Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77500.t1 | XP_024633668.1 | 88.6 | 185 | 19 | 1 | 1 | 183 | 1 | 185 | 3.90E-71 | 277.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77500.t1 | O64864 | 44.1 | 118 | 64 | 1 | 7 | 122 | 12 | 129 | 3.2e-26 | 119.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77500.t1 | A0A396IUN5 | 88.6 | 185 | 19 | 1 | 1 | 183 | 1 | 185 | 2.8e-71 | 277.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049298 | MS.gene77500 | 0.828786 | 7.41E-55 | -1.69E-46 |
| MS.gene050875 | MS.gene77500 | 0.803722 | 3.04E-49 | -1.69E-46 |
| MS.gene052169 | MS.gene77500 | 0.800804 | 1.21E-48 | -1.69E-46 |
| MS.gene052209 | MS.gene77500 | 0.813079 | 3.07E-51 | -1.69E-46 |
| MS.gene054662 | MS.gene77500 | 0.807167 | 5.77E-50 | -1.69E-46 |
| MS.gene054941 | MS.gene77500 | 0.819257 | 1.28E-52 | -1.69E-46 |
| MS.gene05652 | MS.gene77500 | 0.809808 | 1.58E-50 | -1.69E-46 |
| MS.gene057669 | MS.gene77500 | 0.843067 | 1.76E-58 | -1.69E-46 |
| MS.gene058853 | MS.gene77500 | 0.801616 | 8.28E-49 | -1.69E-46 |
| MS.gene05926 | MS.gene77500 | 0.830434 | 2.94E-55 | -1.69E-46 |
| MS.gene05960 | MS.gene77500 | 0.802092 | 6.61E-49 | -1.69E-46 |
| MS.gene059616 | MS.gene77500 | 0.818062 | 2.38E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene016280 | MS.gene77500 | PPI |
| MS.gene067247 | MS.gene77500 | PPI |
| MS.gene066915 | MS.gene77500 | PPI |
| MS.gene59892 | MS.gene77500 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77500.t1 | MTR_3g083760 | 82.673 | 202 | 16 | 1 | 1 | 183 | 1 | 202 | 1.18e-94 | 273 |
| MS.gene77500.t1 | MTR_3g083760 | 87.413 | 143 | 16 | 1 | 1 | 141 | 1 | 143 | 6.48e-81 | 236 |
| MS.gene77500.t1 | MTR_8g085560 | 50.829 | 181 | 83 | 3 | 9 | 183 | 14 | 194 | 5.45e-66 | 201 |
| MS.gene77500.t1 | MTR_7g014880 | 42.222 | 180 | 93 | 3 | 8 | 176 | 12 | 191 | 3.99e-41 | 137 |
| MS.gene77500.t1 | MTR_8g446830 | 39.487 | 195 | 105 | 6 | 1 | 182 | 1 | 195 | 1.05e-36 | 126 |
| MS.gene77500.t1 | MTR_1g103450 | 31.333 | 150 | 79 | 4 | 12 | 161 | 15 | 140 | 7.10e-13 | 63.5 |
| MS.gene77500.t1 | MTR_1g103490 | 36.667 | 90 | 55 | 2 | 12 | 101 | 10 | 97 | 2.34e-12 | 62.0 |
| MS.gene77500.t1 | MTR_1g103470 | 39.189 | 74 | 42 | 2 | 28 | 101 | 25 | 95 | 1.66e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77500.t1 | AT1G55260 | 43.258 | 178 | 93 | 4 | 8 | 181 | 53 | 226 | 6.91e-44 | 145 |
| MS.gene77500.t1 | AT1G55260 | 43.258 | 178 | 90 | 5 | 8 | 181 | 53 | 223 | 2.21e-43 | 144 |
| MS.gene77500.t1 | AT2G44300 | 39.796 | 196 | 96 | 5 | 7 | 183 | 11 | 203 | 1.38e-40 | 136 |
| MS.gene77500.t1 | AT2G44290 | 38.579 | 197 | 96 | 4 | 9 | 183 | 11 | 204 | 1.60e-40 | 136 |
| MS.gene77500.t1 | AT3G58550 | 38.926 | 149 | 84 | 4 | 4 | 145 | 9 | 157 | 6.51e-30 | 108 |
| MS.gene77500.t1 | AT1G03103 | 31.915 | 94 | 64 | 0 | 8 | 101 | 2 | 95 | 1.91e-14 | 68.2 |
| MS.gene77500.t1 | AT5G09370 | 37.736 | 106 | 61 | 2 | 24 | 127 | 21 | 123 | 3.16e-14 | 66.6 |
| MS.gene77500.t1 | AT5G09370 | 37.600 | 125 | 64 | 5 | 24 | 138 | 21 | 141 | 3.74e-14 | 67.0 |
| MS.gene77500.t1 | AT2G48130 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.19e-14 | 67.4 |
| MS.gene77500.t1 | AT2G48130 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.19e-14 | 67.4 |
| MS.gene77500.t1 | AT2G48130 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.19e-14 | 67.4 |
| MS.gene77500.t1 | AT2G48130 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.19e-14 | 67.4 |
| MS.gene77500.t1 | AT2G48130 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.19e-14 | 67.4 |
| MS.gene77500.t1 | AT2G48130 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.19e-14 | 67.4 |
| MS.gene77500.t1 | AT5G09370 | 39.175 | 97 | 54 | 2 | 24 | 118 | 21 | 114 | 6.05e-14 | 66.6 |
| MS.gene77500.t1 | AT1G73890 | 39.189 | 74 | 45 | 0 | 31 | 104 | 30 | 103 | 7.41e-14 | 67.0 |
| MS.gene77500.t1 | AT3G22600 | 28.188 | 149 | 95 | 5 | 10 | 150 | 6 | 150 | 2.51e-12 | 62.4 |
| MS.gene77500.t1 | AT4G14815 | 30.000 | 90 | 62 | 1 | 12 | 101 | 7 | 95 | 4.42e-11 | 58.9 |
Find 51 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATAATTACCGCTGGAAAT+AGG | 0.158824 | 3.2:+72315055 | None:intergenic |
| TCTTATCAAGGACTTGTTTA+AGG | 0.173161 | 3.2:+72315751 | None:intergenic |
| ACCTTAGCTTCAGGGGATTT+AGG | 0.238114 | 3.2:+72315121 | None:intergenic |
| AATAATTACCGCTGGAAATA+GGG | 0.274317 | 3.2:+72315056 | None:intergenic |
| AAGGAGGTGGCTGGTGGCAG+AGG | 0.280788 | 3.2:-72314896 | MS.gene77500:CDS |
| ATTCAACTTGATACCAAGTT+TGG | 0.282616 | 3.2:+72315686 | None:intergenic |
| GATAAACTTGTTACTCTTGC+TGG | 0.316761 | 3.2:-72315831 | MS.gene77500:CDS |
| CCTTCAAACACCTTAGCTTC+AGG | 0.355634 | 3.2:+72315112 | None:intergenic |
| TTCAACTTGATACCAAGTTT+GGG | 0.358716 | 3.2:+72315687 | None:intergenic |
| ACACATTCAGTTATATTAGA+TGG | 0.359046 | 3.2:+72315624 | None:intergenic |
| TGGATTGGGAAGGAGGTGGC+TGG | 0.375917 | 3.2:-72314905 | MS.gene77500:CDS |
| AGGGGAGGAACTGTTTGTTT+TGG | 0.377595 | 3.2:+72315075 | None:intergenic |
| GAAAAGAGTGGTGGTGGATT+GGG | 0.380896 | 3.2:-72314919 | MS.gene77500:CDS |
| TGCATTATTATTTCTACTGT+TGG | 0.388007 | 3.2:-72315901 | MS.gene77500:CDS |
| TTATTATTTCTACTGTTGGC+TGG | 0.403176 | 3.2:-72315897 | MS.gene77500:CDS |
| CTTATCAAGGACTTGTTTAA+GGG | 0.407090 | 3.2:+72315752 | None:intergenic |
| GATGGTATGTGACAAGCGTT+TGG | 0.413443 | 3.2:+72315642 | None:intergenic |
| GGAAAAGAGTGGTGGTGGAT+TGG | 0.435272 | 3.2:-72314920 | MS.gene77500:CDS |
| GCTAAGGTGTTTGAAGGACT+TGG | 0.437073 | 3.2:-72315106 | MS.gene77500:CDS |
| GAGGTGGCTGGTGGCAGAGG+TGG | 0.447551 | 3.2:-72314893 | MS.gene77500:CDS |
| AAGTGAGATATGAAAAGAAA+TGG | 0.450601 | 3.2:+72314856 | None:intergenic |
| GGAAGTACAACAATCTATAG+TGG | 0.456166 | 3.2:+72315773 | None:intergenic |
| CTTCAAACACCTTAGCTTCA+GGG | 0.472455 | 3.2:+72315113 | None:intergenic |
| ACCTAAATCCCCTGAAGCTA+AGG | 0.474094 | 3.2:-72315122 | MS.gene77500:CDS |
| CCTGAAGCTAAGGTGTTTGA+AGG | 0.476875 | 3.2:-72315112 | MS.gene77500:CDS |
| GATCGCAATGACCCCAAACT+TGG | 0.492547 | 3.2:-72315699 | MS.gene77500:CDS |
| GTGGTGGATTGGGAAGGAGG+TGG | 0.495091 | 3.2:-72314909 | MS.gene77500:CDS |
| GTGGTGGTGGATTGGGAAGG+AGG | 0.496077 | 3.2:-72314912 | MS.gene77500:CDS |
| TCTGAGGAAAAGAGTGGTGG+TGG | 0.499326 | 3.2:-72314925 | MS.gene77500:CDS |
| TGTTTAAGGTTCTGCTGAGA+GGG | 0.503753 | 3.2:-72314962 | MS.gene77500:intron |
| GAAGTACAACAATCTATAGT+GGG | 0.507467 | 3.2:+72315774 | None:intergenic |
| ATTGGGAAGGAGGTGGCTGG+TGG | 0.530641 | 3.2:-72314902 | MS.gene77500:CDS |
| TCAAACTTGAACTTCAAGCT+AGG | 0.546383 | 3.2:+72314827 | None:intergenic |
| TTCAAACACCTTAGCTTCAG+GGG | 0.554009 | 3.2:+72315114 | None:intergenic |
| ATAATTACCGCTGGAAATAG+GGG | 0.565206 | 3.2:+72315057 | None:intergenic |
| GGTTGTCTTCCATACGTTGG+TGG | 0.578596 | 3.2:-72315810 | MS.gene77500:CDS |
| GCTGGTTGTCTTCCATACGT+TGG | 0.583066 | 3.2:-72315813 | MS.gene77500:CDS |
| TTGGCACTACCACCAACGTA+TGG | 0.586024 | 3.2:+72315801 | None:intergenic |
| TGGAAGCTGTACAGCAAGAG+TGG | 0.593369 | 3.2:+72315662 | None:intergenic |
| TCAACTTGATACCAAGTTTG+GGG | 0.608436 | 3.2:+72315688 | None:intergenic |
| ATGTTTAAGGTTCTGCTGAG+AGG | 0.614875 | 3.2:-72314963 | MS.gene77500:intron |
| AGAGTGGTGGTGGATTGGGA+AGG | 0.615185 | 3.2:-72314915 | MS.gene77500:CDS |
| GGGATCAAGCTCAAGTTCTG+AGG | 0.620498 | 3.2:-72314941 | MS.gene77500:CDS |
| GGTCATTGCGATCTTTGATG+AGG | 0.621163 | 3.2:+72315709 | None:intergenic |
| GTTTAAGGTTCTGCTGAGAG+GGG | 0.633464 | 3.2:-72314961 | MS.gene77500:intron |
| AAGTACAACAATCTATAGTG+GGG | 0.642782 | 3.2:+72315775 | None:intergenic |
| AGTTCCTCCCCTATTTCCAG+CGG | 0.660557 | 3.2:-72315064 | MS.gene77500:intron |
| ATTACCGCTGGAAATAGGGG+AGG | 0.669828 | 3.2:+72315060 | None:intergenic |
| TCAAGTTCTGAGGAAAAGAG+TGG | 0.677014 | 3.2:-72314931 | MS.gene77500:CDS |
| AGTACAACAATCTATAGTGG+GGG | 0.691483 | 3.2:+72315776 | None:intergenic |
| AGTTCTGAGGAAAAGAGTGG+TGG | 0.693229 | 3.2:-72314928 | MS.gene77500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATGAGAATTTTTTTTTGT+TGG | - | chr3.2:72315504-72315523 | MS.gene77500:intron | 15.0% |
| !! | AAAATTATAATAATTACCGC+TGG | + | chr3.2:72315722-72315741 | None:intergenic | 20.0% |
| !! | ATATAAATAAGGCTTAATCA+TGG | - | chr3.2:72315387-72315406 | MS.gene77500:intron | 20.0% |
| !!! | TAGTTTGCTTTATGTATTAA+GGG | - | chr3.2:72315208-72315227 | MS.gene77500:intron | 20.0% |
| !!! | TTAGTTTGCTTTATGTATTA+AGG | - | chr3.2:72315207-72315226 | MS.gene77500:intron | 20.0% |
| ! | AAGTGAGATATGAAAAGAAA+TGG | + | chr3.2:72315914-72315933 | None:intergenic | 25.0% |
| ! | ACACATTCAGTTATATTAGA+TGG | + | chr3.2:72315146-72315165 | None:intergenic | 25.0% |
| ! | AGAACCTTAAACATTATTAG+AGG | + | chr3.2:72315798-72315817 | None:intergenic | 25.0% |
| ! | ATAATCTTCAAAAGTAAGTG+AGG | - | chr3.2:72315418-72315437 | MS.gene77500:intron | 25.0% |
| ! | TCTAATATAACTGAATGTGT+AGG | - | chr3.2:72315146-72315165 | MS.gene77500:intron | 25.0% |
| !!! | CACTTACTTTTGAAGATTAT+TGG | + | chr3.2:72315418-72315437 | None:intergenic | 25.0% |
| !!! | GAGAATTTTTTTTTGTTGGT+CGG | - | chr3.2:72315508-72315527 | MS.gene77500:intron | 25.0% |
| !!! | TGCATTATTATTTCTACTGT+TGG | - | chr3.2:72314866-72314885 | MS.gene77500:CDS | 25.0% |
| AAGTACAACAATCTATAGTG+GGG | + | chr3.2:72314995-72315014 | None:intergenic | 30.0% | |
| AATAATTACCGCTGGAAATA+GGG | + | chr3.2:72315714-72315733 | None:intergenic | 30.0% | |
| ATTCAACTTGATACCAAGTT+TGG | + | chr3.2:72315084-72315103 | None:intergenic | 30.0% | |
| CATATGTATATAGTCCAATC+AGG | + | chr3.2:72315234-72315253 | None:intergenic | 30.0% | |
| GAAGTACAACAATCTATAGT+GGG | + | chr3.2:72314996-72315015 | None:intergenic | 30.0% | |
| TAATAATTACCGCTGGAAAT+AGG | + | chr3.2:72315715-72315734 | None:intergenic | 30.0% | |
| TGTGCCTCTAATAATGTTTA+AGG | - | chr3.2:72315791-72315810 | MS.gene77500:CDS | 30.0% | |
| TTCAACTTGATACCAAGTTT+GGG | + | chr3.2:72315083-72315102 | None:intergenic | 30.0% | |
| ! | CTTATCAAGGACTTGTTTAA+GGG | + | chr3.2:72315018-72315037 | None:intergenic | 30.0% |
| ! | TAATGCAGTTACACTTTTGT+TGG | + | chr3.2:72314853-72314872 | None:intergenic | 30.0% |
| ! | TCTTATCAAGGACTTGTTTA+AGG | + | chr3.2:72315019-72315038 | None:intergenic | 30.0% |
| !! | ACATTCCATTGAGTTGAATT+AGG | + | chr3.2:72315580-72315599 | None:intergenic | 30.0% |
| !! | ACTTTTGAAGATTATTGGAC+CGG | + | chr3.2:72315413-72315432 | None:intergenic | 30.0% |
| !! | TTATTATTTCTACTGTTGGC+TGG | - | chr3.2:72314870-72314889 | MS.gene77500:CDS | 30.0% |
| !!! | TGCATTTTTTGGTCTTATCA+AGG | + | chr3.2:72315031-72315050 | None:intergenic | 30.0% |
| AAATAAGGCTTAATCATGGC+CGG | - | chr3.2:72315391-72315410 | MS.gene77500:intron | 35.0% | |
| AATGTCTCATGTGACAAAAG+AGG | + | chr3.2:72315470-72315489 | None:intergenic | 35.0% | |
| AGTACAACAATCTATAGTGG+GGG | + | chr3.2:72314994-72315013 | None:intergenic | 35.0% | |
| ATAATTACCGCTGGAAATAG+GGG | + | chr3.2:72315713-72315732 | None:intergenic | 35.0% | |
| GAGGAGACATATATTGAACT+TGG | + | chr3.2:72315451-72315470 | None:intergenic | 35.0% | |
| TCAACTTGATACCAAGTTTG+GGG | + | chr3.2:72315082-72315101 | None:intergenic | 35.0% | |
| TTATGTATTAAGGGCCTGAT+TGG | - | chr3.2:72315217-72315236 | MS.gene77500:intron | 35.0% | |
| ! | GGAAGTACAACAATCTATAG+TGG | + | chr3.2:72314997-72315016 | None:intergenic | 35.0% |
| !! | GATAAACTTGTTACTCTTGC+TGG | - | chr3.2:72314936-72314955 | MS.gene77500:CDS | 35.0% |
| !!! | GAGGATACAGATGCATTTTT+TGG | + | chr3.2:72315042-72315061 | None:intergenic | 35.0% |
| CTTCAAACACCTTAGCTTCA+GGG | + | chr3.2:72315657-72315676 | None:intergenic | 40.0% | |
| GGTGACAAATGTAGAAGATC+TGG | + | chr3.2:72315628-72315647 | None:intergenic | 40.0% | |
| TTCAAACACCTTAGCTTCAG+GGG | + | chr3.2:72315656-72315675 | None:intergenic | 40.0% | |
| ! | ACAATCTATAGTGGGGGTAT+TGG | + | chr3.2:72314988-72315007 | None:intergenic | 40.0% |
| ! | ATGTTTAAGGTTCTGCTGAG+AGG | - | chr3.2:72315804-72315823 | MS.gene77500:CDS | 40.0% |
| ! | TGTTTAAGGTTCTGCTGAGA+GGG | - | chr3.2:72315805-72315824 | MS.gene77500:CDS | 40.0% |
| !! | ATTGAGTTGAATTAGGCACG+GGG | + | chr3.2:72315573-72315592 | None:intergenic | 40.0% |
| !! | CATTGAGTTGAATTAGGCAC+GGG | + | chr3.2:72315574-72315593 | None:intergenic | 40.0% |
| !! | CCATTGAGTTGAATTAGGCA+CGG | + | chr3.2:72315575-72315594 | None:intergenic | 40.0% |
| !! | TAGTAGCTTTACTTTTGCGC+CGG | - | chr3.2:72315547-72315566 | MS.gene77500:intron | 40.0% |
| !! | TCAAGTTCTGAGGAAAAGAG+TGG | - | chr3.2:72315836-72315855 | MS.gene77500:CDS | 40.0% |
| ACCTAAATCCCCTGAAGCTA+AGG | - | chr3.2:72315645-72315664 | MS.gene77500:CDS | 45.0% | |
| ACCTTAGCTTCAGGGGATTT+AGG | + | chr3.2:72315649-72315668 | None:intergenic | 45.0% | |
| CCGTGCCTAATTCAACTCAA+TGG | - | chr3.2:72315572-72315591 | MS.gene77500:intron | 45.0% | |
| CCTTCAAACACCTTAGCTTC+AGG | + | chr3.2:72315658-72315677 | None:intergenic | 45.0% | |
| GATGGTATGTGACAAGCGTT+TGG | + | chr3.2:72315128-72315147 | None:intergenic | 45.0% | |
| GGTCATTGCGATCTTTGATG+AGG | + | chr3.2:72315061-72315080 | None:intergenic | 45.0% | |
| ! | AGGGGAGGAACTGTTTGTTT+TGG | + | chr3.2:72315695-72315714 | None:intergenic | 45.0% |
| ! | CCTGAAGCTAAGGTGTTTGA+AGG | - | chr3.2:72315655-72315674 | MS.gene77500:CDS | 45.0% |
| ! | GCTAAGGTGTTTGAAGGACT+TGG | - | chr3.2:72315661-72315680 | MS.gene77500:CDS | 45.0% |
| ! | GTTTAAGGTTCTGCTGAGAG+GGG | - | chr3.2:72315806-72315825 | MS.gene77500:CDS | 45.0% |
| !! | AGTTCTGAGGAAAAGAGTGG+TGG | - | chr3.2:72315839-72315858 | MS.gene77500:CDS | 45.0% |
| !! | GAAAAGAGTGGTGGTGGATT+GGG | - | chr3.2:72315848-72315867 | MS.gene77500:CDS | 45.0% |
| !! | GCTACTAAAGCCGTCGTTTT+TGG | + | chr3.2:72315534-72315553 | None:intergenic | 45.0% |
| !! | TTAAAATGTTTATATAAATA+AGG | - | chr3.2:72315376-72315395 | MS.gene77500:intron | 5.0% |
| AGTTCCTCCCCTATTTCCAG+CGG | - | chr3.2:72315703-72315722 | MS.gene77500:CDS | 50.0% | |
| ATTACCGCTGGAAATAGGGG+AGG | + | chr3.2:72315710-72315729 | None:intergenic | 50.0% | |
| GATCGCAATGACCCCAAACT+TGG | - | chr3.2:72315068-72315087 | MS.gene77500:CDS | 50.0% | |
| GCTGGTTGTCTTCCATACGT+TGG | - | chr3.2:72314954-72314973 | MS.gene77500:CDS | 50.0% | |
| GGGATCAAGCTCAAGTTCTG+AGG | - | chr3.2:72315826-72315845 | MS.gene77500:CDS | 50.0% | |
| GGTTGTCTTCCATACGTTGG+TGG | - | chr3.2:72314957-72314976 | MS.gene77500:CDS | 50.0% | |
| TCTGAGGAAAAGAGTGGTGG+TGG | - | chr3.2:72315842-72315861 | MS.gene77500:CDS | 50.0% | |
| TGGAAGCTGTACAGCAAGAG+TGG | + | chr3.2:72315108-72315127 | None:intergenic | 50.0% | |
| TGTTGGTCGGCCAAAAACGA+CGG | - | chr3.2:72315521-72315540 | MS.gene77500:intron | 50.0% | |
| TTGGCACTACCACCAACGTA+TGG | + | chr3.2:72314969-72314988 | None:intergenic | 50.0% | |
| !! | GGAAAAGAGTGGTGGTGGAT+TGG | - | chr3.2:72315847-72315866 | MS.gene77500:CDS | 50.0% |
| AGTTGAATTAGGCACGGGGC+CGG | + | chr3.2:72315569-72315588 | None:intergenic | 55.0% | |
| !! | AGAGTGGTGGTGGATTGGGA+AGG | - | chr3.2:72315852-72315871 | MS.gene77500:CDS | 55.0% |
| ATTGGGAAGGAGGTGGCTGG+TGG | - | chr3.2:72315865-72315884 | MS.gene77500:CDS | 60.0% | |
| ! | TGGATTGGGAAGGAGGTGGC+TGG | - | chr3.2:72315862-72315881 | MS.gene77500:CDS | 60.0% |
| !! | GTGGTGGATTGGGAAGGAGG+TGG | - | chr3.2:72315858-72315877 | MS.gene77500:CDS | 60.0% |
| !! | GTGGTGGTGGATTGGGAAGG+AGG | - | chr3.2:72315855-72315874 | MS.gene77500:CDS | 60.0% |
| AAGGAGGTGGCTGGTGGCAG+AGG | - | chr3.2:72315871-72315890 | MS.gene77500:CDS | 65.0% | |
| GAGGTGGCTGGTGGCAGAGG+TGG | - | chr3.2:72315874-72315893 | MS.gene77500:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 72314840 | 72315949 | 72314840 | ID=MS.gene77500 |
| chr3.2 | mRNA | 72314840 | 72315949 | 72314840 | ID=MS.gene77500.t1;Parent=MS.gene77500 |
| chr3.2 | exon | 72315628 | 72315949 | 72315628 | ID=MS.gene77500.t1.exon1;Parent=MS.gene77500.t1 |
| chr3.2 | CDS | 72315628 | 72315949 | 72315628 | ID=cds.MS.gene77500.t1;Parent=MS.gene77500.t1 |
| chr3.2 | exon | 72315065 | 72315160 | 72315065 | ID=MS.gene77500.t1.exon2;Parent=MS.gene77500.t1 |
| chr3.2 | CDS | 72315065 | 72315160 | 72315065 | ID=cds.MS.gene77500.t1;Parent=MS.gene77500.t1 |
| chr3.2 | exon | 72314840 | 72314976 | 72314840 | ID=MS.gene77500.t1.exon3;Parent=MS.gene77500.t1 |
| chr3.2 | CDS | 72314840 | 72314976 | 72314840 | ID=cds.MS.gene77500.t1;Parent=MS.gene77500.t1 |
| Gene Sequence |
| Protein sequence |
