AlfalfaGEDB | MS.gene58579

M. sativa cultivar XinJiangDaYe / MS.gene58579

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58579.t1	RHN55186.1	83.2	512	70	3	1	499	112	620	5.90E-183	650.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58579.t1	Q67Y69	60.7	61	24	0	8	68	16	76	2.2e-13	78.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58579.t1	G7K5M5	83.2	512	70	3	1	499	1	509	4.3e-183	650.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene58579	0.812608	3.89E-51	-1.69E-46
MS.gene049178	MS.gene58579	0.808325	3.27E-50	-1.69E-46
MS.gene049786	MS.gene58579	0.800128	1.67E-48	-1.69E-46
MS.gene050439	MS.gene58579	0.818627	1.78E-52	-1.69E-46
MS.gene051102	MS.gene58579	0.821845	3.25E-53	-1.69E-46
MS.gene051852	MS.gene58579	0.810315	1.23E-50	-1.69E-46
MS.gene054576	MS.gene58579	0.810197	1.30E-50	-1.69E-46
MS.gene055469	MS.gene58579	0.826785	2.24E-54	-1.69E-46
MS.gene056181	MS.gene58579	0.838656	2.53E-57	-1.69E-46
MS.gene056638	MS.gene58579	0.8079	4.03E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene58579	MS.gene45165	PPI
MS.gene58579	MS.gene027495	PPI
MS.gene58579	MS.gene79013	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58579.t1	MTR_5g036560	91.016	512	30	3	1	499	1	509	0.0	898
MS.gene58579.t1	MTR_3g086090	32.249	338	172	13	10	316	31	342	1.44e-23	104
MS.gene58579.t1	MTR_3g086090	34.524	252	124	10	10	244	12	239	8.51e-22	99.4
MS.gene58579.t1	MTR_3g086090	34.524	252	124	10	10	244	31	258	9.56e-22	99.4
MS.gene58579.t1	MTR_6g022230	67.857	56	18	0	7	62	27	82	5.13e-19	90.5
MS.gene58579.t1	MTR_0117s0080	64.151	53	19	0	10	62	35	87	2.48e-17	84.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58579.t1	AT1G70100	37.945	506	208	24	6	457	20	473	1.96e-58	201
MS.gene58579.t1	AT1G70100	37.945	506	208	24	6	457	20	473	2.17e-57	199
MS.gene58579.t1	AT1G70100	37.945	506	208	24	6	457	20	473	2.17e-57	199
MS.gene58579.t1	AT1G70100	37.755	490	203	24	6	441	20	461	4.54e-55	191
MS.gene58579.t1	AT1G70100	37.755	490	203	24	6	441	20	461	4.54e-55	191
MS.gene58579.t1	AT1G70100	37.755	490	203	24	6	441	20	461	4.54e-55	191
MS.gene58579.t1	AT1G24160	46.569	204	88	7	6	209	30	212	3.86e-38	147
MS.gene58579.t1	AT1G24160	46.569	204	88	7	6	209	30	212	3.86e-38	147
MS.gene58579.t1	AT3G26050	52.564	78	37	0	8	85	28	105	1.31e-19	92.4
MS.gene58579.t1	AT3G27350	64.516	62	21	1	10	70	30	91	2.32e-18	85.5

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Find 110 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTAAAGCATGATTTCA+AGG	0.446740	5.3:-24974171	MS.gene58579:CDS
AACCAGTTCCTCGTACTATG+AGG	0.558590	5.3:-24976156	MS.gene58579:CDS
AAGCAAACCTTAGATTTCTT+TGG	0.233076	5.3:+24976547	None:intergenic
AATAATGGTATAGATCTGAG+CGG	0.762921	5.3:-24976964	MS.gene58579:CDS
ACAACTTTGCGGAAAGAAAA+TGG	0.230318	5.3:-24975834	MS.gene58579:CDS
ACCACGATAAGAAGTTGTTA+GGG	0.483102	5.3:+24974142	None:intergenic
ACCACTTGTGCAGCTATCGA+CGG	0.610344	5.3:+24972675	None:intergenic
ACCAGTGGCAGCAAAACCTA+AGG	0.581842	5.3:-24976392	MS.gene58579:CDS
ACTTCTTCCAAATACTTATT+TGG	0.140230	5.3:+24977132	None:intergenic
AGAAGGAGATGGAGAGGGAG+AGG	0.454029	5.3:-24977008	MS.gene58579:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGCTAAAGCATGATTTCA+AGG	-	chr5.3:24975751-24975770	MS.gene58579:intron	30.0%
AACAACTGATAATTGGAGTT+TGG	-	chr5.3:24976042-24976061	MS.gene58579:CDS	30.0%
AACACAATAAGACCTTAGAA+TGG	+	chr5.3:24977162-24977181	None:intergenic	30.0%
AAGCAAACCTTAGATTTCTT+TGG	+	chr5.3:24973378-24973397	None:intergenic	30.0%
AATAATGGTATAGATCTGAG+CGG	-	chr5.3:24972958-24972977	MS.gene58579:intron	30.0%
AGAATAGACATAAAAATGGG+AGG	+	chr5.3:24976308-24976327	None:intergenic	30.0%
AGTGACATTAAATCAGAGAA+AGG	-	chr5.3:24974719-24974738	MS.gene58579:intron	30.0%
ATAACTGCAGTTCATTGTTA+TGG	-	chr5.3:24973935-24973954	MS.gene58579:intron	30.0%
ATCTCTCATTATGGATAGTA+TGG	-	chr5.3:24973791-24973810	MS.gene58579:intron	30.0%
ATGATACTTATTGTGTTTGG+GGG	-	chr5.3:24975054-24975073	MS.gene58579:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	24972688	24977256	24972688	ID=MS.gene58579
chr5.3	mRNA	24972688	24977256	24972688	ID=MS.gene58579.t1;Parent=MS.gene58579
chr5.3	exon	24976555	24977256	24976555	ID=MS.gene58579.t1.exon1;Parent=MS.gene58579.t1
chr5.3	CDS	24976555	24977256	24976555	ID=cds.MS.gene58579.t1;Parent=MS.gene58579.t1
chr5.3	exon	24976030	24976461	24976030	ID=MS.gene58579.t1.exon2;Parent=MS.gene58579.t1
chr5.3	CDS	24976030	24976461	24976030	ID=cds.MS.gene58579.t1;Parent=MS.gene58579.t1
chr5.3	exon	24975831	24975895	24975831	ID=MS.gene58579.t1.exon3;Parent=MS.gene58579.t1
chr5.3	CDS	24975831	24975895	24975831	ID=cds.MS.gene58579.t1;Parent=MS.gene58579.t1
chr5.3	exon	24975196	24975289	24975196	ID=MS.gene58579.t1.exon4;Parent=MS.gene58579.t1
chr5.3	CDS	24975196	24975289	24975196	ID=cds.MS.gene58579.t1;Parent=MS.gene58579.t1
chr5.3	exon	24975030	24975101	24975030	ID=MS.gene58579.t1.exon5;Parent=MS.gene58579.t1
chr5.3	CDS	24975030	24975101	24975030	ID=cds.MS.gene58579.t1;Parent=MS.gene58579.t1
chr5.3	exon	24974112	24974216	24974112	ID=MS.gene58579.t1.exon6;Parent=MS.gene58579.t1
chr5.3	CDS	24974112	24974216	24974112	ID=cds.MS.gene58579.t1;Parent=MS.gene58579.t1
chr5.3	exon	24972688	24972717	24972688	ID=MS.gene58579.t1.exon7;Parent=MS.gene58579.t1
chr5.3	CDS	24972688	24972717	24972688	ID=cds.MS.gene58579.t1;Parent=MS.gene58579.t1

Gene Sequence

>MS.gene58579

ATGGGAGAGACAACAGCATCAAATTCTGCTTTGCAAGTGTCTGTTTCTTTTGGTAGATTTGATAATGATTCACTGTCATGGGAGAGATGGTCTTCATTCTCTCCAAATAAGTATTTGGAAGAAGTTGAGAAGTGTGCTACACCTGGATCAGTAGCACAGAAGAAAGCTTACTTTGAAGCTCATTACAAGAAGATTGCGGCCCGGAAAGCCGAATTGTTGGCTCAAGAGAAGGAGATGGAGAGGGAGAGGGATTCTTTCAGATCAGAAGAAAATAATGGTATAGATCTGAGCGGTAATGGTAACGGTAACAGTAACGCCTGTGAGACTGATTCGGAATTCTGTATTTCCAACACTCAAGGTAGTTGTACCGAGGAACGCGATAAGCAAGAAATTGAAATCAGCCCGGTTGGTGATATCGGCAGGAGTCATGCGGATGATTTGAAGGAGGAGGAGGAAGTTGCGGTTTTGGTAGATTACCAAAGTTCATCAGTTGAGGTGGAGAATAAAGAGGTGGAAAGTGGATCACATGGTTCGTACAAGATAGACGAACCTGAAAAAGACGTGTGCATAAAACTAGAAGAAATTCTTGACGTTGAAGCTGAAGATGTGAAGGAAATTTCTCATGTTGTGTACAAAGAGACAGAAAAGGCTTCACAAGTTGAAGAAAAAGATGTGAAATTGGATCATCCAAAGAAATCTAAGGTTTGCTTTATTTCATATTTGGTTAAATCATATGTATTCATAATGTTAAATTTTTTAAAGGTTGAGTATTTGATTACCGTTTATTTTGGATAGGTTATCCCTGTGAATAGGGAAAATAATGCAGCCAAAACAAAGAAGAAACCAGTGGCAGCAAAACCTAAGGCATCTCAAATTTCGACACCGAGAAGTTCAAAGCCTACATCAGCTCCAACTAAAACATTGGCATCTGCCGCTTCAACTAAAAAGGGAAATCCGCAGTCCTTACCTAGGAGGCAAGTTACTTCTAGTGTGGAGAACAAAAAAGTCGCGACCAGATCTTTGCACATGTCTATGAGCTTAGGTCCAAGTAAGCCTGATCCAGTTCCTCATACTACTGAACCAGTTCCTCGTACTATGAGGAAATCTCTCATTATGGATAGTATGGGGGATAAGGACATAGTCAAACGAGCATTTAAGACTTTCCAGAAGAATTTTAACCAGCCAAAAACTTCCGTAGAAGAAGACAGATCTTCAGTAATAAAGCAGGTAATTGGAAAATATTTATGATAACTGCAGTTCATTGTTATGGATGGTGATAAATTTGGTGCAGTATAAATGCATGTTTATCTGTTGTAAAATAAAATTGATTTGAAAATGATTTTTTACATATATCCTGACAGGCTCCTCCAAGGGGGACTGCGTCGAAGGTTCCAACTTCTACAACTTTGCGGAAAGAAAATGGAAGGTAAATTATTGAATTGGCACTTTTATTGTTTTATGGCACATGTTTCATGTACTATTTTTTGTTTATAAATTTCATACTATTAATGCATCTTAACAACACATTGAAGAAGGTTTTTTAATCGTATGGCGTCATATATTTTGTTTCTAGCTTCCTTTTGGAGAACTTCAACCAAGGAATCTATATATAAATTGTGATTCAAATTGATTTGAACATATTTATATCTTTAGATTTTATCCAACAATATCATTTGCGACTTGAACTGAATTTCTCCTTTAGATGAAATGTATTGTACTTCGTAAACGGCTACGAAAACAACCATTGTGTTAAGTATTGAATTGAATCGCGATTTTAATAAATTTCATTTTAGCTTTTTCAAAAAAAAAAAAAAAAAGTATTGAATTGAATCTGCTTGCTAGTTGGATTTTATGAAATATATCAAACCTCTTTCCTTGACAAAGCATATGATAAGATTTCTATGAAACAAATCTAATAAGCTCTATTTTGATGAAATTGTATGGAATTAATTTTTTTTTGTGAATAGGCCTGCTACCGCTGAGAGGATGGAGAAAAGAAGTGGAAGTGTTGTACAAACTTTGGCCCCGAAAAGTGACATTAAATCAGAGAAAGGGAAAGCGGTAGGACTATCTCCTGTGATGTTTAAAATTGAAAGTACCCCCTTATTTGTAGTTTTCTTCTGACCAAACTATTTTTTTCTTTCATCTATATCAGTCCTCAAGAAAAATAGAGGAAAAACCTAATACAAAAGTGGTAGAAAGAACGCGTCTCCAAACAAAATTGAAGGTACTCTTCCTCATTCCGTGATTTTCTATTAAAATGACTGGCATTTCCTATATTCCTGTGTTGGCTTCACTTAAGTGTCTGCTTATGTTTATAGTGTATTAGAGATGATATTTTGAAAGATAGGCAGGGCAATGAATCAATGATACTTATTGTGTTTGGGGGAGCATTTGATAAAATGAGAATTTAAACAAAATTGATTTTTTTTAAAATCGACTTGGTTAAAACTGTGTTTTGGATTAAGTCATTTATATTTGAGTGTTTTAGTCTAGAAGCAAATTCAATATATTTTTGTAATGTTTCGGTTTAATTTAGGGAGACATAAAAGTGATTGTAGGAGCATAGGATTGATTTTGGCATGTTTAAGTGTCATTCAATAATAACGGTCTTGCTTCAAAATAGATTCTAATGTGAAGTTGGGATTTATAGCTTTTGCTTAACATGGATTCATCACTCTCACTTCACAAAGCATTCTACTCACCATGAATTTATAAAGCTAGAAACTGGAGCTTCTTGCTCAAATCACGACCGCGCTGTGATTTTTGCGAAATCCAAACACACTGTATGGTTCAATTCATTAAAACTACTTTTCATCACTTTTGGTCGAATTGAGGTTTGGATACAAAATCAATTTTGCTAACAGTAACCAAACATTCGTTCTTTACGAAAATCATGCTTGATAGAGAAAATAAATTCTGATAATTTCCACTGTGAAACCAATCATGTATTTAGTTTATAGAAGGGCTGATATGGGATATGAGTTGGACATTCTATTTTAATCTATATAATATGCATGACTAACATATCTCAACACAGAAGGAAAAAGAGGCAGAGATGAAAAAGCTAAAGCATGATTTCAAGGCCACACCCCTAACAACTTCTTATCGTGGTCAAAAAGTATCAAAAAGTCGCGCAGAAAAGGTACGTGTTATACATCTGAACTGATAAGTGATATCTTCCATATTCACATCTGAAATGGAAAGTTATATGTTGCTTAAGGATATATAAAACAACCTTAAAAATAACTTTTTGGTATCAGCTGACTATTGATTGCGTTCTTGAGAGATGTGTGAAAACGACTAATTATCTGAAACTTTACTTTTAATTGAAGTCAGTCAAATCTTGTGTTTAACAACTGATAATTGGAGTTTGGTGATAGTAATCAAGTTAGGGAGACCTATGGGACCTGGCTGTCTTGTTTTGGTTATAAAAAATAAACATGTTTCCTGCCAAATGAGCATGTGTTGGTGGTCCATACTAGAAATAATGATGAAATTTATTTTTTTACAGTTAAACAAGAATTGTAGGATTATTATACCCTAAAAAGTGGTAAAATTTTCATATGAGAGGGAGACATGCTATCTCTCAGTATTCAAGTTTGGAAGAGGTGGACCCTCCCATTTTTATGTCTATTCTGAATTTTCAGAGATTACACTTCTCCCTCATGTCAAAATGTCACACGAGTGAATCCATTCCCCTAAGCAATGCTATCAACCTCTGCTATTTCTTATCAAACCATCTAAATAATTTTCTAAGAAATGTTCGTAACACACCCTCAAATTTTTTTTTTTTTGAGGTAAAGTAACACACCCTCTATTATTAAGTAAAAGTCGCATGGGTCTTATTAATTAAGGATTGGGTCCGACGAAATAAAAAACAAGTTCCACATGAATTTCACTCAATAATAAGAAAATATAATGTTGAAAAAGTGTTATAAGAGTACTATATTGATATTATTCCTAGACTATCACTAAAAGCATAGGTTGAATATGGTTTGGAATATGTGGTGACATGTTTGGCAATTTTGTACAAAATTGATTTTAACTTAAAACCATGATCTTGTTATCATAATGTGAACAAATAAAATATTTCTTTTCGGCAAAGGAAAATCATGTTTGATATATATTGGCAAAATTACCCTCATATTTTAACAATATCTTATTTCTTTAACAATAATTATATATCCATATTAATAATGTTGCATCTAAAAGGGATGTTTTGTCAGCACTATCCAAATAATGTTCATTATGTAAAAATTACTTTTCACTCAAATTTTCCAAAAGTCAATCAACTCACTCTATTCGTGACTAAAATCAATTTTGCCAAAGTTCAACCAAAATCAAATTTACAAACTCTAATCCAAACATACACCAGGTTTTCTAAATTCAACTTAAATGCAAAATCTAGGTCTTGTTGGCTTCTGGTTCATTGTCCTTACACTTAATGGTCGACAGTTCACATTGTACTCCATTCTAAGGTCTTATTGTGTTCCATTGAGTTCTGACAATGTCCTGTTTTCATGACTACTCTTGCAGGTAGATGCTAAGACTGAGAGCCGTCGATAG

Protein sequence

>MS.gene58579.t1

MGETTASNSALQVSVSFGRFDNDSLSWERWSSFSPNKYLEEVEKCATPGSVAQKKAYFEAHYKKIAARKAELLAQEKEMERERDSFRSEENNGIDLSGNGNGNSNACETDSEFCISNTQGSCTEERDKQEIEISPVGDIGRSHADDLKEEEEVAVLVDYQSSSVEVENKEVESGSHGSYKIDEPEKDVCIKLEEILDVEAEDVKEISHVVYKETEKASQVEEKDVKLDHPKKSKVIPVNRENNAAKTKKKPVAAKPKASQISTPRSSKPTSAPTKTLASAASTKKGNPQSLPRRQVTSSVENKKVATRSLHMSMSLGPSKPDPVPHTTEPVPRTMRKSLIMDSMGDKDIVKRAFKTFQKNFNQPKTSVEEDRSSVIKQAPPRGTASKVPTSTTLRKENGRPATAERMEKRSGSVVQTLAPKSDIKSEKGKASSRKIEEKPNTKVVERTRLQTKLKKEKEAEMKKLKHDFKATPLTTSYRGQKVSKSRAEKVDAKTESRR