Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78006.t1 | RHN65930.1 | 93.3 | 342 | 21 | 1 | 1 | 340 | 1 | 342 | 3.40E-166 | 594.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78006.t1 | Q5M947 | 36.2 | 116 | 59 | 4 | 224 | 326 | 159 | 272 | 1.4e-06 | 55.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78006.t1 | A0A396IKZ4 | 93.3 | 342 | 21 | 1 | 1 | 340 | 1 | 342 | 2.5e-166 | 594.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene78006 | 0.801113 | 1.05E-48 | -1.69E-46 |
| MS.gene049824 | MS.gene78006 | 0.809041 | 2.30E-50 | -1.69E-46 |
| MS.gene049825 | MS.gene78006 | 0.827144 | 1.84E-54 | -1.69E-46 |
| MS.gene049873 | MS.gene78006 | 0.818112 | 2.32E-52 | -1.69E-46 |
| MS.gene052584 | MS.gene78006 | 0.806554 | 7.77E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene78006 | 0.802009 | 6.87E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene78006 | 0.805055 | 1.61E-49 | -1.69E-46 |
| MS.gene053294 | MS.gene78006 | 0.807267 | 5.49E-50 | -1.69E-46 |
| MS.gene055555 | MS.gene78006 | 0.820363 | 7.14E-53 | -1.69E-46 |
| MS.gene055808 | MS.gene78006 | 0.840646 | 7.67E-58 | -1.69E-46 |
| MS.gene056091 | MS.gene78006 | 0.842713 | 2.19E-58 | -1.69E-46 |
| MS.gene056403 | MS.gene78006 | 0.833829 | 4.26E-56 | -1.69E-46 |
| MS.gene056605 | MS.gene78006 | 0.842816 | 2.05E-58 | -1.69E-46 |
| MS.gene05689 | MS.gene78006 | 0.811537 | 6.66E-51 | -1.69E-46 |
| MS.gene058498 | MS.gene78006 | 0.820728 | 5.88E-53 | -1.69E-46 |
| MS.gene058500 | MS.gene78006 | 0.812542 | 4.02E-51 | -1.69E-46 |
| MS.gene05953 | MS.gene78006 | 0.808584 | 2.88E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene78006 | 0.835299 | 1.82E-56 | -1.69E-46 |
| MS.gene059935 | MS.gene78006 | 0.862189 | 6.04E-64 | -1.69E-46 |
| MS.gene060429 | MS.gene78006 | 0.802759 | 4.82E-49 | -1.69E-46 |
| MS.gene060586 | MS.gene78006 | 0.817726 | 2.84E-52 | -1.69E-46 |
| MS.gene060763 | MS.gene78006 | 0.811629 | 6.36E-51 | -1.69E-46 |
| MS.gene060830 | MS.gene78006 | 0.821262 | 4.43E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78006.t1 | AT5G48240 | 46.809 | 329 | 133 | 8 | 16 | 339 | 18 | 309 | 5.55e-79 | 244 |
| MS.gene78006.t1 | AT5G48240 | 41.935 | 372 | 135 | 8 | 16 | 339 | 18 | 356 | 2.88e-72 | 228 |
| MS.gene78006.t1 | AT5G48240 | 44.295 | 298 | 116 | 7 | 16 | 308 | 18 | 270 | 9.89e-61 | 196 |
Find 76 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCACACCTGCTAATTATT+TGG | 0.128361 | 3.4:+13800032 | MS.gene78006:CDS |
| CGCTGAAAAGAAGGCTTCTT+TGG | 0.194609 | 3.4:-13801412 | None:intergenic |
| TGTGGTGGCTTCATCACTTT+TGG | 0.308341 | 3.4:-13799262 | None:intergenic |
| CTTCATCGGAACTGCTATCT+TGG | 0.315922 | 3.4:-13802369 | None:intergenic |
| GTGAAGGTTGTAAAGCATTC+AGG | 0.319257 | 3.4:+13799617 | MS.gene78006:CDS |
| GAGCTGGGAAAGAGGAAGTT+TGG | 0.319454 | 3.4:+13799205 | MS.gene78006:CDS |
| AGCAGTTCCGATGAAGATTA+AGG | 0.322931 | 3.4:+13802376 | MS.gene78006:CDS |
| CTTCTTTATAATGCTCTTGA+AGG | 0.331528 | 3.4:-13799644 | None:intergenic |
| GAGAGGATGAACAACCTTCT+TGG | 0.339326 | 3.4:+13802173 | MS.gene78006:CDS |
| CTTTGCATCCCTGTTCTTTG+AGG | 0.339480 | 3.4:-13800396 | None:intergenic |
| TCACTGAATTTAGTAATTCC+TGG | 0.358866 | 3.4:-13799598 | None:intergenic |
| GGCTGGACCCCTCAAAGAAC+AGG | 0.375162 | 3.4:+13800387 | MS.gene78006:CDS |
| TTCTGCTACCCCTTCATCTT+CGG | 0.376152 | 3.4:-13799491 | None:intergenic |
| TTTGCATCCCTGTTCTTTGA+GGG | 0.379386 | 3.4:-13800395 | None:intergenic |
| GCTGACAAGTTCGAGAATAA+AGG | 0.387185 | 3.4:+13802219 | MS.gene78006:CDS |
| CTTGTTACAGCTAGCAGAAA+AGG | 0.390626 | 3.4:+13800005 | MS.gene78006:intron |
| TCCCTTGTTTGTGCTTGCAT+TGG | 0.391353 | 3.4:-13802152 | None:intergenic |
| TGTAAAGTTTCTTCATTTGT+TGG | 0.412234 | 3.4:-13799309 | None:intergenic |
| GGAGACAGAGCGCAAGATCA+AGG | 0.426021 | 3.4:+13799823 | MS.gene78006:CDS |
| GAGACAACTGCCCCTGCTAC+TGG | 0.429501 | 3.4:+13799373 | MS.gene78006:CDS |
| CTTATAAGTGTAGCGACAAA+AGG | 0.434006 | 3.4:+13800072 | MS.gene78006:CDS |
| AGAGGATGAACAACCTTCTT+GGG | 0.435774 | 3.4:+13802174 | MS.gene78006:CDS |
| GCGTTAGGGAAGCCAGCTAT+TGG | 0.445925 | 3.4:+13801432 | MS.gene78006:CDS |
| TATAGAAAAGCTTGCGGAAG+AGG | 0.447708 | 3.4:+13799802 | MS.gene78006:CDS |
| TTCATCGGAACTGCTATCTT+GGG | 0.454720 | 3.4:-13802368 | None:intergenic |
| ATCACCTTTGCACCAATAGC+TGG | 0.456798 | 3.4:-13801444 | None:intergenic |
| ATGGAAGTGAGCTGGGAAAG+AGG | 0.457388 | 3.4:+13799197 | MS.gene78006:CDS |
| CAAGTTCGAGAATAAAGGAT+TGG | 0.462911 | 3.4:+13802224 | MS.gene78006:CDS |
| TTCAAAACCTTAATCTTCAT+CGG | 0.464287 | 3.4:-13802383 | None:intergenic |
| GAGTGTTTCTGATGAGTTGT+TGG | 0.478230 | 3.4:+13799666 | MS.gene78006:CDS |
| CTTCCCTAACGCTGAAAAGA+AGG | 0.488467 | 3.4:-13801421 | None:intergenic |
| AAAGCTCAAGTTGCTCAGAA+AGG | 0.489370 | 3.4:+13800365 | MS.gene78006:CDS |
| TTCTTGTGATCTGACAATAC+TGG | 0.489621 | 3.4:-13799773 | None:intergenic |
| AAGCTCAAGTTGCTCAGAAA+GGG | 0.498953 | 3.4:+13800366 | MS.gene78006:CDS |
| CGTCTAGTACTCCCAGTAGC+AGG | 0.499349 | 3.4:-13799385 | None:intergenic |
| AGCATATAATTATCGCGTAA+TGG | 0.502059 | 3.4:-13802199 | None:intergenic |
| AAGTTCGAGAATAAAGGATT+GGG | 0.504352 | 3.4:+13802225 | MS.gene78006:CDS |
| CTCAAAGAACAGGGATGCAA+AGG | 0.511691 | 3.4:+13800397 | MS.gene78006:CDS |
| GAAGATCTATCCGAAGATGA+AGG | 0.518592 | 3.4:+13799481 | MS.gene78006:CDS |
| TTGCATCCCTGTTCTTTGAG+GGG | 0.522520 | 3.4:-13800394 | None:intergenic |
| TTGTTACAGCTAGCAGAAAA+GGG | 0.523614 | 3.4:+13800006 | MS.gene78006:intron |
| GAGGAGGATGAAATTCAGCC+AGG | 0.526822 | 3.4:+13799580 | MS.gene78006:CDS |
| AGACAACTGCCCCTGCTACT+GGG | 0.534405 | 3.4:+13799374 | MS.gene78006:CDS |
| GGCCAATGCAAGCACAAACA+AGG | 0.534686 | 3.4:+13802150 | MS.gene78006:intron |
| TGCGCGTCCAAATAATTAGC+AGG | 0.542869 | 3.4:-13800039 | None:intergenic |
| GAGACAGAGCGCAAGATCAA+GGG | 0.544740 | 3.4:+13799824 | MS.gene78006:CDS |
| GGTTGAGCATGGAAGTGAGC+TGG | 0.552552 | 3.4:+13799189 | MS.gene78006:CDS |
| TCAAGTTGCTCAGAAAGGGC+TGG | 0.553946 | 3.4:+13800370 | MS.gene78006:CDS |
| AAGATCTATCCGAAGATGAA+GGG | 0.556404 | 3.4:+13799482 | MS.gene78006:CDS |
| ACTTTCTTCTGTCCGTGTGG+TGG | 0.558848 | 3.4:-13799277 | None:intergenic |
| GAAACACAAGTGGTTGAGCA+TGG | 0.561474 | 3.4:+13799178 | MS.gene78006:CDS |
| GTCTAGTACTCCCAGTAGCA+GGG | 0.564848 | 3.4:-13799384 | None:intergenic |
| CTCTGAGGATGAAGATGATG+AGG | 0.568128 | 3.4:+13799561 | MS.gene78006:CDS |
| TGGGAAAGAGGAAGTTTGGT+AGG | 0.575576 | 3.4:+13799209 | MS.gene78006:CDS |
| TCGCGTAATGGAGCCCAAGA+AGG | 0.580268 | 3.4:-13802187 | None:intergenic |
| TCAAAGAACAGGGATGCAAA+GGG | 0.580392 | 3.4:+13800398 | MS.gene78006:CDS |
| GGAATTACTAAATTCAGTGA+AGG | 0.581563 | 3.4:+13799601 | MS.gene78006:CDS |
| GTTGAGCATGGAAGTGAGCT+GGG | 0.585137 | 3.4:+13799190 | MS.gene78006:CDS |
| GAAGCCAGCTATTGGTGCAA+AGG | 0.585865 | 3.4:+13801440 | MS.gene78006:CDS |
| GAAGATGAAGGGGTAGCAGA+AGG | 0.603387 | 3.4:+13799493 | MS.gene78006:CDS |
| GCCAATGCAAGCACAAACAA+GGG | 0.604219 | 3.4:+13802151 | MS.gene78006:CDS |
| TGCAAGCACAAACAAGGGAG+AGG | 0.605005 | 3.4:+13802156 | MS.gene78006:CDS |
| TTAACTTTCTTCTGTCCGTG+TGG | 0.619849 | 3.4:-13799280 | None:intergenic |
| ATAAGTGTAGCGACAAAAGG+AGG | 0.628567 | 3.4:+13800075 | MS.gene78006:CDS |
| TCTTGTTATAGAAAAGCTTG+CGG | 0.634957 | 3.4:+13799796 | MS.gene78006:CDS |
| AGATCTATCCGAAGATGAAG+GGG | 0.651704 | 3.4:+13799483 | MS.gene78006:CDS |
| AGGAAGTTTGGTAGGAACCA+AGG | 0.652606 | 3.4:+13799217 | MS.gene78006:CDS |
| GTGGCATCTATGAAGACTAG+AGG | 0.654804 | 3.4:+13799409 | MS.gene78006:CDS |
| TAAGAAAGTTAATTTCTCTG+AGG | 0.655143 | 3.4:+13799546 | MS.gene78006:CDS |
| TGAGGATGAAGATGATGAGG+AGG | 0.663150 | 3.4:+13799564 | MS.gene78006:CDS |
| TACTGGGAGTACTAGACGTG+TGG | 0.664181 | 3.4:+13799390 | MS.gene78006:CDS |
| CATGGCTGAAGAAACACAAG+TGG | 0.666963 | 3.4:+13799168 | None:intergenic |
| GCTGGACCCCTCAAAGAACA+GGG | 0.672553 | 3.4:+13800388 | MS.gene78006:CDS |
| AAAGTGATGAAGCCACCACA+CGG | 0.690683 | 3.4:+13799265 | MS.gene78006:CDS |
| TCTAGTACTCCCAGTAGCAG+GGG | 0.695403 | 3.4:-13799383 | None:intergenic |
| AGGTTGTAAAGCATTCAGGA+TGG | 0.710807 | 3.4:+13799621 | MS.gene78006:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAATGAATTGA+AGG | - | chr3.4:13800920-13800939 | None:intergenic | 10.0% |
| !! | AATAAATAGAGTAAATAATT+TGG | - | chr3.4:13801607-13801626 | None:intergenic | 10.0% |
| !! | ATTAATTATCTAAAAAACAT+TGG | - | chr3.4:13801008-13801027 | None:intergenic | 10.0% |
| !! | TTATTAGAGAAATAAAAAAT+TGG | + | chr3.4:13799721-13799740 | MS.gene78006:intron | 10.0% |
| !! | TTCTTTAATAATAAAATTTG+AGG | + | chr3.4:13800709-13800728 | MS.gene78006:intron | 10.0% |
| !!! | AAGTTTTCTATTTTAAAAAT+AGG | - | chr3.4:13800756-13800775 | None:intergenic | 10.0% |
| !!! | TTCATTTTTTTTTTTTAAAG+AGG | + | chr3.4:13800924-13800943 | MS.gene78006:intron | 10.0% |
| !! | CAACAATTAAATACTTAAAT+AGG | - | chr3.4:13801203-13801222 | None:intergenic | 15.0% |
| !! | GATTATCATTATTAAATTGA+AGG | + | chr3.4:13800315-13800334 | MS.gene78006:intron | 15.0% |
| !! | TTAATTGTTGAAAAATAAGA+GGG | + | chr3.4:13801213-13801232 | MS.gene78006:intron | 15.0% |
| !! | TTTAATTGTTGAAAAATAAG+AGG | + | chr3.4:13801212-13801231 | MS.gene78006:intron | 15.0% |
| !!! | TAACTTTAAAATAAACTTAC+TGG | - | chr3.4:13802262-13802281 | None:intergenic | 15.0% |
| !!! | TTTCTTTTTCTTTTAAATAG+AGG | + | chr3.4:13800106-13800125 | MS.gene78006:intron | 15.0% |
| !! | AAACAAAATTTGCAAATGTT+AGG | - | chr3.4:13800259-13800278 | None:intergenic | 20.0% |
| !! | ACAAATTAGATAGTAAGAAT+TGG | - | chr3.4:13801365-13801384 | None:intergenic | 20.0% |
| !! | CAAATTAGATAGTAAGAATT+GGG | - | chr3.4:13801364-13801383 | None:intergenic | 20.0% |
| !! | GTTTATTGAGGTTTAAAAAA+AGG | - | chr3.4:13800969-13800988 | None:intergenic | 20.0% |
| !! | TAGACCAAAATATTATCTAT+CGG | + | chr3.4:13799952-13799971 | MS.gene78006:intron | 20.0% |
| !!! | ACAATAGAACAATTTTAAAG+TGG | - | chr3.4:13801893-13801912 | None:intergenic | 20.0% |
| !!! | ACATAAATTTTAGTGCTAAT+TGG | - | chr3.4:13799916-13799935 | None:intergenic | 20.0% |
| !!! | CATAAATTTTAGTGCTAATT+GGG | - | chr3.4:13799915-13799934 | None:intergenic | 20.0% |
| !!! | CATTCAACTTATATACATTT+TGG | - | chr3.4:13801577-13801596 | None:intergenic | 20.0% |
| !!! | TCTTTCATTTTTCGAATAAA+GGG | - | chr3.4:13801664-13801683 | None:intergenic | 20.0% |
| !!! | TTCTTTCATTTTTCGAATAA+AGG | - | chr3.4:13801665-13801684 | None:intergenic | 20.0% |
| ! | AAAATCAGTGTTATCAATAG+AGG | - | chr3.4:13801100-13801119 | None:intergenic | 25.0% |
| ! | AAAGAAAAAGGAATCTCATT+TGG | + | chr3.4:13800507-13800526 | MS.gene78006:intron | 25.0% |
| ! | AAATAGAAAACTTAAGAGTC+AGG | + | chr3.4:13800763-13800782 | MS.gene78006:intron | 25.0% |
| ! | AAGAAAAAGGAATCTCATTT+GGG | + | chr3.4:13800508-13800527 | MS.gene78006:intron | 25.0% |
| ! | ACCTCTAAATTAATGTGATA+TGG | + | chr3.4:13801825-13801844 | MS.gene78006:intron | 25.0% |
| ! | AGACCAAAATATTATCTATC+GGG | + | chr3.4:13799953-13799972 | MS.gene78006:intron | 25.0% |
| ! | CTGCATAATAAAGTTTATTG+AGG | - | chr3.4:13800981-13801000 | None:intergenic | 25.0% |
| ! | GAATGAATAAAAATGAGCTT+TGG | - | chr3.4:13800568-13800587 | None:intergenic | 25.0% |
| ! | TAAACTTGAACAACTCTATA+GGG | + | chr3.4:13799749-13799768 | MS.gene78006:intron | 25.0% |
| ! | TAAGAAAGTTAATTTCTCTG+AGG | + | chr3.4:13799546-13799565 | MS.gene78006:CDS | 25.0% |
| ! | TACGTATTAAGGTGATTATA+GGG | - | chr3.4:13800800-13800819 | None:intergenic | 25.0% |
| ! | TCCATATCACATTAATTTAG+AGG | - | chr3.4:13801829-13801848 | None:intergenic | 25.0% |
| ! | TGTAAAGTTTCTTCATTTGT+TGG | - | chr3.4:13799312-13799331 | None:intergenic | 25.0% |
| ! | TTACGTATTAAGGTGATTAT+AGG | - | chr3.4:13800801-13800820 | None:intergenic | 25.0% |
| !! | GAAATTTAACACAACTGTTT+TGG | + | chr3.4:13800542-13800561 | MS.gene78006:intron | 25.0% |
| !! | TCTGTTGATTATAACTGATT+AGG | + | chr3.4:13801513-13801532 | MS.gene78006:intron | 25.0% |
| !! | TTACCCGATAGATAATATTT+TGG | - | chr3.4:13799959-13799978 | None:intergenic | 25.0% |
| !!! | ATATGATGTTCTAAGAATGA+GGG | + | chr3.4:13801159-13801178 | MS.gene78006:intron | 25.0% |
| !!! | ATATTTTGGTCTACGATAAT+TGG | - | chr3.4:13799945-13799964 | None:intergenic | 25.0% |
| !!! | GCAAACATTTTGAGTATATT+AGG | - | chr3.4:13801342-13801361 | None:intergenic | 25.0% |
| AAGTTCGAGAATAAAGGATT+GGG | + | chr3.4:13802225-13802244 | MS.gene78006:CDS | 30.0% | |
| ACCACAAAAATAGAACAGAT+AGG | - | chr3.4:13801318-13801337 | None:intergenic | 30.0% | |
| AGAAAAAGGAATCTCATTTG+GGG | + | chr3.4:13800509-13800528 | MS.gene78006:intron | 30.0% | |
| AGCATATAATTATCGCGTAA+TGG | - | chr3.4:13802202-13802221 | None:intergenic | 30.0% | |
| ATAGTGATTGTAGCATCTAT+AGG | + | chr3.4:13800672-13800691 | MS.gene78006:intron | 30.0% | |
| CGATGTGTTGAAAAAAAATG+TGG | - | chr3.4:13800853-13800872 | None:intergenic | 30.0% | |
| CTAAACTTGAACAACTCTAT+AGG | + | chr3.4:13799748-13799767 | MS.gene78006:intron | 30.0% | |
| CTTAATTCTGTTGAAGAACA+AGG | + | chr3.4:13801547-13801566 | MS.gene78006:intron | 30.0% | |
| CTTCTTTATAATGCTCTTGA+AGG | - | chr3.4:13799647-13799666 | None:intergenic | 30.0% | |
| GCAACAGTTAAATAAGTAAG+AGG | - | chr3.4:13800173-13800192 | None:intergenic | 30.0% | |
| GGAATTACTAAATTCAGTGA+AGG | + | chr3.4:13799601-13799620 | MS.gene78006:CDS | 30.0% | |
| TAGTGATTGTAGCATCTATA+GGG | + | chr3.4:13800673-13800692 | MS.gene78006:intron | 30.0% | |
| TATAGATGCTACAATCACTA+TGG | - | chr3.4:13800673-13800692 | None:intergenic | 30.0% | |
| TCACTGAATTTAGTAATTCC+TGG | - | chr3.4:13799601-13799620 | None:intergenic | 30.0% | |
| TCATAAACAAATCTTCAGCA+TGG | - | chr3.4:13801140-13801159 | None:intergenic | 30.0% | |
| TGAGAGAAGTTTACGTATTA+AGG | - | chr3.4:13800811-13800830 | None:intergenic | 30.0% | |
| TGTTGAAAAATAAGAGGGTT+CGG | + | chr3.4:13801218-13801237 | MS.gene78006:intron | 30.0% | |
| ! | ATCCAAGCAACTTGATAATT+AGG | - | chr3.4:13802119-13802138 | None:intergenic | 30.0% |
| ! | ATTATCAAGTTGCTTGGATT+TGG | + | chr3.4:13802120-13802139 | MS.gene78006:intron | 30.0% |
| ! | GTTTCTTGCTTGACTTTTTA+CGG | - | chr3.4:13799243-13799262 | None:intergenic | 30.0% |
| ! | TCCAAGCAACTTGATAATTA+GGG | - | chr3.4:13802118-13802137 | None:intergenic | 30.0% |
| ! | TCCTTTTTCTTTACTTGAGA+CGG | - | chr3.4:13800499-13800518 | None:intergenic | 30.0% |
| ! | TCTTGTTATAGAAAAGCTTG+CGG | + | chr3.4:13799796-13799815 | MS.gene78006:CDS | 30.0% |
| ! | TTGACTTGAGCATTTACTTA+CGG | + | chr3.4:13801627-13801646 | MS.gene78006:intron | 30.0% |
| !! | GATATGATGTTCTAAGAATG+AGG | + | chr3.4:13801158-13801177 | MS.gene78006:intron | 30.0% |
| !! | TATGATGTTCTAAGAATGAG+GGG | + | chr3.4:13801160-13801179 | MS.gene78006:intron | 30.0% |
| !!! | ACCTATCTGTTCTATTTTTG+TGG | + | chr3.4:13801314-13801333 | MS.gene78006:intron | 30.0% |
| AAAAAAAATGTGGCAGAGCA+TGG | - | chr3.4:13800843-13800862 | None:intergenic | 35.0% | |
| AAGATCTATCCGAAGATGAA+GGG | + | chr3.4:13799482-13799501 | MS.gene78006:CDS | 35.0% | |
| ACAAAGAGAGGAGGAAAATT+TGG | - | chr3.4:13800285-13800304 | None:intergenic | 35.0% | |
| ACCGTCTCAAGTAAAGAAAA+AGG | + | chr3.4:13800495-13800514 | MS.gene78006:intron | 35.0% | |
| ATCTCATTTGGGGATTTAAC+AGG | + | chr3.4:13800519-13800538 | MS.gene78006:intron | 35.0% | |
| CAAGTTCGAGAATAAAGGAT+TGG | + | chr3.4:13802224-13802243 | MS.gene78006:CDS | 35.0% | |
| CTACTTCTGATTTCTTTCAG+TGG | + | chr3.4:13800205-13800224 | MS.gene78006:intron | 35.0% | |
| CTGTCAGTGTTATCAAATAG+TGG | + | chr3.4:13800587-13800606 | MS.gene78006:intron | 35.0% | |
| CTTATAAGTGTAGCGACAAA+AGG | + | chr3.4:13800072-13800091 | MS.gene78006:CDS | 35.0% | |
| GACAAAAAAGGAAAAGCTGA+TGG | + | chr3.4:13799850-13799869 | MS.gene78006:CDS | 35.0% | |
| GTGTTATCAATAGAGGATAG+TGG | - | chr3.4:13801093-13801112 | None:intergenic | 35.0% | |
| GTTCTTCAACAGAATTAAGC+AGG | - | chr3.4:13801546-13801565 | None:intergenic | 35.0% | |
| GTTGAAAAATAAGAGGGTTC+GGG | + | chr3.4:13801219-13801238 | MS.gene78006:intron | 35.0% | |
| TCTCATTTGGGGATTTAACA+GGG | + | chr3.4:13800520-13800539 | MS.gene78006:intron | 35.0% | |
| TGTCACACCTGCTAATTATT+TGG | + | chr3.4:13800032-13800051 | MS.gene78006:CDS | 35.0% | |
| TGTTCAAAGTTCATCCAGTT+TGG | - | chr3.4:13801934-13801953 | None:intergenic | 35.0% | |
| TTCTTGTGATCTGACAATAC+TGG | - | chr3.4:13799776-13799795 | None:intergenic | 35.0% | |
| TTGTTACAGCTAGCAGAAAA+GGG | + | chr3.4:13800006-13800025 | MS.gene78006:intron | 35.0% | |
| TTTAACTGTTGCTGTGAACA+TGG | + | chr3.4:13800181-13800200 | MS.gene78006:intron | 35.0% | |
| TTTCACCAAAAATAAGCACG+TGG | + | chr3.4:13799441-13799460 | MS.gene78006:CDS | 35.0% | |
| ! | TCCCTAATTATCAAGTTGCT+TGG | + | chr3.4:13802114-13802133 | MS.gene78006:intron | 35.0% |
| ! | TCGTTCAGTCAGTTTTTCAT+TGG | + | chr3.4:13801482-13801501 | MS.gene78006:intron | 35.0% |
| !! | GTTTTATACACACTTGTTGC+AGG | + | chr3.4:13800337-13800356 | MS.gene78006:intron | 35.0% |
| !! | TAGAGGATAGTGGAAAATAG+TGG | - | chr3.4:13801083-13801102 | None:intergenic | 35.0% |
| AAACAGTGAGCTGCATACAA+AGG | + | chr3.4:13800647-13800666 | MS.gene78006:intron | 40.0% | |
| AAACTCACTGGAAATAGAGG+AGG | - | chr3.4:13800880-13800899 | None:intergenic | 40.0% | |
| AACAGAATTAAGCAGGACTC+GGG | - | chr3.4:13801539-13801558 | None:intergenic | 40.0% | |
| AGAGGATGAACAACCTTCTT+GGG | + | chr3.4:13802174-13802193 | MS.gene78006:CDS | 40.0% | |
| AGATCTATCCGAAGATGAAG+GGG | + | chr3.4:13799483-13799502 | MS.gene78006:CDS | 40.0% | |
| AGCATTTACTTACGGACACT+TGG | + | chr3.4:13801635-13801654 | MS.gene78006:intron | 40.0% | |
| ATAAGTGTAGCGACAAAAGG+AGG | + | chr3.4:13800075-13800094 | MS.gene78006:CDS | 40.0% | |
| CAACAGAATTAAGCAGGACT+CGG | - | chr3.4:13801540-13801559 | None:intergenic | 40.0% | |
| CTTGTTACAGCTAGCAGAAA+AGG | + | chr3.4:13800005-13800024 | MS.gene78006:intron | 40.0% | |
| GAAGATCTATCCGAAGATGA+AGG | + | chr3.4:13799481-13799500 | MS.gene78006:CDS | 40.0% | |
| GATCAAGGGAGAGACAAAAA+AGG | + | chr3.4:13799838-13799857 | MS.gene78006:CDS | 40.0% | |
| GCATTTACTTACGGACACTT+GGG | + | chr3.4:13801636-13801655 | MS.gene78006:intron | 40.0% | |
| GCTGACAAGTTCGAGAATAA+AGG | + | chr3.4:13802219-13802238 | MS.gene78006:CDS | 40.0% | |
| GCTTAGACAAATTGCCAAAC+TGG | + | chr3.4:13801917-13801936 | MS.gene78006:intron | 40.0% | |
| GTGGAATAGCATACCATTGT+AGG | - | chr3.4:13801064-13801083 | None:intergenic | 40.0% | |
| TATAGAAAAGCTTGCGGAAG+AGG | + | chr3.4:13799802-13799821 | MS.gene78006:CDS | 40.0% | |
| TCAAAGAACAGGGATGCAAA+GGG | + | chr3.4:13800398-13800417 | MS.gene78006:CDS | 40.0% | |
| TCATACAAAGCGACAAAGAG+AGG | - | chr3.4:13800297-13800316 | None:intergenic | 40.0% | |
| TGAGCAACATGATGAGTACA+AGG | - | chr3.4:13802307-13802326 | None:intergenic | 40.0% | |
| TGGAAACTCACTGGAAATAG+AGG | - | chr3.4:13800883-13800902 | None:intergenic | 40.0% | |
| TTAACTTTCTTCTGTCCGTG+TGG | - | chr3.4:13799283-13799302 | None:intergenic | 40.0% | |
| TTCATCGGAACTGCTATCTT+GGG | - | chr3.4:13802371-13802390 | None:intergenic | 40.0% | |
| TTGCTTGGATTTGGATATGC+AGG | + | chr3.4:13802129-13802148 | MS.gene78006:intron | 40.0% | |
| TTTGCATCCCTGTTCTTTGA+GGG | - | chr3.4:13800398-13800417 | None:intergenic | 40.0% | |
| ! | AAAGCTCAAGTTGCTCAGAA+AGG | + | chr3.4:13800365-13800384 | MS.gene78006:CDS | 40.0% |
| ! | AAGCCTTCTTTTCAGCGTTA+GGG | + | chr3.4:13801418-13801437 | MS.gene78006:CDS | 40.0% |
| ! | AAGCTCAAGTTGCTCAGAAA+GGG | + | chr3.4:13800366-13800385 | MS.gene78006:CDS | 40.0% |
| ! | AGGTTGTAAAGCATTCAGGA+TGG | + | chr3.4:13799621-13799640 | MS.gene78006:CDS | 40.0% |
| ! | CTTGATAATTAGGGACACGA+TGG | - | chr3.4:13802109-13802128 | None:intergenic | 40.0% |
| ! | GAGTGTTTCTGATGAGTTGT+TGG | + | chr3.4:13799666-13799685 | MS.gene78006:CDS | 40.0% |
| ! | GTGAAGGTTGTAAAGCATTC+AGG | + | chr3.4:13799617-13799636 | MS.gene78006:CDS | 40.0% |
| ! | TGATGAGTTGTTGGTAAGCT+AGG | + | chr3.4:13799675-13799694 | MS.gene78006:intron | 40.0% |
| !! | TTCCTCCACGTGCTTATTTT+TGG | - | chr3.4:13799449-13799468 | None:intergenic | 40.0% |
| !! | TTTTAAAGAGGCAGCATGTG+AGG | + | chr3.4:13800936-13800955 | MS.gene78006:intron | 40.0% |
| AAAGTGATGAAGCCACCACA+CGG | + | chr3.4:13799265-13799284 | MS.gene78006:CDS | 45.0% | |
| AAATAGCAGACGCAGCATAG+TGG | - | chr3.4:13801040-13801059 | None:intergenic | 45.0% | |
| AGGAAGTTTGGTAGGAACCA+AGG | + | chr3.4:13799217-13799236 | MS.gene78006:CDS | 45.0% | |
| ATCACCTTTGCACCAATAGC+TGG | - | chr3.4:13801447-13801466 | None:intergenic | 45.0% | |
| CACCAAAAATAAGCACGTGG+AGG | + | chr3.4:13799444-13799463 | MS.gene78006:CDS | 45.0% | |
| CATCATGTTGCTCAACTGCA+GGG | + | chr3.4:13802313-13802332 | MS.gene78006:intron | 45.0% | |
| CGCTGAAAAGAAGGCTTCTT+TGG | - | chr3.4:13801415-13801434 | None:intergenic | 45.0% | |
| CTCAAAGAACAGGGATGCAA+AGG | + | chr3.4:13800397-13800416 | MS.gene78006:CDS | 45.0% | |
| CTTCATCGGAACTGCTATCT+TGG | - | chr3.4:13802372-13802391 | None:intergenic | 45.0% | |
| CTTCCCTAACGCTGAAAAGA+AGG | - | chr3.4:13801424-13801443 | None:intergenic | 45.0% | |
| CTTTGCATCCCTGTTCTTTG+AGG | - | chr3.4:13800399-13800418 | None:intergenic | 45.0% | |
| GAAACACAAGTGGTTGAGCA+TGG | + | chr3.4:13799178-13799197 | MS.gene78006:CDS | 45.0% | |
| GAGAGGATGAACAACCTTCT+TGG | + | chr3.4:13802173-13802192 | MS.gene78006:CDS | 45.0% | |
| GCCAATGCAAGCACAAACAA+GGG | + | chr3.4:13802151-13802170 | MS.gene78006:CDS | 45.0% | |
| GTGGCATCTATGAAGACTAG+AGG | + | chr3.4:13799409-13799428 | MS.gene78006:CDS | 45.0% | |
| TACAAAGCGACAAAGAGAGG+AGG | - | chr3.4:13800294-13800313 | None:intergenic | 45.0% | |
| TATCTATCGGGTAAGCAGTC+TGG | + | chr3.4:13799965-13799984 | MS.gene78006:intron | 45.0% | |
| TCATCATGTTGCTCAACTGC+AGG | + | chr3.4:13802312-13802331 | MS.gene78006:intron | 45.0% | |
| TGAAACCGAGAACTCTGACA+GGG | - | chr3.4:13801277-13801296 | None:intergenic | 45.0% | |
| TGAGGATGAAGATGATGAGG+AGG | + | chr3.4:13799564-13799583 | MS.gene78006:CDS | 45.0% | |
| TGCGCGTCCAAATAATTAGC+AGG | - | chr3.4:13800042-13800061 | None:intergenic | 45.0% | |
| TGGGAAAGAGGAAGTTTGGT+AGG | + | chr3.4:13799209-13799228 | MS.gene78006:CDS | 45.0% | |
| TTCTGCTACCCCTTCATCTT+CGG | - | chr3.4:13799494-13799513 | None:intergenic | 45.0% | |
| TTGCATCCCTGTTCTTTGAG+GGG | - | chr3.4:13800397-13800416 | None:intergenic | 45.0% | |
| TTTCCAGTGAGTTTCCAGTG+AGG | + | chr3.4:13800886-13800905 | MS.gene78006:intron | 45.0% | |
| ! | ACAGGGATGGTTCTATTTGG+AGG | - | chr3.4:13801260-13801279 | None:intergenic | 45.0% |
| ! | CGTCTGCTATTTGCCTACAA+TGG | + | chr3.4:13801048-13801067 | MS.gene78006:intron | 45.0% |
| ! | CTCTGAGGATGAAGATGATG+AGG | + | chr3.4:13799561-13799580 | MS.gene78006:CDS | 45.0% |
| ! | CTGACAGGGATGGTTCTATT+TGG | - | chr3.4:13801263-13801282 | None:intergenic | 45.0% |
| ! | GAAGCCTTCTTTTCAGCGTT+AGG | + | chr3.4:13801417-13801436 | MS.gene78006:CDS | 45.0% |
| ! | TCCCTTGTTTGTGCTTGCAT+TGG | - | chr3.4:13802155-13802174 | None:intergenic | 45.0% |
| ! | TGCTTGACTTTTTACGGCCT+TGG | - | chr3.4:13799237-13799256 | None:intergenic | 45.0% |
| ! | TGGTTCTATTTGGAGGAGCA+TGG | - | chr3.4:13801253-13801272 | None:intergenic | 45.0% |
| ! | TGTGGTGGCTTCATCACTTT+TGG | - | chr3.4:13799265-13799284 | None:intergenic | 45.0% |
| !!! | ATATTATTTTCTTTTTTATT+AGG | + | chr3.4:13801863-13801882 | MS.gene78006:intron | 5.0% |
| AAATAAGAGGGTTCGGGACC+TGG | + | chr3.4:13801225-13801244 | MS.gene78006:intron | 50.0% | |
| AATAAGAGGGTTCGGGACCT+GGG | + | chr3.4:13801226-13801245 | MS.gene78006:intron | 50.0% | |
| ACCATCCCTGTCAGAGTTCT+CGG | + | chr3.4:13801269-13801288 | MS.gene78006:intron | 50.0% | |
| ACTTTCTTCTGTCCGTGTGG+TGG | - | chr3.4:13799280-13799299 | None:intergenic | 50.0% | |
| ATGGAAGTGAGCTGGGAAAG+AGG | + | chr3.4:13799197-13799216 | MS.gene78006:CDS | 50.0% | |
| CATGATGAGTACAAGGCAGC+TGG | - | chr3.4:13802300-13802319 | None:intergenic | 50.0% | |
| CTCACTGGAAATAGAGGAGG+AGG | - | chr3.4:13800877-13800896 | None:intergenic | 50.0% | |
| GAAGATGAAGGGGTAGCAGA+AGG | + | chr3.4:13799493-13799512 | MS.gene78006:CDS | 50.0% | |
| GAAGCCAGCTATTGGTGCAA+AGG | + | chr3.4:13801440-13801459 | MS.gene78006:CDS | 50.0% | |
| GAGACAGAGCGCAAGATCAA+GGG | + | chr3.4:13799824-13799843 | MS.gene78006:CDS | 50.0% | |
| GAGCTGGGAAAGAGGAAGTT+TGG | + | chr3.4:13799205-13799224 | MS.gene78006:CDS | 50.0% | |
| GAGGAGGATGAAATTCAGCC+AGG | + | chr3.4:13799580-13799599 | MS.gene78006:CDS | 50.0% | |
| GGCCAATGCAAGCACAAACA+AGG | + | chr3.4:13802150-13802169 | MS.gene78006:intron | 50.0% | |
| GTCTAGTACTCCCAGTAGCA+GGG | - | chr3.4:13799387-13799406 | None:intergenic | 50.0% | |
| GTGAAACCGAGAACTCTGAC+AGG | - | chr3.4:13801278-13801297 | None:intergenic | 50.0% | |
| GTTGAGCATGGAAGTGAGCT+GGG | + | chr3.4:13799190-13799209 | MS.gene78006:CDS | 50.0% | |
| TCTAGTACTCCCAGTAGCAG+GGG | - | chr3.4:13799386-13799405 | None:intergenic | 50.0% | |
| TGAAGGATCATCCTCCTCAC+TGG | - | chr3.4:13800903-13800922 | None:intergenic | 50.0% | |
| TGCAAGCACAAACAAGGGAG+AGG | + | chr3.4:13802156-13802175 | MS.gene78006:CDS | 50.0% | |
| ! | TCAAGTTGCTCAGAAAGGGC+TGG | + | chr3.4:13800370-13800389 | MS.gene78006:CDS | 50.0% |
| !! | TACTGGGAGTACTAGACGTG+TGG | + | chr3.4:13799390-13799409 | MS.gene78006:CDS | 50.0% |
| ACCGAGAACTCTGACAGGGA+TGG | - | chr3.4:13801273-13801292 | None:intergenic | 55.0% | |
| AGACAACTGCCCCTGCTACT+GGG | + | chr3.4:13799374-13799393 | MS.gene78006:CDS | 55.0% | |
| CCAGTGAGTTTCCAGTGAGG+AGG | + | chr3.4:13800889-13800908 | MS.gene78006:intron | 55.0% | |
| CCTCCTCACTGGAAACTCAC+TGG | - | chr3.4:13800892-13800911 | None:intergenic | 55.0% | |
| CGTCTAGTACTCCCAGTAGC+AGG | - | chr3.4:13799388-13799407 | None:intergenic | 55.0% | |
| GCGTTAGGGAAGCCAGCTAT+TGG | + | chr3.4:13801432-13801451 | MS.gene78006:CDS | 55.0% | |
| GCTGGACCCCTCAAAGAACA+GGG | + | chr3.4:13800388-13800407 | MS.gene78006:CDS | 55.0% | |
| GGAGACAGAGCGCAAGATCA+AGG | + | chr3.4:13799823-13799842 | MS.gene78006:CDS | 55.0% | |
| GGTTGAGCATGGAAGTGAGC+TGG | + | chr3.4:13799189-13799208 | MS.gene78006:CDS | 55.0% | |
| ! | ATTTGGAGGAGCATGGTCCC+AGG | - | chr3.4:13801246-13801265 | None:intergenic | 55.0% |
| ! | TCGCGTAATGGAGCCCAAGA+AGG | - | chr3.4:13802190-13802209 | None:intergenic | 55.0% |
| GAGACAACTGCCCCTGCTAC+TGG | + | chr3.4:13799373-13799392 | MS.gene78006:CDS | 60.0% | |
| GGCTGGACCCCTCAAAGAAC+AGG | + | chr3.4:13800387-13800406 | MS.gene78006:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 13799169 | 13802396 | 13799169 | ID=MS.gene78006 |
| chr3.4 | mRNA | 13799169 | 13802396 | 13799169 | ID=MS.gene78006.t1;Parent=MS.gene78006 |
| chr3.4 | exon | 13799169 | 13799687 | 13799169 | ID=MS.gene78006.t1.exon1;Parent=MS.gene78006.t1 |
| chr3.4 | CDS | 13799169 | 13799687 | 13799169 | ID=cds.MS.gene78006.t1;Parent=MS.gene78006.t1 |
| chr3.4 | exon | 13799770 | 13799871 | 13799770 | ID=MS.gene78006.t1.exon2;Parent=MS.gene78006.t1 |
| chr3.4 | CDS | 13799770 | 13799871 | 13799770 | ID=cds.MS.gene78006.t1;Parent=MS.gene78006.t1 |
| chr3.4 | exon | 13800015 | 13800096 | 13800015 | ID=MS.gene78006.t1.exon3;Parent=MS.gene78006.t1 |
| chr3.4 | CDS | 13800015 | 13800096 | 13800015 | ID=cds.MS.gene78006.t1;Parent=MS.gene78006.t1 |
| chr3.4 | exon | 13800225 | 13800244 | 13800225 | ID=MS.gene78006.t1.exon4;Parent=MS.gene78006.t1 |
| chr3.4 | CDS | 13800225 | 13800244 | 13800225 | ID=cds.MS.gene78006.t1;Parent=MS.gene78006.t1 |
| chr3.4 | exon | 13800359 | 13800419 | 13800359 | ID=MS.gene78006.t1.exon5;Parent=MS.gene78006.t1 |
| chr3.4 | CDS | 13800359 | 13800419 | 13800359 | ID=cds.MS.gene78006.t1;Parent=MS.gene78006.t1 |
| chr3.4 | exon | 13801397 | 13801461 | 13801397 | ID=MS.gene78006.t1.exon6;Parent=MS.gene78006.t1 |
| chr3.4 | CDS | 13801397 | 13801461 | 13801397 | ID=cds.MS.gene78006.t1;Parent=MS.gene78006.t1 |
| chr3.4 | exon | 13802151 | 13802261 | 13802151 | ID=MS.gene78006.t1.exon7;Parent=MS.gene78006.t1 |
| chr3.4 | CDS | 13802151 | 13802261 | 13802151 | ID=cds.MS.gene78006.t1;Parent=MS.gene78006.t1 |
| chr3.4 | exon | 13802334 | 13802396 | 13802334 | ID=MS.gene78006.t1.exon8;Parent=MS.gene78006.t1 |
| chr3.4 | CDS | 13802334 | 13802396 | 13802334 | ID=cds.MS.gene78006.t1;Parent=MS.gene78006.t1 |
| Gene Sequence |
| Protein sequence |
