Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77020.t1 | XP_003605353.1 | 95 | 199 | 10 | 0 | 1 | 199 | 1 | 199 | 3.20E-100 | 374.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77020.t1 | Q9LZX1 | 55.9 | 188 | 77 | 3 | 15 | 197 | 27 | 213 | 8.6e-54 | 211.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77020.t1 | G7JJK4 | 95.0 | 199 | 10 | 0 | 1 | 199 | 1 | 199 | 2.3e-100 | 374.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene77020 | 0.808531 | 2.96E-50 | -1.69E-46 |
| MS.gene049197 | MS.gene77020 | 0.813333 | 2.70E-51 | -1.69E-46 |
| MS.gene04919 | MS.gene77020 | 0.800445 | 1.44E-48 | -1.69E-46 |
| MS.gene04920 | MS.gene77020 | 0.82551 | 4.51E-54 | -1.69E-46 |
| MS.gene049283 | MS.gene77020 | 0.811257 | 7.66E-51 | -1.69E-46 |
| MS.gene049499 | MS.gene77020 | 0.803808 | 2.92E-49 | -1.69E-46 |
| MS.gene051699 | MS.gene77020 | 0.835297 | 1.82E-56 | -1.69E-46 |
| MS.gene052570 | MS.gene77020 | 0.833635 | 4.76E-56 | -1.69E-46 |
| MS.gene054490 | MS.gene77020 | 0.803029 | 4.24E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene77020 | 0.805265 | 1.45E-49 | -1.69E-46 |
| MS.gene05952 | MS.gene77020 | 0.826168 | 3.15E-54 | -1.69E-46 |
| MS.gene05985 | MS.gene77020 | -0.826759 | 2.27E-54 | -1.69E-46 |
| MS.gene060522 | MS.gene77020 | 0.803924 | 2.76E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene77020 | 0.804304 | 2.30E-49 | -1.69E-46 |
| MS.gene061160 | MS.gene77020 | 0.822379 | 2.44E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77020.t1 | MTR_4g029430 | 94.975 | 199 | 10 | 0 | 1 | 199 | 1 | 199 | 1.03e-140 | 393 |
| MS.gene77020.t1 | MTR_7g072270 | 62.567 | 187 | 65 | 2 | 15 | 197 | 22 | 207 | 2.04e-82 | 246 |
| MS.gene77020.t1 | MTR_7g072120 | 61.257 | 191 | 68 | 3 | 13 | 198 | 21 | 210 | 1.35e-81 | 244 |
| MS.gene77020.t1 | MTR_7g072140 | 61.458 | 192 | 68 | 3 | 11 | 197 | 19 | 209 | 2.16e-81 | 243 |
| MS.gene77020.t1 | MTR_7g072170 | 59.788 | 189 | 70 | 3 | 15 | 198 | 23 | 210 | 1.78e-78 | 236 |
| MS.gene77020.t1 | MTR_7g072250 | 54.271 | 199 | 79 | 3 | 12 | 200 | 44 | 240 | 9.75e-72 | 220 |
| MS.gene77020.t1 | MTR_7g072270 | 61.379 | 145 | 51 | 2 | 15 | 155 | 22 | 165 | 1.30e-60 | 189 |
| MS.gene77020.t1 | MTR_7g071710 | 66.087 | 115 | 39 | 0 | 83 | 197 | 2 | 116 | 1.12e-55 | 174 |
| MS.gene77020.t1 | MTR_1g014180 | 43.386 | 189 | 92 | 6 | 13 | 192 | 3 | 185 | 5.42e-40 | 137 |
| MS.gene77020.t1 | MTR_1g014150 | 39.674 | 184 | 98 | 6 | 15 | 192 | 13 | 189 | 2.09e-32 | 117 |
| MS.gene77020.t1 | MTR_2g103840 | 32.749 | 171 | 98 | 7 | 39 | 199 | 43 | 206 | 5.31e-22 | 91.3 |
| MS.gene77020.t1 | MTR_1g014160 | 34.848 | 198 | 98 | 9 | 17 | 192 | 52 | 240 | 2.89e-19 | 84.3 |
| MS.gene77020.t1 | MTR_2g103850 | 30.769 | 169 | 104 | 6 | 39 | 199 | 44 | 207 | 4.17e-18 | 80.9 |
| MS.gene77020.t1 | MTR_4g010180 | 26.396 | 197 | 131 | 7 | 10 | 197 | 2 | 193 | 7.68e-18 | 79.7 |
| MS.gene77020.t1 | MTR_5g074550 | 31.159 | 138 | 86 | 4 | 57 | 191 | 60 | 191 | 1.41e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77020.t1 | AT5G01750 | 54.271 | 199 | 83 | 4 | 6 | 197 | 16 | 213 | 3.28e-73 | 223 |
| MS.gene77020.t1 | AT3G11740 | 49.741 | 193 | 90 | 4 | 14 | 200 | 2 | 193 | 1.62e-62 | 194 |
| MS.gene77020.t1 | AT1G33840 | 49.730 | 185 | 87 | 3 | 15 | 194 | 27 | 210 | 5.61e-57 | 181 |
| MS.gene77020.t1 | AT2G14560 | 49.733 | 187 | 88 | 3 | 15 | 196 | 7 | 192 | 1.18e-56 | 180 |
| MS.gene77020.t1 | AT2G14560 | 49.733 | 187 | 88 | 3 | 15 | 196 | 67 | 252 | 9.88e-56 | 180 |
| MS.gene77020.t1 | AT5G01750 | 52.532 | 158 | 67 | 4 | 6 | 156 | 16 | 172 | 1.13e-51 | 166 |
| MS.gene77020.t1 | AT2G14560 | 51.351 | 148 | 66 | 3 | 15 | 157 | 7 | 153 | 6.56e-44 | 147 |
| MS.gene77020.t1 | AT2G14560 | 51.351 | 148 | 66 | 3 | 15 | 157 | 67 | 213 | 8.10e-43 | 145 |
| MS.gene77020.t1 | AT1G33840 | 47.973 | 148 | 71 | 3 | 15 | 157 | 27 | 173 | 5.99e-40 | 136 |
| MS.gene77020.t1 | AT3G16900 | 33.500 | 200 | 108 | 6 | 1 | 195 | 1 | 180 | 1.11e-33 | 120 |
| MS.gene77020.t1 | AT3G56180 | 26.633 | 199 | 137 | 4 | 2 | 193 | 5 | 201 | 2.51e-21 | 89.0 |
| MS.gene77020.t1 | AT3G15810 | 30.909 | 165 | 103 | 4 | 39 | 197 | 45 | 204 | 4.88e-21 | 88.6 |
| MS.gene77020.t1 | AT3G56180 | 26.131 | 199 | 136 | 5 | 2 | 193 | 5 | 199 | 3.43e-19 | 83.2 |
| MS.gene77020.t1 | AT1G80120 | 30.357 | 168 | 103 | 5 | 39 | 197 | 31 | 193 | 2.03e-15 | 73.2 |
| MS.gene77020.t1 | AT3G10986 | 24.737 | 190 | 131 | 6 | 15 | 193 | 4 | 192 | 5.22e-12 | 63.5 |
| MS.gene77020.t1 | AT2G38640 | 28.395 | 162 | 104 | 6 | 39 | 194 | 37 | 192 | 2.01e-11 | 62.0 |
Find 32 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTGTTGTTGCATGTAAT+AGG | 0.349513 | 4.3:+70345455 | None:intergenic |
| ACATGCAACAACAGGATATC+TGG | 0.351520 | 4.3:-70345449 | MS.gene77020:CDS |
| GGAAAGATAATCTCACGGTT+AGG | 0.384584 | 4.3:-70347279 | MS.gene77020:CDS |
| TCCTGTTGTTGCATGTAATA+GGG | 0.398078 | 4.3:+70345456 | None:intergenic |
| GTGTTCAAAGTGTTGCGTTT+GGG | 0.407302 | 4.3:-70347300 | MS.gene77020:CDS |
| CTTCTTTAGTATTACTAGCT+AGG | 0.413877 | 4.3:+70347561 | None:intergenic |
| CTGTTGACCTATCAATTGTA+AGG | 0.415763 | 4.3:-70347980 | MS.gene77020:CDS |
| AGTGTTCAAAGTGTTGCGTT+TGG | 0.433678 | 4.3:-70347301 | MS.gene77020:CDS |
| TGACATTCCTTACAATTGAT+AGG | 0.450507 | 4.3:+70347973 | None:intergenic |
| TGAAACAAGATGGAGACTTA+TGG | 0.454619 | 4.3:+70345421 | None:intergenic |
| GTAAGAGACTGTGATCATAA+AGG | 0.456930 | 4.3:+70347886 | None:intergenic |
| TGTGATCATAAAGGAATTTG+AGG | 0.464343 | 4.3:+70347895 | None:intergenic |
| TCCCTATTACATGCAACAAC+AGG | 0.466654 | 4.3:-70345457 | MS.gene77020:CDS |
| CGATCTTGTGTTGTTTATGC+TGG | 0.470752 | 4.3:-70347500 | MS.gene77020:CDS |
| GAAAGATAATCTCACGGTTA+GGG | 0.472008 | 4.3:-70347278 | MS.gene77020:CDS |
| CAATGACGGGACATGATAGA+TGG | 0.479331 | 4.3:-70347679 | MS.gene77020:CDS |
| TTGATTGTAGATGCATAAGA+AGG | 0.480843 | 4.3:-70347326 | MS.gene77020:intron |
| ATGAATGCATAGTCAATGTT+GGG | 0.488228 | 4.3:+70347250 | None:intergenic |
| AGCTGCTGCAGCAGTAGAAT+CGG | 0.492975 | 4.3:-70345507 | MS.gene77020:CDS |
| ATCTCATCACATTGTTGCCC+AGG | 0.500173 | 4.3:-70347474 | MS.gene77020:intron |
| GATGAATGCATAGTCAATGT+TGG | 0.514312 | 4.3:+70347249 | None:intergenic |
| AATTATGAGAGTGGTATCAT+TGG | 0.521876 | 4.3:-70348026 | MS.gene77020:CDS |
| TTTCTTATACAGGCAATGAC+GGG | 0.543853 | 4.3:-70347692 | MS.gene77020:intron |
| AGTCTCTTACTTGATGCAGC+TGG | 0.550594 | 4.3:-70347873 | MS.gene77020:CDS |
| ATTGATAGGTCAACAGAATG+AGG | 0.558385 | 4.3:+70347987 | None:intergenic |
| ACTCTCATAATTTGCTGCAG+AGG | 0.575251 | 4.3:+70348037 | None:intergenic |
| GAATGAGGAACACGATATTG+AGG | 0.585084 | 4.3:+70348002 | None:intergenic |
| TGTCATGACGCTGAGACGAA+AGG | 0.619407 | 4.3:-70347841 | MS.gene77020:intron |
| TCTGCAGCAAATTATGAGAG+TGG | 0.622628 | 4.3:-70348035 | MS.gene77020:CDS |
| TTTGATCTTTGTTTGAAACA+TGG | 0.637933 | 4.3:+70347595 | None:intergenic |
| GTTTGGGAAAGATAATCTCA+CGG | 0.663482 | 4.3:-70347284 | MS.gene77020:CDS |
| CATTGACTATGCATTCATCG+TGG | 0.756924 | 4.3:-70347245 | MS.gene77020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAATTGCATTATTAA+TGG | + | chr4.3:70346042-70346061 | None:intergenic | 10.0% |
| !!! | AGATTAGTATTTTATTTAAA+TGG | - | chr4.3:70345715-70345734 | MS.gene77020:intron | 10.0% |
| !! | TTAGTTGAATATAATTAAGT+TGG | - | chr4.3:70346494-70346513 | MS.gene77020:intron | 15.0% |
| !!! | TATTTTTAGGAAAAATAAGA+TGG | + | chr4.3:70347102-70347121 | None:intergenic | 15.0% |
| !! | AATCTTATTCAATAGATGTA+AGG | + | chr4.3:70347603-70347622 | None:intergenic | 20.0% |
| !! | CAAAATCAAAATTGTTAAGT+TGG | - | chr4.3:70346299-70346318 | MS.gene77020:intron | 20.0% |
| !! | TAAAAATATCACCAAATGAA+TGG | - | chr4.3:70347114-70347133 | MS.gene77020:intron | 20.0% |
| !!! | ATGGTAAAATTTTCTTATAC+AGG | - | chr4.3:70345734-70345753 | MS.gene77020:intron | 20.0% |
| !!! | ATTCATTTGGTGATATTTTT+AGG | + | chr4.3:70347115-70347134 | None:intergenic | 20.0% |
| ! | AGACTGTTTGATATAACTTA+TGG | + | chr4.3:70347523-70347542 | None:intergenic | 25.0% |
| ! | TATTGATCCCTTCATTTATT+TGG | - | chr4.3:70346818-70346837 | MS.gene77020:intron | 25.0% |
| ! | TGAAGAAAAAACATTCAGAA+AGG | + | chr4.3:70347191-70347210 | None:intergenic | 25.0% |
| ! | TGGTTAATGAGATTTAATCA+AGG | + | chr4.3:70346720-70346739 | None:intergenic | 25.0% |
| ! | TTGGAAGATAAACATTTACT+TGG | - | chr4.3:70346417-70346436 | MS.gene77020:intron | 25.0% |
| !! | AAATGACTGTCTTTTATGTT+AGG | + | chr4.3:70347746-70347765 | None:intergenic | 25.0% |
| !! | AATGACTGTCTTTTATGTTA+GGG | + | chr4.3:70347745-70347764 | None:intergenic | 25.0% |
| !! | AGAAGATACTAGTGATTTTA+AGG | - | chr4.3:70345893-70345912 | MS.gene77020:intron | 25.0% |
| !! | TTTGATCTTTGTTTGAAACA+TGG | + | chr4.3:70345844-70345863 | None:intergenic | 25.0% |
| !!! | AGTCATTTCGATATTTTTGT+TGG | - | chr4.3:70347758-70347777 | MS.gene77020:intron | 25.0% |
| !!! | TAGATGTTCTGAGTTATTTT+TGG | - | chr4.3:70347226-70347245 | MS.gene77020:CDS | 25.0% |
| !!! | TGTGTTTTTAGTGATCTTTT+TGG | + | chr4.3:70348041-70348060 | None:intergenic | 25.0% |
| !!! | TTTTAGGAAAAATAAGATGG+AGG | + | chr4.3:70347099-70347118 | None:intergenic | 25.0% |
| AATACGTCGATGATGAATTA+AGG | + | chr4.3:70346765-70346784 | None:intergenic | 30.0% | |
| AATTATGAGAGTGGTATCAT+TGG | - | chr4.3:70345410-70345429 | MS.gene77020:CDS | 30.0% | |
| AGAACATCTAAGTAAATCAG+TGG | + | chr4.3:70347216-70347235 | None:intergenic | 30.0% | |
| ATACGTCGATGATGAATTAA+GGG | + | chr4.3:70346764-70346783 | None:intergenic | 30.0% | |
| ATGAATGCATAGTCAATGTT+GGG | + | chr4.3:70346189-70346208 | None:intergenic | 30.0% | |
| CTCTAAATTCATAATCTGGT+CGG | - | chr4.3:70346626-70346645 | MS.gene77020:intron | 30.0% | |
| CTTCTTTAGTATTACTAGCT+AGG | + | chr4.3:70345878-70345897 | None:intergenic | 30.0% | |
| GAAACATAAGACCATTCATT+TGG | + | chr4.3:70347128-70347147 | None:intergenic | 30.0% | |
| GACCAGATTATGAATTTAGA+GGG | + | chr4.3:70346627-70346646 | None:intergenic | 30.0% | |
| GTTTGTAAAGTATAGCTCAT+CGG | - | chr4.3:70346275-70346294 | MS.gene77020:intron | 30.0% | |
| TAGCTCTCCAAATAAATGAA+GGG | + | chr4.3:70346828-70346847 | None:intergenic | 30.0% | |
| TGACATTCCTTACAATTGAT+AGG | + | chr4.3:70345466-70345485 | None:intergenic | 30.0% | |
| TGGATTATCTTACAAGTTGT+TGG | - | chr4.3:70347246-70347265 | MS.gene77020:CDS | 30.0% | |
| TGTAAGGATATTTGCATGTT+TGG | + | chr4.3:70347587-70347606 | None:intergenic | 30.0% | |
| TGTGATCATAAAGGAATTTG+AGG | + | chr4.3:70345544-70345563 | None:intergenic | 30.0% | |
| TTCCCTCTAAATTCATAATC+TGG | - | chr4.3:70346622-70346641 | MS.gene77020:intron | 30.0% | |
| TTGATTGTAGATGCATAAGA+AGG | - | chr4.3:70346110-70346129 | MS.gene77020:intron | 30.0% | |
| ! | AACTCTACTATAACTTGTGT+TGG | - | chr4.3:70347330-70347349 | MS.gene77020:intron | 30.0% |
| ! | AAGCTCTTTTGGATAACTTA+TGG | + | chr4.3:70347454-70347473 | None:intergenic | 30.0% |
| ! | ACTCTACTATAACTTGTGTT+GGG | - | chr4.3:70347331-70347350 | MS.gene77020:intron | 30.0% |
| ! | CTTATTCTCATAAGCTCTTT+TGG | + | chr4.3:70347465-70347484 | None:intergenic | 30.0% |
| ! | TACTTTATGTGTGAGTTTTC+AGG | - | chr4.3:70346365-70346384 | MS.gene77020:intron | 30.0% |
| ! | TTCACAGTCACAGATTTTAA+TGG | - | chr4.3:70345503-70345522 | MS.gene77020:CDS | 30.0% |
| ! | TTTTCTTATACAGGCAATGA+CGG | - | chr4.3:70345743-70345762 | MS.gene77020:intron | 30.0% |
| !! | ATCTTTTTGGTGAAACAAGA+TGG | + | chr4.3:70348028-70348047 | None:intergenic | 30.0% |
| !! | GTTGATAATGTTGCTGTTAT+AGG | + | chr4.3:70347887-70347906 | None:intergenic | 30.0% |
| !!! | ACTAGTGATTTTAAGGTCAA+AGG | - | chr4.3:70345900-70345919 | MS.gene77020:intron | 30.0% |
| !!! | ATTTTAAGGTCAAAGGAAGT+TGG | - | chr4.3:70345907-70345926 | MS.gene77020:intron | 30.0% |
| !!! | GAGCGGACTTTTTTTAATTA+AGG | + | chr4.3:70346962-70346981 | None:intergenic | 30.0% |
| ACTTGGAGAGCTATTTAGTT+AGG | - | chr4.3:70346434-70346453 | MS.gene77020:intron | 35.0% | |
| AGCTTCTGTCTCTGTTAAAT+AGG | + | chr4.3:70347913-70347932 | None:intergenic | 35.0% | |
| ATACTTCGTGATTACTCACT+CGG | - | chr4.3:70346324-70346343 | MS.gene77020:intron | 35.0% | |
| ATCCTGTTGTTGCATGTAAT+AGG | + | chr4.3:70347984-70348003 | None:intergenic | 35.0% | |
| ATTGATAGGTCAACAGAATG+AGG | + | chr4.3:70345452-70345471 | None:intergenic | 35.0% | |
| CGACCAGATTATGAATTTAG+AGG | + | chr4.3:70346628-70346647 | None:intergenic | 35.0% | |
| CTGTTGACCTATCAATTGTA+AGG | - | chr4.3:70345456-70345475 | MS.gene77020:CDS | 35.0% | |
| GAAAGATAATCTCACGGTTA+GGG | - | chr4.3:70346158-70346177 | MS.gene77020:intron | 35.0% | |
| GAATGCATGTTTCATTCAAG+TGG | + | chr4.3:70346740-70346759 | None:intergenic | 35.0% | |
| GATGAATGCATAGTCAATGT+TGG | + | chr4.3:70346190-70346209 | None:intergenic | 35.0% | |
| GTAAGAGACTGTGATCATAA+AGG | + | chr4.3:70345553-70345572 | None:intergenic | 35.0% | |
| GTTTGGGAAAGATAATCTCA+CGG | - | chr4.3:70346152-70346171 | MS.gene77020:intron | 35.0% | |
| TACTGAAAGTCAGAGATAGT+CGG | + | chr4.3:70346527-70346546 | None:intergenic | 35.0% | |
| TATAGAAAGAGTCCTTACCT+GGG | + | chr4.3:70345982-70346001 | None:intergenic | 35.0% | |
| TCAAACGGTAGAAGAAGAAA+TGG | + | chr4.3:70347809-70347828 | None:intergenic | 35.0% | |
| TCCTGTTGTTGCATGTAATA+GGG | + | chr4.3:70347983-70348002 | None:intergenic | 35.0% | |
| TGAAACAAGATGGAGACTTA+TGG | + | chr4.3:70348018-70348037 | None:intergenic | 35.0% | |
| TTCTTCTACCGTTTGATGAA+GGG | - | chr4.3:70347813-70347832 | MS.gene77020:intron | 35.0% | |
| TTTCTTATACAGGCAATGAC+GGG | - | chr4.3:70345744-70345763 | MS.gene77020:intron | 35.0% | |
| ! | ATAACTTGTGTTGGGGAAAT+GGG | - | chr4.3:70347339-70347358 | MS.gene77020:intron | 35.0% |
| ! | ATCAAGGTCGAATCAGTTTT+TGG | + | chr4.3:70346704-70346723 | None:intergenic | 35.0% |
| ! | CTAGCTCTCCAAATAAATGA+AGG | + | chr4.3:70346829-70346848 | None:intergenic | 35.0% |
| ! | CTCTACTATAACTTGTGTTG+GGG | - | chr4.3:70347332-70347351 | MS.gene77020:intron | 35.0% |
| ! | TATAACTTGTGTTGGGGAAA+TGG | - | chr4.3:70347338-70347357 | MS.gene77020:intron | 35.0% |
| ! | TCAAGGTCGAATCAGTTTTT+GGG | + | chr4.3:70346703-70346722 | None:intergenic | 35.0% |
| !! | ATGGAATGTAAGGAGTATCT+TGG | - | chr4.3:70347362-70347381 | MS.gene77020:intron | 35.0% |
| !!! | AAGGAGTATCTTGGTTCTTT+TGG | - | chr4.3:70347371-70347390 | MS.gene77020:intron | 35.0% |
| ACATGCAACAACAGGATATC+TGG | - | chr4.3:70347987-70348006 | MS.gene77020:CDS | 40.0% | |
| AGCTTGAACGACTTACTTCT+CGG | - | chr4.3:70346394-70346413 | MS.gene77020:intron | 40.0% | |
| CTATAGAAAGAGTCCTTACC+TGG | + | chr4.3:70345983-70346002 | None:intergenic | 40.0% | |
| CTCAACTCAAACGAAGTCTA+AGG | - | chr4.3:70347005-70347024 | MS.gene77020:intron | 40.0% | |
| CTCGTGTTTCCATTTCTTGT+GGG | + | chr4.3:70347283-70347302 | None:intergenic | 40.0% | |
| CTGTTAGACCCTTCATCAAA+CGG | + | chr4.3:70347824-70347843 | None:intergenic | 40.0% | |
| CTTCTTCTACCGTTTGATGA+AGG | - | chr4.3:70347812-70347831 | MS.gene77020:intron | 40.0% | |
| GAAACACGAGAAAGTAAAGC+AGG | - | chr4.3:70347293-70347312 | MS.gene77020:CDS | 40.0% | |
| GAATGAGGAACACGATATTG+AGG | + | chr4.3:70345437-70345456 | None:intergenic | 40.0% | |
| GGAAAGATAATCTCACGGTT+AGG | - | chr4.3:70346157-70346176 | MS.gene77020:intron | 40.0% | |
| TACTTCGTGATTACTCACTC+GGG | - | chr4.3:70346325-70346344 | MS.gene77020:intron | 40.0% | |
| TCCCTATTACATGCAACAAC+AGG | - | chr4.3:70347979-70347998 | MS.gene77020:CDS | 40.0% | |
| TCTCGTGTTTCCATTTCTTG+TGG | + | chr4.3:70347284-70347303 | None:intergenic | 40.0% | |
| TCTGCAGCAAATTATGAGAG+TGG | - | chr4.3:70345401-70345420 | MS.gene77020:CDS | 40.0% | |
| TGTTTCCATTTCTTGTGGGT+TGG | + | chr4.3:70347279-70347298 | None:intergenic | 40.0% | |
| ! | CATTGACTATGCATTCATCG+TGG | - | chr4.3:70346191-70346210 | MS.gene77020:intron | 40.0% |
| ! | GTTGTTGTCGTGTTTTGTCT+TGG | + | chr4.3:70346245-70346264 | None:intergenic | 40.0% |
| !! | ACTCTCATAATTTGCTGCAG+AGG | + | chr4.3:70345402-70345421 | None:intergenic | 40.0% |
| !! | AGCTTTTCGAGGTGAAAGTA+CGG | - | chr4.3:70345782-70345801 | MS.gene77020:intron | 40.0% |
| !! | AGTCTAAGGAAAGTACCCAT+TGG | - | chr4.3:70347019-70347038 | MS.gene77020:intron | 40.0% |
| !! | AGTGTTCAAAGTGTTGCGTT+TGG | - | chr4.3:70346135-70346154 | MS.gene77020:intron | 40.0% |
| !! | AGTTGAGTTGAGTTCTCGTT+GGG | + | chr4.3:70346992-70347011 | None:intergenic | 40.0% |
| !! | CGATCTTGTGTTGTTTATGC+TGG | - | chr4.3:70345936-70345955 | MS.gene77020:intron | 40.0% |
| !! | GTCTAAGGAAAGTACCCATT+GGG | - | chr4.3:70347020-70347039 | MS.gene77020:intron | 40.0% |
| !! | GTGTTCAAAGTGTTGCGTTT+GGG | - | chr4.3:70346136-70346155 | MS.gene77020:intron | 40.0% |
| AGGCTCAGAAATTCAGACGA+CGG | + | chr4.3:70347867-70347886 | None:intergenic | 45.0% | |
| AGTCTCTTACTTGATGCAGC+TGG | - | chr4.3:70345563-70345582 | MS.gene77020:intron | 45.0% | |
| ATCACATTGTTGCCCAGGTA+AGG | - | chr4.3:70345967-70345986 | MS.gene77020:intron | 45.0% | |
| ATCTCATCACATTGTTGCCC+AGG | - | chr4.3:70345962-70345981 | MS.gene77020:intron | 45.0% | |
| ATGTGCCAACCCACAAGAAA+TGG | - | chr4.3:70347271-70347290 | MS.gene77020:CDS | 45.0% | |
| GGGAAATGGGATGGAATGTA+AGG | - | chr4.3:70347352-70347371 | MS.gene77020:intron | 45.0% | |
| TGAACGACTTACTTCTCGGT+TGG | - | chr4.3:70346398-70346417 | MS.gene77020:intron | 45.0% | |
| ! | CAATGACGGGACATGATAGA+TGG | - | chr4.3:70345757-70345776 | MS.gene77020:intron | 45.0% |
| ! | GATAGATGGCAAGCTTTTCG+AGG | - | chr4.3:70345771-70345790 | MS.gene77020:intron | 45.0% |
| !! | AAGGAAAGTACCCATTGGGT+GGG | - | chr4.3:70347024-70347043 | MS.gene77020:intron | 45.0% |
| !! | ATTTCTTGTGGGTTGGCACA+TGG | + | chr4.3:70347272-70347291 | None:intergenic | 45.0% |
| !! | GAGTTGAGTTGAGTTCTCGT+TGG | + | chr4.3:70346993-70347012 | None:intergenic | 45.0% |
| !! | TAAGGAAAGTACCCATTGGG+TGG | - | chr4.3:70347023-70347042 | MS.gene77020:intron | 45.0% |
| !! | TTTTCGAGGTGAAAGTACGG+AGG | - | chr4.3:70345785-70345804 | MS.gene77020:intron | 45.0% |
| AGCTGCTGCAGCAGTAGAAT+CGG | - | chr4.3:70347929-70347948 | MS.gene77020:CDS | 50.0% | |
| CTTGATGCTACCCACCCAAT+GGG | + | chr4.3:70347037-70347056 | None:intergenic | 50.0% | |
| CTTGTGTTGGGGAAATGGGA+TGG | - | chr4.3:70347343-70347362 | MS.gene77020:intron | 50.0% | |
| TGTCATGACGCTGAGACGAA+AGG | - | chr4.3:70345595-70345614 | MS.gene77020:intron | 50.0% | |
| GCTTGATGCTACCCACCCAA+TGG | + | chr4.3:70347038-70347057 | None:intergenic | 55.0% | |
| TCTCGTTGGGCGAGAAAGAG+CGG | + | chr4.3:70346979-70346998 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 70345383 | 70348075 | 70345383 | ID=MS.gene77020 |
| chr4.3 | mRNA | 70345383 | 70348075 | 70345383 | ID=MS.gene77020.t1;Parent=MS.gene77020 |
| chr4.3 | exon | 70347842 | 70348075 | 70347842 | ID=MS.gene77020.t1.exon1;Parent=MS.gene77020.t1 |
| chr4.3 | CDS | 70347842 | 70348075 | 70347842 | ID=cds.MS.gene77020.t1;Parent=MS.gene77020.t1 |
| chr4.3 | exon | 70347475 | 70347702 | 70347475 | ID=MS.gene77020.t1.exon2;Parent=MS.gene77020.t1 |
| chr4.3 | CDS | 70347475 | 70347702 | 70347475 | ID=cds.MS.gene77020.t1;Parent=MS.gene77020.t1 |
| chr4.3 | exon | 70347193 | 70347338 | 70347193 | ID=MS.gene77020.t1.exon3;Parent=MS.gene77020.t1 |
| chr4.3 | CDS | 70347193 | 70347338 | 70347193 | ID=cds.MS.gene77020.t1;Parent=MS.gene77020.t1 |
| chr4.3 | exon | 70345383 | 70345536 | 70345383 | ID=MS.gene77020.t1.exon4;Parent=MS.gene77020.t1 |
| chr4.3 | CDS | 70345383 | 70345536 | 70345383 | ID=cds.MS.gene77020.t1;Parent=MS.gene77020.t1 |
| Gene Sequence |
| Protein sequence |
