS
CCCAAGGCCCCGGAAGTAGG+TGG 0.560916 8.1:-30370175 MS.gene76408:CDS
CCTAAGGCCTCGGATGCAGT+TGG 0.566355 8.1:-30370088 MS.gene76408:CDS
TTGATCTCCAAATGCATCTG+AGG 0.568485 8.1:+30369637 None:intergenic
CCTAAGGCCCCGGAAGTAGG+TGG 0.569842 8.1:-30369470 MS.gene76408:CDS
CTTATCTCCAACTGCACCCG+AGG 0.585136 8.1:+30369376 None:intergenic
AACCAAGCACAGAAATCCTA+AGG 0.585415 8.1:-30369486 MS.gene76408:CDS
TTTATCTCCAGCTGCATCCG+AGG 0.588573 8.1:+30369724 None:intergenic
TTTATCTCCAGCTGCATCCG+AGG 0.588573 8.1:+30369811 None:intergenic
TGAAAAGCCCAAGACTCAGT+AGG 0.590771 8.1:-30369138 None:intergenic
AGCCAAGAAACAAAAGCCTA+AGG 0.592040 8.1:-30369573 MS.gene76408:CDS
AGCCAAGAAACAAAAGCCTA+AGG 0.592040 8.1:-30370017 MS.gene76408:CDS
AGCCAAGAAACAAAAGCCTA+AGG 0.592040 8.1:-30370104 MS.gene76408:CDS
AGCCAAGAAACGAAATCCAA+AGG 0.597720 8.1:-30369921 MS.gene76408:CDS
GAACACGGAAAAGCTAAAGC+AGG 0.601184 8.1:-30369959 MS.gene76408:CDS
TTTATTACCACCTGCTTCCG+GGG 0.603149 8.1:+30369898 None:intergenic
TCTACACAACTCTACACATA+CGG 0.605930 8.1:+30370866 None:intergenic
AGCCCATCGAGCAAAAGTCT+CGG 0.609947 8.1:+30370776 None:intergenic
AAAGAAAATAGTGCAGCTGG+TGG 0.613688 8.1:-30369509 MS.gene76408:CDS
TTTATCTCCAACTGCATCGG+AGG 0.614203 8.1:+30369202 None:intergenic
TTTATCTCCAACTGCATCCG+AGG 0.614203 8.1:+30370081 None:intergenic
CCAAAGGCCCCGGAAGCAGG+TGG 0.615708 8.1:-30369905 MS.gene76408:CDS
GTAAAAGAAGCAGTTGAACA+CGG 0.616205 8.1:-30369974 MS.gene76408:CDS
AAACAAGCAACGAAATCCCA+AGG 0.624410 8.1:-30370191 MS.gene76408:CDS
TTTATTTCCACCTACTTCCG+GGG 0.641914 8.1:+30369463 None:intergenic
TTTATTTCCACCTACTTCCG+GGG 0.641914 8.1:+30370168 None:intergenic
AGCCAAGAAACAAAAGCCCA+AGG 0.644467 8.1:-30369660 MS.gene76408:CDS
AGCCAAGAAACAAAAGCCGA+AGG 0.644467 8.1:-30369747 MS.gene76408:CDS
AGCCAAGAAACAAAAGCCGA+AGG 0.644467 8.1:-30369834 MS.gene76408:CDS
CACGGAAAAGCTAAAGCAGG+CGG 0.657070 8.1:-30369956 MS.gene76408:CDS
AGCCAAGAAAGAAAAGCCCA+AGG 0.677269 8.1:-30369225 MS.gene76408:CDS
AGCCAAGAAAGAAAAGCCCA+AGG 0.677269 8.1:-30369312 MS.gene76408:CDS
AGCCAAGAAAGAAAAGCCCA+AGG 0.677269 8.1:-30369399 MS.gene76408:CDS
GTTGTGTAGACCAGACGACG+TGG 0.725809 8.1:-30370853 MS.gene76408:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATGATAACTTTTTAAGTT+TGG + chr8.1:30369412-30369431 None:intergenic 15.0%
!! GAATTAATATATACCAGTAA+GGG + chr8.1:30369596-30369615 None:intergenic 20.0%
!! TGAATTAATATATACCAGTA+AGG + chr8.1:30369597-30369616 None:intergenic 20.0%
!! TTCTTTATCTTTAACAACAT+TGG + chr8.1:30370789-30370808 None:intergenic 20.0%
!! TTCTTTATCTTTAGCATTAT+TGG + chr8.1:30370441-30370460 None:intergenic 20.0%
!!! GTTTTCTTGTTCATAAAATT+AGG - chr8.1:30369386-30369405 MS.gene76408:CDS 20.0%
! AAATGCAAAATTTGTCTTGT+TGG - chr8.1:30369150-30369169 MS.gene76408:CDS 25.0%
! AATTGTTCTCATAGACATTT+CGG - chr8.1:30369450-30369469 MS.gene76408:CDS 25.0%
! ACAATATTACCTAGATTTCA+TGG - chr8.1:30369364-30369383 MS.gene76408:CDS 25.0%
! GATAAAGAAAATAATGCATC+TGG - chr8.1:30370626-30370645 MS.gene76408:intron 25.0%
! TTCTTTATCTTTAGCAACAT+TGG + chr8.1:30369910-30369929 None:intergenic 25.0%
!!! TTTTGTTTTCTCTTTAGCAT+CGG + chr8.1:30369685-30369704 None:intergenic 25.0%
ACAAGAAAACCATGAAATCT+AGG + chr8.1:30369376-30369395 None:intergenic 30.0%
GATAAAGAAAATAGTGCATC+CGG - chr8.1:30369921-30369940 MS.gene76408:CDS 30.0%
GATAAAGAAAATAGTGCATC+TGG - chr8.1:30369921-30369940 MS.gene76408:CDS 30.0%
GATGCTAAAGAGAAAACAAA+AGG - chr8.1:30369684-30369703 MS.gene76408:CDS 30.0%
GTTGCTAAAGATAAAGAAAG+TGG - chr8.1:30370704-30370723 MS.gene76408:intron 30.0%
TACTTTCTCTTTAACATCAG+AGG + chr8.1:30370060-30370079 None:intergenic 30.0%
!!! ATATTTTTTCCCTGAATCTG+TGG + chr8.1:30369541-30369560 None:intergenic 30.0%
AAAGCAAGTAGTGCATATAG+TGG - chr8.1:30369837-30369856 MS.gene76408:CDS 35.0%
GAAAATGCCAAAGAAAAAGC+TGG - chr8.1:30369223-30369242 MS.gene76408:CDS 35.0%
GATAAAGAAAATAGCGCATC+TGG - chr8.1:30370008-30370027 MS.gene76408:CDS 35.0%
GATAAAGAAAATAGTGCAGC+TGG - chr8.1:30370539-30370558 MS.gene76408:CDS 35.0%
GTAAAAGAAGCAGTTGAACA+CGG - chr8.1:30370077-30370096 MS.gene76408:CDS 35.0%
TCATTGACATTAACCCTTAC+TGG - chr8.1:30369580-30369599 MS.gene76408:CDS 35.0%
TCTACACAACTCTACACATA+CGG + chr8.1:30369188-30369207 None:intergenic 35.0%
!! AAAAGTCTCGGATTTTTCAG+TGG + chr8.1:30369266-30369285 None:intergenic 35.0%
AAACAAGCAACGAAATCCCA+AGG - chr8.1:30369860-30369879 MS.gene76408:CDS 40.0%
AAAGAAAATAGTGCAGCTGG+TGG - chr8.1:30370542-30370561 MS.gene76408:CDS 40.0%
AACCAAGCACAGAAATCCTA+AGG - chr8.1:30370565-30370584 MS.gene76408:CDS 40.0%
AGCCAAGAAACAAAAGCCTA+AGG - chr8.1:30369947-30369966 MS.gene76408:CDS 40.0%
AGCCAAGAAACGAAATCCAA+AGG - chr8.1:30370130-30370149 MS.gene76408:CDS 40.0%
AGCTGATCAGGCTTCAAAAA+CGG - chr8.1:30369710-30369729 MS.gene76408:CDS 40.0%
GATAAAGAAAGTGGTGCATC+TGG - chr8.1:30370713-30370732 MS.gene76408:intron 40.0%
TAGACATTTCGGCTCAAAAG+AGG - chr8.1:30369461-30369480 MS.gene76408:CDS 40.0%
TCAGGGAAAAAATATGCAGC+AGG - chr8.1:30369546-30369565 MS.gene76408:CDS 40.0%
TCTTTAACATCAGAGGCCTT+AGG + chr8.1:30370053-30370072 None:intergenic 40.0%
TGCTGATCAGGCTTCAAAAA+CGG - chr8.1:30369656-30369675 MS.gene76408:CDS 40.0%
TTGATCTCCAAATGCATCTG+AGG + chr8.1:30370417-30370436 None:intergenic 40.0%
TTTATTTCCACCTACTTCCG+GGG + chr8.1:30369886-30369905 None:intergenic 40.0%
! AGCTTTATCTCCAACTGCAT+CGG + chr8.1:30369976-30369995 None:intergenic 40.0%
! CTTTATTTCCACCTACTTCC+GGG + chr8.1:30369887-30369906 None:intergenic 40.0%
!! CTTTTGTTTCTTGGCTTCAC+CGG + chr8.1:30369943-30369962 None:intergenic 40.0%
!! GCTTTATTTCCACCTACTTC+CGG + chr8.1:30369888-30369907 None:intergenic 40.0%
!! TACCTCTCCAGCTTTTTCTT+TGG + chr8.1:30369233-30369252 None:intergenic 40.0%
AAAGAAAAGCCCAAGGCTTC+GGG - chr8.1:30370746-30370765 MS.gene76408:intron 45.0%
AACAAAAGGAGCAGCTGATC+AGG - chr8.1:30369698-30369717 MS.gene76408:CDS 45.0%
ACAAAAGGAGCAGCTGAAGA+TGG - chr8.1:30369807-30369826 MS.gene76408:CDS 45.0%
AGCCAAGAAACAAAAGCCCA+AGG - chr8.1:30370391-30370410 MS.gene76408:CDS 45.0%
AGCCAAGAAACAAAAGCCGA+AGG - chr8.1:30370217-30370236 MS.gene76408:CDS 45.0%
AGCCAAGAAAGAAAAGCCCA+AGG - chr8.1:30370652-30370671 MS.gene76408:intron 45.0%
CTTTATTACCACCTGCTTCC+GGG + chr8.1:30370157-30370176 None:intergenic 45.0%
GAAACAAAAGCCTAAGGCCT+CGG - chr8.1:30369953-30369972 MS.gene76408:CDS 45.0%
GAAAGAAAAGCCCAAGGCTT+CGG - chr8.1:30370745-30370764 MS.gene76408:intron 45.0%
GAACACGGAAAAGCTAAAGC+AGG - chr8.1:30370092-30370111 MS.gene76408:CDS 45.0%
GGCCTTTGGATTTCGTTTCT+TGG + chr8.1:30370135-30370154 None:intergenic 45.0%
TGCCAAAGAAAAAGCTGGAG+AGG - chr8.1:30369228-30369247 MS.gene76408:CDS 45.0%
TTTATCTCCAACTGCATCCG+AGG + chr8.1:30369973-30369992 None:intergenic 45.0%
TTTATCTCCAACTGCATCGG+AGG + chr8.1:30370852-30370871 None:intergenic 45.0%
TTTATCTCCAGCTGCATCTG+AGG + chr8.1:30370504-30370523 None:intergenic 45.0%
TTTATTACCACCTGCTTCCG+GGG + chr8.1:30370156-30370175 None:intergenic 45.0%
! AATCCGAGACTTTTGCTCGA+TGG - chr8.1:30369272-30369291 MS.gene76408:CDS 45.0%
! AGCCTTGGGCTTTTCTTTCT+TGG + chr8.1:30370744-30370763 None:intergenic 45.0%
! ATCCGAGACTTTTGCTCGAT+GGG - chr8.1:30369273-30369292 MS.gene76408:CDS 45.0%
! GCTTTATTACCACCTGCTTC+CGG + chr8.1:30370158-30370177 None:intergenic 45.0%
! TACTGAGTCTTGGGCTTTTC+AGG + chr8.1:30370914-30370933 None:intergenic 45.0%
!! GGCCTTAGGCTTTTGTTTCT+TGG + chr8.1:30369952-30369971 None:intergenic 45.0%
!!! TTTTGAAGCCTGATCAGCAG+CGG + chr8.1:30369655-30369674 None:intergenic 45.0%
AAAGAAAAGCCCAAGGCCTC+GGG - chr8.1:30370659-30370678 MS.gene76408:intron 50.0%
AGCCCATCGAGCAAAAGTCT+CGG + chr8.1:30369278-30369297 None:intergenic 50.0%
CACGGAAAAGCTAAAGCAGG+CGG - chr8.1:30370095-30370114 MS.gene76408:CDS 50.0%
CCTCAAAGGCCACAGATTCA+GGG - chr8.1:30369529-30369548 MS.gene76408:CDS 50.0%
GAAACAAAAGCCGAAGGCCT+CGG - chr8.1:30370223-30370242 MS.gene76408:CDS 50.0%
GAAACGAAATCCAAAGGCCC+CGG - chr8.1:30370136-30370155 MS.gene76408:CDS 50.0%
GAAAGAAAAGCCCAAGGCCT+CGG - chr8.1:30370658-30370677 MS.gene76408:intron 50.0%
GGCCTTAGGATTTCTGTGCT+TGG + chr8.1:30370570-30370589 None:intergenic 50.0%
TTTATCTCCAGCTGCATCCG+AGG + chr8.1:30370243-30370262 None:intergenic 50.0%
! CCAAATGCATCTGAGGCCTT+GGG + chr8.1:30370410-30370429 None:intergenic 50.0%
! GCATTTTCAACCACGTCGTC+TGG + chr8.1:30369211-30369230 None:intergenic 50.0%
! GGCCTTGGGCTTTTCTTTCT+TGG + chr8.1:30370657-30370676 None:intergenic 50.0%
! TCCAAATGCATCTGAGGCCT+TGG + chr8.1:30370411-30370430 None:intergenic 50.0%
!! GGCCTTCGGCTTTTGTTTCT+TGG + chr8.1:30370222-30370241 None:intergenic 50.0%
!! GGCCTTGGGCTTTTGTTTCT+TGG + chr8.1:30370396-30370415 None:intergenic 50.0%
AATCCTAAGGCCCCGGAAGT+AGG - chr8.1:30370578-30370597 MS.gene76408:CDS 55.0%
AGCTGAAGCTGCTGCCTCAA+AGG - chr8.1:30369515-30369534 MS.gene76408:CDS 55.0%
CCATATAGCCGCTGCTGATC+AGG - chr8.1:30369644-30369663 MS.gene76408:CDS 55.0%
CCCAAGGCCTCAGATGCATT+TGG - chr8.1:30370407-30370426 MS.gene76408:intron 55.0%
CCCTGAATCTGTGGCCTTTG+AGG + chr8.1:30369532-30369551 None:intergenic 55.0%
CCTGATCAGCAGCGGCTATA+TGG + chr8.1:30369647-30369666 None:intergenic 55.0%
CTTATCTCCAACTGCACCCG+AGG + chr8.1:30370678-30370697 None:intergenic 55.0%
GCACAGAAATCCTAAGGCCC+CGG - chr8.1:30370571-30370590 MS.gene76408:CDS 55.0%
GCCTCAAAGGCCACAGATTC+AGG - chr8.1:30369528-30369547 MS.gene76408:CDS 55.0%
GCTAAAGCAGGCGGTGCATA+TGG - chr8.1:30370104-30370123 MS.gene76408:CDS 55.0%
GTTGTGTAGACCAGACGACG+TGG - chr8.1:30369198-30369217 MS.gene76408:CDS 55.0%
AATCCAAAGGCCCCGGAAGC+AGG - chr8.1:30370143-30370162 MS.gene76408:CDS 60.0%
AATCCCAAGGCCCCGGAAGT+AGG - chr8.1:30369873-30369892 MS.gene76408:CDS 60.0%
CCAACTGCACCCGAAGCCTT+GGG + chr8.1:30370758-30370777 None:intergenic 60.0%
CCAACTGCATCCGAGGCCTT+AGG + chr8.1:30369966-30369985 None:intergenic 60.0%
CCAACTGCATCGGAGGCCTT+GGG + chr8.1:30370845-30370864 None:intergenic 60.0%
CCTAAGGCCTCAGATGCAGC+TGG - chr8.1:30370494-30370513 MS.gene76408:intron 60.0%
CCTAAGGCCTCGGATGCAGT+TGG - chr8.1:30369963-30369982 MS.gene76408:CDS 60.0%
GCAACGAAATCCCAAGGCCC+CGG - chr8.1:30369866-30369885 MS.gene76408:CDS 60.0%
TCCAACTGCACCCGAAGCCT+TGG + chr8.1:30370759-30370778 None:intergenic 60.0%
TCCAACTGCATCGGAGGCCT+TGG + chr8.1:30370846-30370865 None:intergenic 60.0%
! CCAGCTGCATCTGAGGCCTT+AGG + chr8.1:30370497-30370516 None:intergenic 60.0%
CCAACTGCACCCGAGGCCTT+GGG + chr8.1:30370671-30370690 None:intergenic 65.0%
CCACCTACTTCCGGGGCCTT+AGG + chr8.1:30369879-30369898 None:intergenic 65.0%
CCACCTACTTCCGGGGCCTT+GGG + chr8.1:30369879-30369898 None:intergenic 65.0%
CCAGCTGCATCCGAGGCCTT+CGG + chr8.1:30370236-30370255 None:intergenic 65.0%
CCCAAGGCCTCCGATGCAGT+TGG - chr8.1:30370842-30370861 MS.gene76408:CDS 65.0%
CCCAAGGCTTCGGGTGCAGT+TGG - chr8.1:30370755-30370774 MS.gene76408:intron 65.0%
CCTAAGGCCCCGGAAGTAGG+TGG - chr8.1:30370581-30370600 MS.gene76408:CDS 65.0%
TCCAACTGCACCCGAGGCCT+TGG + chr8.1:30370672-30370691 None:intergenic 65.0%
TCCACCTACTTCCGGGGCCT+TGG + chr8.1:30369880-30369899 None:intergenic 65.0%
CCAAAGGCCCCGGAAGCAGG+TGG - chr8.1:30370146-30370165 MS.gene76408:CDS 70.0%
CCACCTGCTTCCGGGGCCTT+TGG + chr8.1:30370149-30370168 None:intergenic 70.0%
CCCAAGGCCCCGGAAGTAGG+TGG - chr8.1:30369876-30369895 MS.gene76408:CDS 70.0%
CCCAAGGCCTCGGGTGCAGT+TGG - chr8.1:30370668-30370687 MS.gene76408:intron 70.0%
CCGAAGGCCTCGGATGCAGC+TGG - chr8.1:30370233-30370252 MS.gene76408:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 30369139 30370934 30369139 ID=MS.gene76408
chr8.1 mRNA 30369139 30370934 30369139 ID=MS.gene76408.t1;Parent=MS.gene76408
chr8.1 exon 30370759 30370934 30370759 ID=MS.gene76408.t1.exon1;Parent=MS.gene76408.t1
chr8.1 CDS 30370759 30370934 30370759 ID=cds.MS.gene76408.t1;Parent=MS.gene76408.t1
chr8.1 exon 30370506 30370609 30370506 ID=MS.gene76408.t1.exon2;Parent=MS.gene76408.t1
chr8.1 CDS 30370506 30370609 30370506 ID=cds.MS.gene76408.t1;Parent=MS.gene76408.t1
chr8.1 exon 30369139 30370421 30369139 ID=MS.gene76408.t1.exon3;Parent=MS.gene76408.t1
chr8.1 CDS 30369139 30370421 30369139 ID=cds.MS.gene76408.t1;Parent=MS.gene76408.t1
Gene Sequence

>MS.gene76408

ATGAAGATACAAAATGCAAAATTTGTCTTGTTGGTTTTATGTCTCTCCGTATGTGTAGAGTTGTGTAGACCAGACGACGTGGTTGAAAATGCCAAAGAAAAAGCTGGAGAGGTAGTCGATGATGCCACTGAAAAATCCGAGACTTTTGCTCGATGGGCTTATGATAAGATTTCTGAGTAAGTACTGCTAATTCTCATAATTCTACACATCTTAATTTGAACAATAACAATATTACCTAGATTTCATGGTTTTCTTGTTCATAAAATTAGGCCAAACTTAAAAAGTTATCATTTCATTCATCATTGATATGCAATTGTTCTCATAGACATTTCGGCTCAAAAGAGGAAATTGAAATATCACAAAATGTAAAGTTACAAGCTGAAGCTGCTGCCTCAAAGGCCACAGATTCAGGGAAAAAATATGCAGCAGGTACATAGTTGTTCATTGACATTAACCCTTACTGGTATATATTAATTCAAATAAAGCTTACAATGTTTATCATTTTCCATATAGCCGCTGCTGATCAGGCTTCAAAAACGGCTTCCGATGCTAAAGAGAAAACAAAAGGAGCAGCTGATCAGGCTTCAAAAACGGCTTCCGATGCTAAAGAGAAAACAAAAGGAGCAGCTGATCAGGCTTCAAAAACGGCTTCCGATGCTAAAGAGAAAACAAAAGGAGCAGCTGAAGATGGAAAAGCTAAAGCAAGTAGTGCATATAGTGGAAACAAGCAACGAAATCCCAAGGCCCCGGAAGTAGGTGGAAATAAAGCTAATGTTGCTAAAGATAAAGAAAATAGTGCATCTGGTGAAGCCAAGAAACAAAAGCCTAAGGCCTCGGATGCAGTTGGAGATAAAGCTAATGTTGCTAAAGATAAAGAAAATAGCGCATCTGGTGAAGCCAAGAAACAAAAGCCTAAGGCCTCTGATGTTAAAGAGAAAGTAAAAGAAGCAGTTGAACACGGAAAAGCTAAAGCAGGCGGTGCATATGGTGCAGCCAAGAAACGAAATCCAAAGGCCCCGGAAGCAGGTGGTAATAAAGCTAATGTTGCTAAAGATAAAGAAAATAGTGCATCCGGTGAAGCCAAGAAACAAAAGCCGAAGGCCTCGGATGCAGCTGGAGATAAAGCCAATGTTGCTAAAGATAAAGAAAATAGTGCATCCGGTGAAGCCAAGAAACAAAAGCCGAAGGCCTCGGATGCAGCTGGAGATAAAGCCAATGTTGCTAAAGATAAAGAAAATAGTGCATCCGGTGAAGCCAAGAAACAAAAGCCCAAGGCCTCAGATGCATTTGGAGATCAAGCCAATAATGCTAAAGATAAAGAAAATAGTGCATCTGGTGAAGCCAAGAAACAAAAGCCTAAGGCCTCAGATGCAGCTGGAGATAAAGCCAATGTTGCTAAAGATAAAGAAAATAGTGCAGCTGGTGGAACCAAGCACAGAAATCCTAAGGCCCCGGAAGTAGGTGGAAATAAAGCTAATGTTGCTAAAGATAAAGAAAATAATGCATCTGGTGAAGCCAAGAAAGAAAAGCCCAAGGCCTCGGGTGCAGTTGGAGATAAGACCAATGTTGCTAAAGATAAAGAAAGTGGTGCATCTGGTGAAGCCAAGAAAGAAAAGCCCAAGGCTTCGGGTGCAGTTGGAGATAAGACCAATGTTGTTAAAGATAAAGAAAGTGATGCATCTAGTGAAGCCAAGAAAGAAAAGCCCAAGGCCTCCGATGCAGTTGGAGATAAAGCTAATGCTGCTAAAGATGCAACAAAGAAAACTGCAACTCCTGAAAAGCCCAAGACTCAGTAG
Protein sequence

>MS.gene76408.t1

MKIQNAKFVLLVLCLSVCVELCRPDDVVENAKEKAGEVVDDATEKSETFARWAYDKISEHFGSKEEIEISQNVKLQAEAAASKATDSGKKYAAAAADQASKTASDAKEKTKGAADQASKTASDAKEKTKGAADQASKTASDAKEKTKGAAEDGKAKASSAYSGNKQRNPKAPEVGGNKANVAKDKENSASGEAKKQKPKASDAVGDKANVAKDKENSASGEAKKQKPKASDVKEKVKEAVEHGKAKAGGAYGAAKKRNPKAPEAGGNKANVAKDKENSASGEAKKQKPKASDAAGDKANVAKDKENSASGEAKKQKPKASDAAGDKANVAKDKENSASGEAKKQKPKASDAFGDQANNAKDKENSASGEAKKQKPKASDAAGDKANVAKDKENSAAGGTKHRNPKAPEVGGNKANVAKDKENNASGEAKKEKPKASGAVGDKTNVAKDKESGASGEAKKEKPKASGAVGDKTNVVKDKESDASSEAKKEKPKASDAVGDKANAAKDATKKTATPEKPKTQ