Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79013.t1 | RHN55186.1 | 83.9 | 503 | 65 | 3 | 1 | 490 | 112 | 611 | 1.60E-180 | 642.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79013.t1 | Q67Y69 | 60.7 | 61 | 24 | 0 | 8 | 68 | 16 | 76 | 2.2e-13 | 78.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79013.t1 | G7K5M5 | 83.9 | 503 | 65 | 3 | 1 | 490 | 1 | 500 | 1.2e-180 | 642.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene79013 | 0.807871 | 4.09E-50 | -1.69E-46 |
| MS.gene049435 | MS.gene79013 | 0.814148 | 1.79E-51 | -1.69E-46 |
| MS.gene049585 | MS.gene79013 | 0.805499 | 1.30E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene79013 | 0.80727 | 5.49E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene79013 | 0.803841 | 2.88E-49 | -1.69E-46 |
| MS.gene051800 | MS.gene79013 | 0.841945 | 3.49E-58 | -1.69E-46 |
| MS.gene053226 | MS.gene79013 | 0.803284 | 3.75E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene79013 | 0.848081 | 7.69E-60 | -1.69E-46 |
| MS.gene055227 | MS.gene79013 | 0.81048 | 1.13E-50 | -1.69E-46 |
| MS.gene055926 | MS.gene79013 | 0.805343 | 1.40E-49 | -1.69E-46 |
| MS.gene056173 | MS.gene79013 | 0.813163 | 2.94E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene79013 | 0.814744 | 1.32E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene79013 | 0.824336 | 8.53E-54 | -1.69E-46 |
| MS.gene058010 | MS.gene79013 | 0.802106 | 6.57E-49 | -1.69E-46 |
| MS.gene059725 | MS.gene79013 | 0.808338 | 3.25E-50 | -1.69E-46 |
| MS.gene060167 | MS.gene79013 | 0.801031 | 1.09E-48 | -1.69E-46 |
| MS.gene06052 | MS.gene79013 | 0.800153 | 1.65E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene027495 | MS.gene79013 | PPI |
| MS.gene45165 | MS.gene79013 | PPI |
| MS.gene79013 | MS.gene027495 | PPI |
| MS.gene58579 | MS.gene79013 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79013.t1 | MTR_5g036560 | 91.054 | 503 | 29 | 3 | 1 | 490 | 1 | 500 | 0.0 | 881 |
| MS.gene79013.t1 | MTR_3g086090 | 30.838 | 334 | 182 | 14 | 10 | 316 | 31 | 342 | 2.38e-23 | 104 |
| MS.gene79013.t1 | MTR_3g086090 | 32.661 | 248 | 134 | 11 | 10 | 244 | 12 | 239 | 1.39e-21 | 98.6 |
| MS.gene79013.t1 | MTR_3g086090 | 32.661 | 248 | 134 | 11 | 10 | 244 | 31 | 258 | 1.50e-21 | 98.6 |
| MS.gene79013.t1 | MTR_6g022230 | 67.857 | 56 | 18 | 0 | 7 | 62 | 27 | 82 | 6.92e-19 | 90.1 |
| MS.gene79013.t1 | MTR_0117s0080 | 64.151 | 53 | 19 | 0 | 10 | 62 | 35 | 87 | 3.24e-17 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79013.t1 | AT1G70100 | 37.149 | 498 | 223 | 20 | 6 | 457 | 20 | 473 | 3.68e-60 | 205 |
| MS.gene79013.t1 | AT1G70100 | 37.349 | 498 | 222 | 20 | 6 | 457 | 20 | 473 | 7.13e-60 | 205 |
| MS.gene79013.t1 | AT1G70100 | 37.349 | 498 | 222 | 20 | 6 | 457 | 20 | 473 | 7.13e-60 | 205 |
| MS.gene79013.t1 | AT1G70100 | 37.137 | 482 | 217 | 20 | 6 | 441 | 20 | 461 | 1.95e-57 | 197 |
| MS.gene79013.t1 | AT1G70100 | 37.137 | 482 | 217 | 20 | 6 | 441 | 20 | 461 | 1.95e-57 | 197 |
| MS.gene79013.t1 | AT1G70100 | 37.137 | 482 | 217 | 20 | 6 | 441 | 20 | 461 | 1.95e-57 | 197 |
| MS.gene79013.t1 | AT1G24160 | 46.479 | 213 | 75 | 10 | 6 | 209 | 30 | 212 | 1.58e-37 | 145 |
| MS.gene79013.t1 | AT1G24160 | 46.479 | 213 | 75 | 10 | 6 | 209 | 30 | 212 | 1.58e-37 | 145 |
| MS.gene79013.t1 | AT3G26050 | 52.564 | 78 | 37 | 0 | 8 | 85 | 28 | 105 | 1.44e-19 | 92.0 |
| MS.gene79013.t1 | AT3G27350 | 64.516 | 62 | 21 | 1 | 10 | 70 | 30 | 91 | 2.28e-18 | 85.5 |
| MS.gene79013.t1 | AT3G27350 | 64.516 | 62 | 21 | 1 | 10 | 70 | 30 | 91 | 7.68e-18 | 84.7 |
| MS.gene79013.t1 | AT1G70950 | 60.656 | 61 | 24 | 0 | 8 | 68 | 16 | 76 | 3.49e-17 | 84.3 |
| MS.gene79013.t1 | AT5G40700 | 66.038 | 53 | 18 | 0 | 10 | 62 | 30 | 82 | 8.79e-17 | 80.5 |
| MS.gene79013.t1 | AT5G40700 | 66.038 | 53 | 18 | 0 | 10 | 62 | 30 | 82 | 1.52e-16 | 80.9 |
| MS.gene79013.t1 | AT5G40700 | 66.038 | 53 | 18 | 0 | 10 | 62 | 30 | 82 | 1.55e-16 | 80.9 |
| MS.gene79013.t1 | AT1G23060 | 62.295 | 61 | 23 | 0 | 8 | 68 | 16 | 76 | 3.91e-16 | 80.5 |
| MS.gene79013.t1 | AT1G23060 | 62.295 | 61 | 23 | 0 | 8 | 68 | 16 | 76 | 3.91e-16 | 80.5 |
| MS.gene79013.t1 | AT3G01710 | 61.404 | 57 | 21 | 1 | 7 | 62 | 20 | 76 | 1.96e-14 | 74.7 |
| MS.gene79013.t1 | AT3G01710 | 61.404 | 57 | 21 | 1 | 7 | 62 | 20 | 76 | 2.16e-14 | 75.5 |
| MS.gene79013.t1 | AT3G01710 | 61.404 | 57 | 21 | 1 | 7 | 62 | 20 | 76 | 2.39e-14 | 75.1 |
| MS.gene79013.t1 | AT3G01710 | 61.404 | 57 | 21 | 1 | 7 | 62 | 20 | 76 | 2.92e-14 | 75.1 |
| MS.gene79013.t1 | AT3G27350 | 67.347 | 49 | 15 | 1 | 23 | 70 | 3 | 51 | 3.60e-13 | 70.5 |
Find 110 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCTTCCAAATACTTATT+TGG | 0.140230 | 5.2:+27056206 | None:intergenic |
| CACTGGTTTCTTCTTTGTTT+TGG | 0.160966 | 5.2:+27055482 | None:intergenic |
| ATTCTCTCCAAATAAGTATT+TGG | 0.192425 | 5.2:-27056213 | MS.gene79013:CDS |
| ATCTGCCGCTTCAACTAAAA+AGG | 0.192462 | 5.2:-27055382 | MS.gene79013:CDS |
| ATCTCTCATTATGGATAGTA+TGG | 0.195712 | 5.2:-27055205 | MS.gene79013:CDS |
| AAGCAAACCTTAGATTTCTT+TGG | 0.233076 | 5.2:+27055621 | None:intergenic |
| TCAACTTTGCGGAAAGAAAA+TGG | 0.242699 | 5.2:-27054907 | MS.gene79013:CDS |
| GAGCCAACAATTCGGCTTTC+CGG | 0.260429 | 5.2:+27056108 | None:intergenic |
| AGCCAACAATTCGGCTTTCC+GGG | 0.287622 | 5.2:+27056109 | None:intergenic |
| TTGGCTGGTTAAAATTCTTC+TGG | 0.301994 | 5.2:+27055145 | None:intergenic |
| TACGAGGAAATCTCTCATTA+TGG | 0.325103 | 5.2:-27055214 | MS.gene79013:CDS |
| GATAGGTTATCCCTGTGAAT+AGG | 0.335244 | 5.2:-27055518 | MS.gene79013:intron |
| GGAGGAGGAAGTTGCGGTTT+CGG | 0.336314 | 5.2:-27055862 | MS.gene79013:CDS |
| TTGCAAGTGTCTGTTTCTTT+TGG | 0.337585 | 5.2:-27056278 | MS.gene79013:CDS |
| TTCTTCTGTGCTACTGATCC+AGG | 0.363303 | 5.2:+27056167 | None:intergenic |
| ATCAGCCTGGTTGGTGAAAT+CGG | 0.364294 | 5.2:-27055912 | MS.gene79013:CDS |
| GGATCATCCAAAGAAATCTA+AGG | 0.365888 | 5.2:-27055628 | MS.gene79013:intron |
| TGTGAGACTGATTCGGAATT+CGG | 0.389869 | 5.2:-27055990 | MS.gene79013:CDS |
| TTCCAACTTCTTCAACTTTG+CGG | 0.397164 | 5.2:-27054918 | MS.gene79013:CDS |
| CTAGAAGTAACTTGCCTCCT+AGG | 0.410045 | 5.2:+27055342 | None:intergenic |
| TTCCGCAAAGTTGAAGAAGT+TGG | 0.411188 | 5.2:+27054916 | None:intergenic |
| GGAACTGGATCAGGCTTACT+TGG | 0.415359 | 5.2:+27055264 | None:intergenic |
| ATAGGTTATCCCTGTGAATA+GGG | 0.434793 | 5.2:-27055517 | MS.gene79013:intron |
| ATCCTGGACAGGCTCCTTCA+AGG | 0.441961 | 5.2:-27054957 | MS.gene79013:intron |
| TTCAGATCAGAAGAAAATAA+TGG | 0.443228 | 5.2:-27056053 | MS.gene79013:CDS |
| AAAGCTAAAGCATGATTTCA+AGG | 0.446740 | 5.2:-27052992 | MS.gene79013:CDS |
| CTTCTCTTGAGCCAACAATT+CGG | 0.451413 | 5.2:+27056100 | None:intergenic |
| TTGCACATGTCTATGAGCTT+AGG | 0.451785 | 5.2:-27055288 | MS.gene79013:CDS |
| TTCCTCGTAGTACGAGGAAC+TGG | 0.453139 | 5.2:+27055228 | None:intergenic |
| AGAAGGAGATGGAGAGGGAG+AGG | 0.454029 | 5.2:-27056082 | MS.gene79013:CDS |
| GATGTAGGCTTTGAACTTCT+CGG | 0.454715 | 5.2:+27055426 | None:intergenic |
| GGTTCAGTAGTATGAGGAAC+TGG | 0.457148 | 5.2:+27055249 | None:intergenic |
| GGCCCGGAAAGCCGAATTGT+TGG | 0.460858 | 5.2:-27056111 | MS.gene79013:CDS |
| CATAGACATGTGCAAAGATC+TGG | 0.461378 | 5.2:+27055296 | None:intergenic |
| CCACCTCAACTGATGAACTT+TGG | 0.468288 | 5.2:+27055832 | None:intergenic |
| CTCAAGAGAAGGAGATGGAG+AGG | 0.471982 | 5.2:-27056088 | MS.gene79013:CDS |
| TCCTGGACAGGCTCCTTCAA+GGG | 0.472318 | 5.2:-27054956 | MS.gene79013:intron |
| TCCATCCTCTCAACGGTAGC+AGG | 0.474386 | 5.2:+27054032 | None:intergenic |
| TTCTTGCTTATCGCATTCCT+CGG | 0.475098 | 5.2:+27055941 | None:intergenic |
| GAGAATAAAGAGGTGGAAAG+TGG | 0.486653 | 5.2:-27055810 | MS.gene79013:CDS |
| GAGTCATGCGGATGATTTGA+AGG | 0.487910 | 5.2:-27055886 | MS.gene79013:CDS |
| GCCTGGTTGGTGAAATCGGC+AGG | 0.491982 | 5.2:-27055908 | MS.gene79013:CDS |
| GTCGAAATTTGAGATGCCTT+AGG | 0.493805 | 5.2:+27055450 | None:intergenic |
| TTGATAATGATTCACTGTCA+TGG | 0.498358 | 5.2:-27056250 | MS.gene79013:CDS |
| GCCTGCTACCGTTGAGAGGA+TGG | 0.498871 | 5.2:-27054033 | MS.gene79013:CDS |
| GAAGGAGGAGGAGGAAGTTG+CGG | 0.503678 | 5.2:-27055868 | MS.gene79013:CDS |
| TGATAATGATTCACTGTCAT+GGG | 0.504101 | 5.2:-27056249 | MS.gene79013:CDS |
| GTAGTATGAGGAACTGGATC+AGG | 0.506674 | 5.2:+27055255 | None:intergenic |
| AGTGACATTAAATCAGAGAA+AGG | 0.512134 | 5.2:-27053969 | MS.gene79013:CDS |
| GGTATAGATCTGAGCGGTAA+TGG | 0.512864 | 5.2:-27056032 | MS.gene79013:CDS |
| ATCAGCTCCAACTAAAACAT+TGG | 0.513745 | 5.2:-27055406 | MS.gene79013:CDS |
| ACCACGATAAGAAGTTGGTA+GGG | 0.513841 | 5.2:+27052963 | None:intergenic |
| GCGTCTCCAAACAAAATTGA+AGG | 0.515742 | 5.2:-27053795 | MS.gene79013:intron |
| GTGACATTAAATCAGAGAAA+GGG | 0.517883 | 5.2:-27053968 | MS.gene79013:CDS |
| GAAGGAGATGGAGAGGGAGA+GGG | 0.518011 | 5.2:-27056081 | MS.gene79013:CDS |
| GGATGATTTGAAGGAGGAGG+AGG | 0.520239 | 5.2:-27055877 | MS.gene79013:CDS |
| CGTTGAAGAAGACAGATCTT+CGG | 0.520469 | 5.2:-27055115 | MS.gene79013:CDS |
| TAACGCCTGTGAGACTGATT+CGG | 0.522705 | 5.2:-27055997 | MS.gene79013:CDS |
| CAGATCTTCGGTAAAACAGC+AGG | 0.523931 | 5.2:-27055103 | MS.gene79013:intron |
| CGAAGATCTGTCTTCTTCAA+CGG | 0.533181 | 5.2:+27055116 | None:intergenic |
| GTTGAGAAGTGTGCTACACC+TGG | 0.537623 | 5.2:-27056185 | MS.gene79013:CDS |
| GAAATTGAAATCAGCCTGGT+TGG | 0.541512 | 5.2:-27055921 | MS.gene79013:CDS |
| TCTCTCATTATGGATAGTAT+GGG | 0.541545 | 5.2:-27055204 | MS.gene79013:CDS |
| CCAAAGTTCATCAGTTGAGG+TGG | 0.544431 | 5.2:-27055832 | MS.gene79013:CDS |
| AGTAACTTGCCTCCTAGGTA+AGG | 0.548527 | 5.2:+27055347 | None:intergenic |
| CTCTCATTATGGATAGTATG+GGG | 0.551989 | 5.2:-27055203 | MS.gene79013:CDS |
| TGCGGATGATTTGAAGGAGG+AGG | 0.552581 | 5.2:-27055880 | MS.gene79013:CDS |
| CGAATTGTTGGCTCAAGAGA+AGG | 0.556667 | 5.2:-27056099 | MS.gene79013:CDS |
| TTCGGTATTTCCAACACTCA+AGG | 0.565830 | 5.2:-27055972 | MS.gene79013:CDS |
| GACCACGATAAGAAGTTGGT+AGG | 0.566421 | 5.2:+27052962 | None:intergenic |
| ATTCACTGTCATGGGAGAGA+TGG | 0.571273 | 5.2:-27056241 | MS.gene79013:CDS |
| TTACCAAAGTTCATCAGTTG+AGG | 0.572684 | 5.2:-27055835 | MS.gene79013:CDS |
| GAGAGGATGGAGAAAAGAAG+TGG | 0.572851 | 5.2:-27054020 | MS.gene79013:CDS |
| GGAACTGGTTCAGTAGTATG+AGG | 0.573216 | 5.2:+27055243 | None:intergenic |
| CTTAACACAGGAGGAAAGAG+AGG | 0.578876 | 5.2:-27053025 | MS.gene79013:intron |
| ACCAGTGGCAGCAAAACCTA+AGG | 0.581842 | 5.2:-27055466 | MS.gene79013:CDS |
| GAATTCCGAATCAGTCTCAC+AGG | 0.583363 | 5.2:+27055992 | None:intergenic |
| TGTGTACAAAGAGACAGAAA+AGG | 0.583777 | 5.2:-27055682 | MS.gene79013:CDS |
| GCAAGAAATTGAAATCAGCC+TGG | 0.587715 | 5.2:-27055925 | MS.gene79013:CDS |
| ATAAGAAGTTGGTAGGGGTG+TGG | 0.595000 | 5.2:+27052969 | None:intergenic |
| TCCTGCCGATTTCACCAACC+AGG | 0.600282 | 5.2:+27055907 | None:intergenic |
| TGAGGTGGAGAATAAAGAGG+TGG | 0.606003 | 5.2:-27055817 | MS.gene79013:CDS |
| CTTTGCGGAAAGAAAATGGA+AGG | 0.609059 | 5.2:-27054903 | MS.gene79013:intron |
| GATCTGAGCGGTAATGGTAA+CGG | 0.615279 | 5.2:-27056026 | MS.gene79013:CDS |
| GTTGGCTCAAGAGAAGGAGA+TGG | 0.615563 | 5.2:-27056093 | MS.gene79013:CDS |
| GGTACAACTACCTTGAGTGT+TGG | 0.618926 | 5.2:+27055962 | None:intergenic |
| GAGGCAAGTTACTTCTAGTG+TGG | 0.620877 | 5.2:-27055337 | MS.gene79013:CDS |
| CCTGGACAGGCTCCTTCAAG+GGG | 0.624436 | 5.2:-27054955 | MS.gene79013:intron |
| CCACGATAAGAAGTTGGTAG+GGG | 0.628287 | 5.2:+27052964 | None:intergenic |
| TCAAGAGAAGGAGATGGAGA+GGG | 0.629762 | 5.2:-27056087 | MS.gene79013:CDS |
| CGTTGAAGCTGAAGATGTGA+AGG | 0.632249 | 5.2:-27055718 | MS.gene79013:CDS |
| AGTTGAGGTGGAGAATAAAG+AGG | 0.632776 | 5.2:-27055820 | MS.gene79013:CDS |
| TAAATCAGAGAAAGGGAAAG+CGG | 0.634535 | 5.2:-27053961 | MS.gene79013:intron |
| ATTACAAGAAGATTGCGGCC+CGG | 0.636848 | 5.2:-27056127 | MS.gene79013:CDS |
| ATAGGCCTGCTACCGTTGAG+AGG | 0.639643 | 5.2:-27054037 | MS.gene79013:intron |
| CAAAACAAAGAAGAAACCAG+TGG | 0.646612 | 5.2:-27055481 | MS.gene79013:CDS |
| GAAATCCGCAGTCCTTACCT+AGG | 0.647614 | 5.2:-27055359 | MS.gene79013:CDS |
| ATCCGCAGTCCTTACCTAGG+AGG | 0.650233 | 5.2:-27055356 | MS.gene79013:CDS |
| CCCCTACCAACTTCTTATCG+TGG | 0.650660 | 5.2:-27052964 | MS.gene79013:CDS |
| AGCTCATTACAAGAAGATTG+CGG | 0.664583 | 5.2:-27056132 | MS.gene79013:CDS |
| GAGGTGGAAAGTGGATCACA+TGG | 0.674354 | 5.2:-27055801 | MS.gene79013:CDS |
| TGAAATCGGCAGGAGTCATG+CGG | 0.674921 | 5.2:-27055898 | MS.gene79013:CDS |
| TCTCATTATGGATAGTATGG+GGG | 0.688469 | 5.2:-27055202 | MS.gene79013:CDS |
| AGAGATTTCCTCGTAGTACG+AGG | 0.690662 | 5.2:+27055222 | None:intergenic |
| CACTCAAGGTAGTTGTACCG+AGG | 0.698782 | 5.2:-27055958 | MS.gene79013:CDS |
| TCATGCGGATGATTTGAAGG+AGG | 0.701389 | 5.2:-27055883 | MS.gene79013:CDS |
| AACCAGTTCCTCGTACTACG+AGG | 0.710181 | 5.2:-27055230 | MS.gene79013:CDS |
| CTGGACAGGCTCCTTCAAGG+GGG | 0.743728 | 5.2:-27054954 | MS.gene79013:intron |
| TGCCTCCTAGGTAAGGACTG+CGG | 0.746167 | 5.2:+27055354 | None:intergenic |
| AATAATGGTATAGATCTGAG+CGG | 0.762921 | 5.2:-27056038 | MS.gene79013:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAACTAAATATATGAT+TGG | + | chr5.2:27056104-27056123 | None:intergenic | 10.0% |
| !!! | AATATATTTTTGTAATGTTT+CGG | - | chr5.2:27055722-27055741 | MS.gene79013:CDS | 10.0% |
| !!! | ATATATTTAGTTTATTAGAA+GGG | - | chr5.2:27056107-27056126 | MS.gene79013:CDS | 10.0% |
| !!! | CATAATGTTAAATTTTTTAA+AGG | - | chr5.2:27053649-27053668 | MS.gene79013:intron | 10.0% |
| !!! | CATATATTTAGTTTATTAGA+AGG | - | chr5.2:27056106-27056125 | MS.gene79013:CDS | 15.0% |
| !! | AAGTTATTAACGTTACAATT+TGG | - | chr5.2:27054454-27054473 | MS.gene79013:intron | 20.0% |
| !! | AAGTTATTAACGTTACAATT+TGG | + | chr5.2:27054473-27054454 | None:intergenic | 20.0% |
| !! | ATTCATAAATAATTTCCAAG+AGG | + | chr5.2:27055162-27055181 | None:intergenic | 20.0% |
| !! | ATTGTAACGTTAATAACTTA+TGG | - | chr5.2:27054660-27054679 | MS.gene79013:intron | 20.0% |
| !! | ATTGTAACGTTAATAACTTA+TGG | + | chr5.2:27054679-27054660 | None:intergenic | 20.0% |
| !! | CAATTTATATATAGATTCCT+TGG | + | chr5.2:27054854-27054873 | None:intergenic | 20.0% |
| !! | CTTGGAAATTATTTATGAAT+AGG | - | chr5.2:27055162-27055181 | MS.gene79013:CDS | 20.0% |
| !! | GAAATTTATAAGCAAAAACT+AGG | + | chr5.2:27054736-27054755 | None:intergenic | 20.0% |
| !! | GATGAAAGAAAAAAATAGTT+TGG | + | chr5.2:27055344-27055363 | None:intergenic | 20.0% |
| !! | GTTATATATGGTGATAAATT+TGG | - | chr5.2:27054172-27054191 | MS.gene79013:intron | 20.0% |
| !! | TTCAATTCAATACTTAACAA+TGG | + | chr5.2:27055001-27055020 | None:intergenic | 20.0% |
| !! | TTCATAAATAATTTCCAAGA+GGG | + | chr5.2:27055161-27055180 | None:intergenic | 20.0% |
| !! | TTGTAACGTTAATAACTTAT+GGG | - | chr5.2:27054661-27054680 | MS.gene79013:intron | 20.0% |
| !! | TTGTAACGTTAATAACTTAT+GGG | + | chr5.2:27054680-27054661 | None:intergenic | 20.0% |
| !!! | ATGATTTTTTACATATATCC+TGG | - | chr5.2:27054244-27054263 | MS.gene79013:intron | 20.0% |
| !!! | TATTTGATTACCGTTTATTT+TGG | - | chr5.2:27053677-27053696 | MS.gene79013:intron | 20.0% |
| !!! | TCTATTTTGATGAAATTGTA+TGG | - | chr5.2:27055112-27055131 | MS.gene79013:CDS | 20.0% |
| !!! | TGATTTTTTTAAAATCGACT+TGG | - | chr5.2:27055638-27055657 | MS.gene79013:CDS | 20.0% |
| !!! | TGGCATTTTTATTGTTTTAT+AGG | - | chr5.2:27054350-27054369 | MS.gene79013:intron | 20.0% |
| !!! | TTTCTAGCTTTATAAATTCA+TGG | + | chr5.2:27055824-27055843 | None:intergenic | 20.0% |
| ! | AATGATACTTATTGTGTTTG+GGG | - | chr5.2:27055582-27055601 | MS.gene79013:intron | 25.0% |
| ! | AATGTATTGTACTTCGTAAA+CGG | - | chr5.2:27054963-27054982 | MS.gene79013:intron | 25.0% |
| ! | ACTTCTTCCAAATACTTATT+TGG | + | chr5.2:27053014-27053033 | None:intergenic | 25.0% |
| ! | ATTCTCTCCAAATAAGTATT+TGG | - | chr5.2:27053004-27053023 | MS.gene79013:CDS | 25.0% |
| ! | CAATGATACTTATTGTGTTT+GGG | - | chr5.2:27055581-27055600 | MS.gene79013:intron | 25.0% |
| ! | GAATTTATAAAGCTAGAAAC+TGG | - | chr5.2:27055825-27055844 | MS.gene79013:CDS | 25.0% |
| ! | GATAACCTATCCAAAATAAA+CGG | + | chr5.2:27053690-27053709 | None:intergenic | 25.0% |
| ! | GTAACCAACAAATAACTTAA+GGG | - | chr5.2:27054692-27054711 | MS.gene79013:intron | 25.0% |
| ! | GTAACCAACAAATAACTTAA+GGG | + | chr5.2:27054711-27054692 | None:intergenic | 25.0% |
| ! | GTACAATACATTTCATCTAA+AGG | + | chr5.2:27054955-27054974 | None:intergenic | 25.0% |
| ! | TCAATGATACTTATTGTGTT+TGG | - | chr5.2:27055580-27055599 | MS.gene79013:intron | 25.0% |
| ! | TGAAGAAAAAGATGTGAAAT+TGG | - | chr5.2:27053568-27053587 | MS.gene79013:intron | 25.0% |
| ! | TGGAAGGTAAATTATTGAAT+TGG | - | chr5.2:27054330-27054349 | MS.gene79013:intron | 25.0% |
| ! | TGTAACCAACAAATAACTTA+AGG | - | chr5.2:27054691-27054710 | MS.gene79013:intron | 25.0% |
| ! | TGTAACCAACAAATAACTTA+AGG | + | chr5.2:27054710-27054691 | None:intergenic | 25.0% |
| ! | TTACTAACATATCTTAACAC+AGG | - | chr5.2:27056180-27056199 | MS.gene79013:CDS | 25.0% |
| ! | TTCAGATCAGAAGAAAATAA+TGG | - | chr5.2:27053164-27053183 | MS.gene79013:intron | 25.0% |
| ! | TTTGGGCTTAATTAATGATT+TGG | - | chr5.2:27054394-27054413 | MS.gene79013:intron | 25.0% |
| ! | TTTGTGTATTTATGTCTTAG+TGG | + | chr5.2:27055938-27055957 | None:intergenic | 25.0% |
| !! | AGTGATGAAAAGTAGTTTTT+CGG | + | chr5.2:27055966-27055985 | None:intergenic | 25.0% |
| !! | ATTATTTTCTTCTGATCTGA+AGG | + | chr5.2:27053165-27053184 | None:intergenic | 25.0% |
| !! | TGATTTTCTCTTAAAATGAC+TGG | - | chr5.2:27055462-27055481 | MS.gene79013:CDS | 25.0% |
| !! | TTTATAGCTTTTGCTTAACA+TGG | - | chr5.2:27055763-27055782 | MS.gene79013:CDS | 25.0% |
| !!! | AAACTACTTTTCATCACTTT+TGG | - | chr5.2:27055968-27055987 | MS.gene79013:CDS | 25.0% |
| !!! | AAGAAGGTTTTTTAATCGTA+TGG | - | chr5.2:27054786-27054805 | MS.gene79013:intron | 25.0% |
| !!! | ATGTTTCATGTACTAGTTTT+TGG | - | chr5.2:27054376-27054395 | MS.gene79013:intron | 25.0% |
| !!! | GAGATGATATTTTGAAAGAT+AGG | - | chr5.2:27055545-27055564 | MS.gene79013:intron | 25.0% |
| !!! | GGTTTGCTTTATTTCATATT+TGG | - | chr5.2:27053610-27053629 | MS.gene79013:intron | 25.0% |
| !!! | GTCATTTTAAGAGAAAATCA+CGG | + | chr5.2:27055462-27055481 | None:intergenic | 25.0% |
| !!! | GTTATTTGTTGGTTACATTT+TGG | - | chr5.2:27054425-27054444 | MS.gene79013:intron | 25.0% |
| !!! | TCTGATTTAATGTCACTTTT+CGG | + | chr5.2:27055245-27055264 | None:intergenic | 25.0% |
| !!! | TGTTTCATGTACTAGTTTTT+GGG | - | chr5.2:27054377-27054396 | MS.gene79013:intron | 25.0% |
| !!! | TTTTTCCTCTATTTTTCTTG+AGG | + | chr5.2:27055376-27055395 | None:intergenic | 25.0% |
| AAAGCTAAAGCATGATTTCA+AGG | - | chr5.2:27056225-27056244 | MS.gene79013:CDS | 30.0% | |
| AAGCAAACCTTAGATTTCTT+TGG | + | chr5.2:27053599-27053618 | None:intergenic | 30.0% | |
| AATAATGGTATAGATCTGAG+CGG | - | chr5.2:27053179-27053198 | MS.gene79013:intron | 30.0% | |
| ACTAGGCTTAATTAATGATG+TGG | + | chr5.2:27054719-27054738 | None:intergenic | 30.0% | |
| AGAGGAAAACTACAAATAAG+GGG | + | chr5.2:27055319-27055338 | None:intergenic | 30.0% | |
| AGTGACATTAAATCAGAGAA+AGG | - | chr5.2:27055248-27055267 | MS.gene79013:CDS | 30.0% | |
| ATCTCTCATTATGGATAGTA+TGG | - | chr5.2:27054012-27054031 | MS.gene79013:CDS | 30.0% | |
| ATGATACTTATTGTGTTTGG+GGG | - | chr5.2:27055583-27055602 | MS.gene79013:intron | 30.0% | |
| CAGAGGAAAACTACAAATAA+GGG | + | chr5.2:27055320-27055339 | None:intergenic | 30.0% | |
| CTGCAGTTCATTGTTATATA+TGG | - | chr5.2:27054160-27054179 | MS.gene79013:intron | 30.0% | |
| GAAAAAAATAGTTTGGTCAG+AGG | + | chr5.2:27055337-27055356 | None:intergenic | 30.0% | |
| GCTAACAGATACTAACTTAA+GGG | + | chr5.2:27054481-27054500 | None:intergenic | 30.0% | |
| GGAAAAACCTAATACAAAAG+TGG | - | chr5.2:27055389-27055408 | MS.gene79013:CDS | 30.0% | |
| GTGACATTAAATCAGAGAAA+GGG | - | chr5.2:27055249-27055268 | MS.gene79013:CDS | 30.0% | |
| TCAGAGGAAAACTACAAATA+AGG | + | chr5.2:27055321-27055340 | None:intergenic | 30.0% | |
| TCTCTCATTATGGATAGTAT+GGG | - | chr5.2:27054013-27054032 | MS.gene79013:CDS | 30.0% | |
| TCTTAACAACACATTGAAGA+AGG | - | chr5.2:27054770-27054789 | MS.gene79013:intron | 30.0% | |
| TCTTATCATATGCTTTGTCA+AGG | + | chr5.2:27055067-27055086 | None:intergenic | 30.0% | |
| TTGACGAAAGATGACTTAAA+GGG | - | chr5.2:27054632-27054651 | MS.gene79013:intron | 30.0% | |
| TTTCGTAAAGAACGAATGTT+TGG | + | chr5.2:27056037-27056056 | None:intergenic | 30.0% | |
| ! | ACTTGGTTAAAACTGTGTTT+TGG | - | chr5.2:27055655-27055674 | MS.gene79013:CDS | 30.0% |
| ! | CATTATTTTCCCTATTCACA+GGG | + | chr5.2:27053712-27053731 | None:intergenic | 30.0% |
| ! | CTTTTGCCAAAACGTTAAAT+AGG | - | chr5.2:27054523-27054542 | MS.gene79013:intron | 30.0% |
| ! | TGATAATGATTCACTGTCAT+GGG | - | chr5.2:27052968-27052987 | MS.gene79013:CDS | 30.0% |
| ! | TTTTTACATATATCCTGGAC+AGG | - | chr5.2:27054249-27054268 | MS.gene79013:intron | 30.0% |
| !! | AGAGTACCTTCAATTTTGTT+TGG | + | chr5.2:27055431-27055450 | None:intergenic | 30.0% |
| !! | ATATATGATTGGTTTCACAG+TGG | + | chr5.2:27056093-27056112 | None:intergenic | 30.0% |
| !! | CTTTCTACCACTTTTGTATT+AGG | + | chr5.2:27055399-27055418 | None:intergenic | 30.0% |
| !! | GATATTTTGAAAGATAGGCA+GGG | - | chr5.2:27055550-27055569 | MS.gene79013:intron | 30.0% |
| !! | TGATATTTTGAAAGATAGGC+AGG | - | chr5.2:27055549-27055568 | MS.gene79013:intron | 30.0% |
| !! | TTGATAATGATTCACTGTCA+TGG | - | chr5.2:27052967-27052986 | MS.gene79013:CDS | 30.0% |
| !!! | ATTTCCCTTTTTAGTTGAAG+CGG | + | chr5.2:27053843-27053862 | None:intergenic | 30.0% |
| !!! | CTGATTTAATGTCACTTTTC+GGG | + | chr5.2:27055244-27055263 | None:intergenic | 30.0% |
| !!! | GATTACCGTTTATTTTGGAT+AGG | - | chr5.2:27053682-27053701 | MS.gene79013:intron | 30.0% |
| !!! | TGATTTAATGTCACTTTTCG+GGG | + | chr5.2:27055243-27055262 | None:intergenic | 30.0% |
| AGCTCATTACAAGAAGATTG+CGG | - | chr5.2:27053085-27053104 | MS.gene79013:intron | 35.0% | |
| ATAGGTTATCCCTGTGAATA+GGG | - | chr5.2:27053700-27053719 | MS.gene79013:intron | 35.0% | |
| ATATGCTTTGTCAAGGAAAG+AGG | + | chr5.2:27055060-27055079 | None:intergenic | 35.0% | |
| ATCAGCTCCAACTAAAACAT+TGG | - | chr5.2:27053811-27053830 | MS.gene79013:CDS | 35.0% | |
| CAAAACAAAGAAGAAACCAG+TGG | - | chr5.2:27053736-27053755 | MS.gene79013:intron | 35.0% | |
| CAAGTCGCAAATGATATTGT+TGG | + | chr5.2:27054920-27054939 | None:intergenic | 35.0% | |
| CTAACATATCTTAACACAGG+AGG | - | chr5.2:27056183-27056202 | MS.gene79013:CDS | 35.0% | |
| CTCTCATTATGGATAGTATG+GGG | - | chr5.2:27054014-27054033 | MS.gene79013:CDS | 35.0% | |
| CTTGGTTGAAGTTCTTGAAA+AGG | + | chr5.2:27054836-27054855 | None:intergenic | 35.0% | |
| GAGGAAAACTACAAATAAGG+GGG | + | chr5.2:27055318-27055337 | None:intergenic | 35.0% | |
| GGATCATCCAAAGAAATCTA+AGG | - | chr5.2:27053589-27053608 | MS.gene79013:intron | 35.0% | |
| GGCTAACAGATACTAACTTA+AGG | + | chr5.2:27054482-27054501 | None:intergenic | 35.0% | |
| GTTGACGAAAGATGACTTAA+AGG | - | chr5.2:27054631-27054650 | MS.gene79013:intron | 35.0% | |
| TAAATCAGAGAAAGGGAAAG+CGG | - | chr5.2:27055256-27055275 | MS.gene79013:CDS | 35.0% | |
| TAAGAGAAAATCACGGAATG+AGG | + | chr5.2:27055455-27055474 | None:intergenic | 35.0% | |
| TACGAGGAAATCTCTCATTA+TGG | - | chr5.2:27054003-27054022 | MS.gene79013:CDS | 35.0% | |
| TCAACTTTGCGGAAAGAAAA+TGG | - | chr5.2:27054310-27054329 | MS.gene79013:intron | 35.0% | |
| TCAGTCCTCAAGAAAAATAG+AGG | - | chr5.2:27055368-27055387 | MS.gene79013:CDS | 35.0% | |
| TCTCATTATGGATAGTATGG+GGG | - | chr5.2:27054015-27054034 | MS.gene79013:CDS | 35.0% | |
| TGGTCCCTTAAGTTATTTGT+TGG | - | chr5.2:27054414-27054433 | MS.gene79013:intron | 35.0% | |
| TGGTCCCTTAAGTTATTTGT+TGG | + | chr5.2:27054433-27054414 | None:intergenic | 35.0% | |
| TGTGTACAAAGAGACAGAAA+AGG | - | chr5.2:27053535-27053554 | MS.gene79013:intron | 35.0% | |
| TTACCAAAGTTCATCAGTTG+AGG | - | chr5.2:27053382-27053401 | MS.gene79013:intron | 35.0% | |
| TTCCAACTTCTTCAACTTTG+CGG | - | chr5.2:27054299-27054318 | MS.gene79013:intron | 35.0% | |
| TTTATTAGAAGGGCTGATCT+GGG | - | chr5.2:27056117-27056136 | MS.gene79013:CDS | 35.0% | |
| TTTCGGTCTAATGTGAAGTT+GGG | - | chr5.2:27055739-27055758 | MS.gene79013:CDS | 35.0% | |
| ! | AATTGAATCTGCTTGCTAGT+TGG | - | chr5.2:27055014-27055033 | MS.gene79013:intron | 35.0% |
| ! | CATGTGCCTATTTAACGTTT+TGG | + | chr5.2:27054532-27054551 | None:intergenic | 35.0% |
| ! | CTTTTGGTCGAATTGAGATT+TGG | - | chr5.2:27055984-27056003 | MS.gene79013:CDS | 35.0% |
| ! | GCATTATTTTCCCTATTCAC+AGG | + | chr5.2:27053713-27053732 | None:intergenic | 35.0% |
| ! | TCTTCTTCAACGGAAGTTTT+TGG | + | chr5.2:27054094-27054113 | None:intergenic | 35.0% |
| ! | TTGGCTGGTTAAAATTCTTC+TGG | + | chr5.2:27054075-27054094 | None:intergenic | 35.0% |
| ! | TTTATGCACACGTCTTTTTC+AGG | + | chr5.2:27053461-27053480 | None:intergenic | 35.0% |
| ! | TTTTGACCACGATAAGAAGT+TGG | + | chr5.2:27056262-27056281 | None:intergenic | 35.0% |
| ! | TTTTTGTATGATGACCCTCT+TGG | - | chr5.2:27055144-27055163 | MS.gene79013:CDS | 35.0% |
| !! | CTTTTCAAGAACTTCAACCA+AGG | - | chr5.2:27054834-27054853 | MS.gene79013:intron | 35.0% |
| !! | TGGAAGTTTTGTACGAACTT+TGG | - | chr5.2:27055217-27055236 | MS.gene79013:CDS | 35.0% |
| !! | TTGCAAGTGTCTGTTTCTTT+TGG | - | chr5.2:27052939-27052958 | MS.gene79013:CDS | 35.0% |
| !!! | CACTGGTTTCTTCTTTGTTT+TGG | + | chr5.2:27053738-27053757 | None:intergenic | 35.0% |
| AACCGTTAAGCCAATGTCTA+AGG | + | chr5.2:27054590-27054609 | None:intergenic | 40.0% | |
| ACTGACGGTGAGGATTTATT+TGG | + | chr5.2:27054503-27054522 | None:intergenic | 40.0% | |
| AGTTGAGGTGGAGAATAAAG+AGG | - | chr5.2:27053397-27053416 | MS.gene79013:intron | 40.0% | |
| ATCAAAAAGTCGCGCAGAAA+AGG | - | chr5.2:27056285-27056304 | MS.gene79013:CDS | 40.0% | |
| ATCGAACCATACAGTGTGTT+TGG | + | chr5.2:27055895-27055914 | None:intergenic | 40.0% | |
| CATAGACATGTGCAAAGATC+TGG | + | chr5.2:27053924-27053943 | None:intergenic | 40.0% | |
| CATTTCCTATGTTCCTGTGT+TGG | - | chr5.2:27055485-27055504 | MS.gene79013:CDS | 40.0% | |
| CGAAATCCAAACACACTGTA+TGG | - | chr5.2:27055886-27055905 | MS.gene79013:CDS | 40.0% | |
| CGAAGATCTGTCTTCTTCAA+CGG | + | chr5.2:27054104-27054123 | None:intergenic | 40.0% | |
| CGTTGAAGAAGACAGATCTT+CGG | - | chr5.2:27054102-27054121 | MS.gene79013:intron | 40.0% | |
| CTTCTCTTGAGCCAACAATT+CGG | + | chr5.2:27053120-27053139 | None:intergenic | 40.0% | |
| CTTTGCGGAAAGAAAATGGA+AGG | - | chr5.2:27054314-27054333 | MS.gene79013:intron | 40.0% | |
| GAAATTGAAATCAGCCTGGT+TGG | - | chr5.2:27053296-27053315 | MS.gene79013:intron | 40.0% | |
| GAGAATAAAGAGGTGGAAAG+TGG | - | chr5.2:27053407-27053426 | MS.gene79013:intron | 40.0% | |
| GATAGGTTATCCCTGTGAAT+AGG | - | chr5.2:27053699-27053718 | MS.gene79013:intron | 40.0% | |
| GCAAGAAATTGAAATCAGCC+TGG | - | chr5.2:27053292-27053311 | MS.gene79013:intron | 40.0% | |
| GCGTCTCCAAACAAAATTGA+AGG | - | chr5.2:27055422-27055441 | MS.gene79013:CDS | 40.0% | |
| GTTTATTAGAAGGGCTGATC+TGG | - | chr5.2:27056116-27056135 | MS.gene79013:CDS | 40.0% | |
| GTTTCGGTCTAATGTGAAGT+TGG | - | chr5.2:27055738-27055757 | MS.gene79013:CDS | 40.0% | |
| TATGGATAGTATGGGGGATA+AGG | - | chr5.2:27054021-27054040 | MS.gene79013:CDS | 40.0% | |
| TCGGTAAAACAGCAGGTAAT+TGG | - | chr5.2:27054121-27054140 | MS.gene79013:intron | 40.0% | |
| TGTGTATCCACCTTAGACAT+TGG | - | chr5.2:27054577-27054596 | MS.gene79013:intron | 40.0% | |
| TTCCGCAAAGTTGAAGAAGT+TGG | + | chr5.2:27054304-27054323 | None:intergenic | 40.0% | |
| TTCGGTATTTCCAACACTCA+AGG | - | chr5.2:27053245-27053264 | MS.gene79013:intron | 40.0% | |
| TTCTTGCTTATCGCATTCCT+CGG | + | chr5.2:27053279-27053298 | None:intergenic | 40.0% | |
| TTGCACATGTCTATGAGCTT+AGG | - | chr5.2:27053929-27053948 | MS.gene79013:intron | 40.0% | |
| ! | ATCTGCCGCTTCAACTAAAA+AGG | - | chr5.2:27053835-27053854 | MS.gene79013:CDS | 40.0% |
| ! | GTCGAAATTTGAGATGCCTT+AGG | + | chr5.2:27053770-27053789 | None:intergenic | 40.0% |
| ! | TCTGCCGCTTCAACTAAAAA+GGG | - | chr5.2:27053836-27053855 | MS.gene79013:CDS | 40.0% |
| ! | TCTTTTCTCCATCCTCTCAA+CGG | + | chr5.2:27055195-27055214 | None:intergenic | 40.0% |
| !! | ACCACGATAAGAAGTTGGTA+GGG | + | chr5.2:27056257-27056276 | None:intergenic | 40.0% |
| !! | ACGTTTTGGCAAAAGACTGA+CGG | + | chr5.2:27054518-27054537 | None:intergenic | 40.0% |
| !! | CACCTTAGACATTGGCTTAA+CGG | - | chr5.2:27054585-27054604 | MS.gene79013:intron | 40.0% |
| !! | GATGTAGGCTTTGAACTTCT+CGG | + | chr5.2:27053794-27053813 | None:intergenic | 40.0% |
| !! | TGTGAGACTGATTCGGAATT+CGG | - | chr5.2:27053227-27053246 | MS.gene79013:intron | 40.0% |
| !!! | CATTGGCTTAACGGTTTTGA+CGG | - | chr5.2:27054594-27054613 | MS.gene79013:intron | 40.0% |
| !!! | GCAGATGCCAATGTTTTAGT+TGG | + | chr5.2:27053821-27053840 | None:intergenic | 40.0% |
| !!! | GTTTTAGTTGGAGCTGATGT+AGG | + | chr5.2:27053809-27053828 | None:intergenic | 40.0% |
| AGAGATTTCCTCGTAGTACG+AGG | + | chr5.2:27053998-27054017 | None:intergenic | 45.0% | |
| ATTACAAGAAGATTGCGGCC+CGG | - | chr5.2:27053090-27053109 | MS.gene79013:intron | 45.0% | |
| ATTCACTGTCATGGGAGAGA+TGG | - | chr5.2:27052976-27052995 | MS.gene79013:CDS | 45.0% | |
| CACTTAAGTGAAGCCAACAC+AGG | + | chr5.2:27055501-27055520 | None:intergenic | 45.0% | |
| CAGATCTTCGGTAAAACAGC+AGG | - | chr5.2:27054114-27054133 | MS.gene79013:intron | 45.0% | |
| CCAAAGTTCATCAGTTGAGG+TGG | - | chr5.2:27053385-27053404 | MS.gene79013:intron | 45.0% | |
| CCACCTCAACTGATGAACTT+TGG | + | chr5.2:27053388-27053407 | None:intergenic | 45.0% | |
| CGTTAAGCCAATGTCTAAGG+TGG | + | chr5.2:27054587-27054606 | None:intergenic | 45.0% | |
| CGTTGAAGCTGAAGATGTGA+AGG | - | chr5.2:27053499-27053518 | MS.gene79013:intron | 45.0% | |
| CTTAACACAGGAGGAAAGAG+AGG | - | chr5.2:27056192-27056211 | MS.gene79013:CDS | 45.0% | |
| GAATTCCGAATCAGTCTCAC+AGG | + | chr5.2:27053228-27053247 | None:intergenic | 45.0% | |
| GAGAGGATGGAGAAAAGAAG+TGG | - | chr5.2:27055197-27055216 | MS.gene79013:CDS | 45.0% | |
| GAGGCAAGTTACTTCTAGTG+TGG | - | chr5.2:27053880-27053899 | MS.gene79013:intron | 45.0% | |
| GAGTCATGCGGATGATTTGA+AGG | - | chr5.2:27053331-27053350 | MS.gene79013:intron | 45.0% | |
| GGTACAACTACCTTGAGTGT+TGG | + | chr5.2:27053258-27053277 | None:intergenic | 45.0% | |
| GGTATAGATCTGAGCGGTAA+TGG | - | chr5.2:27053185-27053204 | MS.gene79013:intron | 45.0% | |
| GGTTCAGTAGTATGAGGAAC+TGG | + | chr5.2:27053971-27053990 | None:intergenic | 45.0% | |
| GTAGTATGAGGAACTGGATC+AGG | + | chr5.2:27053965-27053984 | None:intergenic | 45.0% | |
| TAACGCCTGTGAGACTGATT+CGG | - | chr5.2:27053220-27053239 | MS.gene79013:intron | 45.0% | |
| TCAAGAGAAGGAGATGGAGA+GGG | - | chr5.2:27053130-27053149 | MS.gene79013:intron | 45.0% | |
| TCATGCGGATGATTTGAAGG+AGG | - | chr5.2:27053334-27053353 | MS.gene79013:intron | 45.0% | |
| TGAAGCCAACACAGGAACAT+AGG | + | chr5.2:27055493-27055512 | None:intergenic | 45.0% | |
| TGAGGTGGAGAATAAAGAGG+TGG | - | chr5.2:27053400-27053419 | MS.gene79013:intron | 45.0% | |
| ! | AGTAACTTGCCTCCTAGGTA+AGG | + | chr5.2:27053873-27053892 | None:intergenic | 45.0% |
| ! | CTAGAAGTAACTTGCCTCCT+AGG | + | chr5.2:27053878-27053897 | None:intergenic | 45.0% |
| ! | GACCACGATAAGAAGTTGGT+AGG | + | chr5.2:27056258-27056277 | None:intergenic | 45.0% |
| ! | GATCTGAGCGGTAATGGTAA+CGG | - | chr5.2:27053191-27053210 | MS.gene79013:intron | 45.0% |
| ! | GGAACTGGTTCAGTAGTATG+AGG | + | chr5.2:27053977-27053996 | None:intergenic | 45.0% |
| ! | TTCTTCTGTGCTACTGATCC+AGG | + | chr5.2:27053053-27053072 | None:intergenic | 45.0% |
| !! | ATAAGAAGTTGGTAGGGGTG+TGG | + | chr5.2:27056251-27056270 | None:intergenic | 45.0% |
| !! | ATCAGCCTGGTTGGTGAAAT+CGG | - | chr5.2:27053305-27053324 | MS.gene79013:intron | 45.0% |
| !! | CCACGATAAGAAGTTGGTAG+GGG | + | chr5.2:27056256-27056275 | None:intergenic | 45.0% |
| !! | CGAATTGTTGGCTCAAGAGA+AGG | - | chr5.2:27053118-27053137 | MS.gene79013:intron | 45.0% |
| !!! | CTTCAACGGAAGTTTTTGGC+TGG | + | chr5.2:27054090-27054109 | None:intergenic | 45.0% |
| AACCAGTTCCTCGTACTACG+AGG | - | chr5.2:27053987-27054006 | MS.gene79013:CDS | 50.0% | |
| ACCAGTGGCAGCAAAACCTA+AGG | - | chr5.2:27053751-27053770 | MS.gene79013:intron | 50.0% | |
| AGCCAACAATTCGGCTTTCC+GGG | + | chr5.2:27053111-27053130 | None:intergenic | 50.0% | |
| CACTCAAGGTAGTTGTACCG+AGG | - | chr5.2:27053259-27053278 | MS.gene79013:intron | 50.0% | |
| CCCCTACCAACTTCTTATCG+TGG | - | chr5.2:27056253-27056272 | MS.gene79013:CDS | 50.0% | |
| CTCAAGAGAAGGAGATGGAG+AGG | - | chr5.2:27053129-27053148 | MS.gene79013:intron | 50.0% | |
| GAAATCCGCAGTCCTTACCT+AGG | - | chr5.2:27053858-27053877 | MS.gene79013:intron | 50.0% | |
| GAGCCAACAATTCGGCTTTC+CGG | + | chr5.2:27053112-27053131 | None:intergenic | 50.0% | |
| GAGGTGGAAAGTGGATCACA+TGG | - | chr5.2:27053416-27053435 | MS.gene79013:intron | 50.0% | |
| GGAACTGGATCAGGCTTACT+TGG | + | chr5.2:27053956-27053975 | None:intergenic | 50.0% | |
| GGATGATTTGAAGGAGGAGG+AGG | - | chr5.2:27053340-27053359 | MS.gene79013:intron | 50.0% | |
| TCAGAGAAAGGGAAAGCGGT+AGG | - | chr5.2:27055260-27055279 | MS.gene79013:CDS | 50.0% | |
| TGAAATCGGCAGGAGTCATG+CGG | - | chr5.2:27053319-27053338 | MS.gene79013:intron | 50.0% | |
| TGCGGATGATTTGAAGGAGG+AGG | - | chr5.2:27053337-27053356 | MS.gene79013:intron | 50.0% | |
| TTCCTCGTAGTACGAGGAAC+TGG | + | chr5.2:27053992-27054011 | None:intergenic | 50.0% | |
| TTGGCAAAAGACTGACGGTG+AGG | + | chr5.2:27054513-27054532 | None:intergenic | 50.0% | |
| ! | GGCTGATCTGGGATATGAGA+TGG | - | chr5.2:27056128-27056147 | MS.gene79013:CDS | 50.0% |
| ! | GTTGAGAAGTGTGCTACACC+TGG | - | chr5.2:27053032-27053051 | MS.gene79013:intron | 50.0% |
| ! | GTTGGCTCAAGAGAAGGAGA+TGG | - | chr5.2:27053124-27053143 | MS.gene79013:intron | 50.0% |
| !! | CTTAACGGTTTTGACGGTGG+GGG | - | chr5.2:27054600-27054619 | MS.gene79013:intron | 50.0% |
| !! | GCTTAACGGTTTTGACGGTG+GGG | - | chr5.2:27054599-27054618 | MS.gene79013:intron | 50.0% |
| !! | GGCTTAACGGTTTTGACGGT+GGG | - | chr5.2:27054598-27054617 | MS.gene79013:intron | 50.0% |
| !! | TGGCTTAACGGTTTTGACGG+TGG | - | chr5.2:27054597-27054616 | MS.gene79013:intron | 50.0% |
| AGAAGGAGATGGAGAGGGAG+AGG | - | chr5.2:27053135-27053154 | MS.gene79013:intron | 55.0% | |
| ATAGGCCTGCTACCGTTGAG+AGG | - | chr5.2:27055180-27055199 | MS.gene79013:CDS | 55.0% | |
| ATCCGCAGTCCTTACCTAGG+AGG | - | chr5.2:27053861-27053880 | MS.gene79013:intron | 55.0% | |
| ATCCTGGACAGGCTCCTTCA+AGG | - | chr5.2:27054260-27054279 | MS.gene79013:intron | 55.0% | |
| GAAGGAGATGGAGAGGGAGA+GGG | - | chr5.2:27053136-27053155 | MS.gene79013:intron | 55.0% | |
| GAAGGAGGAGGAGGAAGTTG+CGG | - | chr5.2:27053349-27053368 | MS.gene79013:intron | 55.0% | |
| GGAGGAGGAAGTTGCGGTTT+CGG | - | chr5.2:27053355-27053374 | MS.gene79013:intron | 55.0% | |
| TCCATCCTCTCAACGGTAGC+AGG | + | chr5.2:27055188-27055207 | None:intergenic | 55.0% | |
| TCCTGGACAGGCTCCTTCAA+GGG | - | chr5.2:27054261-27054280 | MS.gene79013:intron | 55.0% | |
| TGCCTCCTAGGTAAGGACTG+CGG | + | chr5.2:27053866-27053885 | None:intergenic | 55.0% | |
| TTCAAGGGGGACTGCGTCAA+AGG | - | chr5.2:27054276-27054295 | MS.gene79013:intron | 55.0% | |
| TTTGACGCAGTCCCCCTTGA+AGG | + | chr5.2:27054277-27054296 | None:intergenic | 55.0% | |
| ! | GCCTTAGGTTTTGCTGCCAC+TGG | + | chr5.2:27053755-27053774 | None:intergenic | 55.0% |
| !! | TCCTGCCGATTTCACCAACC+AGG | + | chr5.2:27053313-27053332 | None:intergenic | 55.0% |
| CCTGGACAGGCTCCTTCAAG+GGG | - | chr5.2:27054262-27054281 | MS.gene79013:intron | 60.0% | |
| CTGGACAGGCTCCTTCAAGG+GGG | - | chr5.2:27054263-27054282 | MS.gene79013:intron | 60.0% | |
| GCCTGCTACCGTTGAGAGGA+TGG | - | chr5.2:27055184-27055203 | MS.gene79013:CDS | 60.0% | |
| GGCCCGGAAAGCCGAATTGT+TGG | - | chr5.2:27053106-27053125 | MS.gene79013:intron | 60.0% | |
| !! | GCCTGGTTGGTGAAATCGGC+AGG | - | chr5.2:27053309-27053328 | MS.gene79013:intron | 60.0% |
| CCCCTTGAAGGAGCCTGTCC+AGG | + | chr5.2:27054265-27054284 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 27052909 | 27056330 | 27052909 | ID=MS.gene79013 |
| chr5.2 | mRNA | 27052909 | 27056330 | 27052909 | ID=MS.gene79013.t1;Parent=MS.gene79013 |
| chr5.2 | exon | 27055629 | 27056330 | 27055629 | ID=MS.gene79013.t1.exon1;Parent=MS.gene79013.t1 |
| chr5.2 | CDS | 27055629 | 27056330 | 27055629 | ID=cds.MS.gene79013.t1;Parent=MS.gene79013.t1 |
| chr5.2 | exon | 27055104 | 27055535 | 27055104 | ID=MS.gene79013.t1.exon2;Parent=MS.gene79013.t1 |
| chr5.2 | CDS | 27055104 | 27055535 | 27055104 | ID=cds.MS.gene79013.t1;Parent=MS.gene79013.t1 |
| chr5.2 | exon | 27054904 | 27054968 | 27054904 | ID=MS.gene79013.t1.exon3;Parent=MS.gene79013.t1 |
| chr5.2 | CDS | 27054904 | 27054968 | 27054904 | ID=cds.MS.gene79013.t1;Parent=MS.gene79013.t1 |
| chr5.2 | exon | 27053962 | 27054055 | 27053962 | ID=MS.gene79013.t1.exon4;Parent=MS.gene79013.t1 |
| chr5.2 | CDS | 27053962 | 27054055 | 27053962 | ID=cds.MS.gene79013.t1;Parent=MS.gene79013.t1 |
| chr5.2 | exon | 27053796 | 27053867 | 27053796 | ID=MS.gene79013.t1.exon5;Parent=MS.gene79013.t1 |
| chr5.2 | CDS | 27053796 | 27053867 | 27053796 | ID=cds.MS.gene79013.t1;Parent=MS.gene79013.t1 |
| chr5.2 | exon | 27052909 | 27053037 | 27052909 | ID=MS.gene79013.t1.exon6;Parent=MS.gene79013.t1 |
| chr5.2 | CDS | 27052909 | 27053037 | 27052909 | ID=cds.MS.gene79013.t1;Parent=MS.gene79013.t1 |
| Gene Sequence |
| Protein sequence |
