Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78700.t1 | XP_003602965.1 | 100 | 228 | 0 | 0 | 1 | 228 | 1 | 228 | 4.00E-126 | 460.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78700.t1 | Q6DFI2 | 37.3 | 169 | 98 | 4 | 1 | 166 | 1 | 164 | 3.4e-25 | 116.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78700.t1 | G7J5Q0 | 100.0 | 228 | 0 | 0 | 1 | 228 | 1 | 228 | 2.9e-126 | 460.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78700 | MS.gene016301 | PPI |
| MS.gene006721 | MS.gene78700 | PPI |
| MS.gene066933 | MS.gene78700 | PPI |
| MS.gene045454 | MS.gene78700 | PPI |
| MS.gene045457 | MS.gene78700 | PPI |
| MS.gene78700 | MS.gene031579 | PPI |
| MS.gene058354 | MS.gene78700 | PPI |
| MS.gene59873 | MS.gene78700 | PPI |
| MS.gene99541 | MS.gene78700 | PPI |
| MS.gene73833 | MS.gene78700 | PPI |
| MS.gene018045 | MS.gene78700 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78700.t1 | MTR_3g100940 | 100.000 | 228 | 0 | 0 | 1 | 228 | 1 | 228 | 9.92e-170 | 466 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78700.t1 | AT1G47640 | 87.225 | 227 | 29 | 0 | 1 | 227 | 1 | 227 | 1.74e-149 | 415 |
Find 58 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATAGGTTGGCTCCTCTT+TGG | 0.231286 | 3.2:+84060991 | MS.gene78700:CDS |
| CCTAGAGGCTAATGCAAATT+TGG | 0.264750 | 3.2:+84061061 | MS.gene78700:CDS |
| AACATCAATAAAACCTATTA+AGG | 0.298184 | 3.2:-84060699 | None:intergenic |
| GCATAGGTTGGCTCCTCTTT+GGG | 0.301668 | 3.2:+84060992 | MS.gene78700:CDS |
| CCAGCACACAAGTATATAAT+AGG | 0.316254 | 3.2:-84061411 | None:intergenic |
| AGCTCAAAACCGACCACTTT+GGG | 0.322717 | 3.2:-84062201 | None:intergenic |
| TCTCTGCCAGCTTATTTGTT+TGG | 0.326986 | 3.2:+84059463 | MS.gene78700:intron |
| CTCGAGGATTAGAATTTACT+TGG | 0.331947 | 3.2:+84061021 | MS.gene78700:CDS |
| GAGCATATCCCTCGCTGGAC+TGG | 0.334400 | 3.2:+84061344 | MS.gene78700:CDS |
| TACATGTTACACACCTGATA+TGG | 0.335870 | 3.2:-84059524 | None:intergenic |
| AACTGTGCGATTCTCACTTT+CGG | 0.343965 | 3.2:+84059132 | MS.gene78700:CDS |
| GGGTCTTGGGTTTATTCTTT+CGG | 0.344658 | 3.2:-84061383 | None:intergenic |
| AGATATTTCTGTGAGTCAAC+TGG | 0.359727 | 3.2:-84060745 | None:intergenic |
| AGCTATTTGAGACGTGGATT+GGG | 0.361113 | 3.2:+84062168 | MS.gene78700:intron |
| CAGCTATTTGAGACGTGGAT+TGG | 0.383715 | 3.2:+84062167 | MS.gene78700:intron |
| CCAAATTTGCATTAGCCTCT+AGG | 0.391836 | 3.2:-84061061 | None:intergenic |
| AGTAAAGACCTTGTGATAGA+TGG | 0.402554 | 3.2:-84061450 | None:intergenic |
| CCTATTATATACTTGTGTGC+TGG | 0.408006 | 3.2:+84061411 | MS.gene78700:CDS |
| CTATTATATACTTGTGTGCT+GGG | 0.411762 | 3.2:+84061412 | MS.gene78700:CDS |
| AGCATATCCCTCGCTGGACT+GGG | 0.422684 | 3.2:+84061345 | MS.gene78700:CDS |
| TGATAGCTTTGATCCATATC+AGG | 0.429031 | 3.2:+84059511 | MS.gene78700:CDS |
| TATAATAGGAATGAGGGTCT+TGG | 0.441236 | 3.2:-84061397 | None:intergenic |
| ATAATAGGAATGAGGGTCTT+GGG | 0.442787 | 3.2:-84061396 | None:intergenic |
| AATCACAAGTTTCAAGCAGT+TGG | 0.445704 | 3.2:+84060773 | MS.gene78700:CDS |
| GAGCTCAAAACCGACCACTT+TGG | 0.467128 | 3.2:-84062202 | None:intergenic |
| GCTCTTCACATCCTTGGTGA+TGG | 0.469782 | 3.2:+84062221 | MS.gene78700:CDS |
| AGGTTGGCTCCTCTTTGGGT+GGG | 0.487173 | 3.2:+84060996 | MS.gene78700:CDS |
| AAGTTTCAAGCAGTTGGACT+TGG | 0.494155 | 3.2:+84060779 | MS.gene78700:CDS |
| TCTGTGAGTCAACTGGGTTA+AGG | 0.496836 | 3.2:-84060738 | None:intergenic |
| ACTGGGTTAAGGCAAAATAA+AGG | 0.503580 | 3.2:-84060727 | None:intergenic |
| TAGGTTGGCTCCTCTTTGGG+TGG | 0.506863 | 3.2:+84060995 | MS.gene78700:CDS |
| CCTCTTTGGGTGGGTGCTCG+AGG | 0.516207 | 3.2:+84061005 | MS.gene78700:CDS |
| TCTCGCTACAGCATTAGTAA+AGG | 0.526454 | 3.2:+84059345 | MS.gene78700:CDS |
| ACAAGTATATAATAGGAATG+AGG | 0.541413 | 3.2:-84061404 | None:intergenic |
| TTCTGCAGCTATTTGAGACG+TGG | 0.544622 | 3.2:+84062162 | MS.gene78700:intron |
| TGATTCTGTACTGCATAGGT+TGG | 0.545086 | 3.2:+84060980 | MS.gene78700:CDS |
| GATATTTCTGTGAGTCAACT+GGG | 0.551092 | 3.2:-84060744 | None:intergenic |
| GCGGAGTAGTAGACGGCGTG+AGG | 0.553841 | 3.2:-84059156 | None:intergenic |
| CCTCGAGCACCCACCCAAAG+AGG | 0.557280 | 3.2:-84061005 | None:intergenic |
| CAAGTATATAATAGGAATGA+GGG | 0.557618 | 3.2:-84061403 | None:intergenic |
| TTGCTGATTCTGTACTGCAT+AGG | 0.570050 | 3.2:+84060976 | MS.gene78700:CDS |
| TGGCATCTTCCCAAAGTGGT+CGG | 0.572570 | 3.2:+84062192 | MS.gene78700:CDS |
| AGACCTTGTGATAGATGGCA+TGG | 0.593404 | 3.2:-84061445 | None:intergenic |
| TAGCAGCTTTCTCAAGCTGA+AGG | 0.600485 | 3.2:-84062282 | None:intergenic |
| TCGAGGATTAGAATTTACTT+GGG | 0.604179 | 3.2:+84061022 | MS.gene78700:CDS |
| ATTTGAGACGTGGATTGGGG+TGG | 0.610413 | 3.2:+84062172 | MS.gene78700:CDS |
| CAAAGATCCCAGTCCAGCGA+GGG | 0.611270 | 3.2:-84061352 | None:intergenic |
| GCTATTTGAGACGTGGATTG+GGG | 0.613941 | 3.2:+84062169 | MS.gene78700:intron |
| CTGGACTGGGATCTTTGATG+TGG | 0.618650 | 3.2:+84061358 | MS.gene78700:CDS |
| AGGTGTGGCGGAGTAGTAGA+CGG | 0.628616 | 3.2:-84059163 | None:intergenic |
| CTACCATGCCATCTATCACA+AGG | 0.634671 | 3.2:+84061442 | MS.gene78700:CDS |
| CGGAGTAGTAGACGGCGTGA+GGG | 0.654035 | 3.2:-84059155 | None:intergenic |
| AGATCTGAGTATGATACACT+CGG | 0.676121 | 3.2:+84059295 | MS.gene78700:intron |
| GGGGTGGCATCTTCCCAAAG+TGG | 0.678666 | 3.2:+84062188 | MS.gene78700:CDS |
| AAGTACTTACAAAGGTGTGG+CGG | 0.688668 | 3.2:-84059175 | None:intergenic |
| ACTTATAAAAGCCATCACCA+AGG | 0.688750 | 3.2:-84062232 | None:intergenic |
| TCAAAGATCCCAGTCCAGCG+AGG | 0.696797 | 3.2:-84061353 | None:intergenic |
| TGTAGCGAGATAAACAACTG+CGG | 0.776602 | 3.2:-84059332 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTTATCATAATAAAT+AGG | - | chr3.2:84060379-84060398 | None:intergenic | 10.0% |
| !! | ACAACAAACATAATAAAATA+TGG | - | chr3.2:84060634-84060653 | None:intergenic | 15.0% |
| !! | CTATAAGAATATATGAAAAT+TGG | - | chr3.2:84060607-84060626 | None:intergenic | 15.0% |
| !! | TGAGATAATTACTATAATTA+CGG | + | chr3.2:84059810-84059829 | MS.gene78700:intron | 15.0% |
| !! | TTTATCATAATAAATAGGAA+TGG | - | chr3.2:84060374-84060393 | None:intergenic | 15.0% |
| !!! | AAACTAATTTAAAGGTATTT+TGG | - | chr3.2:84059777-84059796 | None:intergenic | 15.0% |
| !!! | AACTAATTTAAAGGTATTTT+GGG | - | chr3.2:84059776-84059795 | None:intergenic | 15.0% |
| !!! | GTTTTTCCTAAATTATAATA+AGG | + | chr3.2:84059578-84059597 | MS.gene78700:intron | 15.0% |
| !!! | TTTTATAATCCAACATTAAT+TGG | + | chr3.2:84061187-84061206 | MS.gene78700:intron | 15.0% |
| !! | AAATTATCTCCTAATTACAT+TGG | - | chr3.2:84059976-84059995 | None:intergenic | 20.0% |
| !! | AACATCAATAAAACCTATTA+AGG | - | chr3.2:84060702-84060721 | None:intergenic | 20.0% |
| !! | ACTACACCTTATTATAATTT+AGG | - | chr3.2:84059587-84059606 | None:intergenic | 20.0% |
| !! | CCATTAAGAAACTAATTTAA+AGG | - | chr3.2:84059785-84059804 | None:intergenic | 20.0% |
| !! | GAGATAATTACTATAATTAC+GGG | + | chr3.2:84059811-84059830 | MS.gene78700:intron | 20.0% |
| !! | TAAATAAACAAAAGATAGCA+CGG | - | chr3.2:84060228-84060247 | None:intergenic | 20.0% |
| !! | TATTAGTTAGAGAGTTAATT+AGG | - | chr3.2:84059417-84059436 | None:intergenic | 20.0% |
| !! | TGTAAAAAATTCAAAACTCT+AGG | - | chr3.2:84061125-84061144 | None:intergenic | 20.0% |
| !!! | AATGATTTAAAACAAGAAGA+GGG | + | chr3.2:84061656-84061675 | MS.gene78700:intron | 20.0% |
| !!! | ATTTTATTATGTTTGTTGTC+TGG | + | chr3.2:84060635-84060654 | MS.gene78700:intron | 20.0% |
| !!! | CCTTTAAATTAGTTTCTTAA+TGG | + | chr3.2:84059782-84059801 | MS.gene78700:intron | 20.0% |
| !!! | TTTTAAATTTATGTGCATCT+TGG | + | chr3.2:84060842-84060861 | MS.gene78700:intron | 20.0% |
| !!! | TTTTTACAATCCACATTAAT+TGG | + | chr3.2:84061137-84061156 | MS.gene78700:intron | 20.0% |
| ! | AAATAAACAAAAGATAGCAC+GGG | - | chr3.2:84060227-84060246 | None:intergenic | 25.0% |
| ! | ACAAGTATATAATAGGAATG+AGG | - | chr3.2:84061407-84061426 | None:intergenic | 25.0% |
| ! | ACTTAAATTTCAGCATAAGT+AGG | + | chr3.2:84060395-84060414 | MS.gene78700:intron | 25.0% |
| ! | CAAGTATATAATAGGAATGA+GGG | - | chr3.2:84061406-84061425 | None:intergenic | 25.0% |
| ! | TGCATTATTCCAATTAATGT+TGG | - | chr3.2:84061199-84061218 | None:intergenic | 25.0% |
| ! | TTAAATCATTATCTCTAGCA+GGG | - | chr3.2:84060100-84060119 | None:intergenic | 25.0% |
| ! | TTAGGTTTGAAGATGTAAAA+AGG | - | chr3.2:84059399-84059418 | None:intergenic | 25.0% |
| ! | TTCTTAAGTGTGATAAATGA+TGG | + | chr3.2:84059994-84060013 | MS.gene78700:intron | 25.0% |
| ! | TTGTACTAAATAACATATCG+TGG | - | chr3.2:84061856-84061875 | None:intergenic | 25.0% |
| ! | TTTAAATCATTATCTCTAGC+AGG | - | chr3.2:84060101-84060120 | None:intergenic | 25.0% |
| !! | AGAGATAATGATTTAAAGCA+GGG | + | chr3.2:84060104-84060123 | MS.gene78700:intron | 25.0% |
| !! | CAATGATTTAAAACAAGAAG+AGG | + | chr3.2:84061655-84061674 | MS.gene78700:intron | 25.0% |
| !! | GATTTTCTTATAACTGTTCA+TGG | + | chr3.2:84060039-84060058 | MS.gene78700:intron | 25.0% |
| !! | TAGAGATAATGATTTAAAGC+AGG | + | chr3.2:84060103-84060122 | MS.gene78700:intron | 25.0% |
| !! | TTGTCTGGAATAATAACAAA+TGG | + | chr3.2:84060650-84060669 | MS.gene78700:intron | 25.0% |
| !!! | ACTGATGTCATTTTAATTTG+AGG | + | chr3.2:84061518-84061537 | MS.gene78700:intron | 25.0% |
| !!! | CGTTTGGTATATTTTGTTTA+TGG | + | chr3.2:84060293-84060312 | MS.gene78700:intron | 25.0% |
| !!! | CTGTTTTTGAGAAATTACAA+TGG | + | chr3.2:84060561-84060580 | MS.gene78700:intron | 25.0% |
| !!! | GAATGAAAAAGTACTTACAA+AGG | - | chr3.2:84059186-84059205 | None:intergenic | 25.0% |
| !!! | TGTTTTTCAGGAATTTTTGA+AGG | + | chr3.2:84060676-84060695 | MS.gene78700:intron | 25.0% |
| !!! | TTCTTGTTTTAAATCATTGC+AGG | - | chr3.2:84061654-84061673 | None:intergenic | 25.0% |
| AATCCCAAACTCAAAATGAT+TGG | - | chr3.2:84060151-84060170 | None:intergenic | 30.0% | |
| ACCTACTTTCACACTTATTA+AGG | - | chr3.2:84059900-84059919 | None:intergenic | 30.0% | |
| AGTTTGTCAATGTTGTTATG+TGG | + | chr3.2:84061221-84061240 | MS.gene78700:intron | 30.0% | |
| ATACAAGAGAATATTTGTGG+AGG | + | chr3.2:84060017-84060036 | MS.gene78700:intron | 30.0% | |
| CAAAATATACCAAACGCTTA+AGG | - | chr3.2:84060289-84060308 | None:intergenic | 30.0% | |
| CATAATAAATAGGAATGGCA+AGG | - | chr3.2:84060369-84060388 | None:intergenic | 30.0% | |
| CTATATAACAACACTCATTG+AGG | - | chr3.2:84061785-84061804 | None:intergenic | 30.0% | |
| CTATTATATACTTGTGTGCT+GGG | + | chr3.2:84061412-84061431 | MS.gene78700:CDS | 30.0% | |
| GTGTTTCAAATAGATTACAG+TGG | + | chr3.2:84061877-84061896 | MS.gene78700:intron | 30.0% | |
| TAAATTTCAGCATAAGTAGG+CGG | + | chr3.2:84060398-84060417 | MS.gene78700:intron | 30.0% | |
| TATCTCCTAATTACATTGGA+GGG | - | chr3.2:84059972-84059991 | None:intergenic | 30.0% | |
| TCAATGTTGTTATGTGGTAT+AGG | + | chr3.2:84061227-84061246 | MS.gene78700:intron | 30.0% | |
| TCCTTAATAAGTGTGAAAGT+AGG | + | chr3.2:84059896-84059915 | MS.gene78700:intron | 30.0% | |
| TCGAGGATTAGAATTTACTT+GGG | + | chr3.2:84061022-84061041 | MS.gene78700:CDS | 30.0% | |
| TGGATACAAGAGAATATTTG+TGG | + | chr3.2:84060014-84060033 | MS.gene78700:intron | 30.0% | |
| TTATCTCCTAATTACATTGG+AGG | - | chr3.2:84059973-84059992 | None:intergenic | 30.0% | |
| ! | AATCACTGGTCTATTAGATA+TGG | + | chr3.2:84062065-84062084 | MS.gene78700:intron | 30.0% |
| ! | AATGATTTAAAGCAGGGATA+GGG | + | chr3.2:84060110-84060129 | MS.gene78700:intron | 30.0% |
| ! | AGTTTTCATGATGCGAAATT+GGG | - | chr3.2:84059245-84059264 | None:intergenic | 30.0% |
| ! | CTGTGTTATTCCAATTAATG+TGG | - | chr3.2:84061150-84061169 | None:intergenic | 30.0% |
| ! | TAATGATTTAAAGCAGGGAT+AGG | + | chr3.2:84060109-84060128 | MS.gene78700:intron | 30.0% |
| ! | TAGTTTTCATGATGCGAAAT+TGG | - | chr3.2:84059246-84059265 | None:intergenic | 30.0% |
| ! | TGATAAAAGACCTGTCTTTT+TGG | + | chr3.2:84062038-84062057 | MS.gene78700:intron | 30.0% |
| !! | AAAAAGTACTTACAAAGGTG+TGG | - | chr3.2:84059181-84059200 | None:intergenic | 30.0% |
| !! | GAATTTTTGAAGGCCTTAAT+AGG | + | chr3.2:84060686-84060705 | MS.gene78700:CDS | 30.0% |
| !!! | AACAAATGGCTTTGTTTTTC+AGG | + | chr3.2:84060664-84060683 | MS.gene78700:intron | 30.0% |
| !!! | ATAGGTTTTATTGATGTTGC+TGG | + | chr3.2:84060704-84060723 | MS.gene78700:CDS | 30.0% |
| !!! | ATCATTTTGAGTTTGGGATT+TGG | + | chr3.2:84060151-84060170 | MS.gene78700:intron | 30.0% |
| !!! | TAGCCAATCATTTTGAGTTT+GGG | + | chr3.2:84060145-84060164 | MS.gene78700:intron | 30.0% |
| !!! | TCATTTTGAGTTTGGGATTT+GGG | + | chr3.2:84060152-84060171 | MS.gene78700:intron | 30.0% |
| AAACACTACGCTACAGTAAA+TGG | - | chr3.2:84062129-84062148 | None:intergenic | 35.0% | |
| AAGTAGCCAAACAAATAAGC+TGG | - | chr3.2:84059472-84059491 | None:intergenic | 35.0% | |
| AATAGCAAAAGAAACACCAG+AGG | - | chr3.2:84060901-84060920 | None:intergenic | 35.0% | |
| AATCACAAGTTTCAAGCAGT+TGG | + | chr3.2:84060773-84060792 | MS.gene78700:CDS | 35.0% | |
| ACTGGGTTAAGGCAAAATAA+AGG | - | chr3.2:84060730-84060749 | None:intergenic | 35.0% | |
| ACTTATAAAAGCCATCACCA+AGG | - | chr3.2:84062235-84062254 | None:intergenic | 35.0% | |
| AGATACCCTCCAATGTAATT+AGG | + | chr3.2:84059964-84059983 | MS.gene78700:intron | 35.0% | |
| AGATACTGCAGAATCTTGAA+GGG | - | chr3.2:84060201-84060220 | None:intergenic | 35.0% | |
| AGATCTGAGTATGATACACT+CGG | + | chr3.2:84059295-84059314 | MS.gene78700:intron | 35.0% | |
| AGTAAAGACCTTGTGATAGA+TGG | - | chr3.2:84061453-84061472 | None:intergenic | 35.0% | |
| ATAATAGGAATGAGGGTCTT+GGG | - | chr3.2:84061399-84061418 | None:intergenic | 35.0% | |
| ATCAATGCATAAAGCCCAAA+GGG | + | chr3.2:84060432-84060451 | MS.gene78700:intron | 35.0% | |
| CCAGCACACAAGTATATAAT+AGG | - | chr3.2:84061414-84061433 | None:intergenic | 35.0% | |
| CCTATTATATACTTGTGTGC+TGG | + | chr3.2:84061411-84061430 | MS.gene78700:CDS | 35.0% | |
| CTCGAGGATTAGAATTTACT+TGG | + | chr3.2:84061021-84061040 | MS.gene78700:CDS | 35.0% | |
| CTTCTCTAACTTTCACTTGT+CGG | + | chr3.2:84060924-84060943 | MS.gene78700:intron | 35.0% | |
| GTGATTCTATCCAAAAAGAC+AGG | - | chr3.2:84062051-84062070 | None:intergenic | 35.0% | |
| TACATGTTACACACCTGATA+TGG | - | chr3.2:84059527-84059546 | None:intergenic | 35.0% | |
| TATAACTGTTCATGGTAGCT+GGG | + | chr3.2:84060047-84060066 | MS.gene78700:intron | 35.0% | |
| TATAATAGGAATGAGGGTCT+TGG | - | chr3.2:84061400-84061419 | None:intergenic | 35.0% | |
| TATCAATGCATAAAGCCCAA+AGG | + | chr3.2:84060431-84060450 | MS.gene78700:intron | 35.0% | |
| TGAGAAGAAAAATCCCAGTT+AGG | - | chr3.2:84061723-84061742 | None:intergenic | 35.0% | |
| TTATAACTGTTCATGGTAGC+TGG | + | chr3.2:84060046-84060065 | MS.gene78700:intron | 35.0% | |
| TTTCTGCACTTTATCTGTAC+AGG | + | chr3.2:84061317-84061336 | MS.gene78700:intron | 35.0% | |
| ! | AGATATTTCTGTGAGTCAAC+TGG | - | chr3.2:84060748-84060767 | None:intergenic | 35.0% |
| ! | CATCTAAAACCTTAAGCGTT+TGG | + | chr3.2:84060277-84060296 | MS.gene78700:intron | 35.0% |
| ! | GATATTTCTGTGAGTCAACT+GGG | - | chr3.2:84060747-84060766 | None:intergenic | 35.0% |
| ! | GCCTAAAAGCTTAAGCTTTT+GGG | + | chr3.2:84060502-84060521 | MS.gene78700:intron | 35.0% |
| ! | GTCTTTTTGGATAGAATCAC+TGG | + | chr3.2:84062051-84062070 | MS.gene78700:intron | 35.0% |
| ! | GTTTTCATGATGCGAAATTG+GGG | - | chr3.2:84059244-84059263 | None:intergenic | 35.0% |
| ! | TCCCAAAAGCTTAAGCTTTT+AGG | - | chr3.2:84060506-84060525 | None:intergenic | 35.0% |
| ! | TCTAGCACTCACTCTTTTAT+TGG | + | chr3.2:84061573-84061592 | MS.gene78700:intron | 35.0% |
| ! | TTTTCATGATGCGAAATTGG+GGG | - | chr3.2:84059243-84059262 | None:intergenic | 35.0% |
| !! | TGATAGCTTTGATCCATATC+AGG | + | chr3.2:84059511-84059530 | MS.gene78700:CDS | 35.0% |
| !!! | GTAGCCAATCATTTTGAGTT+TGG | + | chr3.2:84060144-84060163 | MS.gene78700:intron | 35.0% |
| !!! | TGGTGATGGCTTTTATAAGT+TGG | + | chr3.2:84062235-84062254 | MS.gene78700:CDS | 35.0% |
| !!! | TTGTTTGGCTACTTTTCTCA+AGG | + | chr3.2:84059478-84059497 | MS.gene78700:CDS | 35.0% |
| AACTGTGCGATTCTCACTTT+CGG | + | chr3.2:84059132-84059151 | MS.gene78700:CDS | 40.0% | |
| AAGTTTCAAGCAGTTGGACT+TGG | + | chr3.2:84060779-84060798 | MS.gene78700:CDS | 40.0% | |
| ACAAATAAGCTGGCAGAGAA+AGG | - | chr3.2:84059462-84059481 | None:intergenic | 40.0% | |
| ATAACTGTTCATGGTAGCTG+GGG | + | chr3.2:84060048-84060067 | MS.gene78700:intron | 40.0% | |
| CAAATAGAACCCACACAATG+TGG | - | chr3.2:84061620-84061639 | None:intergenic | 40.0% | |
| CACAAGAGTGAAGCATGAAA+TGG | - | chr3.2:84059678-84059697 | None:intergenic | 40.0% | |
| CCTAGAGGCTAATGCAAATT+TGG | + | chr3.2:84061061-84061080 | MS.gene78700:CDS | 40.0% | |
| CTAATTCCTTCCATTCTGGA+GGG | + | chr3.2:84059615-84059634 | MS.gene78700:intron | 40.0% | |
| GAGATACTGCAGAATCTTGA+AGG | - | chr3.2:84060202-84060221 | None:intergenic | 40.0% | |
| GATACTGCAGAATCTTGAAG+GGG | - | chr3.2:84060200-84060219 | None:intergenic | 40.0% | |
| GCTATAGCATTGTAGCATAG+TGG | + | chr3.2:84061901-84061920 | MS.gene78700:intron | 40.0% | |
| GCTATAGCGCAATTGTTTAG+TGG | + | chr3.2:84061807-84061826 | MS.gene78700:intron | 40.0% | |
| GGAGAAAGAGAGGTAAAAGT+TGG | - | chr3.2:84061990-84062009 | None:intergenic | 40.0% | |
| GGGTCTTGGGTTTATTCTTT+CGG | - | chr3.2:84061386-84061405 | None:intergenic | 40.0% | |
| GGTCTATTAGATATGGTGCT+TGG | + | chr3.2:84062072-84062091 | MS.gene78700:intron | 40.0% | |
| GTTGCTAACACTACCTAACT+GGG | + | chr3.2:84061707-84061726 | MS.gene78700:intron | 40.0% | |
| TCTAATTCCTTCCATTCTGG+AGG | + | chr3.2:84059614-84059633 | MS.gene78700:intron | 40.0% | |
| TCTCGCTACAGCATTAGTAA+AGG | + | chr3.2:84059345-84059364 | MS.gene78700:CDS | 40.0% | |
| TCTCTGCCAGCTTATTTGTT+TGG | + | chr3.2:84059463-84059482 | MS.gene78700:intron | 40.0% | |
| TGATGTTCTCCTTCCTTGAT+CGG | + | chr3.2:84060875-84060894 | MS.gene78700:intron | 40.0% | |
| TGATTCTGTACTGCATAGGT+TGG | + | chr3.2:84060980-84060999 | MS.gene78700:CDS | 40.0% | |
| TGTAGCGAGATAAACAACTG+CGG | - | chr3.2:84059335-84059354 | None:intergenic | 40.0% | |
| TGTTGCTAACACTACCTAAC+TGG | + | chr3.2:84061706-84061725 | MS.gene78700:intron | 40.0% | |
| ! | AAGTACTTACAAAGGTGTGG+CGG | - | chr3.2:84059178-84059197 | None:intergenic | 40.0% |
| ! | AGCTATTTGAGACGTGGATT+GGG | + | chr3.2:84062168-84062187 | MS.gene78700:intron | 40.0% |
| ! | AGCTCTAATTCCTTCCATTC+TGG | + | chr3.2:84059611-84059630 | MS.gene78700:intron | 40.0% |
| ! | CCAAATTTGCATTAGCCTCT+AGG | - | chr3.2:84061064-84061083 | None:intergenic | 40.0% |
| ! | CGCCTAAAAGCTTAAGCTTT+TGG | + | chr3.2:84060501-84060520 | MS.gene78700:intron | 40.0% |
| ! | GCACTCACTCTTTTATTGGA+TGG | + | chr3.2:84061577-84061596 | MS.gene78700:intron | 40.0% |
| ! | TTTTGAGCTCTTCACATCCT+TGG | + | chr3.2:84062215-84062234 | MS.gene78700:CDS | 40.0% |
| !! | ACTTGGGAGTACATTTTGCA+GGG | + | chr3.2:84061038-84061057 | MS.gene78700:CDS | 40.0% |
| !! | TACTTGGGAGTACATTTTGC+AGG | + | chr3.2:84061037-84061056 | MS.gene78700:CDS | 40.0% |
| !! | TTGCTGATTCTGTACTGCAT+AGG | + | chr3.2:84060976-84060995 | MS.gene78700:CDS | 40.0% |
| !! | TTGGTACGTTCTTTAGCTCT+CGG | + | chr3.2:84061080-84061099 | MS.gene78700:intron | 40.0% |
| !!! | CTTTTGGGATAGATGGTTCA+TGG | + | chr3.2:84060517-84060536 | MS.gene78700:intron | 40.0% |
| !!! | GCTTAAGCTTTTGGGATAGA+TGG | + | chr3.2:84060510-84060529 | MS.gene78700:intron | 40.0% |
| AGACCTTGTGATAGATGGCA+TGG | - | chr3.2:84061448-84061467 | None:intergenic | 45.0% | |
| AGCTCAAAACCGACCACTTT+GGG | - | chr3.2:84062204-84062223 | None:intergenic | 45.0% | |
| ATAGAACCCACACAATGTGG+TGG | - | chr3.2:84061617-84061636 | None:intergenic | 45.0% | |
| ATCATTGCCATCTGCTCTCT+TGG | - | chr3.2:84059944-84059963 | None:intergenic | 45.0% | |
| CTACCATGCCATCTATCACA+AGG | + | chr3.2:84061442-84061461 | MS.gene78700:CDS | 45.0% | |
| GAAGCCAGTGTTGTCAATAG+CGG | - | chr3.2:84061956-84061975 | None:intergenic | 45.0% | |
| TAGAACCCACACAATGTGGT+GGG | - | chr3.2:84061616-84061635 | None:intergenic | 45.0% | |
| TATCTACGCAGCAACAGACT+CGG | - | chr3.2:84062011-84062030 | None:intergenic | 45.0% | |
| TATGTCCCACCACATTGTGT+GGG | + | chr3.2:84061608-84061627 | MS.gene78700:intron | 45.0% | |
| TCTGTGAGTCAACTGGGTTA+AGG | - | chr3.2:84060741-84060760 | None:intergenic | 45.0% | |
| ! | CAGCTATTTGAGACGTGGAT+TGG | + | chr3.2:84062167-84062186 | MS.gene78700:intron | 45.0% |
| ! | CTCATTGAGGCTTTTGTGCT+TGG | - | chr3.2:84061772-84061791 | None:intergenic | 45.0% |
| ! | GCTATTTGAGACGTGGATTG+GGG | + | chr3.2:84062169-84062188 | MS.gene78700:intron | 45.0% |
| ! | TTCTGCAGCTATTTGAGACG+TGG | + | chr3.2:84062162-84062181 | MS.gene78700:intron | 45.0% |
| CAACAGACTCGGAGAAAGAG+AGG | - | chr3.2:84062000-84062019 | None:intergenic | 50.0% | |
| CACTGACACGAGATCCCTTT+GGG | - | chr3.2:84060449-84060468 | None:intergenic | 50.0% | |
| CGATCCGCTATTGACAACAC+TGG | + | chr3.2:84061949-84061968 | MS.gene78700:intron | 50.0% | |
| GACGGAGTTCTTGTCTGTGT+AGG | + | chr3.2:84059637-84059656 | MS.gene78700:intron | 50.0% | |
| GAGCTCAAAACCGACCACTT+TGG | - | chr3.2:84062205-84062224 | None:intergenic | 50.0% | |
| GCTCTTCACATCCTTGGTGA+TGG | + | chr3.2:84062221-84062240 | MS.gene78700:CDS | 50.0% | |
| GTATGTCCCACCACATTGTG+TGG | + | chr3.2:84061607-84061626 | MS.gene78700:intron | 50.0% | |
| TCACTGACACGAGATCCCTT+TGG | - | chr3.2:84060450-84060469 | None:intergenic | 50.0% | |
| TGGCATCTTCCCAAAGTGGT+CGG | + | chr3.2:84062192-84062211 | MS.gene78700:CDS | 50.0% | |
| TTCATGGTAGCTGGGGATAG+AGG | + | chr3.2:84060055-84060074 | MS.gene78700:intron | 50.0% | |
| TTGAGTGCCAAGAGAGCAGA+TGG | + | chr3.2:84059934-84059953 | MS.gene78700:intron | 50.0% | |
| ! | CTGGACTGGGATCTTTGATG+TGG | + | chr3.2:84061358-84061377 | MS.gene78700:CDS | 50.0% |
| ! | GCATAGGTTGGCTCCTCTTT+GGG | + | chr3.2:84060992-84061011 | MS.gene78700:CDS | 50.0% |
| ! | GTACATTTTGCAGGGCCTAG+AGG | + | chr3.2:84061046-84061065 | MS.gene78700:CDS | 50.0% |
| ! | TGCATAGGTTGGCTCCTCTT+TGG | + | chr3.2:84060991-84061010 | MS.gene78700:CDS | 50.0% |
| ! | TTCCTTCCATTCTGGAGGGA+CGG | + | chr3.2:84059619-84059638 | MS.gene78700:intron | 50.0% |
| !! | ATTTGAGACGTGGATTGGGG+TGG | + | chr3.2:84062172-84062191 | MS.gene78700:CDS | 50.0% |
| !! | GTGTTGTCAATAGCGGATCG+CGG | - | chr3.2:84061949-84061968 | None:intergenic | 50.0% |
| !! | GTTTTGAGCATATCCCTCGC+TGG | + | chr3.2:84061339-84061358 | MS.gene78700:CDS | 50.0% |
| !! | TGTCGGTGTCACTTCTCTTG+TGG | + | chr3.2:84060941-84060960 | MS.gene78700:intron | 50.0% |
| AGAACTCCGTCCCTCCAGAA+TGG | - | chr3.2:84059628-84059647 | None:intergenic | 55.0% | |
| AGCATATCCCTCGCTGGACT+GGG | + | chr3.2:84061345-84061364 | MS.gene78700:CDS | 55.0% | |
| CAAAGATCCCAGTCCAGCGA+GGG | - | chr3.2:84061355-84061374 | None:intergenic | 55.0% | |
| CACTTCTCTTGTGGCAGGCT+GGG | + | chr3.2:84060950-84060969 | MS.gene78700:intron | 55.0% | |
| GAAACACCAGAGGCCGATCA+AGG | - | chr3.2:84060891-84060910 | None:intergenic | 55.0% | |
| GTCTACTTCCTCCCATCCTG+TGG | - | chr3.2:84060178-84060197 | None:intergenic | 55.0% | |
| TAGCTGGGGATAGAGGAGTG+AGG | + | chr3.2:84060062-84060081 | MS.gene78700:intron | 55.0% | |
| TCAAAGATCCCAGTCCAGCG+AGG | - | chr3.2:84061356-84061375 | None:intergenic | 55.0% | |
| TCACTTCTCTTGTGGCAGGC+TGG | + | chr3.2:84060949-84060968 | MS.gene78700:intron | 55.0% | |
| TGGGATTTGGGCCACAGGAT+GGG | + | chr3.2:84060164-84060183 | MS.gene78700:intron | 55.0% | |
| TGGGGATAGAGGAGTGAGGA+AGG | + | chr3.2:84060066-84060085 | MS.gene78700:intron | 55.0% | |
| TTGGGATTTGGGCCACAGGA+TGG | + | chr3.2:84060163-84060182 | MS.gene78700:intron | 55.0% | |
| ! | AGGTGTGGCGGAGTAGTAGA+CGG | - | chr3.2:84059166-84059185 | None:intergenic | 55.0% |
| ! | AGGTTGGCTCCTCTTTGGGT+GGG | + | chr3.2:84060996-84061015 | MS.gene78700:CDS | 55.0% |
| ! | GAGTTTGGGATTTGGGCCAC+AGG | + | chr3.2:84060159-84060178 | MS.gene78700:intron | 55.0% |
| ! | TAGGTTGGCTCCTCTTTGGG+TGG | + | chr3.2:84060995-84061014 | MS.gene78700:CDS | 55.0% |
| !! | GGTGTCACTTCTCTTGTGGC+AGG | + | chr3.2:84060945-84060964 | MS.gene78700:intron | 55.0% |
| CACCAGAGGCCGATCAAGGA+AGG | - | chr3.2:84060887-84060906 | None:intergenic | 60.0% | |
| CGGAGTAGTAGACGGCGTGA+GGG | - | chr3.2:84059158-84059177 | None:intergenic | 60.0% | |
| CTCCGTCCCTCCAGAATGGA+AGG | - | chr3.2:84059624-84059643 | None:intergenic | 60.0% | |
| CTCCTTCCTTGATCGGCCTC+TGG | + | chr3.2:84060882-84060901 | MS.gene78700:intron | 60.0% | |
| GAGCATATCCCTCGCTGGAC+TGG | + | chr3.2:84061344-84061363 | MS.gene78700:CDS | 60.0% | |
| GATTTGGGCCACAGGATGGG+AGG | + | chr3.2:84060167-84060186 | MS.gene78700:intron | 60.0% | |
| GGGGTGGCATCTTCCCAAAG+TGG | + | chr3.2:84062188-84062207 | MS.gene78700:CDS | 60.0% | |
| CCTCGAGCACCCACCCAAAG+AGG | - | chr3.2:84061008-84061027 | None:intergenic | 65.0% | |
| CCTCTTTGGGTGGGTGCTCG+AGG | + | chr3.2:84061005-84061024 | MS.gene78700:CDS | 65.0% | |
| GCGGAGTAGTAGACGGCGTG+AGG | - | chr3.2:84059159-84059178 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 84059111 | 84062293 | 84059111 | ID=MS.gene78700 |
| chr3.2 | mRNA | 84059111 | 84062293 | 84059111 | ID=MS.gene78700.t1;Parent=MS.gene78700 |
| chr3.2 | exon | 84059111 | 84059187 | 84059111 | ID=MS.gene78700.t1.exon1;Parent=MS.gene78700.t1 |
| chr3.2 | CDS | 84059111 | 84059187 | 84059111 | ID=cds.MS.gene78700.t1;Parent=MS.gene78700.t1 |
| chr3.2 | exon | 84059297 | 84059366 | 84059297 | ID=MS.gene78700.t1.exon2;Parent=MS.gene78700.t1 |
| chr3.2 | CDS | 84059297 | 84059366 | 84059297 | ID=cds.MS.gene78700.t1;Parent=MS.gene78700.t1 |
| chr3.2 | exon | 84059473 | 84059532 | 84059473 | ID=MS.gene78700.t1.exon3;Parent=MS.gene78700.t1 |
| chr3.2 | CDS | 84059473 | 84059532 | 84059473 | ID=cds.MS.gene78700.t1;Parent=MS.gene78700.t1 |
| chr3.2 | exon | 84060686 | 84060800 | 84060686 | ID=MS.gene78700.t1.exon4;Parent=MS.gene78700.t1 |
| chr3.2 | CDS | 84060686 | 84060800 | 84060686 | ID=cds.MS.gene78700.t1;Parent=MS.gene78700.t1 |
| chr3.2 | exon | 84060967 | 84061082 | 84060967 | ID=MS.gene78700.t1.exon5;Parent=MS.gene78700.t1 |
| chr3.2 | CDS | 84060967 | 84061082 | 84060967 | ID=cds.MS.gene78700.t1;Parent=MS.gene78700.t1 |
| chr3.2 | exon | 84061339 | 84061463 | 84061339 | ID=MS.gene78700.t1.exon6;Parent=MS.gene78700.t1 |
| chr3.2 | CDS | 84061339 | 84061463 | 84061339 | ID=cds.MS.gene78700.t1;Parent=MS.gene78700.t1 |
| chr3.2 | exon | 84062170 | 84062293 | 84062170 | ID=MS.gene78700.t1.exon7;Parent=MS.gene78700.t1 |
| chr3.2 | CDS | 84062170 | 84062293 | 84062170 | ID=cds.MS.gene78700.t1;Parent=MS.gene78700.t1 |
| Gene Sequence |
| Protein sequence |
