Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77904.t1 | XP_013443065.1 | 78.6 | 290 | 1 | 1 | 1 | 229 | 78 | 367 | 4.70E-119 | 437.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77904.t1 | A0A072TU53 | 78.6 | 290 | 1 | 1 | 1 | 229 | 78 | 367 | 3.4e-119 | 437.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049298 | MS.gene77904 | 0.803755 | 3.00E-49 | -1.69E-46 |
| MS.gene050667 | MS.gene77904 | 0.8186 | 1.80E-52 | -1.69E-46 |
| MS.gene052169 | MS.gene77904 | 0.846402 | 2.22E-59 | -1.69E-46 |
| MS.gene052209 | MS.gene77904 | 0.828113 | 1.08E-54 | -1.69E-46 |
| MS.gene052367 | MS.gene77904 | 0.80234 | 5.88E-49 | -1.69E-46 |
| MS.gene053173 | MS.gene77904 | 0.801056 | 1.08E-48 | -1.69E-46 |
| MS.gene054662 | MS.gene77904 | 0.80688 | 6.63E-50 | -1.69E-46 |
| MS.gene054941 | MS.gene77904 | 0.815131 | 1.08E-51 | -1.69E-46 |
| MS.gene05652 | MS.gene77904 | 0.858932 | 5.86E-63 | -1.69E-46 |
| MS.gene057367 | MS.gene77904 | 0.837765 | 4.29E-57 | -1.69E-46 |
| MS.gene057669 | MS.gene77904 | 0.845754 | 3.33E-59 | -1.69E-46 |
| MS.gene057990 | MS.gene77904 | 0.808761 | 2.64E-50 | -1.69E-46 |
| MS.gene06093 | MS.gene77904 | 0.81036 | 1.20E-50 | -1.69E-46 |
| MS.gene060985 | MS.gene77904 | 0.813381 | 2.63E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77904.t1 | MTR_0045s0110 | 76.207 | 290 | 8 | 3 | 1 | 229 | 78 | 367 | 6.33e-149 | 419 |
| MS.gene77904.t1 | MTR_4g039720 | 63.448 | 290 | 45 | 3 | 1 | 229 | 82 | 371 | 6.85e-125 | 358 |
| MS.gene77904.t1 | MTR_4g039740 | 62.414 | 290 | 48 | 2 | 1 | 229 | 78 | 367 | 5.30e-122 | 351 |
| MS.gene77904.t1 | MTR_4g039680 | 57.931 | 290 | 61 | 4 | 1 | 229 | 78 | 367 | 1.42e-104 | 306 |
| MS.gene77904.t1 | MTR_1g011800 | 58.427 | 178 | 72 | 1 | 48 | 223 | 191 | 368 | 1.25e-68 | 215 |
| MS.gene77904.t1 | MTR_2g103170 | 56.742 | 178 | 75 | 1 | 48 | 223 | 184 | 361 | 2.49e-66 | 209 |
| MS.gene77904.t1 | MTR_2g019600 | 45.833 | 168 | 91 | 0 | 58 | 225 | 198 | 365 | 4.82e-45 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77904.t1 | AT3G08030 | 54.983 | 291 | 69 | 3 | 1 | 229 | 33 | 323 | 6.27e-104 | 303 |
| MS.gene77904.t1 | AT3G08030 | 54.983 | 291 | 69 | 3 | 1 | 229 | 75 | 365 | 2.69e-103 | 303 |
| MS.gene77904.t1 | AT2G41810 | 48.601 | 286 | 85 | 3 | 2 | 225 | 81 | 366 | 5.34e-83 | 252 |
| MS.gene77904.t1 | AT2G41800 | 47.405 | 289 | 86 | 5 | 2 | 226 | 81 | 367 | 2.62e-79 | 242 |
| MS.gene77904.t1 | AT4G32460 | 46.667 | 285 | 90 | 3 | 1 | 223 | 33 | 317 | 3.14e-79 | 241 |
| MS.gene77904.t1 | AT4G32460 | 46.667 | 285 | 90 | 3 | 1 | 223 | 33 | 317 | 3.14e-79 | 241 |
| MS.gene77904.t1 | AT4G32460 | 46.667 | 285 | 90 | 3 | 1 | 223 | 73 | 357 | 3.48e-78 | 239 |
| MS.gene77904.t1 | AT4G32460 | 46.667 | 285 | 90 | 3 | 1 | 223 | 73 | 357 | 3.48e-78 | 239 |
| MS.gene77904.t1 | AT5G25460 | 45.965 | 285 | 92 | 3 | 1 | 223 | 77 | 361 | 5.39e-77 | 236 |
| MS.gene77904.t1 | AT1G80240 | 45.965 | 285 | 92 | 5 | 1 | 223 | 76 | 360 | 3.53e-71 | 221 |
| MS.gene77904.t1 | AT5G11420 | 58.824 | 170 | 70 | 0 | 54 | 223 | 189 | 358 | 1.21e-69 | 218 |
| MS.gene77904.t1 | AT2G34510 | 46.429 | 168 | 90 | 0 | 58 | 225 | 125 | 292 | 2.76e-46 | 156 |
| MS.gene77904.t1 | AT2G34510 | 46.429 | 168 | 90 | 0 | 58 | 225 | 211 | 378 | 1.76e-45 | 156 |
| MS.gene77904.t1 | AT1G29980 | 44.048 | 168 | 94 | 0 | 58 | 225 | 179 | 346 | 2.19e-44 | 152 |
| MS.gene77904.t1 | AT1G29980 | 44.048 | 168 | 94 | 0 | 58 | 225 | 215 | 382 | 5.15e-44 | 152 |
| MS.gene77904.t1 | AT5G14150 | 33.333 | 174 | 110 | 3 | 58 | 229 | 192 | 361 | 2.07e-22 | 94.4 |
| MS.gene77904.t1 | AT5G14150 | 33.333 | 174 | 110 | 3 | 58 | 229 | 192 | 361 | 2.07e-22 | 94.4 |
Find 51 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGTTGGTTGAGTTGAAAAT+TGG | 0.165055 | 3.4:+24636670 | None:intergenic |
| CCCTTCCCTTCGGATTTAAA+TGG | 0.190979 | 3.4:+24636364 | None:intergenic |
| CAACTCTATGCTTTAATTCT+TGG | 0.196335 | 3.4:-24637982 | MS.gene77904:CDS |
| TTCAATTTCTCAAACAATTA+AGG | 0.237533 | 3.4:-24638016 | MS.gene77904:CDS |
| ATGGTCTATTGCAGTTAATT+TGG | 0.269737 | 3.4:-24636725 | MS.gene77904:intron |
| CATACAAGAATCGATGATTA+TGG | 0.329909 | 3.4:-24636265 | MS.gene77904:CDS |
| CTGTGGTCCTGTTCTTGATC+AGG | 0.368709 | 3.4:-24636236 | MS.gene77904:CDS |
| CGTTGGTTGAGTTGAAAATT+GGG | 0.369942 | 3.4:+24636671 | None:intergenic |
| GGAGCAGTCGAGCTTGTTGC+CGG | 0.370727 | 3.4:-24636529 | MS.gene77904:CDS |
| TGCAATGGCGCTTTCTCTGC+CGG | 0.406086 | 3.4:+24636510 | None:intergenic |
| TTCAATGTCCCATTCGGACT+TGG | 0.408118 | 3.4:-24636550 | MS.gene77904:CDS |
| ATCTCTGTGCCACCACAAAC+TGG | 0.431643 | 3.4:-24637922 | MS.gene77904:intron |
| CTTTAATTCTTGGTGCATCA+AGG | 0.450617 | 3.4:-24637972 | MS.gene77904:CDS |
| CAAATTCATATTTAAGCCAC+AGG | 0.459329 | 3.4:+24636202 | None:intergenic |
| TATGAATTTACCCTTCCCTT+CGG | 0.469027 | 3.4:+24636354 | None:intergenic |
| AAGCATTTCAATGTCCCATT+CGG | 0.485220 | 3.4:-24636556 | MS.gene77904:CDS |
| AAAGTTCCATTTAAATCCGA+AGG | 0.489665 | 3.4:-24636370 | MS.gene77904:CDS |
| ACTATAACCTGATCAAGAAC+AGG | 0.503775 | 3.4:+24636229 | None:intergenic |
| TCCATTTAAATCCGAAGGGA+AGG | 0.505472 | 3.4:-24636365 | MS.gene77904:CDS |
| AGAGATCTTCTTGTTGTGGT+GGG | 0.513960 | 3.4:+24636638 | None:intergenic |
| TCTACTCACCACTCCCTGGT+TGG | 0.515615 | 3.4:-24636618 | MS.gene77904:CDS |
| CGACTGCTCCAAGTCCGAAT+GGG | 0.519844 | 3.4:+24636542 | None:intergenic |
| GTTGAGTTGAAAATTGGGAA+TGG | 0.524305 | 3.4:+24636676 | None:intergenic |
| AATGGACCCTCTTCAAAGCT+AGG | 0.531679 | 3.4:+24636694 | None:intergenic |
| ATTAAAGCATAGAGTTGACC+AGG | 0.539744 | 3.4:+24637988 | None:intergenic |
| TAGAGATCTTCTTGTTGTGG+TGG | 0.543583 | 3.4:+24636637 | None:intergenic |
| TCGACTGCTCCAAGTCCGAA+TGG | 0.550994 | 3.4:+24636541 | None:intergenic |
| CAAACAATTAAGGTCAAACC+TGG | 0.553729 | 3.4:-24638006 | MS.gene77904:CDS |
| TACAAGATCACATTCTCAGT+TGG | 0.553917 | 3.4:-24636457 | MS.gene77904:CDS |
| AAAGGAACATCACCAGTTTG+TGG | 0.558532 | 3.4:+24637910 | None:intergenic |
| GAGTAGAGATCTTCTTGTTG+TGG | 0.568431 | 3.4:+24636634 | None:intergenic |
| TAGAATGTGAGTCTAGTCCT+TGG | 0.569730 | 3.4:+24636301 | None:intergenic |
| CCATTTAAATCCGAAGGGAA+GGG | 0.572389 | 3.4:-24636364 | MS.gene77904:CDS |
| TGTTCTGAGAATTTGTGCAA+TGG | 0.574231 | 3.4:+24636495 | None:intergenic |
| AGCTTTAAACTTGAAACTCA+CGG | 0.576730 | 3.4:+24636330 | None:intergenic |
| GGAACACATGCTGTGAGGCT+AGG | 0.578100 | 3.4:-24638048 | MS.gene77904:CDS |
| GCATGTGTTCCATGAGTCAC+CGG | 0.580993 | 3.4:+24638060 | None:intergenic |
| GATCTCTACTCACCACTCCC+TGG | 0.582407 | 3.4:-24636622 | MS.gene77904:CDS |
| TCGATGATCCAACCAGGGAG+TGG | 0.586201 | 3.4:+24636610 | None:intergenic |
| AAGTTCCATTTAAATCCGAA+GGG | 0.616315 | 3.4:-24636369 | MS.gene77904:CDS |
| AGAGACTCGATGATCCAACC+AGG | 0.627050 | 3.4:+24636604 | None:intergenic |
| GATGATTATGGCTCTCTCTG+TGG | 0.637773 | 3.4:-24636253 | MS.gene77904:CDS |
| TGGTTGTCATGGATCAATGA+TGG | 0.645175 | 3.4:-24636422 | MS.gene77904:CDS |
| AGTTTAAAGCTATCGCACCA+AGG | 0.662461 | 3.4:-24636318 | MS.gene77904:CDS |
| AAATTCATATTTAAGCCACA+GGG | 0.678492 | 3.4:+24636203 | None:intergenic |
| GGAACATCACCAGTTTGTGG+TGG | 0.691615 | 3.4:+24637913 | None:intergenic |
| TCAGGTTATAGTGTCCCCTG+TGG | 0.698590 | 3.4:-24636218 | MS.gene77904:CDS |
| TGGTGGGAGTAAAACACCGT+TGG | 0.711037 | 3.4:+24636654 | None:intergenic |
| CTCATGGAACACATGCTGTG+AGG | 0.712106 | 3.4:-24638053 | MS.gene77904:CDS |
| AATTCATATTTAAGCCACAG+GGG | 0.736491 | 3.4:+24636204 | None:intergenic |
| GAGACTCGATGATCCAACCA+GGG | 0.750509 | 3.4:+24636605 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATCTTATACTAACTGA+TGG | - | chr3.4:24636970-24636989 | MS.gene77904:intron | 20.0% |
| !! | ACCAAAAAAATGAATTGAAA+AGG | - | chr3.4:24637161-24637180 | MS.gene77904:intron | 20.0% |
| !! | CAAAAAAATGAATTGAAAAG+GGG | - | chr3.4:24637163-24637182 | MS.gene77904:intron | 20.0% |
| !! | CCAAAAAAATGAATTGAAAA+GGG | - | chr3.4:24637162-24637181 | MS.gene77904:intron | 20.0% |
| !! | TTCAATTTCTCAAACAATTA+AGG | - | chr3.4:24636266-24636285 | MS.gene77904:CDS | 20.0% |
| !!! | ACTTGATAAGAACTTTTTTT+TGG | - | chr3.4:24636917-24636936 | MS.gene77904:intron | 20.0% |
| !!! | ATAATCATTAATGGCTTTAT+CGG | + | chr3.4:24637539-24637558 | None:intergenic | 20.0% |
| !!! | ATCGACTTCAAATATTTATT+TGG | - | chr3.4:24637206-24637225 | MS.gene77904:intron | 20.0% |
| !!! | ATTAATGAATTTTCAGATGA+AGG | - | chr3.4:24637041-24637060 | MS.gene77904:intron | 20.0% |
| ! | AGTATTTAACAAAACTGATG+TGG | + | chr3.4:24636582-24636601 | None:intergenic | 25.0% |
| ! | ATGGTTACATTCAATCATTT+CGG | + | chr3.4:24637408-24637427 | None:intergenic | 25.0% |
| ! | ATGTCAAATAGTAACTATAG+TGG | - | chr3.4:24636794-24636813 | MS.gene77904:intron | 25.0% |
| ! | CAATAGACCATAATCATTAA+TGG | + | chr3.4:24637548-24637567 | None:intergenic | 25.0% |
| ! | GATAAAGCCATTAATGATTA+TGG | - | chr3.4:24637538-24637557 | MS.gene77904:intron | 25.0% |
| ! | GCAAAAAAACATACATTTGA+GGG | + | chr3.4:24637233-24637252 | None:intergenic | 25.0% |
| ! | TCTACATAATTGAACTTAAC+AGG | - | chr3.4:24636893-24636912 | MS.gene77904:intron | 25.0% |
| ! | TGCAAAAAAACATACATTTG+AGG | + | chr3.4:24637234-24637253 | None:intergenic | 25.0% |
| !! | TATGATCTTAGCATTTCTTT+TGG | - | chr3.4:24637485-24637504 | MS.gene77904:intron | 25.0% |
| !!! | CCCTTTTCAATTCATTTTTT+TGG | + | chr3.4:24637165-24637184 | None:intergenic | 25.0% |
| AAAGTTCCATTTAAATCCGA+AGG | - | chr3.4:24637912-24637931 | MS.gene77904:intron | 30.0% | |
| AAGTTCCATTTAAATCCGAA+GGG | - | chr3.4:24637913-24637932 | MS.gene77904:intron | 30.0% | |
| ACAAGCACTAAATAGCATAT+TGG | + | chr3.4:24636646-24636665 | None:intergenic | 30.0% | |
| AGACTATACAATGTTTGCAA+AGG | + | chr3.4:24636393-24636412 | None:intergenic | 30.0% | |
| ATATGATAGACCAAAGAACA+TGG | + | chr3.4:24637073-24637092 | None:intergenic | 30.0% | |
| ATGGTCTATTGCAGTTAATT+TGG | - | chr3.4:24637557-24637576 | MS.gene77904:intron | 30.0% | |
| CAAACATTGTATAGTCTCAA+TGG | - | chr3.4:24636396-24636415 | MS.gene77904:CDS | 30.0% | |
| CAACTCTATGCTTTAATTCT+TGG | - | chr3.4:24636300-24636319 | MS.gene77904:CDS | 30.0% | |
| CATACAAGAATCGATGATTA+TGG | - | chr3.4:24638017-24638036 | MS.gene77904:CDS | 30.0% | |
| CTATTTAGTAATTCCCTTGA+AGG | - | chr3.4:24637323-24637342 | MS.gene77904:intron | 30.0% | |
| TATGTTTCATTACCTCTTGT+AGG | + | chr3.4:24636558-24636577 | None:intergenic | 30.0% | |
| TTAGTGCTTGTTTGATATCA+TGG | - | chr3.4:24636655-24636674 | MS.gene77904:CDS | 30.0% | |
| !! | AAAAATCCTAGCTTTGAAGA+GGG | - | chr3.4:24637582-24637601 | MS.gene77904:intron | 30.0% |
| !! | AAAAGAGTTGCGCTTTTTAA+TGG | - | chr3.4:24637274-24637293 | MS.gene77904:intron | 30.0% |
| !! | AGCTTTAAACTTGAAACTCA+CGG | + | chr3.4:24637955-24637974 | None:intergenic | 30.0% |
| !! | TTGCTAACGTTTCTTTTTCA+TGG | - | chr3.4:24637137-24637156 | MS.gene77904:intron | 30.0% |
| AAGCATTTCAATGTCCCATT+CGG | - | chr3.4:24637726-24637745 | MS.gene77904:intron | 35.0% | |
| AAGGATCCAATATCCTTCAA+GGG | + | chr3.4:24637339-24637358 | None:intergenic | 35.0% | |
| ACTATAACCTGATCAAGAAC+AGG | + | chr3.4:24638056-24638075 | None:intergenic | 35.0% | |
| ATAGCAATTGCATCAAGAAG+TGG | + | chr3.4:24636513-24636532 | None:intergenic | 35.0% | |
| ATGTAGAATCCTAGAAGTGA+AGG | + | chr3.4:24636880-24636899 | None:intergenic | 35.0% | |
| ATTAAAGCATAGAGTTGACC+AGG | + | chr3.4:24636297-24636316 | None:intergenic | 35.0% | |
| CAAACAATTAAGGTCAAACC+TGG | - | chr3.4:24636276-24636295 | MS.gene77904:CDS | 35.0% | |
| GATTGAATGTAACCATGTGT+TGG | - | chr3.4:24637412-24637431 | MS.gene77904:intron | 35.0% | |
| GTAATTCCCTTGAAGGATAT+TGG | - | chr3.4:24637330-24637349 | MS.gene77904:intron | 35.0% | |
| TAAGGATCCAATATCCTTCA+AGG | + | chr3.4:24637340-24637359 | None:intergenic | 35.0% | |
| TACAAGATCACATTCTCAGT+TGG | - | chr3.4:24637825-24637844 | MS.gene77904:intron | 35.0% | |
| TATGAATTTACCCTTCCCTT+CGG | + | chr3.4:24637931-24637950 | None:intergenic | 35.0% | |
| TGTAGAATCCTAGAAGTGAA+GGG | + | chr3.4:24636879-24636898 | None:intergenic | 35.0% | |
| TTGTAGCTTCGACAAAATCA+TGG | - | chr3.4:24636713-24636732 | MS.gene77904:CDS | 35.0% | |
| ! | AAAGTGACTTTTCATAACCC+TGG | - | chr3.4:24636462-24636481 | MS.gene77904:CDS | 35.0% |
| ! | AAGGTTGTTTCCATGTTCTT+TGG | - | chr3.4:24637060-24637079 | MS.gene77904:intron | 35.0% |
| ! | AATGGTGATGTTATTGCATG+GGG | - | chr3.4:24636414-24636433 | MS.gene77904:CDS | 35.0% |
| ! | CAATGGTGATGTTATTGCAT+GGG | - | chr3.4:24636413-24636432 | MS.gene77904:CDS | 35.0% |
| ! | CCAATTTTCAACTCAACCAA+CGG | - | chr3.4:24637612-24637631 | MS.gene77904:intron | 35.0% |
| ! | CTTTAATTCTTGGTGCATCA+AGG | - | chr3.4:24636310-24636329 | MS.gene77904:CDS | 35.0% |
| ! | TCAATGGTGATGTTATTGCA+TGG | - | chr3.4:24636412-24636431 | MS.gene77904:CDS | 35.0% |
| ! | TGAAAAGGGGAGTATGTATT+TGG | - | chr3.4:24637176-24637195 | MS.gene77904:intron | 35.0% |
| ! | TTTTGTAGCACTAACACTTC+AGG | + | chr3.4:24637465-24637484 | None:intergenic | 35.0% |
| !! | CGTTGGTTGAGTTGAAAATT+GGG | + | chr3.4:24637614-24637633 | None:intergenic | 35.0% |
| !! | GAAAAATCCTAGCTTTGAAG+AGG | - | chr3.4:24637581-24637600 | MS.gene77904:intron | 35.0% |
| !! | GCAACTCTTTTAAGTGTGTT+TGG | + | chr3.4:24637265-24637284 | None:intergenic | 35.0% |
| !! | GTTGAGTTGAAAATTGGGAA+TGG | + | chr3.4:24637609-24637628 | None:intergenic | 35.0% |
| !! | TGTTCTGAGAATTTGTGCAA+TGG | + | chr3.4:24637790-24637809 | None:intergenic | 35.0% |
| AAAGGAACATCACCAGTTTG+TGG | + | chr3.4:24636375-24636394 | None:intergenic | 40.0% | |
| CACATAACACACCTAAGTAG+TGG | + | chr3.4:24637009-24637028 | None:intergenic | 40.0% | |
| CACTACTTAGGTGTGTTATG+TGG | - | chr3.4:24637007-24637026 | MS.gene77904:intron | 40.0% | |
| CCATTTAAATCCGAAGGGAA+GGG | - | chr3.4:24637918-24637937 | MS.gene77904:intron | 40.0% | |
| CTATCAGTTCTCCACTACTT+AGG | - | chr3.4:24636995-24637014 | MS.gene77904:intron | 40.0% | |
| GAGTAGAGATCTTCTTGTTG+TGG | + | chr3.4:24637651-24637670 | None:intergenic | 40.0% | |
| GATCCTTACCTATGAAGCAT+AGG | - | chr3.4:24637352-24637371 | MS.gene77904:intron | 40.0% | |
| GTTCAAGAAGATCCTACTTG+TGG | - | chr3.4:24636486-24636505 | MS.gene77904:CDS | 40.0% | |
| TAGAATGTGAGTCTAGTCCT+TGG | + | chr3.4:24637984-24638003 | None:intergenic | 40.0% | |
| TAGCTTCGACAAAATCATGG+TGG | - | chr3.4:24636716-24636735 | MS.gene77904:intron | 40.0% | |
| TAGGATCTTCTTGAACACCA+GGG | + | chr3.4:24636482-24636501 | None:intergenic | 40.0% | |
| TCATTACCTCTTGTAGGCAT+TGG | + | chr3.4:24636552-24636571 | None:intergenic | 40.0% | |
| TCCATTTAAATCCGAAGGGA+AGG | - | chr3.4:24637917-24637936 | MS.gene77904:intron | 40.0% | |
| TGGTTGTCATGGATCAATGA+TGG | - | chr3.4:24637860-24637879 | MS.gene77904:intron | 40.0% | |
| TGTATGTGCCTATGCTTCAT+AGG | + | chr3.4:24637363-24637382 | None:intergenic | 40.0% | |
| ! | AAGGGGAGTATGTATTTGGT+TGG | - | chr3.4:24637180-24637199 | MS.gene77904:intron | 40.0% |
| ! | AGAGATCTTCTTGTTGTGGT+GGG | + | chr3.4:24637647-24637666 | None:intergenic | 40.0% |
| ! | AGTTTAAAGCTATCGCACCA+AGG | - | chr3.4:24637964-24637983 | MS.gene77904:CDS | 40.0% |
| ! | TAGAGATCTTCTTGTTGTGG+TGG | + | chr3.4:24637648-24637667 | None:intergenic | 40.0% |
| !! | CCGTTGGTTGAGTTGAAAAT+TGG | + | chr3.4:24637615-24637634 | None:intergenic | 40.0% |
| !!! | ATGTTTTTTCCGGTGACTCA+TGG | - | chr3.4:24636213-24636232 | MS.gene77904:CDS | 40.0% |
| AATGGACCCTCTTCAAAGCT+AGG | + | chr3.4:24637591-24637610 | None:intergenic | 45.0% | |
| ATAGGCATGGTATGTGCATC+AGG | + | chr3.4:24636855-24636874 | None:intergenic | 45.0% | |
| CAAGTGTGTGTCCTGTATCA+CGG | + | chr3.4:24636764-24636783 | None:intergenic | 45.0% | |
| CCCTTCCCTTCGGATTTAAA+TGG | + | chr3.4:24637921-24637940 | None:intergenic | 45.0% | |
| GACGCGAAAAATGGTTGTCA+TGG | - | chr3.4:24637849-24637868 | MS.gene77904:intron | 45.0% | |
| GATGATTATGGCTCTCTCTG+TGG | - | chr3.4:24638029-24638048 | MS.gene77904:CDS | 45.0% | |
| GTAGGATCTTCTTGAACACC+AGG | + | chr3.4:24636483-24636502 | None:intergenic | 45.0% | |
| GTGCCTATGCTTCATAGGTA+AGG | + | chr3.4:24637358-24637377 | None:intergenic | 45.0% | |
| TAGGCATGGTATGTGCATCA+GGG | + | chr3.4:24636854-24636873 | None:intergenic | 45.0% | |
| TCAAGAAGTGGACCACAAGT+AGG | + | chr3.4:24636501-24636520 | None:intergenic | 45.0% | |
| TCAGTTGGAGACGCGAAAAA+TGG | - | chr3.4:24637840-24637859 | MS.gene77904:intron | 45.0% | |
| TCATGGTGAGTTTGACACTG+TGG | - | chr3.4:24636672-24636691 | MS.gene77904:CDS | 45.0% | |
| TTCAATGTCCCATTCGGACT+TGG | - | chr3.4:24637732-24637751 | MS.gene77904:intron | 45.0% | |
| ! | ATCCTAGAAGTGAAGGGCAT+AGG | + | chr3.4:24636873-24636892 | None:intergenic | 45.0% |
| !! | TACCTCTTGTAGGCATTGGA+GGG | + | chr3.4:24636548-24636567 | None:intergenic | 45.0% |
| !! | TTACCTCTTGTAGGCATTGG+AGG | + | chr3.4:24636549-24636568 | None:intergenic | 45.0% |
| AGAGACTCGATGATCCAACC+AGG | + | chr3.4:24637681-24637700 | None:intergenic | 50.0% | |
| ATCTCTGTGCCACCACAAAC+TGG | - | chr3.4:24636360-24636379 | MS.gene77904:CDS | 50.0% | |
| CGTGATACAGGACACACACT+TGG | - | chr3.4:24636762-24636781 | MS.gene77904:intron | 50.0% | |
| CTCATGGAACACATGCTGTG+AGG | - | chr3.4:24636229-24636248 | MS.gene77904:CDS | 50.0% | |
| CTGTGGTCCTGTTCTTGATC+AGG | - | chr3.4:24638046-24638065 | MS.gene77904:CDS | 50.0% | |
| GAGACTCGATGATCCAACCA+GGG | + | chr3.4:24637680-24637699 | None:intergenic | 50.0% | |
| GCATGTGTTCCATGAGTCAC+CGG | + | chr3.4:24636225-24636244 | None:intergenic | 50.0% | |
| GGAACATCACCAGTTTGTGG+TGG | + | chr3.4:24636372-24636391 | None:intergenic | 50.0% | |
| TACCCTCCAATGCCTACAAG+AGG | - | chr3.4:24636543-24636562 | MS.gene77904:CDS | 50.0% | |
| TCAGGTTATAGTGTCCCCTG+TGG | - | chr3.4:24638064-24638083 | MS.gene77904:CDS | 50.0% | |
| TGCCTATGCCCTTCACTTCT+AGG | - | chr3.4:24636868-24636887 | MS.gene77904:intron | 50.0% | |
| TGGTGGGAGTAAAACACCGT+TGG | + | chr3.4:24637631-24637650 | None:intergenic | 50.0% | |
| TGTGTGTCCTGTATCACGGT+GGG | + | chr3.4:24636760-24636779 | None:intergenic | 50.0% | |
| ! | AGAAGTGAAGGGCATAGGCA+TGG | + | chr3.4:24636868-24636887 | None:intergenic | 50.0% |
| !! | ACCATGTGTTGGTGTCGTGT+CGG | - | chr3.4:24637423-24637442 | MS.gene77904:intron | 50.0% |
| CGACTGCTCCAAGTCCGAAT+GGG | + | chr3.4:24637743-24637762 | None:intergenic | 55.0% | |
| GATCTCTACTCACCACTCCC+TGG | - | chr3.4:24637660-24637679 | MS.gene77904:intron | 55.0% | |
| GGAACACATGCTGTGAGGCT+AGG | - | chr3.4:24636234-24636253 | MS.gene77904:CDS | 55.0% | |
| GTGTGTGTCCTGTATCACGG+TGG | + | chr3.4:24636761-24636780 | None:intergenic | 55.0% | |
| TCCGACACGACACCAACACA+TGG | + | chr3.4:24637427-24637446 | None:intergenic | 55.0% | |
| TCGACTGCTCCAAGTCCGAA+TGG | + | chr3.4:24637744-24637763 | None:intergenic | 55.0% | |
| TCGATGATCCAACCAGGGAG+TGG | + | chr3.4:24637675-24637694 | None:intergenic | 55.0% | |
| TCTACTCACCACTCCCTGGT+TGG | - | chr3.4:24637664-24637683 | MS.gene77904:intron | 55.0% | |
| TGCAATGGCGCTTTCTCTGC+CGG | + | chr3.4:24637775-24637794 | None:intergenic | 55.0% | |
| TGTCCAACCCACCGTGATAC+AGG | - | chr3.4:24636750-24636769 | MS.gene77904:intron | 55.0% | |
| TGTCCTGTATCACGGTGGGT+TGG | + | chr3.4:24636756-24636775 | None:intergenic | 55.0% | |
| !! | TGTGTTGGTGTCGTGTCGGA+TGG | - | chr3.4:24637427-24637446 | MS.gene77904:intron | 55.0% |
| !! | GGAGCAGTCGAGCTTGTTGC+CGG | - | chr3.4:24637753-24637772 | MS.gene77904:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 24636213 | 24638091 | 24636213 | ID=MS.gene77904 |
| chr3.4 | mRNA | 24636213 | 24638091 | 24636213 | ID=MS.gene77904.t1;Parent=MS.gene77904 |
| chr3.4 | exon | 24637923 | 24638091 | 24637923 | ID=MS.gene77904.t1.exon1;Parent=MS.gene77904.t1 |
| chr3.4 | CDS | 24637923 | 24638091 | 24637923 | ID=cds.MS.gene77904.t1;Parent=MS.gene77904.t1 |
| chr3.4 | exon | 24636213 | 24636733 | 24636213 | ID=MS.gene77904.t1.exon2;Parent=MS.gene77904.t1 |
| chr3.4 | CDS | 24636213 | 24636733 | 24636213 | ID=cds.MS.gene77904.t1;Parent=MS.gene77904.t1 |
| Gene Sequence |
| Protein sequence |
