Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78559.t1 | XP_003613966.1 | 97.8 | 180 | 4 | 0 | 1 | 180 | 1 | 180 | 1.60E-93 | 352.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78559.t1 | Q9M015 | 49.4 | 166 | 81 | 1 | 15 | 180 | 8 | 170 | 1.5e-44 | 180.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78559.t1 | G7JWQ2 | 97.8 | 180 | 4 | 0 | 1 | 180 | 1 | 180 | 1.1e-93 | 352.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78559 | MS.gene93374 | PPI |
| MS.gene78559 | MS.gene33453 | PPI |
| MS.gene78559 | MS.gene069002 | PPI |
| MS.gene99505 | MS.gene78559 | PPI |
| MS.gene33706 | MS.gene78559 | PPI |
| MS.gene78559 | MS.gene052793 | PPI |
| MS.gene95675 | MS.gene78559 | PPI |
| MS.gene071033 | MS.gene78559 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78559.t1 | MTR_5g043190 | 97.778 | 180 | 4 | 0 | 1 | 180 | 1 | 180 | 6.75e-128 | 357 |
| MS.gene78559.t1 | MTR_4g109140 | 63.536 | 181 | 58 | 2 | 1 | 180 | 1 | 174 | 3.02e-80 | 236 |
| MS.gene78559.t1 | MTR_7g070000 | 50.000 | 180 | 80 | 2 | 1 | 180 | 1 | 170 | 1.67e-59 | 183 |
| MS.gene78559.t1 | MTR_4g014490 | 51.205 | 166 | 78 | 1 | 15 | 180 | 8 | 170 | 1.67e-59 | 183 |
| MS.gene78559.t1 | MTR_7g108775 | 39.759 | 83 | 48 | 2 | 63 | 144 | 33 | 114 | 5.36e-14 | 66.6 |
| MS.gene78559.t1 | MTR_7g108775 | 39.759 | 83 | 48 | 2 | 63 | 144 | 33 | 114 | 6.24e-14 | 67.0 |
| MS.gene78559.t1 | MTR_8g085590 | 32.432 | 111 | 71 | 4 | 63 | 171 | 33 | 141 | 1.44e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78559.t1 | AT2G03350 | 75.141 | 177 | 42 | 1 | 1 | 177 | 1 | 175 | 2.57e-95 | 274 |
| MS.gene78559.t1 | AT5G37070 | 48.889 | 180 | 82 | 2 | 1 | 180 | 1 | 170 | 8.19e-61 | 186 |
| MS.gene78559.t1 | AT3G08890 | 48.333 | 180 | 83 | 2 | 1 | 180 | 1 | 170 | 3.47e-59 | 182 |
| MS.gene78559.t1 | AT3G08890 | 48.333 | 180 | 83 | 2 | 1 | 180 | 1 | 170 | 3.47e-59 | 182 |
| MS.gene78559.t1 | AT5G01610 | 49.398 | 166 | 81 | 1 | 15 | 180 | 8 | 170 | 1.95e-58 | 181 |
| MS.gene78559.t1 | AT5G01610 | 49.398 | 166 | 81 | 1 | 15 | 180 | 8 | 170 | 1.95e-58 | 181 |
| MS.gene78559.t1 | AT4G02370 | 29.703 | 101 | 67 | 2 | 64 | 163 | 35 | 132 | 3.46e-13 | 64.7 |
| MS.gene78559.t1 | AT1G02816 | 25.893 | 112 | 77 | 3 | 64 | 172 | 35 | 143 | 5.48e-13 | 63.9 |
| MS.gene78559.t1 | AT5G16380 | 26.562 | 128 | 90 | 3 | 49 | 174 | 19 | 144 | 2.05e-12 | 63.2 |
Find 44 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGTTAGTGAATTCTTCTT+TGG | 0.249782 | 5.2:+32910869 | None:intergenic |
| GTTACAAATCTGATAAGATT+TGG | 0.265998 | 5.2:-32908096 | MS.gene78559:CDS |
| GGGAAAGCTTTCACAAATAG+AGG | 0.335889 | 5.2:-32908173 | MS.gene78559:CDS |
| TGAAAACAAAAGTTCTTGTA+TGG | 0.338172 | 5.2:-32908147 | MS.gene78559:CDS |
| AAAGTGGCAAGCTTGAAAAT+TGG | 0.343093 | 5.2:-32910921 | MS.gene78559:CDS |
| TTACAAATCTGATAAGATTT+GGG | 0.365699 | 5.2:-32908095 | MS.gene78559:CDS |
| AAAAGTTCTTGTATGGGTTA+AGG | 0.386610 | 5.2:-32908140 | MS.gene78559:CDS |
| CTCAAGCACTGTTGAAGAAA+AGG | 0.392322 | 5.2:-32909436 | MS.gene78559:CDS |
| AAATTGGACTTGGAGATTCA+TGG | 0.412387 | 5.2:-32910905 | MS.gene78559:CDS |
| TTATAATCTTTGAGGAGATC+TGG | 0.426726 | 5.2:+32908352 | None:intergenic |
| CTGTTGAAGAAAAGGCCAAA+TGG | 0.427835 | 5.2:-32909428 | MS.gene78559:CDS |
| TAGTTTGTTGAAAACCCATT+TGG | 0.430521 | 5.2:+32909413 | None:intergenic |
| TGTTGAAGAAAAGGCCAAAT+GGG | 0.457433 | 5.2:-32909427 | MS.gene78559:CDS |
| GAGTCAAAGGTGTTCTTACA+AGG | 0.462275 | 5.2:-32908195 | MS.gene78559:CDS |
| GGTGTATCGTAAGCATCCTT+TGG | 0.469228 | 5.2:+32908046 | None:intergenic |
| TGCATGTGAGGTCAGCTTCA+AGG | 0.469233 | 5.2:-32908245 | MS.gene78559:CDS |
| TGTAAGAACACCTTTGACTC+GGG | 0.474227 | 5.2:+32908198 | None:intergenic |
| GCAAGCTTGAAAATTGGACT+TGG | 0.490390 | 5.2:-32910915 | MS.gene78559:CDS |
| AAGATTATAATTTACCGCTC+GGG | 0.497684 | 5.2:-32908339 | MS.gene78559:CDS |
| GTAGACAATCAGCTTACCCT+TGG | 0.505031 | 5.2:+32908276 | None:intergenic |
| CCCACAGGTAAGCCACAGAA+AGG | 0.506420 | 5.2:-32908379 | MS.gene78559:intron |
| AAAGATTATAATTTACCGCT+CGG | 0.506636 | 5.2:-32908340 | MS.gene78559:CDS |
| TGATACTCTAATAGCATCAC+GGG | 0.514685 | 5.2:+32908024 | None:intergenic |
| GATAAGATTTGGGTTACTGC+TGG | 0.516200 | 5.2:-32908085 | MS.gene78559:CDS |
| GCGGTAAATTATAATCTTTG+AGG | 0.520183 | 5.2:+32908344 | None:intergenic |
| GAAAACAAAAGTTCTTGTAT+GGG | 0.524444 | 5.2:-32908146 | MS.gene78559:CDS |
| GGAGAAAGCTCTTACTAAAG+TGG | 0.540620 | 5.2:-32910937 | MS.gene78559:CDS |
| TTGTAAGAACACCTTTGACT+CGG | 0.560711 | 5.2:+32908197 | None:intergenic |
| CTGATACTCTAATAGCATCA+CGG | 0.563344 | 5.2:+32908023 | None:intergenic |
| CGATATGCAACCCGAGTCAA+AGG | 0.564195 | 5.2:-32908208 | MS.gene78559:CDS |
| CTACTTACCATCTGCATGTG+AGG | 0.574237 | 5.2:-32908257 | MS.gene78559:CDS |
| CTGCTGGTGTTAAGAAGTCA+AGG | 0.578489 | 5.2:-32908069 | MS.gene78559:CDS |
| GTGACAAGTGTGACAGTAGA+GGG | 0.581696 | 5.2:-32908118 | MS.gene78559:CDS |
| AGATCTGGTAAACCTTTCTG+TGG | 0.597603 | 5.2:+32908367 | None:intergenic |
| GTCAAAGGTGTTCTTACAAG+GGG | 0.598086 | 5.2:-32908193 | MS.gene78559:CDS |
| GGAAAGCTTTCACAAATAGA+GGG | 0.603339 | 5.2:-32908172 | MS.gene78559:CDS |
| AAGCTGACCTCACATGCAGA+TGG | 0.613619 | 5.2:+32908250 | None:intergenic |
| GGTGACAAGTGTGACAGTAG+AGG | 0.615714 | 5.2:-32908119 | MS.gene78559:CDS |
| TATGAGTTTGACGAAACCAA+GGG | 0.622312 | 5.2:-32908292 | MS.gene78559:CDS |
| TTATGAGTTTGACGAAACCA+AGG | 0.622560 | 5.2:-32908293 | MS.gene78559:CDS |
| TGTTAAGAAGTCAAGGCCAA+AGG | 0.647193 | 5.2:-32908062 | MS.gene78559:CDS |
| AGTCAAAGGTGTTCTTACAA+GGG | 0.654060 | 5.2:-32908194 | MS.gene78559:CDS |
| GGTTGCATATCGCAGTACAG+AGG | 0.698294 | 5.2:+32908219 | None:intergenic |
| GATACTCTAATAGCATCACG+GGG | 0.785323 | 5.2:+32908025 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGGTATATTAAAAAAA+TGG | - | chr5.2:32908790-32908809 | MS.gene78559:intron | 10.0% |
| !! | TGAGTTTAAATTTAAATATC+AGG | - | chr5.2:32909977-32909996 | MS.gene78559:intron | 15.0% |
| !! | TTCTCAATATTACTAATAAA+TGG | + | chr5.2:32909362-32909381 | None:intergenic | 15.0% |
| !!! | TAATTTATTTATTTTTGTCC+TGG | - | chr5.2:32908938-32908957 | MS.gene78559:intron | 15.0% |
| !!! | TACCAAAAAAAACTATTTTT+TGG | + | chr5.2:32908779-32908798 | None:intergenic | 15.0% |
| !!! | TTGTTATTTCATAAATTAGT+GGG | + | chr5.2:32910083-32910102 | None:intergenic | 15.0% |
| !!! | TTTGTTATTTCATAAATTAG+TGG | + | chr5.2:32910084-32910103 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTGGTACAAA+GGG | - | chr5.2:32910043-32910062 | MS.gene78559:intron | 15.0% |
| !!! | TTTTTTTTTTTTTGGTACAA+AGG | - | chr5.2:32910042-32910061 | MS.gene78559:intron | 15.0% |
| !! | ATTGATGTTCCTTAATTTAA+GGG | + | chr5.2:32910112-32910131 | None:intergenic | 20.0% |
| !! | TTAAAATCAATGAAAAAACC+TGG | - | chr5.2:32910174-32910193 | MS.gene78559:intron | 20.0% |
| !! | TTACAAATCTGATAAGATTT+GGG | - | chr5.2:32910859-32910878 | MS.gene78559:CDS | 20.0% |
| !!! | ATACATTTTATTACGCTTTA+TGG | + | chr5.2:32909401-32909420 | None:intergenic | 20.0% |
| !!! | GACCAAAAAATAGTTTTTTT+TGG | - | chr5.2:32908774-32908793 | MS.gene78559:intron | 20.0% |
| !!! | TATTAAAAAAATGGCCTTTT+TGG | - | chr5.2:32908799-32908818 | MS.gene78559:intron | 20.0% |
| !!! | TCGAGCAATTTTTTTTTTTT+TGG | - | chr5.2:32910034-32910053 | MS.gene78559:intron | 20.0% |
| !!! | TTTGATGTTTCTTTAGTTTA+GGG | - | chr5.2:32908698-32908717 | MS.gene78559:intron | 20.0% |
| !!! | TTTTGATGTTTCTTTAGTTT+AGG | - | chr5.2:32908697-32908716 | MS.gene78559:intron | 20.0% |
| ! | AAAGATTATAATTTACCGCT+CGG | - | chr5.2:32910614-32910633 | MS.gene78559:intron | 25.0% |
| ! | AATCTTTCAAATCAATATCC+AGG | + | chr5.2:32910195-32910214 | None:intergenic | 25.0% |
| ! | AATTTCATTGAGAGATTACA+AGG | - | chr5.2:32908998-32909017 | MS.gene78559:intron | 25.0% |
| ! | ATTTCATTGAGAGATTACAA+GGG | - | chr5.2:32908999-32909018 | MS.gene78559:intron | 25.0% |
| ! | GAAAACAAAAGTTCTTGTAT+GGG | - | chr5.2:32910808-32910827 | MS.gene78559:intron | 25.0% |
| ! | GATTGATGTTCCTTAATTTA+AGG | + | chr5.2:32910113-32910132 | None:intergenic | 25.0% |
| ! | GTTACAAATCTGATAAGATT+TGG | - | chr5.2:32910858-32910877 | MS.gene78559:CDS | 25.0% |
| ! | TATGATCTTCAAATTTGCAA+GGG | + | chr5.2:32910362-32910381 | None:intergenic | 25.0% |
| ! | TATTCCTCAAAGATTTGAAT+AGG | - | chr5.2:32908337-32908356 | MS.gene78559:CDS | 25.0% |
| ! | TGAAAACAAAAGTTCTTGTA+TGG | - | chr5.2:32910807-32910826 | MS.gene78559:intron | 25.0% |
| ! | TTATGATCTTCAAATTTGCA+AGG | + | chr5.2:32910363-32910382 | None:intergenic | 25.0% |
| ! | TTCCATAAATGAATATGCAA+TGG | - | chr5.2:32908729-32908748 | MS.gene78559:intron | 25.0% |
| ! | TTGATTGTAGTGCTAAAATT+TGG | - | chr5.2:32910255-32910274 | MS.gene78559:intron | 25.0% |
| ! | TTTCAACAAACTAAAAGGTA+TGG | - | chr5.2:32909551-32909570 | MS.gene78559:intron | 25.0% |
| !! | AAATTTGATTCCTCTGAAAA+TGG | + | chr5.2:32908384-32908403 | None:intergenic | 25.0% |
| !! | TCATAACAGATTATGTTTTG+AGG | + | chr5.2:32910647-32910666 | None:intergenic | 25.0% |
| !! | TTTTATTACGCTTTATGGTT+TGG | + | chr5.2:32909396-32909415 | None:intergenic | 25.0% |
| !! | TTTTTACCTTTCTAAGTCAT+AGG | - | chr5.2:32908890-32908909 | MS.gene78559:intron | 25.0% |
| !!! | ACAATGTTTTTGCTGATATA+AGG | - | chr5.2:32909475-32909494 | MS.gene78559:intron | 25.0% |
| !!! | AGAATTGATTGATTCTGTTT+TGG | - | chr5.2:32908652-32908671 | MS.gene78559:intron | 25.0% |
| !!! | ATTTTAGCACTACAATCAAA+AGG | + | chr5.2:32910254-32910273 | None:intergenic | 25.0% |
| !!! | TCCATGATGTTATTTCTAAA+TGG | - | chr5.2:32909115-32909134 | MS.gene78559:intron | 25.0% |
| AAGATTATAATTTACCGCTC+GGG | - | chr5.2:32910615-32910634 | MS.gene78559:intron | 30.0% | |
| AGCAGTCTATTTGAATCAAT+TGG | + | chr5.2:32909637-32909656 | None:intergenic | 30.0% | |
| ATCTCCTATTCAAATCTTTG+AGG | + | chr5.2:32908344-32908363 | None:intergenic | 30.0% | |
| CAAATCAGTCCCTTAAATTA+AGG | - | chr5.2:32910100-32910119 | MS.gene78559:intron | 30.0% | |
| CATGAAAAACTTATTATCGC+AGG | + | chr5.2:32909745-32909764 | None:intergenic | 30.0% | |
| CTAAATTAGTCCACCTAAAT+TGG | - | chr5.2:32908418-32908437 | MS.gene78559:intron | 30.0% | |
| CTAGGCAGTTATTATTTCAA+TGG | - | chr5.2:32910479-32910498 | MS.gene78559:intron | 30.0% | |
| CTTGATTGATGCAAAATTCT+TGG | + | chr5.2:32909214-32909233 | None:intergenic | 30.0% | |
| GAAAAAATGCATAAACTCAC+TGG | + | chr5.2:32909599-32909618 | None:intergenic | 30.0% | |
| GATGTTAGTGAATTCTTCTT+TGG | + | chr5.2:32908088-32908107 | None:intergenic | 30.0% | |
| GCCATTTAGAAATAACATCA+TGG | + | chr5.2:32909119-32909138 | None:intergenic | 30.0% | |
| GCGGTAAATTATAATCTTTG+AGG | + | chr5.2:32910613-32910632 | None:intergenic | 30.0% | |
| GTCCATTGCATATTCATTTA+TGG | + | chr5.2:32908734-32908753 | None:intergenic | 30.0% | |
| TGATTCCTCTAAACGAATTT+GGG | + | chr5.2:32908518-32908537 | None:intergenic | 30.0% | |
| TTGATTCCTCTAAACGAATT+TGG | + | chr5.2:32908519-32908538 | None:intergenic | 30.0% | |
| ! | AAAAGTTCTTGTATGGGTTA+AGG | - | chr5.2:32910814-32910833 | MS.gene78559:intron | 30.0% |
| ! | AGAGGAATCAAATTGATTCT+TGG | - | chr5.2:32908528-32908547 | MS.gene78559:intron | 30.0% |
| ! | TCTGAAAGATCCAAATTTTC+AGG | + | chr5.2:32908843-32908862 | None:intergenic | 30.0% |
| ! | TGACTTGACAAATTGATTCT+TGG | - | chr5.2:32908624-32908643 | MS.gene78559:intron | 30.0% |
| ! | TGGGTTTTCAACAAACTAAA+AGG | - | chr5.2:32909546-32909565 | MS.gene78559:intron | 30.0% |
| ! | TTATAATCTTTGAGGAGATC+TGG | + | chr5.2:32910605-32910624 | None:intergenic | 30.0% |
| ! | TTTGAAACAACCTTGGATTT+GGG | - | chr5.2:32908273-32908292 | MS.gene78559:CDS | 30.0% |
| !! | AATGAATGAAGTCATTTTCC+AGG | + | chr5.2:32908959-32908978 | None:intergenic | 30.0% |
| !! | ATTGTTTGTTTTCAAACTGC+AGG | + | chr5.2:32909035-32909054 | None:intergenic | 30.0% |
| !! | CTTGGTCTTTGAAATTGTAA+GGG | - | chr5.2:32910011-32910030 | MS.gene78559:intron | 30.0% |
| !! | TAGTTTGTTGAAAACCCATT+TGG | + | chr5.2:32909544-32909563 | None:intergenic | 30.0% |
| !! | TCTGTTTTGGATGTGAAATT+GGG | - | chr5.2:32908665-32908684 | MS.gene78559:intron | 30.0% |
| !! | TCTTGGTCTTTGAAATTGTA+AGG | - | chr5.2:32910010-32910029 | MS.gene78559:intron | 30.0% |
| !! | TTCTGTTTTGGATGTGAAAT+TGG | - | chr5.2:32908664-32908683 | MS.gene78559:intron | 30.0% |
| !! | TTGTTTGTTTTCAAACTGCA+GGG | + | chr5.2:32909034-32909053 | None:intergenic | 30.0% |
| !!! | TCTTTTTTTCCCCTTTAATG+TGG | - | chr5.2:32908165-32908184 | MS.gene78559:CDS | 30.0% |
| AAAGTGGCAAGCTTGAAAAT+TGG | - | chr5.2:32908033-32908052 | MS.gene78559:CDS | 35.0% | |
| AAATTGGACTTGGAGATTCA+TGG | - | chr5.2:32908049-32908068 | MS.gene78559:CDS | 35.0% | |
| AAGCTACATATGACATGTAG+AGG | + | chr5.2:32909148-32909167 | None:intergenic | 35.0% | |
| AATGGAAACTTCCCATGAAA+AGG | + | chr5.2:32908214-32908233 | None:intergenic | 35.0% | |
| ACCCAAAAAAGCCACATTAA+AGG | + | chr5.2:32908179-32908198 | None:intergenic | 35.0% | |
| ACGAAAACCATTCGTTTGAA+TGG | - | chr5.2:32909429-32909448 | MS.gene78559:CDS | 35.0% | |
| AGTAACACTAACACCAAACA+GGG | + | chr5.2:32909455-32909474 | None:intergenic | 35.0% | |
| AGTCACATCTCTGTAACTTA+TGG | + | chr5.2:32910428-32910447 | None:intergenic | 35.0% | |
| ATAAACTCACTGGAACATCT+AGG | + | chr5.2:32909589-32909608 | None:intergenic | 35.0% | |
| ATATGACATGTAGAGGATCA+TGG | + | chr5.2:32909141-32909160 | None:intergenic | 35.0% | |
| ATGGAAACTTCCCATGAAAA+GGG | + | chr5.2:32908213-32908232 | None:intergenic | 35.0% | |
| ATGTGTTGTCTACTACTCTA+TGG | - | chr5.2:32909314-32909333 | MS.gene78559:intron | 35.0% | |
| CCAAAAAAGCCACATTAAAG+GGG | + | chr5.2:32908177-32908196 | None:intergenic | 35.0% | |
| CCCAAAAAAGCCACATTAAA+GGG | + | chr5.2:32908178-32908197 | None:intergenic | 35.0% | |
| CTGATACTCTAATAGCATCA+CGG | + | chr5.2:32910934-32910953 | None:intergenic | 35.0% | |
| GGAAAGCTTTCACAAATAGA+GGG | - | chr5.2:32910782-32910801 | MS.gene78559:intron | 35.0% | |
| GTTGAATGGACCTGAAAATT+TGG | - | chr5.2:32908830-32908849 | MS.gene78559:intron | 35.0% | |
| GTTGTTCCTATGACTTAGAA+AGG | + | chr5.2:32908899-32908918 | None:intergenic | 35.0% | |
| TAAACTCACTGGAACATCTA+GGG | + | chr5.2:32909588-32909607 | None:intergenic | 35.0% | |
| TAAATGGATGATGACTCACT+TGG | + | chr5.2:32909346-32909365 | None:intergenic | 35.0% | |
| TAGGAGATTAAGTGTGTGTT+TGG | - | chr5.2:32908356-32908375 | MS.gene78559:CDS | 35.0% | |
| TAGTAACACTAACACCAAAC+AGG | + | chr5.2:32909456-32909475 | None:intergenic | 35.0% | |
| TATCAGGTTAATGAGCATCT+TGG | - | chr5.2:32909993-32910012 | MS.gene78559:intron | 35.0% | |
| TATGAGTTTGACGAAACCAA+GGG | - | chr5.2:32910662-32910681 | MS.gene78559:intron | 35.0% | |
| TGATACTCTAATAGCATCAC+GGG | + | chr5.2:32910933-32910952 | None:intergenic | 35.0% | |
| TGTTGAAGAAAAGGCCAAAT+GGG | - | chr5.2:32909527-32909546 | MS.gene78559:intron | 35.0% | |
| TTATGAGTTTGACGAAACCA+AGG | - | chr5.2:32910661-32910680 | MS.gene78559:intron | 35.0% | |
| TTCAACACAGACAACCAAAA+AGG | + | chr5.2:32908816-32908835 | None:intergenic | 35.0% | |
| TTCATGGGAAGTTTCCATTT+GGG | - | chr5.2:32908215-32908234 | MS.gene78559:CDS | 35.0% | |
| TTGTAAGAACACCTTTGACT+CGG | + | chr5.2:32910760-32910779 | None:intergenic | 35.0% | |
| TTTCACCTAGTTTAGCATGA+CGG | + | chr5.2:32909665-32909684 | None:intergenic | 35.0% | |
| TTTCATGGGAAGTTTCCATT+TGG | - | chr5.2:32908214-32908233 | MS.gene78559:CDS | 35.0% | |
| ! | CATATAAGAGAAAGTGTGTC+AGG | + | chr5.2:32909800-32909819 | None:intergenic | 35.0% |
| ! | GTTTGAAACAACCTTGGATT+TGG | - | chr5.2:32908272-32908291 | MS.gene78559:CDS | 35.0% |
| ! | TTGCTTGTTTGAAACAACCT+TGG | - | chr5.2:32908266-32908285 | MS.gene78559:CDS | 35.0% |
| !! | AGTCAAAGGTGTTCTTACAA+GGG | - | chr5.2:32910760-32910779 | MS.gene78559:intron | 35.0% |
| !! | TGTTTGTTTTCAAACTGCAG+GGG | + | chr5.2:32909033-32909052 | None:intergenic | 35.0% |
| !! | TTTTGGTTGTCTGTGTTGAA+TGG | - | chr5.2:32908816-32908835 | MS.gene78559:intron | 35.0% |
| !!! | CCCTTTAATGTGGCTTTTTT+GGG | - | chr5.2:32908175-32908194 | MS.gene78559:CDS | 35.0% |
| AAAAGGGTGAAGTGAGAATG+AGG | + | chr5.2:32909777-32909796 | None:intergenic | 40.0% | |
| AAACAACCTTGGATTTGGGT+TGG | - | chr5.2:32908277-32908296 | MS.gene78559:CDS | 40.0% | |
| ACAATGTGAAGAAACCAGCT+GGG | + | chr5.2:32909911-32909930 | None:intergenic | 40.0% | |
| AGATCTGGTAAACCTTTCTG+TGG | + | chr5.2:32910590-32910609 | None:intergenic | 40.0% | |
| CTGTTGAAGAAAAGGCCAAA+TGG | - | chr5.2:32909526-32909545 | MS.gene78559:intron | 40.0% | |
| GATACTCTAATAGCATCACG+GGG | + | chr5.2:32910932-32910951 | None:intergenic | 40.0% | |
| GCAAGCTTGAAAATTGGACT+TGG | - | chr5.2:32908039-32908058 | MS.gene78559:CDS | 40.0% | |
| GGAGAAAGCTCTTACTAAAG+TGG | - | chr5.2:32908017-32908036 | MS.gene78559:CDS | 40.0% | |
| GGGAAAGCTTTCACAAATAG+AGG | - | chr5.2:32910781-32910800 | MS.gene78559:intron | 40.0% | |
| GGTTTGAGAGATCTAAAGGA+AGG | - | chr5.2:32908237-32908256 | MS.gene78559:CDS | 40.0% | |
| GTCTACACGCAAAAATGACT+AGG | - | chr5.2:32910461-32910480 | MS.gene78559:intron | 40.0% | |
| TAGATCTCTCAAACCCCAAA+TGG | + | chr5.2:32908232-32908251 | None:intergenic | 40.0% | |
| TCATGGGAAGTTTCCATTTG+GGG | - | chr5.2:32908216-32908235 | MS.gene78559:CDS | 40.0% | |
| TCCTCTAAACGAATTTGGGT+TGG | + | chr5.2:32908514-32908533 | None:intergenic | 40.0% | |
| TGTAAGAACACCTTTGACTC+GGG | + | chr5.2:32910759-32910778 | None:intergenic | 40.0% | |
| TGTTAAGAAGTCAAGGCCAA+AGG | - | chr5.2:32910892-32910911 | MS.gene78559:CDS | 40.0% | |
| TTAGAGAAGAGTGAACTCAG+AGG | + | chr5.2:32909887-32909906 | None:intergenic | 40.0% | |
| TTGGGGTTTGAGAGATCTAA+AGG | - | chr5.2:32908233-32908252 | MS.gene78559:CDS | 40.0% | |
| ! | AAGTACCGTCATGCTAAACT+AGG | - | chr5.2:32909657-32909676 | MS.gene78559:intron | 40.0% |
| ! | AGAGAAAGTGTGTCAGGAAA+AGG | + | chr5.2:32909794-32909813 | None:intergenic | 40.0% |
| ! | CTCAAGCACTGTTGAAGAAA+AGG | - | chr5.2:32909518-32909537 | MS.gene78559:intron | 40.0% |
| ! | GAGAAAGTGTGTCAGGAAAA+GGG | + | chr5.2:32909793-32909812 | None:intergenic | 40.0% |
| ! | GATAAGATTTGGGTTACTGC+TGG | - | chr5.2:32910869-32910888 | MS.gene78559:CDS | 40.0% |
| !! | GAGTCAAAGGTGTTCTTACA+AGG | - | chr5.2:32910759-32910778 | MS.gene78559:intron | 40.0% |
| !! | GTCAAAGGTGTTCTTACAAG+GGG | - | chr5.2:32910761-32910780 | MS.gene78559:intron | 40.0% |
| !! | GTGTTTGGTTCCATTTTCAG+AGG | - | chr5.2:32908371-32908390 | MS.gene78559:CDS | 40.0% |
| !! | GTTAGTCTGACCCTTTTCAT+GGG | - | chr5.2:32908200-32908219 | MS.gene78559:CDS | 40.0% |
| !! | TGTTAGTCTGACCCTTTTCA+TGG | - | chr5.2:32908199-32908218 | MS.gene78559:CDS | 40.0% |
| !!! | CCCCTTTAATGTGGCTTTTT+TGG | - | chr5.2:32908174-32908193 | MS.gene78559:CDS | 40.0% |
| AACAGGGCCATTCAAACGAA+TGG | + | chr5.2:32909439-32909458 | None:intergenic | 45.0% | |
| CAAGTACCAACCCAAATCCA+AGG | + | chr5.2:32908286-32908305 | None:intergenic | 45.0% | |
| CACAATGTGAAGAAACCAGC+TGG | + | chr5.2:32909912-32909931 | None:intergenic | 45.0% | |
| CTACTTACCATCTGCATGTG+AGG | - | chr5.2:32910697-32910716 | MS.gene78559:intron | 45.0% | |
| GCCAACCCAAATTCGTTTAG+AGG | - | chr5.2:32908510-32908529 | MS.gene78559:intron | 45.0% | |
| GGTGTATCGTAAGCATCCTT+TGG | + | chr5.2:32910911-32910930 | None:intergenic | 45.0% | |
| GTAGACAATCAGCTTACCCT+TGG | + | chr5.2:32910681-32910700 | None:intergenic | 45.0% | |
| GTCTCAGGTTTGATTCTCTC+CGG | + | chr5.2:32908446-32908465 | None:intergenic | 45.0% | |
| GTGACAAGTGTGACAGTAGA+GGG | - | chr5.2:32910836-32910855 | MS.gene78559:intron | 45.0% | |
| TAGTCCACCTAAATTGGCAC+CGG | - | chr5.2:32908424-32908443 | MS.gene78559:intron | 45.0% | |
| TTCGTTTGAATGGCCCTGTT+TGG | - | chr5.2:32909439-32909458 | MS.gene78559:CDS | 45.0% | |
| ! | ATTCTCTCCGGTGCCAATTT+AGG | + | chr5.2:32908434-32908453 | None:intergenic | 45.0% |
| ! | CTGCTGGTGTTAAGAAGTCA+AGG | - | chr5.2:32910885-32910904 | MS.gene78559:CDS | 45.0% |
| !! | CTTGGATTTGGGTTGGTACT+TGG | - | chr5.2:32908284-32908303 | MS.gene78559:CDS | 45.0% |
| !! | TTTTGAGGAAATAGCCCGAG+CGG | + | chr5.2:32910632-32910651 | None:intergenic | 45.0% |
| AAGCTGACCTCACATGCAGA+TGG | + | chr5.2:32910707-32910726 | None:intergenic | 50.0% | |
| ACCTTTCTGTGGCTTACCTG+TGG | + | chr5.2:32910579-32910598 | None:intergenic | 50.0% | |
| CACTCTTCTCTAAACCCAGC+TGG | - | chr5.2:32909894-32909913 | MS.gene78559:intron | 50.0% | |
| CCTTTCTGTGGCTTACCTGT+GGG | + | chr5.2:32910578-32910597 | None:intergenic | 50.0% | |
| CGATATGCAACCCGAGTCAA+AGG | - | chr5.2:32910746-32910765 | MS.gene78559:intron | 50.0% | |
| GAATCAAACCTGAGACCTCG+AGG | - | chr5.2:32908450-32908469 | MS.gene78559:intron | 50.0% | |
| GGGTGAAGTGAGAATGAGGT+AGG | + | chr5.2:32909773-32909792 | None:intergenic | 50.0% | |
| GGTGACAAGTGTGACAGTAG+AGG | - | chr5.2:32910835-32910854 | MS.gene78559:intron | 50.0% | |
| GGTTGCATATCGCAGTACAG+AGG | + | chr5.2:32910738-32910757 | None:intergenic | 50.0% | |
| TGCATGTGAGGTCAGCTTCA+AGG | - | chr5.2:32910709-32910728 | MS.gene78559:intron | 50.0% | |
| ! | AGAGTGAACTCAGAGGTGCA+TGG | + | chr5.2:32909880-32909899 | None:intergenic | 50.0% |
| !! | CTAGTATTGGCTTGGGACCT+GGG | + | chr5.2:32908487-32908506 | None:intergenic | 50.0% |
| !! | TGGCCTGCTAGTATTGGCTT+GGG | + | chr5.2:32908494-32908513 | None:intergenic | 50.0% |
| !! | TTGGCCTGCTAGTATTGGCT+TGG | + | chr5.2:32908495-32908514 | None:intergenic | 50.0% |
| !! | TTGGGTTGGCCTGCTAGTAT+TGG | + | chr5.2:32908500-32908519 | None:intergenic | 50.0% |
| CCCACAGGTAAGCCACAGAA+AGG | - | chr5.2:32910575-32910594 | MS.gene78559:intron | 55.0% | |
| GGTCCCAAGCCAATACTAGC+AGG | - | chr5.2:32908488-32908507 | MS.gene78559:intron | 55.0% | |
| TCAAACCTGAGACCTCGAGG+AGG | - | chr5.2:32908453-32908472 | MS.gene78559:intron | 55.0% | |
| TCTGTGGCTTACCTGTGGGA+AGG | + | chr5.2:32910574-32910593 | None:intergenic | 55.0% | |
| ! | CTCTCCGGTGCCAATTTAGG+TGG | + | chr5.2:32908431-32908450 | None:intergenic | 55.0% |
| ! | TGCTCTGAATGCCTTCCCAC+AGG | - | chr5.2:32910560-32910579 | MS.gene78559:intron | 55.0% |
| !! | GCTAGTATTGGCTTGGGACC+TGG | + | chr5.2:32908488-32908507 | None:intergenic | 55.0% |
| GTACTCCTCCTCGAGGTCTC+AGG | + | chr5.2:32908461-32908480 | None:intergenic | 60.0% | |
| ! | TCGAGGAGGAGTACACTCCC+AGG | - | chr5.2:32908467-32908486 | MS.gene78559:intron | 60.0% |
| ! | TGGGAGTGTACTCCTCCTCG+AGG | + | chr5.2:32908468-32908487 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 32908015 | 32910961 | 32908015 | ID=MS.gene78559 |
| chr5.2 | mRNA | 32908015 | 32910961 | 32908015 | ID=MS.gene78559.t1;Parent=MS.gene78559 |
| chr5.2 | exon | 32910854 | 32910961 | 32910854 | ID=MS.gene78559.t1.exon1;Parent=MS.gene78559.t1 |
| chr5.2 | CDS | 32910854 | 32910961 | 32910854 | ID=cds.MS.gene78559.t1;Parent=MS.gene78559.t1 |
| chr5.2 | exon | 32909409 | 32909463 | 32909409 | ID=MS.gene78559.t1.exon2;Parent=MS.gene78559.t1 |
| chr5.2 | CDS | 32909409 | 32909463 | 32909409 | ID=cds.MS.gene78559.t1;Parent=MS.gene78559.t1 |
| chr5.2 | exon | 32908015 | 32908394 | 32908015 | ID=MS.gene78559.t1.exon3;Parent=MS.gene78559.t1 |
| chr5.2 | CDS | 32908015 | 32908394 | 32908015 | ID=cds.MS.gene78559.t1;Parent=MS.gene78559.t1 |
| Gene Sequence |
| Protein sequence |
