Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77827.t1 | XP_003618084.1 | 98.8 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 7.60E-87 | 329.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77827.t1 | Q0IIJ0 | 53.3 | 150 | 68 | 2 | 9 | 157 | 6 | 154 | 1.0e-39 | 164.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77827.t1 | G7K0Q8 | 98.8 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 5.5e-87 | 329.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene77827.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene63427 | MS.gene77827 | PPI |
| MS.gene95934 | MS.gene77827 | PPI |
| MS.gene51687 | MS.gene77827 | PPI |
| MS.gene009509 | MS.gene77827 | PPI |
| MS.gene77827 | MS.gene019081 | PPI |
| MS.gene51967 | MS.gene77827 | PPI |
| MS.gene51964 | MS.gene77827 | PPI |
| MS.gene92650 | MS.gene77827 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77827.t1 | MTR_5g098790 | 98.780 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 1.27e-120 | 337 |
| MS.gene77827.t1 | MTR_5g007400 | 27.632 | 152 | 87 | 3 | 14 | 142 | 17 | 168 | 6.38e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77827.t1 | AT5G11340 | 78.049 | 164 | 36 | 0 | 1 | 164 | 1 | 164 | 2.43e-97 | 278 |
| MS.gene77827.t1 | AT5G16800 | 23.926 | 163 | 101 | 3 | 4 | 143 | 20 | 182 | 2.10e-12 | 63.2 |
| MS.gene77827.t1 | AT5G16800 | 23.926 | 163 | 101 | 3 | 4 | 143 | 20 | 182 | 3.91e-12 | 62.8 |
| MS.gene77827.t1 | AT5G16800 | 23.926 | 163 | 101 | 3 | 4 | 143 | 20 | 182 | 5.72e-12 | 62.4 |
Find 31 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTCTTATAAAAGTTAA+TGG | 0.199299 | 5.1:+80093659 | None:intergenic |
| TGATGTTTACGTAATAGTTC+TGG | 0.333615 | 5.1:+80093613 | None:intergenic |
| CTGAAATGTTATTTCTTTGT+TGG | 0.338231 | 5.1:+80093546 | None:intergenic |
| CGGGTTTACATCATGACTTT+AGG | 0.340929 | 5.1:-80094062 | MS.gene77827:CDS |
| AGAAGGAAGGCGGGCAAGTT+CGG | 0.365269 | 5.1:-80094082 | MS.gene77827:CDS |
| GAAGGAAGGCGGGCAAGTTC+GGG | 0.367625 | 5.1:-80094081 | MS.gene77827:CDS |
| TGAAATGTTATTTCTTTGTT+GGG | 0.378604 | 5.1:+80093547 | None:intergenic |
| TATTTGTCGTTGTAACGAAC+AGG | 0.385879 | 5.1:+80096006 | None:intergenic |
| CCTTACCGTGGACTTGGTAT+TGG | 0.408366 | 5.1:-80094029 | MS.gene77827:intron |
| TGTTATTTCTTTGTTGGGCT+AGG | 0.418834 | 5.1:+80093552 | None:intergenic |
| TTAGCGCCTTACCGTGGACT+TGG | 0.429752 | 5.1:-80094035 | MS.gene77827:CDS |
| TGATAGAAAAGAACCTAGTT+TGG | 0.435318 | 5.1:+80095951 | None:intergenic |
| GAAGTATCAATATCATTAGA+TGG | 0.453181 | 5.1:-80096081 | MS.gene77827:CDS |
| CGCCTTCCTTCTTCTCAAGC+CGG | 0.465600 | 5.1:+80094093 | None:intergenic |
| TGCATGCCGGCTTGAGAAGA+AGG | 0.476399 | 5.1:-80094099 | MS.gene77827:CDS |
| TCCGCTGATTTCACCAAACT+AGG | 0.503020 | 5.1:-80095964 | MS.gene77827:intron |
| TACTACAGTGACATTTGTGT+TGG | 0.528723 | 5.1:-80094128 | MS.gene77827:CDS |
| CGCGAAGCAAAACATTTCTG+AGG | 0.547039 | 5.1:-80093715 | MS.gene77827:CDS |
| GGCTTGAGAAGAAGGAAGGC+GGG | 0.549023 | 5.1:-80094091 | MS.gene77827:CDS |
| GAAGTAGAATCAATGGGAGC+TGG | 0.565209 | 5.1:-80096108 | None:intergenic |
| TTTGGGTTTATGCAGGAACA+AGG | 0.566199 | 5.1:-80093764 | MS.gene77827:intron |
| GTGTTGGCGCAATTGCATGC+CGG | 0.568057 | 5.1:-80094112 | MS.gene77827:CDS |
| TGCCGGCTTGAGAAGAAGGA+AGG | 0.583442 | 5.1:-80094095 | MS.gene77827:CDS |
| CTTGTGACAACATAACAGTC+TGG | 0.600627 | 5.1:+80093585 | None:intergenic |
| CCAATACCAAGTCCACGGTA+AGG | 0.611714 | 5.1:+80094029 | None:intergenic |
| CGGCTTGAGAAGAAGGAAGG+CGG | 0.620221 | 5.1:-80094092 | MS.gene77827:CDS |
| ATTTGTCGTTGTAACGAACA+GGG | 0.627678 | 5.1:+80096007 | None:intergenic |
| TCTTACCAATACCAAGTCCA+CGG | 0.630487 | 5.1:+80094024 | None:intergenic |
| ACCTAGTTTGGTGAAATCAG+CGG | 0.645414 | 5.1:+80095963 | None:intergenic |
| CAGACTGTTATGTTGTCACA+AGG | 0.649227 | 5.1:-80093584 | MS.gene77827:CDS |
| GTGACAACATAACAGTCTGG+TGG | 0.757743 | 5.1:+80093588 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTCTTATAAAAGTTAA+TGG | + | chr5.1:80095994-80096013 | None:intergenic | 10.0% |
| !! | TAAATTAAAACACTTAAAAA+GGG | + | chr5.1:80095038-80095057 | None:intergenic | 10.0% |
| !! | TTAAATTAAAACACTTAAAA+AGG | + | chr5.1:80095039-80095058 | None:intergenic | 10.0% |
| !!! | ATTTTCATATATATAAGTTA+GGG | + | chr5.1:80095015-80095034 | None:intergenic | 10.0% |
| !! | AAGTATAATAATCAATCTTA+AGG | + | chr5.1:80095492-80095511 | None:intergenic | 15.0% |
| !! | ATTATTATAACAACAGAAAT+TGG | - | chr5.1:80094608-80094627 | MS.gene77827:intron | 15.0% |
| !! | TAAAAAAAAATCCTAAACAA+AGG | + | chr5.1:80094019-80094038 | None:intergenic | 15.0% |
| !!! | GATTTTCATATATATAAGTT+AGG | + | chr5.1:80095016-80095035 | None:intergenic | 15.0% |
| !!! | TTTTAAAATGAAAAGTTGTT+AGG | - | chr5.1:80094054-80094073 | MS.gene77827:CDS | 15.0% |
| !!! | TTTTCATATATATAAGTTAG+GGG | + | chr5.1:80095014-80095033 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTCTTTCAG+AGG | - | chr5.1:80094101-80094120 | MS.gene77827:CDS | 15.0% |
| !! | ACATACAACAACATTAATAA+AGG | + | chr5.1:80095452-80095471 | None:intergenic | 20.0% |
| !! | AGAAAGATTTCAAAACAAAA+AGG | + | chr5.1:80095190-80095209 | None:intergenic | 20.0% |
| !! | AGAAATTTGATATGAATCTT+TGG | - | chr5.1:80095868-80095887 | MS.gene77827:intron | 20.0% |
| !! | ATAATAATCAATCTTAAGGT+TGG | + | chr5.1:80095488-80095507 | None:intergenic | 20.0% |
| !! | CAAATTGAAACAAATCATTA+TGG | + | chr5.1:80093970-80093989 | None:intergenic | 20.0% |
| !! | GAAATTTGATATGAATCTTT+GGG | - | chr5.1:80095869-80095888 | MS.gene77827:intron | 20.0% |
| !! | GAGTTTCTATCTAATTATTT+AGG | - | chr5.1:80094967-80094986 | MS.gene77827:intron | 20.0% |
| !! | TTAAAACATAGTGTATTCAT+TGG | - | chr5.1:80094257-80094276 | MS.gene77827:intron | 20.0% |
| !! | TTTCATATATATAAGTTAGG+GGG | + | chr5.1:80095013-80095032 | None:intergenic | 20.0% |
| !!! | AACAGTTTTAGTGAAATTTT+AGG | - | chr5.1:80093990-80094009 | MS.gene77827:intron | 20.0% |
| !!! | ACAGTTTTAGTGAAATTTTA+GGG | - | chr5.1:80093991-80094010 | MS.gene77827:intron | 20.0% |
| !!! | AGAATATTAACCTTCTAAAA+TGG | + | chr5.1:80093908-80093927 | None:intergenic | 20.0% |
| !!! | CATGTATTTTATTTCATACT+AGG | - | chr5.1:80094387-80094406 | MS.gene77827:intron | 20.0% |
| !!! | TTTAAGTTTTAACAAGAACA+TGG | - | chr5.1:80095054-80095073 | MS.gene77827:intron | 20.0% |
| ! | AAAAATAAGCCAATCCAAAT+CGG | - | chr5.1:80093868-80093887 | MS.gene77827:intron | 25.0% |
| ! | TAGATAGCAAACTTAAAGAA+CGG | + | chr5.1:80095839-80095858 | None:intergenic | 25.0% |
| !! | GAAGTATCAATATCATTAGA+TGG | - | chr5.1:80093569-80093588 | MS.gene77827:CDS | 25.0% |
| !! | TTCAGTTTTTCATGATAACA+TGG | - | chr5.1:80095404-80095423 | MS.gene77827:intron | 25.0% |
| !! | TTCTGAAAAGACAGAAAAAA+GGG | + | chr5.1:80094222-80094241 | None:intergenic | 25.0% |
| !! | TTTTATGAGATGTGGATAAA+GGG | + | chr5.1:80095228-80095247 | None:intergenic | 25.0% |
| !! | TTTTTATGAGATGTGGATAA+AGG | + | chr5.1:80095229-80095248 | None:intergenic | 25.0% |
| !!! | CTGAAAGTTTTTAACTTAGT+TGG | - | chr5.1:80095325-80095344 | MS.gene77827:intron | 25.0% |
| !!! | TTTTTAACTTAGTTGGAACT+TGG | - | chr5.1:80095332-80095351 | MS.gene77827:intron | 25.0% |
| AAAGCACACATATATCAAAC+AGG | + | chr5.1:80095386-80095405 | None:intergenic | 30.0% | |
| AAAGCATGGAGTAAAATCTA+AGG | + | chr5.1:80094798-80094817 | None:intergenic | 30.0% | |
| AACAGAAATCGAATGCAAAA+AGG | + | chr5.1:80094917-80094936 | None:intergenic | 30.0% | |
| AAGAACATGGAATACATAGA+GGG | - | chr5.1:80095067-80095086 | MS.gene77827:intron | 30.0% | |
| AATATGTGTTTGTGGTACAA+GGG | + | chr5.1:80095742-80095761 | None:intergenic | 30.0% | |
| AGATAGCAAACTTAAAGAAC+GGG | + | chr5.1:80095838-80095857 | None:intergenic | 30.0% | |
| ATGAAGAAAAACAAACCCTT+GGG | - | chr5.1:80094708-80094727 | MS.gene77827:intron | 30.0% | |
| CATGATAACATGGATGATTT+AGG | - | chr5.1:80095414-80095433 | MS.gene77827:intron | 30.0% | |
| GATAAAGGGACATTAATCAT+AGG | + | chr5.1:80095214-80095233 | None:intergenic | 30.0% | |
| GATTCCAATAAAGATGACAA+CGG | + | chr5.1:80095256-80095275 | None:intergenic | 30.0% | |
| GTAGTGAAACTATATAGTCT+TGG | + | chr5.1:80095278-80095297 | None:intergenic | 30.0% | |
| TAGCTTAGAGTGTGAAATAA+TGG | + | chr5.1:80093725-80093744 | None:intergenic | 30.0% | |
| TGATAGAAAAGAACCTAGTT+TGG | + | chr5.1:80093702-80093721 | None:intergenic | 30.0% | |
| TGATGTTTACGTAATAGTTC+TGG | + | chr5.1:80096040-80096059 | None:intergenic | 30.0% | |
| TTTCATACTAGGATTAACGT+CGG | - | chr5.1:80094398-80094417 | MS.gene77827:intron | 30.0% | |
| ! | ACATATTGGAGACTTTTGTT+AGG | - | chr5.1:80095755-80095774 | MS.gene77827:intron | 30.0% |
| ! | ATAGTGTATTCATTGGCTAA+AGG | - | chr5.1:80094264-80094283 | MS.gene77827:intron | 30.0% |
| ! | CTTCTGAAAAGACAGAAAAA+AGG | + | chr5.1:80094223-80094242 | None:intergenic | 30.0% |
| ! | GAAAAATTGAAGGAGGATTT+TGG | + | chr5.1:80094658-80094677 | None:intergenic | 30.0% |
| ! | TTTTGCATTCGATTTCTGTT+GGG | - | chr5.1:80094917-80094936 | MS.gene77827:intron | 30.0% |
| ! | TTTTTGCATTCGATTTCTGT+TGG | - | chr5.1:80094916-80094935 | MS.gene77827:intron | 30.0% |
| !! | ACTCTAAGCTATTGCTTTTA+CGG | - | chr5.1:80093734-80093753 | MS.gene77827:CDS | 30.0% |
| !! | ATTAACCTTCTAAAATGGAC+AGG | + | chr5.1:80093903-80093922 | None:intergenic | 30.0% |
| !! | TTCTTTTGCTGCTTGATTTA+AGG | - | chr5.1:80095151-80095170 | MS.gene77827:intron | 30.0% |
| AAATACATGAGAGAGAAAGC+AGG | + | chr5.1:80094376-80094395 | None:intergenic | 35.0% | |
| AAGTCTCCAATATGTGTTTG+TGG | + | chr5.1:80095750-80095769 | None:intergenic | 35.0% | |
| ATACAAAATCCCCCCAATAT+GGG | + | chr5.1:80094687-80094706 | None:intergenic | 35.0% | |
| ATTTGTCGTTGTAACGAACA+GGG | + | chr5.1:80093646-80093665 | None:intergenic | 35.0% | |
| CAAGAACATGGAATACATAG+AGG | - | chr5.1:80095066-80095085 | MS.gene77827:intron | 35.0% | |
| CAATATGTGTTTGTGGTACA+AGG | + | chr5.1:80095743-80095762 | None:intergenic | 35.0% | |
| CAGTCATAGCAAATCCTTTA+AGG | - | chr5.1:80094496-80094515 | MS.gene77827:intron | 35.0% | |
| CATATATATAAGTTAGGGGG+AGG | + | chr5.1:80095010-80095029 | None:intergenic | 35.0% | |
| CATGAAGAAAAACAAACCCT+TGG | - | chr5.1:80094707-80094726 | MS.gene77827:intron | 35.0% | |
| CTAAAATGGACAGGAACTAA+GGG | + | chr5.1:80093894-80093913 | None:intergenic | 35.0% | |
| CTTGTACCACAAACACATAT+TGG | - | chr5.1:80095741-80095760 | MS.gene77827:intron | 35.0% | |
| GGAGTAGATGGAAAAAAAGA+GGG | - | chr5.1:80094546-80094565 | MS.gene77827:intron | 35.0% | |
| GTAGATGTGTTGAATGCTAA+TGG | - | chr5.1:80095109-80095128 | MS.gene77827:intron | 35.0% | |
| TACTACAGTGACATTTGTGT+TGG | - | chr5.1:80095522-80095541 | MS.gene77827:intron | 35.0% | |
| TATTTGTCGTTGTAACGAAC+AGG | + | chr5.1:80093647-80093666 | None:intergenic | 35.0% | |
| TGAAGAAAAACAAACCCTTG+GGG | - | chr5.1:80094709-80094728 | MS.gene77827:intron | 35.0% | |
| TGCTTATGCAAATACAGCTT+AGG | - | chr5.1:80093764-80093783 | MS.gene77827:intron | 35.0% | |
| TGTATAGAGGTTTCATTGGA+TGG | + | chr5.1:80094346-80094365 | None:intergenic | 35.0% | |
| TTAGGTGCAAGCATCAAATT+AGG | - | chr5.1:80095773-80095792 | MS.gene77827:intron | 35.0% | |
| TTTGCATTCGATTTCTGTTG+GGG | - | chr5.1:80094918-80094937 | MS.gene77827:intron | 35.0% | |
| ! | ATGAATCTTTGGGTTTATGC+AGG | - | chr5.1:80095879-80095898 | MS.gene77827:intron | 35.0% |
| ! | CTGCTATTTGATATCTTCCA+TGG | - | chr5.1:80094888-80094907 | MS.gene77827:intron | 35.0% |
| ! | TAGTTCCTGTCCATTTTAGA+AGG | - | chr5.1:80093895-80093914 | MS.gene77827:intron | 35.0% |
| ! | TCTAAAATGGACAGGAACTA+AGG | + | chr5.1:80093895-80093914 | None:intergenic | 35.0% |
| !! | ATTTTTCAGTTCCCCCATAT+TGG | - | chr5.1:80094671-80094690 | MS.gene77827:intron | 35.0% |
| !! | TTACTTTTAGCCAAGAGTAG+TGG | + | chr5.1:80094456-80094475 | None:intergenic | 35.0% |
| !! | TTTTGCTGCTTGATTTAAGG+AGG | - | chr5.1:80095154-80095173 | MS.gene77827:intron | 35.0% |
| !! | TTTTTCAGTTCCCCCATATT+GGG | - | chr5.1:80094672-80094691 | MS.gene77827:intron | 35.0% |
| !!! | ATTTTAGGGTGCCTTTGTTT+AGG | - | chr5.1:80094005-80094024 | MS.gene77827:intron | 35.0% |
| ATATATAAGTTAGGGGGAGG+CGG | + | chr5.1:80095007-80095026 | None:intergenic | 40.0% | |
| CAGACTGTTATGTTGTCACA+AGG | - | chr5.1:80096066-80096085 | MS.gene77827:CDS | 40.0% | |
| CAGAGGTAACACATGAACTT+TGG | - | chr5.1:80094118-80094137 | MS.gene77827:CDS | 40.0% | |
| CAGTCCGTTGTCATCTTTAT+TGG | - | chr5.1:80095249-80095268 | MS.gene77827:intron | 40.0% | |
| CGAATGCAAAAAGGATACCA+TGG | + | chr5.1:80094908-80094927 | None:intergenic | 40.0% | |
| CGGGTTTACATCATGACTTT+AGG | - | chr5.1:80095588-80095607 | MS.gene77827:intron | 40.0% | |
| CTTGTGACAACATAACAGTC+TGG | + | chr5.1:80096068-80096087 | None:intergenic | 40.0% | |
| GAAGAAAAACAAACCCTTGG+GGG | - | chr5.1:80094710-80094729 | MS.gene77827:intron | 40.0% | |
| GATACAAAATCCCCCCAATA+TGG | + | chr5.1:80094688-80094707 | None:intergenic | 40.0% | |
| GGCTAAAGGAAAATGCTTGT+TGG | - | chr5.1:80094278-80094297 | MS.gene77827:intron | 40.0% | |
| GGGAACTGAAAAATTGAAGG+AGG | + | chr5.1:80094665-80094684 | None:intergenic | 40.0% | |
| GGGAGTAGATGGAAAAAAAG+AGG | - | chr5.1:80094545-80094564 | MS.gene77827:intron | 40.0% | |
| GTGCTATATACCACTACTCT+TGG | - | chr5.1:80094443-80094462 | MS.gene77827:intron | 40.0% | |
| TAAGGCTATGTTTGCGAGTT+TGG | + | chr5.1:80094780-80094799 | None:intergenic | 40.0% | |
| TACAAAATCCCCCCAATATG+GGG | + | chr5.1:80094686-80094705 | None:intergenic | 40.0% | |
| TCGGTGTATAGAGGTTTCAT+TGG | + | chr5.1:80094350-80094369 | None:intergenic | 40.0% | |
| TCTTACCAATACCAAGTCCA+CGG | + | chr5.1:80095629-80095648 | None:intergenic | 40.0% | |
| TGAGAGAGAAAGCAGGAAAT+CGG | + | chr5.1:80094369-80094388 | None:intergenic | 40.0% | |
| TGGGGGAACTGAAAAATTGA+AGG | + | chr5.1:80094668-80094687 | None:intergenic | 40.0% | |
| ! | ACCTAGTTTGGTGAAATCAG+CGG | + | chr5.1:80093690-80093709 | None:intergenic | 40.0% |
| ! | CATGCTTTCGTTGCACTTTT+CGG | - | chr5.1:80094810-80094829 | MS.gene77827:intron | 40.0% |
| ! | CTGTGTTTTGCGAGTTTAGA+GGG | - | chr5.1:80094519-80094538 | MS.gene77827:intron | 40.0% |
| ! | GGGAAGTTCTCTCTTTTCTT+TGG | - | chr5.1:80095087-80095106 | MS.gene77827:intron | 40.0% |
| ! | TGTGTTTTGCGAGTTTAGAG+GGG | - | chr5.1:80094520-80094539 | MS.gene77827:intron | 40.0% |
| ! | TTTGGGTTTATGCAGGAACA+AGG | - | chr5.1:80095886-80095905 | MS.gene77827:intron | 40.0% |
| ! | TTTTCAGTTCCCCCATATTG+GGG | - | chr5.1:80094673-80094692 | MS.gene77827:intron | 40.0% |
| !! | ATAGCAGTTCTGAATTGCAC+AGG | + | chr5.1:80094875-80094894 | None:intergenic | 40.0% |
| !! | ATTTGCTATGACTGACTCCA+GGG | + | chr5.1:80094490-80094509 | None:intergenic | 40.0% |
| !! | TAGCAGTTCTGAATTGCACA+GGG | + | chr5.1:80094874-80094893 | None:intergenic | 40.0% |
| !!! | CGGACTGTTTTTATGAGATG+TGG | + | chr5.1:80095236-80095255 | None:intergenic | 40.0% |
| !!! | GAGGGTTTTGGGTAAAATGA+AGG | + | chr5.1:80094748-80094767 | None:intergenic | 40.0% |
| !!! | GGTTTTGGGTAAAATGAAGG+AGG | + | chr5.1:80094745-80094764 | None:intergenic | 40.0% |
| AAGTAAACCTGCTGAAACCC+TGG | - | chr5.1:80094470-80094489 | MS.gene77827:intron | 45.0% | |
| ACAAAATCCCCCCAATATGG+GGG | + | chr5.1:80094685-80094704 | None:intergenic | 45.0% | |
| AGCAGGAAATCGGTGTATAG+AGG | + | chr5.1:80094359-80094378 | None:intergenic | 45.0% | |
| CGCGAAGCAAAACATTTCTG+AGG | - | chr5.1:80095935-80095954 | MS.gene77827:intron | 45.0% | |
| CTATGTTTGCGAGTTTGGAG+GGG | + | chr5.1:80094775-80094794 | None:intergenic | 45.0% | |
| CTCGCAAAACACAGCCTTAA+AGG | + | chr5.1:80094513-80094532 | None:intergenic | 45.0% | |
| GCTATGTTTGCGAGTTTGGA+GGG | + | chr5.1:80094776-80094795 | None:intergenic | 45.0% | |
| GTGACAACATAACAGTCTGG+TGG | + | chr5.1:80096065-80096084 | None:intergenic | 45.0% | |
| TCGTTTACGTTCGCGTTTGT+CGG | + | chr5.1:80094312-80094331 | None:intergenic | 45.0% | |
| TGGGTAAAATGAAGGAGGCA+AGG | + | chr5.1:80094740-80094759 | None:intergenic | 45.0% | |
| TTTCAGTTCCCCCATATTGG+GGG | - | chr5.1:80094674-80094693 | MS.gene77827:intron | 45.0% | |
| ! | CGAAAAGTGCAACGAAAGCA+TGG | + | chr5.1:80094812-80094831 | None:intergenic | 45.0% |
| ! | GCTGTGTTTTGCGAGTTTAG+AGG | - | chr5.1:80094518-80094537 | MS.gene77827:intron | 45.0% |
| ! | TTTTGCGAGTTTAGAGGGGA+GGG | - | chr5.1:80094524-80094543 | MS.gene77827:intron | 45.0% |
| !! | AACTAAGGGCCGATTTGGAT+TGG | + | chr5.1:80093880-80093899 | None:intergenic | 45.0% |
| !! | GATTTGCTATGACTGACTCC+AGG | + | chr5.1:80094491-80094510 | None:intergenic | 45.0% |
| !! | TCCGCTGATTTCACCAAACT+AGG | - | chr5.1:80093686-80093705 | MS.gene77827:CDS | 45.0% |
| ACAGGAACTAAGGGCCGATT+TGG | + | chr5.1:80093885-80093904 | None:intergenic | 50.0% | |
| CCAATACCAAGTCCACGGTA+AGG | + | chr5.1:80095624-80095643 | None:intergenic | 50.0% | |
| GGCTATGTTTGCGAGTTTGG+AGG | + | chr5.1:80094777-80094796 | None:intergenic | 50.0% | |
| TTCAGTTCCCCCATATTGGG+GGG | - | chr5.1:80094675-80094694 | MS.gene77827:intron | 50.0% | |
| TTTGCGAGTTTAGAGGGGAG+GGG | - | chr5.1:80094525-80094544 | MS.gene77827:intron | 50.0% | |
| ! | CCTTACCGTGGACTTGGTAT+TGG | - | chr5.1:80095621-80095640 | MS.gene77827:intron | 50.0% |
| ! | GTTTTGCGAGTTTAGAGGGG+AGG | - | chr5.1:80094523-80094542 | MS.gene77827:intron | 50.0% |
| AGAAGGAAGGCGGGCAAGTT+CGG | - | chr5.1:80095568-80095587 | MS.gene77827:intron | 55.0% | |
| CGCCTTCCTTCTTCTCAAGC+CGG | + | chr5.1:80095560-80095579 | None:intergenic | 55.0% | |
| CGGCTTGAGAAGAAGGAAGG+CGG | - | chr5.1:80095558-80095577 | MS.gene77827:intron | 55.0% | |
| GGCTTGAGAAGAAGGAAGGC+GGG | - | chr5.1:80095559-80095578 | MS.gene77827:intron | 55.0% | |
| GTTTGCGAGTTTGGAGGGGA+CGG | + | chr5.1:80094771-80094790 | None:intergenic | 55.0% | |
| TTAGAGGGGAGGGGAGTAGA+TGG | - | chr5.1:80094534-80094553 | MS.gene77827:intron | 55.0% | |
| TTAGCGCCTTACCGTGGACT+TGG | - | chr5.1:80095615-80095634 | MS.gene77827:intron | 55.0% | |
| TTTGCGAGTTTGGAGGGGAC+GGG | + | chr5.1:80094770-80094789 | None:intergenic | 55.0% | |
| ! | ACTGACTCCAGGGTTTCAGC+AGG | + | chr5.1:80094480-80094499 | None:intergenic | 55.0% |
| ! | GTGTTGGCGCAATTGCATGC+CGG | - | chr5.1:80095538-80095557 | MS.gene77827:intron | 55.0% |
| !! | TGCATGCCGGCTTGAGAAGA+AGG | - | chr5.1:80095551-80095570 | MS.gene77827:intron | 55.0% |
| !! | TGCCGGCTTGAGAAGAAGGA+AGG | - | chr5.1:80095555-80095574 | MS.gene77827:intron | 55.0% |
| !!! | GGTGTTTTAGCGCCTTACCG+TGG | - | chr5.1:80095609-80095628 | MS.gene77827:intron | 55.0% |
| GAAGGAAGGCGGGCAAGTTC+GGG | - | chr5.1:80095569-80095588 | MS.gene77827:intron | 60.0% | |
| GAGGCAAGGTAGTCCCCCAA+GGG | + | chr5.1:80094726-80094745 | None:intergenic | 60.0% | |
| CGAGTTTGGAGGGGACGGGA+GGG | + | chr5.1:80094766-80094785 | None:intergenic | 65.0% | |
| GGAGGCAAGGTAGTCCCCCA+AGG | + | chr5.1:80094727-80094746 | None:intergenic | 65.0% | |
| ! | GGAGGGGACGGGAGGGTTTT+GGG | + | chr5.1:80094759-80094778 | None:intergenic | 65.0% |
| ! | TGGAGGGGACGGGAGGGTTT+TGG | + | chr5.1:80094760-80094779 | None:intergenic | 65.0% |
| GCGAGTTTGGAGGGGACGGG+AGG | + | chr5.1:80094767-80094786 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 80093554 | 80096118 | 80093554 | ID=MS.gene77827 |
| chr5.1 | mRNA | 80093554 | 80096118 | 80093554 | ID=MS.gene77827.t1;Parent=MS.gene77827 |
| chr5.1 | exon | 80095965 | 80096118 | 80095965 | ID=MS.gene77827.t1.exon1;Parent=MS.gene77827.t1 |
| chr5.1 | CDS | 80095965 | 80096118 | 80095965 | ID=cds.MS.gene77827.t1;Parent=MS.gene77827.t1 |
| chr5.1 | exon | 80094030 | 80094152 | 80094030 | ID=MS.gene77827.t1.exon2;Parent=MS.gene77827.t1 |
| chr5.1 | CDS | 80094030 | 80094152 | 80094030 | ID=cds.MS.gene77827.t1;Parent=MS.gene77827.t1 |
| chr5.1 | exon | 80093554 | 80093771 | 80093554 | ID=MS.gene77827.t1.exon3;Parent=MS.gene77827.t1 |
| chr5.1 | CDS | 80093554 | 80093771 | 80093554 | ID=cds.MS.gene77827.t1;Parent=MS.gene77827.t1 |
| Gene Sequence |
| Protein sequence |
