AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79461

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79461.t1 MTR_8g099750 96.537 231 4 1 1 231 1 227 6.00e-168 462
MS.gene79461.t1 MTR_3g098810 65.258 213 65 3 1 204 1 213 4.10e-94 276
MS.gene79461.t1 MTR_3g098810 75.510 147 34 1 1 145 1 147 1.58e-78 234
MS.gene79461.t1 MTR_7g005280 60.795 176 60 3 1 175 1 168 1.59e-73 224
MS.gene79461.t1 MTR_4g081870 50.307 163 74 4 12 171 7 165 2.77e-51 167
MS.gene79461.t1 MTR_2g080010 47.191 178 77 4 14 183 15 183 3.09e-50 167
MS.gene79461.t1 MTR_7g100990 48.447 161 78 3 13 171 10 167 1.60e-49 165
MS.gene79461.t1 MTR_7g085220 46.821 173 76 5 12 172 6 174 1.85e-49 165
MS.gene79461.t1 MTR_5g041940 51.592 157 71 3 14 168 3 156 4.66e-49 161
MS.gene79461.t1 MTR_4g089135 45.856 181 72 3 13 170 14 191 1.27e-48 163
MS.gene79461.t1 MTR_2g093810 51.948 154 69 3 14 164 14 165 3.04e-48 161
MS.gene79461.t1 MTR_3g088110 48.734 158 74 3 13 168 6 158 8.56e-47 156
MS.gene79461.t1 MTR_8g094580 45.614 171 87 3 9 177 2 168 2.67e-46 155
MS.gene79461.t1 MTR_5g012080 50.888 169 64 8 9 169 2 159 1.07e-45 155
MS.gene79461.t1 MTR_4g036030 45.856 181 81 6 9 183 2 171 1.63e-45 155
MS.gene79461.t1 MTR_2157s0010 46.835 158 77 3 14 164 8 165 1.48e-44 150
MS.gene79461.t1 MTR_4g101680 47.059 170 76 6 9 173 2 162 3.03e-44 152
MS.gene79461.t1 MTR_6g011860 37.229 231 129 6 9 226 10 237 2.67e-43 150
MS.gene79461.t1 MTR_3g096920 46.552 174 81 6 9 178 2 167 2.72e-43 147
MS.gene79461.t1 MTR_2g068880 37.705 244 117 9 6 229 13 241 3.65e-43 148
MS.gene79461.t1 MTR_8g467490 43.114 167 85 3 8 164 4 170 5.01e-43 149
MS.gene79461.t1 MTR_8g076110 43.636 165 78 5 14 173 6 160 1.79e-42 146
MS.gene79461.t1 MTR_2g079990 47.059 153 72 3 14 164 16 161 2.90e-42 147
MS.gene79461.t1 MTR_2g068920 38.710 217 107 5 16 221 23 224 3.98e-42 144
MS.gene79461.t1 MTR_8g059170 46.405 153 75 3 14 164 14 161 5.10e-42 145
MS.gene79461.t1 MTR_3g064580 50.323 155 67 4 14 164 6 154 1.03e-41 150
MS.gene79461.t1 MTR_3g109340 41.176 170 92 2 14 181 22 185 1.28e-41 145
MS.gene79461.t1 MTR_5g076850 44.444 180 82 5 14 183 6 177 1.93e-41 149
MS.gene79461.t1 MTR_5g090970 41.905 210 99 8 16 215 20 216 2.02e-41 143
MS.gene79461.t1 MTR_5g090970 42.105 209 99 8 16 215 20 215 2.29e-41 143
MS.gene79461.t1 MTR_5g021710 43.860 171 81 5 14 179 8 168 4.93e-41 143
MS.gene79461.t1 MTR_3g109340 40.588 170 92 2 14 181 22 184 6.09e-41 143
MS.gene79461.t1 MTR_4g035590 46.286 175 76 7 14 181 8 171 6.10e-41 143
MS.gene79461.t1 MTR_1g096430 45.161 155 71 3 14 163 7 152 6.90e-41 142
MS.gene79461.t1 MTR_3g435150 44.375 160 82 3 14 171 16 170 1.28e-40 141
MS.gene79461.t1 MTR_5g040420 44.805 154 80 2 16 164 16 169 1.31e-40 143
MS.gene79461.t1 MTR_2g062730 42.941 170 84 4 10 174 6 167 1.42e-40 142
MS.gene79461.t1 MTR_2g078700 42.593 162 88 2 12 171 21 179 1.46e-40 143
MS.gene79461.t1 MTR_4g108760 43.125 160 84 3 14 171 17 171 1.77e-40 142
MS.gene79461.t1 MTR_6g084430 43.791 153 75 3 14 164 5 148 1.85e-40 141
MS.gene79461.t1 MTR_8g024480 42.458 179 86 5 2 168 3 176 2.94e-40 143
MS.gene79461.t1 MTR_3g093040 45.223 157 71 4 14 164 108 255 9.88e-40 139
MS.gene79461.t1 MTR_6g477900 45.399 163 76 4 14 172 6 159 1.24e-39 137
MS.gene79461.t1 MTR_3g096140 42.604 169 80 5 16 175 9 169 1.58e-39 137
MS.gene79461.t1 MTR_1g008740 41.040 173 85 4 14 179 13 175 6.51e-39 137
MS.gene79461.t1 MTR_1g008740 41.040 173 85 4 14 179 27 189 7.45e-39 138
MS.gene79461.t1 MTR_3g093050 41.530 183 89 5 11 184 19 192 1.26e-38 141
MS.gene79461.t1 MTR_3g096140 42.604 169 80 5 16 175 9 169 1.47e-38 137
MS.gene79461.t1 MTR_3g093050 42.222 180 86 5 14 184 22 192 2.02e-38 140
MS.gene79461.t1 MTR_4g134460 46.250 160 74 5 16 173 56 205 2.09e-38 138
MS.gene79461.t1 MTR_5g014300 43.293 164 76 4 10 164 2 157 2.64e-38 135
MS.gene79461.t1 MTR_5g069030 46.875 160 70 4 11 164 22 172 2.69e-38 140
MS.gene79461.t1 MTR_6g012670 40.994 161 88 3 13 171 19 174 3.02e-38 135
MS.gene79461.t1 MTR_2g064090 49.618 131 60 2 14 140 6 134 3.35e-38 135
MS.gene79461.t1 MTR_2g079990 40.341 176 78 3 14 164 16 189 3.48e-38 136
MS.gene79461.t1 MTR_3g096920 48.299 147 67 4 9 151 2 143 3.71e-38 135
MS.gene79461.t1 MTR_4g098630 40.284 211 102 6 12 214 4 198 1.00e-37 134
MS.gene79461.t1 MTR_7g085260 43.226 155 81 3 14 164 17 168 1.27e-37 135
MS.gene79461.t1 MTR_3g070030 43.030 165 86 4 7 168 12 171 1.37e-37 134
MS.gene79461.t1 MTR_1g069805 40.625 160 84 3 7 164 3 153 8.32e-37 130
MS.gene79461.t1 MTR_8g023840 42.949 156 73 4 14 164 11 155 2.04e-36 132
MS.gene79461.t1 MTR_6g032770 38.095 168 97 3 14 179 18 180 5.55e-36 130
MS.gene79461.t1 MTR_8g093580 39.655 174 90 4 10 175 2 168 1.15e-35 132
MS.gene79461.t1 MTR_3g116070 45.736 129 67 2 14 139 23 151 1.48e-35 129
MS.gene79461.t1 MTR_4g075980 49.606 127 61 2 16 139 17 143 2.03e-35 127
MS.gene79461.t1 MTR_7g097090 41.935 155 79 3 12 164 8 153 2.04e-35 127
MS.gene79461.t1 MTR_8g063550 39.080 174 91 4 10 175 2 168 2.60e-35 128
MS.gene79461.t1 MTR_8g063550 39.080 174 91 4 10 175 2 168 6.14e-35 129
MS.gene79461.t1 MTR_8g023860 42.138 159 76 4 11 164 9 156 6.51e-35 129
MS.gene79461.t1 MTR_8g063550 39.080 174 91 4 10 175 2 168 9.69e-35 128
MS.gene79461.t1 MTR_1g090720 45.513 156 78 3 14 164 42 195 2.44e-34 128
MS.gene79461.t1 MTR_2g086880 45.038 131 67 2 10 137 14 142 4.91e-34 127
MS.gene79461.t1 MTR_2g086880 45.038 131 67 2 10 137 14 142 6.03e-34 128
MS.gene79461.t1 MTR_2g064470 38.125 160 89 4 12 169 9 160 1.05e-33 123
MS.gene79461.t1 MTR_7g011130 43.704 135 72 2 7 139 12 144 6.03e-33 122
MS.gene79461.t1 MTR_7g011120 37.427 171 99 3 7 171 1 169 8.11e-33 121
MS.gene79461.t1 MTR_1g097300 48.438 128 60 2 16 139 21 146 9.78e-33 124
MS.gene79461.t1 MTR_1g090723 39.157 166 86 5 16 175 10 166 1.81e-32 124
MS.gene79461.t1 MTR_1g090723 39.157 166 86 5 16 175 10 166 2.04e-32 124
MS.gene79461.t1 MTR_1g090723 39.157 166 87 5 16 175 10 167 3.87e-32 123
MS.gene79461.t1 MTR_3g070040 41.558 154 86 3 18 171 12 161 5.24e-32 119
MS.gene79461.t1 MTR_8g023930 40.606 165 82 4 14 173 24 177 6.73e-32 121
MS.gene79461.t1 MTR_4g052620 36.058 208 114 6 14 211 5 203 1.40e-31 116
MS.gene79461.t1 MTR_0036s0150 39.157 166 86 5 16 175 7 163 1.51e-31 121
MS.gene79461.t1 MTR_2g086690 33.945 218 127 5 15 224 5 213 2.09e-31 115
MS.gene79461.t1 MTR_3g096140 39.610 154 76 5 31 175 3 148 5.45e-30 114
MS.gene79461.t1 MTR_8g023900 39.752 161 76 5 14 164 188 337 8.81e-30 115
MS.gene79461.t1 MTR_8g023900 39.103 156 81 5 14 164 12 158 6.95e-28 110
MS.gene79461.t1 MTR_4g094302 37.821 156 88 4 14 167 11 159 8.93e-30 110
MS.gene79461.t1 MTR_4g094302 41.732 127 66 3 14 139 11 130 1.46e-29 108
MS.gene79461.t1 MTR_7g070140 62.821 78 29 0 62 139 14 91 3.53e-29 107
MS.gene79461.t1 MTR_7g105170 37.500 160 89 4 14 164 4 161 2.19e-28 108
MS.gene79461.t1 MTR_8g094580 44.248 113 59 2 65 177 6 114 4.34e-27 104
MS.gene79461.t1 MTR_8g093790 32.934 167 83 7 13 177 9 148 6.90e-23 92.0
MS.gene79461.t1 MTR_8g023880 33.721 172 80 6 12 164 5 161 1.26e-21 90.5
MS.gene79461.t1 MTR_3g096400 31.902 163 90 7 13 164 6 158 9.02e-18 79.0
MS.gene79461.t1 MTR_7g070150 37.255 102 51 3 105 205 3 92 1.66e-16 72.4
MS.gene79461.t1 MTR_7g083330 26.904 197 120 8 13 205 17 193 5.93e-15 71.2
MS.gene79461.t1 MTR_7g083370 28.148 135 89 4 7 137 3 133 7.03e-14 67.0
MS.gene79461.t1 MTR_7g116460 29.825 171 98 6 20 180 11 169 5.08e-13 65.9
MS.gene79461.t1 MTR_2g014680 32.000 150 79 8 9 139 48 193 9.27e-13 66.6
MS.gene79461.t1 MTR_8g069160 27.536 207 112 10 9 196 63 250 1.24e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79461.t1 AT5G13180 61.628 172 57 3 1 171 1 164 3.05e-71 218
MS.gene79461.t1 AT2G33480 58.480 171 62 4 1 170 1 163 1.10e-64 202
MS.gene79461.t1 AT2G33480 57.895 171 61 4 1 170 1 161 9.40e-64 199
MS.gene79461.t1 AT3G04070 46.512 172 85 3 8 172 4 175 2.50e-51 170
MS.gene79461.t1 AT1G69490 50.314 159 74 3 12 168 7 162 4.47e-50 164
MS.gene79461.t1 AT1G77450 41.202 233 117 8 6 226 1 225 2.01e-48 160
MS.gene79461.t1 AT3G15510 50.323 155 69 3 18 164 21 175 3.68e-48 162
MS.gene79461.t1 AT1G61110 50.595 168 71 5 7 164 9 174 4.39e-48 161
MS.gene79461.t1 AT3G04070 42.553 188 85 4 8 172 4 191 7.87e-48 161
MS.gene79461.t1 AT1G01720 39.827 231 113 7 13 221 6 232 6.05e-47 157
MS.gene79461.t1 AT4G17980 46.541 159 78 2 10 164 2 157 4.60e-46 154
MS.gene79461.t1 AT4G17980 46.541 159 78 2 10 164 2 157 8.99e-46 154
MS.gene79461.t1 AT5G46590 46.914 162 77 3 10 167 2 158 2.66e-45 153
MS.gene79461.t1 AT5G39610 46.250 160 79 3 14 171 20 174 1.96e-44 150
MS.gene79461.t1 AT5G46590 49.669 151 70 3 10 156 2 150 5.07e-44 149
MS.gene79461.t1 AT1G12260 42.857 182 84 6 9 180 2 173 6.48e-44 150
MS.gene79461.t1 AT1G33060 48.387 155 69 3 14 164 24 171 1.16e-43 155
MS.gene79461.t1 AT1G33060 48.387 155 69 3 14 164 24 171 1.24e-43 155
MS.gene79461.t1 AT1G12260 42.857 182 84 6 9 180 2 173 1.69e-43 151
MS.gene79461.t1 AT1G62700 44.199 181 85 5 9 183 2 172 2.56e-43 150
MS.gene79461.t1 AT1G62700 44.199 181 85 5 9 183 2 172 2.56e-43 150
MS.gene79461.t1 AT4G27410 45.625 160 77 4 14 171 14 165 4.74e-43 147
MS.gene79461.t1 AT1G52890 46.541 159 76 3 14 170 14 165 9.50e-43 147
MS.gene79461.t1 AT5G62380 44.253 174 83 5 11 179 4 168 1.03e-42 147
MS.gene79461.t1 AT5G62380 44.253 174 83 5 11 179 4 168 1.03e-42 147
MS.gene79461.t1 AT5G63790 37.946 224 121 6 14 229 50 263 1.04e-42 147
MS.gene79461.t1 AT5G63790 37.946 224 121 6 14 229 60 273 1.05e-42 147
MS.gene79461.t1 AT3G15500 46.541 159 76 3 14 170 14 165 1.39e-42 146
MS.gene79461.t1 AT3G10490 46.154 156 72 4 14 164 27 175 1.55e-42 144
MS.gene79461.t1 AT1G65910 42.929 198 93 5 14 207 6 187 1.93e-42 152
MS.gene79461.t1 AT3G10480 46.452 155 72 3 14 164 27 174 6.26e-42 148
MS.gene79461.t1 AT1G71930 45.860 157 71 4 12 163 7 154 7.15e-42 145
MS.gene79461.t1 AT1G71930 45.860 157 71 4 12 163 7 154 7.15e-42 145
MS.gene79461.t1 AT5G39820 42.515 167 78 3 16 164 22 188 8.08e-42 145
MS.gene79461.t1 AT1G32770 42.222 180 84 4 3 168 5 178 8.25e-42 145
MS.gene79461.t1 AT2G18060 43.860 171 81 5 14 179 9 169 8.51e-42 145
MS.gene79461.t1 AT2G18060 43.860 171 81 5 14 179 9 169 8.51e-42 145
MS.gene79461.t1 AT5G08790 44.172 163 86 2 14 174 7 166 1.33e-41 143
MS.gene79461.t1 AT5G61430 43.750 160 83 3 14 171 16 170 2.36e-41 144
MS.gene79461.t1 AT3G03200 39.640 222 112 7 14 231 6 209 2.48e-41 147
MS.gene79461.t1 AT5G07680 43.750 160 83 3 14 171 3 157 2.55e-41 143
MS.gene79461.t1 AT5G07680 43.750 160 83 3 14 171 17 171 2.64e-41 144
MS.gene79461.t1 AT1G76420 45.098 153 76 2 14 164 22 168 3.11e-41 143
MS.gene79461.t1 AT4G10350 45.000 160 76 3 14 168 9 161 8.95e-41 142
MS.gene79461.t1 AT3G10490 46.154 156 72 4 14 164 27 175 9.14e-41 145
MS.gene79461.t1 AT4G36160 44.375 160 75 4 14 168 10 160 1.05e-40 143
MS.gene79461.t1 AT4G36160 44.375 160 75 4 14 168 10 160 1.05e-40 143
MS.gene79461.t1 AT4G36160 44.375 160 75 4 14 168 14 164 1.16e-40 143
MS.gene79461.t1 AT1G52880 48.077 156 70 4 18 164 21 174 1.17e-40 142
MS.gene79461.t1 AT1G26870 43.949 157 82 2 14 164 16 172 1.22e-40 144
MS.gene79461.t1 AT1G79580 45.181 166 73 4 10 168 13 167 1.27e-40 143
MS.gene79461.t1 AT1G79580 45.181 166 73 4 10 168 13 167 1.27e-40 143
MS.gene79461.t1 AT1G79580 45.181 166 73 4 10 168 13 167 1.27e-40 143
MS.gene79461.t1 AT1G79580 45.181 166 73 4 10 168 13 167 1.27e-40 143
MS.gene79461.t1 AT1G79580 45.181 166 73 4 10 168 13 167 1.27e-40 143
MS.gene79461.t1 AT3G04060 44.586 157 79 4 11 164 17 168 1.30e-40 142
MS.gene79461.t1 AT3G10480 46.154 156 72 4 14 164 27 175 1.72e-40 144
MS.gene79461.t1 AT1G32510 46.667 165 75 3 12 167 4 164 1.85e-40 140
MS.gene79461.t1 AT4G35580 46.497 157 69 4 14 164 9 156 1.99e-40 145
MS.gene79461.t1 AT4G35580 46.497 157 69 4 14 164 9 156 1.99e-40 145
MS.gene79461.t1 AT4G35580 46.497 157 69 4 14 164 9 156 2.18e-40 145
MS.gene79461.t1 AT2G24430 42.945 163 85 2 14 174 16 172 2.67e-40 140
MS.gene79461.t1 AT2G24430 42.945 163 85 2 14 174 16 172 2.67e-40 140
MS.gene79461.t1 AT5G17260 45.349 172 82 5 14 181 6 169 3.38e-40 144
MS.gene79461.t1 AT5G66300 44.848 165 75 6 14 172 12 166 3.85e-40 139
MS.gene79461.t1 AT4G27410 41.808 177 76 5 14 171 14 182 5.31e-40 140
MS.gene79461.t1 AT3G29035 46.528 144 73 2 14 155 24 165 6.20e-40 140
MS.gene79461.t1 AT3G61910 40.223 179 82 4 4 164 1 172 9.51e-40 139
MS.gene79461.t1 AT2G02450 46.250 160 74 5 16 173 53 202 1.50e-39 140
MS.gene79461.t1 AT2G02450 46.250 160 74 5 16 173 53 202 1.66e-39 140
MS.gene79461.t1 AT3G15170 40.373 161 85 3 12 167 18 172 1.68e-39 138
MS.gene79461.t1 AT3G18400 43.137 153 77 3 14 164 5 149 1.77e-39 138
MS.gene79461.t1 AT2G43000 39.423 208 103 6 16 218 20 209 1.84e-39 137
MS.gene79461.t1 AT2G46770 41.954 174 84 5 9 168 11 181 2.14e-39 139
MS.gene79461.t1 AT3G17730 44.172 163 78 4 14 172 6 159 2.66e-39 136
MS.gene79461.t1 AT5G53950 43.590 156 77 3 14 164 17 166 3.36e-39 139
MS.gene79461.t1 AT1G33280 43.750 176 81 5 14 181 8 173 4.74e-39 137
MS.gene79461.t1 AT3G12977 37.559 213 109 6 14 213 18 219 5.48e-39 136
MS.gene79461.t1 AT5G18270 44.156 154 78 4 14 164 21 169 2.74e-38 136
MS.gene79461.t1 AT5G18270 44.156 154 78 4 14 164 21 169 2.95e-38 135
MS.gene79461.t1 AT2G17040 50.394 127 60 2 16 139 8 134 3.23e-38 134
MS.gene79461.t1 AT3G10500 41.379 174 87 4 8 175 3 167 6.40e-38 139
MS.gene79461.t1 AT1G54330 40.719 167 80 4 14 171 6 162 1.90e-36 130
MS.gene79461.t1 AT5G24590 44.304 158 78 4 11 164 10 161 3.78e-36 132
MS.gene79461.t1 AT3G12910 41.765 170 88 4 16 174 23 192 4.08e-36 129
MS.gene79461.t1 AT1G56010 40.120 167 87 5 12 172 17 176 9.52e-36 129
MS.gene79461.t1 AT5G04410 38.418 177 94 4 8 176 3 172 2.99e-35 131
MS.gene79461.t1 AT3G10480 38.624 189 71 5 14 164 27 208 4.25e-35 130
MS.gene79461.t1 AT5G09330 42.938 177 82 6 10 176 2 169 5.35e-35 130
MS.gene79461.t1 AT5G09330 42.938 177 82 6 10 176 2 169 5.35e-35 130
MS.gene79461.t1 AT5G09330 42.938 177 82 6 10 176 2 169 5.35e-35 130
MS.gene79461.t1 AT5G09330 42.938 177 82 6 10 176 2 169 5.35e-35 130
MS.gene79461.t1 AT5G09330 42.938 177 82 6 10 176 2 169 5.35e-35 130
MS.gene79461.t1 AT3G49530 46.512 129 64 2 14 138 13 140 1.44e-34 127
MS.gene79461.t1 AT5G04395 44.366 142 63 2 14 139 28 169 2.84e-34 121
MS.gene79461.t1 AT3G49530 46.512 129 64 2 14 138 13 140 3.49e-34 127
MS.gene79461.t1 AT3G44290 36.702 188 97 5 7 191 7 175 1.23e-33 121
MS.gene79461.t1 AT1G34180 50.781 128 57 2 16 139 18 143 1.33e-33 125
MS.gene79461.t1 AT5G64060 39.205 176 90 5 10 176 2 169 1.43e-33 124
MS.gene79461.t1 AT1G34180 50.781 128 57 2 16 139 18 143 3.25e-33 126
MS.gene79461.t1 AT3G44290 36.702 188 97 5 7 191 7 175 7.50e-33 121
MS.gene79461.t1 AT1G34190 48.438 128 60 2 16 139 18 143 2.23e-32 123
MS.gene79461.t1 AT5G22290 35.567 194 104 5 16 205 23 199 2.37e-32 120
MS.gene79461.t1 AT2G27300 37.158 183 94 4 1 180 1 165 4.70e-32 119
MS.gene79461.t1 AT2G33480 51.786 112 46 3 59 170 3 106 6.11e-32 116
MS.gene79461.t1 AT4G28530 38.674 181 84 5 7 169 3 174 7.05e-32 119
MS.gene79461.t1 AT1G34180 46.429 140 57 2 16 139 18 155 7.45e-32 121
MS.gene79461.t1 AT1G34180 46.429 140 57 2 16 139 18 155 1.61e-31 121
MS.gene79461.t1 AT5G50820 37.500 168 95 6 5 168 7 168 2.47e-29 108
MS.gene79461.t1 AT4G01520 43.939 132 67 4 15 139 5 136 1.04e-27 107
MS.gene79461.t1 AT4G01550 36.041 197 104 7 17 207 7 187 1.84e-27 109
MS.gene79461.t1 AT5G14000 34.940 166 96 3 7 170 8 163 5.57e-27 103
MS.gene79461.t1 AT5G64530 36.025 161 82 4 14 164 3 152 2.00e-26 101
MS.gene79461.t1 AT5G64530 41.732 127 62 3 14 139 3 118 2.06e-26 100
MS.gene79461.t1 AT5G14000 38.519 135 79 2 7 139 8 140 3.70e-26 99.8
MS.gene79461.t1 AT4G01540 43.077 130 67 4 17 139 7 136 4.84e-26 104
MS.gene79461.t1 AT4G01540 43.077 130 67 4 17 139 7 136 5.22e-26 104
MS.gene79461.t1 AT1G32870 47.826 138 60 5 7 139 5 135 5.28e-26 105
MS.gene79461.t1 AT1G32870 47.826 138 60 5 7 139 5 135 5.47e-26 105
MS.gene79461.t1 AT5G22380 33.636 220 121 7 17 221 8 217 6.31e-26 101
MS.gene79461.t1 AT1G32870 47.826 138 60 5 7 139 41 171 7.44e-26 105
MS.gene79461.t1 AT4G01540 43.077 130 67 4 17 139 7 136 1.18e-25 104
MS.gene79461.t1 AT4G01540 43.077 130 67 4 17 139 7 136 1.33e-25 103
MS.gene79461.t1 AT3G12977 37.179 156 82 4 66 213 19 166 2.32e-24 97.1
MS.gene79461.t1 AT1G02230 33.721 172 94 6 15 179 4 162 1.08e-23 97.8
MS.gene79461.t1 AT4G10350 43.519 108 54 2 61 168 14 114 1.35e-23 96.3
MS.gene79461.t1 AT3G44350 30.396 227 133 7 17 229 8 223 1.45e-23 95.1
MS.gene79461.t1 AT1G02250 34.946 186 89 7 15 184 4 173 2.81e-23 96.7
MS.gene79461.t1 AT5G61430 42.056 107 57 2 65 171 6 107 4.87e-23 94.4
MS.gene79461.t1 AT3G44350 39.286 140 75 4 17 149 8 144 5.86e-23 91.7
MS.gene79461.t1 AT1G56010 40.187 107 60 2 66 172 7 109 5.11e-22 91.3
MS.gene79461.t1 AT3G04420 38.760 129 71 3 15 137 4 130 1.36e-21 90.9
MS.gene79461.t1 AT3G04420 38.931 131 68 4 15 137 4 130 1.96e-21 91.3
MS.gene79461.t1 AT1G01010 38.346 133 68 4 17 137 6 136 2.01e-20 89.4
MS.gene79461.t1 AT2G43000 37.931 145 69 5 77 218 5 131 4.56e-19 82.4
MS.gene79461.t1 AT3G10490 46.341 82 36 3 84 164 1 75 5.43e-19 84.7
MS.gene79461.t1 AT3G10490 46.341 82 36 3 84 164 1 75 5.43e-19 84.7
MS.gene79461.t1 AT1G02220 38.931 131 65 5 15 137 4 127 4.90e-18 82.4
MS.gene79461.t1 AT2G18060 45.556 90 39 4 90 179 2 81 8.91e-18 80.5
MS.gene79461.t1 AT3G56530 30.675 163 89 6 14 166 52 200 2.42e-16 77.0
MS.gene79461.t1 AT3G04430 33.333 177 95 7 20 175 6 180 1.44e-15 72.8
MS.gene79461.t1 AT4G28530 29.762 168 100 3 7 156 3 170 6.02e-15 72.8
MS.gene79461.t1 AT5G22290 35.345 116 57 4 91 205 2 100 3.01e-13 67.4
MS.gene79461.t1 AT1G28470 31.875 160 87 9 2 143 66 221 8.14e-13 67.0
MS.gene79461.t1 AT3G55210 24.855 173 103 4 14 170 11 172 5.66e-12 64.3

Find 48 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAACATTAATCTCGAATT+AGG 0.265228 4.1:-6473348 None:intergenic
AGAGACTTCAATGTTGTTAC+TGG 0.276749 4.1:-6473427 None:intergenic
AAAAGAAGTGGTATAGAATA+TGG 0.284193 4.1:+6473300 MS.gene79461:CDS
ATTTCTATACTTTGCTTCCT+TGG 0.288379 4.1:-6472791 None:intergenic
AATCAGTTCTAGACCCATTT+GGG 0.329258 4.1:-6472945 None:intergenic
GAACAACAAAATGTGGATAT+TGG 0.340464 4.1:+6472830 MS.gene79461:CDS
TTTCTGGGTTGGCAGAACTA+TGG 0.346505 4.1:+6473234 MS.gene79461:intron
TCAACTTGTAATGGCATTGT+AGG 0.349375 4.1:+6472886 MS.gene79461:CDS
CAATCAGTTCTAGACCCATT+TGG 0.376037 4.1:-6472946 None:intergenic
ATTTCATCTTCAACTTGTAA+TGG 0.394997 4.1:+6472877 MS.gene79461:CDS
TGTGGATATTGGAAGGCAAC+AGG 0.396475 4.1:+6472841 MS.gene79461:CDS
CAGAACTATGGAAATGAGAT+AGG 0.425461 4.1:+6473246 MS.gene79461:intron
TGTTTGCAAGTATGATCCTT+GGG 0.435717 4.1:+6472281 MS.gene79461:CDS
CAAAGTATAGAAATAGTAAT+CGG 0.458697 4.1:+6472800 MS.gene79461:CDS
TTCTGTGTCGGTTATCTGTA+AGG 0.460976 4.1:+6473277 MS.gene79461:CDS
AACATTGACCTCAGGAATGA+TGG 0.468324 4.1:-6472262 None:intergenic
AACACAAGCTCTTCATCTGT+TGG 0.471066 4.1:-6472195 None:intergenic
CAAGCTCTTCATCTGTTGGT+TGG 0.493179 4.1:-6472191 None:intergenic
TATGAAGGGAAATCCCCAAA+TGG 0.497265 4.1:+6472931 MS.gene79461:CDS
TGGAAATGAGATAGGAGAAT+GGG 0.504294 4.1:+6473254 MS.gene79461:CDS
TATGATCCTTGGGATTTGCC+AGG 0.504380 4.1:+6472291 MS.gene79461:CDS
ATGTTTGCAAGTATGATCCT+TGG 0.507170 4.1:+6472280 MS.gene79461:CDS
AGGAATGATGGAAGCAGGCA+AGG 0.516507 4.1:-6472250 None:intergenic
ACCTCAGGAATGATGGAAGC+AGG 0.516623 4.1:-6472255 None:intergenic
ATGAAGGGAAATCCCCAAAT+GGG 0.516990 4.1:+6472932 MS.gene79461:CDS
AACAAAATGTGGATATTGGA+AGG 0.533417 4.1:+6472834 MS.gene79461:CDS
GCCTGCTTCCATCATTCCTG+AGG 0.534650 4.1:+6472254 MS.gene79461:CDS
CAACTTGTAATGGCATTGTA+GGG 0.535602 4.1:+6472887 MS.gene79461:CDS
ATGGAAATGAGATAGGAGAA+TGG 0.536346 4.1:+6473253 MS.gene79461:CDS
TACTTGCAAACATTGACCTC+AGG 0.544904 4.1:-6472270 None:intergenic
GGAATGATGGAAGCAGGCAA+GGG 0.549247 4.1:-6472249 None:intergenic
CAAATGGGTCTAGAACTGAT+TGG 0.560786 4.1:+6472947 MS.gene79461:CDS
ATGAGTAGAACAACAAAATG+TGG 0.563550 4.1:+6472823 MS.gene79461:CDS
AACATTAATCTCGAATTAGG+AGG 0.573486 4.1:-6473345 None:intergenic
TACTGACCTGGCAAATCCCA+AGG 0.595838 4.1:-6472297 None:intergenic
TAGGAGAATGGGTTCTGTGT+CGG 0.601018 4.1:+6473265 MS.gene79461:CDS
TAGTAGTTTCCACATTGATG+AGG 0.604094 4.1:-6472987 None:intergenic
GGAGTGAGTAGATTGCCTCC+TGG 0.605400 4.1:+6472159 MS.gene79461:CDS
GTGGATATTGGAAGGCAACA+GGG 0.617430 4.1:+6472842 MS.gene79461:CDS
ATCAGTTCTAGACCCATTTG+GGG 0.628898 4.1:-6472944 None:intergenic
GTTGGTTGGAAACGAAAACC+AGG 0.630000 4.1:-6472177 None:intergenic
GAATGATGGAAGCAGGCAAG+GGG 0.638798 4.1:-6472248 None:intergenic
TGAATATCGCCTCATCAATG+TGG 0.647802 4.1:+6472978 MS.gene79461:CDS
ACTGGAACTTGAGCATGAAG+AGG 0.652135 4.1:-6473409 None:intergenic
AACTACTAACAACTCAACCC+AGG 0.658665 4.1:+6473002 MS.gene79461:CDS
TTATCTGTAAGGAAAAGAAG+TGG 0.666564 4.1:+6473288 MS.gene79461:CDS
GAGGTTGTGATGAACAAGAG+AGG 0.686120 4.1:+6472755 MS.gene79461:CDS
GGTTGGAAACGAAAACCAGG+AGG 0.757632 4.1:-6472174 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTATTTAGTGTAAAAA+AGG - chr4.1:6472563-6472582 None:intergenic 10.0%
!!! AATATAATTTAACTTTTTCT+GGG + chr4.1:6473219-6473238 MS.gene79461:intron 10.0%
!!! CTTTTCTAAAAAAATTTTTA+TGG + chr4.1:6472428-6472447 MS.gene79461:intron 10.0%
!!! TAATATAATTTAACTTTTTC+TGG + chr4.1:6473218-6473237 MS.gene79461:intron 10.0%
!!! AAGCTGAATTTTATTAAAAA+TGG + chr4.1:6472138-6472157 MS.gene79461:CDS 15.0%
!!! ATTAATGTTTGATTTTATGA+TGG + chr4.1:6473359-6473378 MS.gene79461:CDS 15.0%
!!! TAAATCTTATTAACTAGTTT+TGG + chr4.1:6472633-6472652 MS.gene79461:intron 15.0%
!! CAAAGTATAGAAATAGTAAT+CGG + chr4.1:6472800-6472819 MS.gene79461:CDS 20.0%
!! GAAATTATAACTTTAAGCAA+CGG + chr4.1:6473052-6473071 MS.gene79461:intron 20.0%
!! TAGCCATTAACAAATAATAA+AGG + chr4.1:6472683-6472702 MS.gene79461:intron 20.0%
!! TTGTAAAAAAAATTCAACGT+TGG + chr4.1:6472398-6472417 MS.gene79461:intron 20.0%
!!! TCTCCTTTATTATTTGTTAA+TGG - chr4.1:6472689-6472708 None:intergenic 20.0%
!!! TTAACATTGTTTTGTTTGAT+TGG + chr4.1:6472723-6472742 MS.gene79461:intron 20.0%
! AAAAGAAGTGGTATAGAATA+TGG + chr4.1:6473300-6473319 MS.gene79461:CDS 25.0%
! ATTTCATCTTCAACTTGTAA+TGG + chr4.1:6472877-6472896 MS.gene79461:CDS 25.0%
! GACAATGTATAATATATGCA+AGG - chr4.1:6472476-6472495 None:intergenic 25.0%
! TCAAACATTAATCTCGAATT+AGG - chr4.1:6473351-6473370 None:intergenic 25.0%
! TTTGTTTGATTGGTATGTAT+AGG + chr4.1:6472733-6472752 MS.gene79461:intron 25.0%
!! AAAAAATTTTTATGGTAGCC+AGG + chr4.1:6472436-6472455 MS.gene79461:intron 25.0%
!!! AAAACTTTGGTTTTCTATGA+AGG + chr4.1:6472916-6472935 MS.gene79461:CDS 25.0%
!!! AAACTTTGGTTTTCTATGAA+GGG + chr4.1:6472917-6472936 MS.gene79461:CDS 25.0%
!!! TAATTTAACTTTTTCTGGGT+TGG + chr4.1:6473223-6473242 MS.gene79461:intron 25.0%
AAATGCGTAAGTAATTACCT+GGG - chr4.1:6473022-6473041 None:intergenic 30.0%
AACAAAATGTGGATATTGGA+AGG + chr4.1:6472834-6472853 MS.gene79461:CDS 30.0%
AACATTAATCTCGAATTAGG+AGG - chr4.1:6473348-6473367 None:intergenic 30.0%
ATGAGTAGAACAACAAAATG+TGG + chr4.1:6472823-6472842 MS.gene79461:CDS 30.0%
ATTTCTATACTTTGCTTCCT+TGG - chr4.1:6472794-6472813 None:intergenic 30.0%
GAACAACAAAATGTGGATAT+TGG + chr4.1:6472830-6472849 MS.gene79461:CDS 30.0%
TGTATAATATATGCAAGGTC+TGG - chr4.1:6472471-6472490 None:intergenic 30.0%
TTATCTGTAAGGAAAAGAAG+TGG + chr4.1:6473288-6473307 MS.gene79461:CDS 30.0%
TTGTGAAAATGAGTTAGACT+CGG - chr4.1:6472347-6472366 None:intergenic 30.0%
! CTCATTTTCACAAAACTGAT+TGG + chr4.1:6472354-6472373 MS.gene79461:intron 30.0%
!! TTTGTTATTAGTTACTGACC+TGG - chr4.1:6472312-6472331 None:intergenic 30.0%
AGAGACTTCAATGTTGTTAC+TGG - chr4.1:6473430-6473449 None:intergenic 35.0%
ATGGAAATGAGATAGGAGAA+TGG + chr4.1:6473253-6473272 MS.gene79461:CDS 35.0%
ATGTTTGCAAGTATGATCCT+TGG + chr4.1:6472280-6472299 MS.gene79461:CDS 35.0%
CAAATGCGTAAGTAATTACC+TGG - chr4.1:6473023-6473042 None:intergenic 35.0%
CAACTTGTAATGGCATTGTA+GGG + chr4.1:6472887-6472906 MS.gene79461:CDS 35.0%
CAGAACTATGGAAATGAGAT+AGG + chr4.1:6473246-6473265 MS.gene79461:intron 35.0%
GTTTGATTGGTATGTATAGG+AGG + chr4.1:6472736-6472755 MS.gene79461:intron 35.0%
TAGTAGTTTCCACATTGATG+AGG - chr4.1:6472990-6473009 None:intergenic 35.0%
TCAACTTGTAATGGCATTGT+AGG + chr4.1:6472886-6472905 MS.gene79461:CDS 35.0%
TGGAAATGAGATAGGAGAAT+GGG + chr4.1:6473254-6473273 MS.gene79461:CDS 35.0%
TGTAGGGCTAAGAAAAACTT+TGG + chr4.1:6472903-6472922 MS.gene79461:CDS 35.0%
TGTGAAAATGAGTTAGACTC+GGG - chr4.1:6472346-6472365 None:intergenic 35.0%
TGTTTGCAAGTATGATCCTT+GGG + chr4.1:6472281-6472300 MS.gene79461:CDS 35.0%
!! AATCAGTTCTAGACCCATTT+GGG - chr4.1:6472948-6472967 None:intergenic 35.0%
AACACAAGCTCTTCATCTGT+TGG - chr4.1:6472198-6472217 None:intergenic 40.0%
AACATTGACCTCAGGAATGA+TGG - chr4.1:6472265-6472284 None:intergenic 40.0%
AACTACTAACAACTCAACCC+AGG + chr4.1:6473002-6473021 MS.gene79461:CDS 40.0%
ATGAAGGGAAATCCCCAAAT+GGG + chr4.1:6472932-6472951 MS.gene79461:CDS 40.0%
TACTTGCAAACATTGACCTC+AGG - chr4.1:6472273-6472292 None:intergenic 40.0%
TATGAAGGGAAATCCCCAAA+TGG + chr4.1:6472931-6472950 MS.gene79461:CDS 40.0%
TGAATATCGCCTCATCAATG+TGG + chr4.1:6472978-6472997 MS.gene79461:CDS 40.0%
! AAGGTCTGGAATTCAAATCC+TGG - chr4.1:6472457-6472476 None:intergenic 40.0%
! CAAATGGGTCTAGAACTGAT+TGG + chr4.1:6472947-6472966 MS.gene79461:CDS 40.0%
! TGAGCTTAGATCAGTTGGTA+GGG - chr4.1:6472498-6472517 None:intergenic 40.0%
!! ATCAGTTCTAGACCCATTTG+GGG - chr4.1:6472947-6472966 None:intergenic 40.0%
!! CAATCAGTTCTAGACCCATT+TGG - chr4.1:6472949-6472968 None:intergenic 40.0%
!! TTCTGTGTCGGTTATCTGTA+AGG + chr4.1:6473277-6473296 MS.gene79461:CDS 40.0%
ACTGGAACTTGAGCATGAAG+AGG - chr4.1:6473412-6473431 None:intergenic 45.0%
CAAGCTCTTCATCTGTTGGT+TGG - chr4.1:6472194-6472213 None:intergenic 45.0%
GAGGTTGTGATGAACAAGAG+AGG + chr4.1:6472755-6472774 MS.gene79461:CDS 45.0%
GTGAGCTTAGATCAGTTGGT+AGG - chr4.1:6472499-6472518 None:intergenic 45.0%
GTGGATATTGGAAGGCAACA+GGG + chr4.1:6472842-6472861 MS.gene79461:CDS 45.0%
GTTGGTTGGAAACGAAAACC+AGG - chr4.1:6472180-6472199 None:intergenic 45.0%
TATGATCCTTGGGATTTGCC+AGG + chr4.1:6472291-6472310 MS.gene79461:CDS 45.0%
TGTGGATATTGGAAGGCAAC+AGG + chr4.1:6472841-6472860 MS.gene79461:CDS 45.0%
! TAGGAGAATGGGTTCTGTGT+CGG + chr4.1:6473265-6473284 MS.gene79461:CDS 45.0%
!! TTTCTGGGTTGGCAGAACTA+TGG + chr4.1:6473234-6473253 MS.gene79461:intron 45.0%
CCAACTGATCTAAGCTCACG+AGG + chr4.1:6472500-6472519 MS.gene79461:intron 50.0%
CCTCGTGAGCTTAGATCAGT+TGG - chr4.1:6472503-6472522 None:intergenic 50.0%
GGTTGGAAACGAAAACCAGG+AGG - chr4.1:6472177-6472196 None:intergenic 50.0%
TACTGACCTGGCAAATCCCA+AGG - chr4.1:6472300-6472319 None:intergenic 50.0%
! ACCTCAGGAATGATGGAAGC+AGG - chr4.1:6472258-6472277 None:intergenic 50.0%
! AGGAATGATGGAAGCAGGCA+AGG - chr4.1:6472253-6472272 None:intergenic 50.0%
! GAATGATGGAAGCAGGCAAG+GGG - chr4.1:6472251-6472270 None:intergenic 50.0%
! GGAATGATGGAAGCAGGCAA+GGG - chr4.1:6472252-6472271 None:intergenic 50.0%
!!! GAGGCACTTTTTCAGCTCCA+AGG + chr4.1:6472774-6472793 MS.gene79461:CDS 50.0%
GCCTGCTTCCATCATTCCTG+AGG + chr4.1:6472254-6472273 MS.gene79461:CDS 55.0%
GGAGTGAGTAGATTGCCTCC+TGG + chr4.1:6472159-6472178 MS.gene79461:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 6472132 6473494 6472132 ID=MS.gene79461
chr4.1 mRNA 6472132 6473494 6472132 ID=MS.gene79461.t1;Parent=MS.gene79461
chr4.1 exon 6472132 6472312 6472132 ID=MS.gene79461.t1.exon1;Parent=MS.gene79461.t1
chr4.1 CDS 6472132 6472312 6472132 ID=cds.MS.gene79461.t1;Parent=MS.gene79461.t1
chr4.1 exon 6472755 6473023 6472755 ID=MS.gene79461.t1.exon2;Parent=MS.gene79461.t1
chr4.1 CDS 6472755 6473023 6472755 ID=cds.MS.gene79461.t1;Parent=MS.gene79461.t1
chr4.1 exon 6473249 6473494 6473249 ID=MS.gene79461.t1.exon3;Parent=MS.gene79461.t1
chr4.1 CDS 6473249 6473494 6473249 ID=cds.MS.gene79461.t1;Parent=MS.gene79461.t1
Gene Sequence

>MS.gene79461

ATGGATAAGCTGAATTTTATTAAAAATGGAGTGAGTAGATTGCCTCCTGGTTTTCGTTTCCAACCAACAGATGAAGAGCTTGTGTTTAATTATTTAAAATGTAAAATCTTCTCATGCCCCTTGCCTGCTTCCATCATTCCTGAGGTCAATGTTTGCAAGTATGATCCTTGGGATTTGCCAGGTCAGTAACTAATAACAAATTAATACTACACCCGAGTCTAACTCATTTTCACAAAACTGATTGGTAAGATGAAAAGTGTTACAATTTGTAAAAAAAATTCAACGTTGGAGTTGAACTTTTCTAAAAAAATTTTTATGGTAGCCAGGATTTGAATTCCAGACCTTGCATATATTATACATTGTCCCTACCAACTGATCTAAGCTCACGAGGACGAACTTTTTCTAATATATACACATAACATATTGTTCCTTTTTTACACTAAATAATTATATAAAATAAAAGAATCATGCATATATTCGTAATGTACAAAATTACTAACTTAAATCTTATTAACTAGTTTTGGTTGTCATTGTAATAATGCTATATATGATAGCCATTAACAAATAATAAAGGAGAAAAATATTAAGTGATTAACATTGTTTTGTTTGATTGGTATGTATAGGAGGTTGTGATGAACAAGAGAGGCACTTTTTCAGCTCCAAGGAAGCAAAGTATAGAAATAGTAATCGGATGAGTAGAACAACAAAATGTGGATATTGGAAGGCAACAGGGTCAGACAAAAAAATTTCATCTTCAACTTGTAATGGCATTGTAGGGCTAAGAAAAACTTTGGTTTTCTATGAAGGGAAATCCCCAAATGGGTCTAGAACTGATTGGATCTTGCATGAATATCGCCTCATCAATGTGGAAACTACTAACAACTCAACCCAGGTAATTACTTACGCATTTGTAAGAGTTTGAAATTATAACTTTAAGCAACGGAATTCAAATTATTTCAGAAATAGTTGTAAAATAGTCGTTTTAATCAATAATAATTTTTCTCTTTCTCGATATTTTTATAAAAAAAAATTATATATGTATGTATGTGAAAATAGATCATTATTGAAATTGCAAATATATTTATTTAATATAATTTAACTTTTTCTGGGTTGGCAGAACTATGGAAATGAGATAGGAGAATGGGTTCTGTGTCGGTTATCTGTAAGGAAAAGAAGTGGTATAGAATATGGAAGTACTAGCACTCATAATGCTCCTCCTAATTCGAGATTAATGTTTGATTTTATGATGGTAAACAACAATACATGTTCTTCTACGTCCTCTTCATGCTCAAGTTCCAGTAACAACATTGAAGTCTCTTCAAATGTACAAGATCATGAACAAGACTATGCTGATCATTTTTAA
Protein sequence

>MS.gene79461.t1

MDKLNFIKNGVSRLPPGFRFQPTDEELVFNYLKCKIFSCPLPASIIPEVNVCKYDPWDLPGGCDEQERHFFSSKEAKYRNSNRMSRTTKCGYWKATGSDKKISSSTCNGIVGLRKTLVFYEGKSPNGSRTDWILHEYRLINVETTNNSTQNYGNEIGEWVLCRLSVRKRSGIEYGSTSTHNAPPNSRLMFDFMMVNNNTCSSTSSSCSSSSNNIEVSSNVQDHEQDYADHF