Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057101.t1 | XP_003617387.2 | 98.8 | 922 | 11 | 0 | 1 | 922 | 1 | 922 | 0.00E+00 | 1739.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057101.t1 | Q8H1U4 | 65.8 | 916 | 304 | 4 | 1 | 913 | 1 | 910 | 0.0e+00 | 1115.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057101.t1 | G7K3C1 | 98.8 | 922 | 11 | 0 | 1 | 922 | 1 | 922 | 0.0e+00 | 1739.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051914 | MS.gene057101 | 0.810568 | 1.08E-50 | -1.69E-46 |
| MS.gene054941 | MS.gene057101 | 0.817964 | 2.51E-52 | -1.69E-46 |
| MS.gene05640 | MS.gene057101 | 0.800334 | 1.51E-48 | -1.69E-46 |
| MS.gene05652 | MS.gene057101 | 0.817437 | 3.30E-52 | -1.69E-46 |
| MS.gene056618 | MS.gene057101 | 0.835238 | 1.88E-56 | -1.69E-46 |
| MS.gene057101 | MS.gene058128 | 0.854206 | 1.44E-61 | -1.69E-46 |
| MS.gene057101 | MS.gene058853 | 0.806425 | 8.28E-50 | -1.69E-46 |
| MS.gene057101 | MS.gene059905 | 0.802797 | 4.73E-49 | -1.69E-46 |
| MS.gene057101 | MS.gene06421 | 0.8182 | 2.22E-52 | -1.69E-46 |
| MS.gene057101 | MS.gene066026 | 0.818009 | 2.45E-52 | -1.69E-46 |
| MS.gene057101 | MS.gene070324 | 0.852866 | 3.48E-61 | -1.69E-46 |
| MS.gene057101 | MS.gene071422 | 0.825965 | 3.52E-54 | -1.69E-46 |
| MS.gene057101 | MS.gene072366 | 0.817733 | 2.83E-52 | -1.69E-46 |
| MS.gene057101 | MS.gene073059 | 0.816551 | 5.22E-52 | -1.69E-46 |
| MS.gene057101 | MS.gene073062 | 0.820056 | 8.39E-53 | -1.69E-46 |
| MS.gene057101 | MS.gene074201 | 0.826116 | 3.24E-54 | -1.69E-46 |
| MS.gene057101 | MS.gene074515 | 0.832804 | 7.67E-56 | -1.69E-46 |
| MS.gene057101 | MS.gene21734 | 0.838948 | 2.12E-57 | -1.69E-46 |
| MS.gene057101 | MS.gene21888 | 0.84983 | 2.51E-60 | -1.69E-46 |
| MS.gene057101 | MS.gene23050 | 0.823335 | 1.46E-53 | -1.69E-46 |
| MS.gene057101 | MS.gene27560 | 0.839329 | 1.69E-57 | -1.69E-46 |
| MS.gene057101 | MS.gene27771 | 0.83804 | 3.64E-57 | -1.69E-46 |
| MS.gene057101 | MS.gene28452 | 0.832719 | 8.05E-56 | -1.69E-46 |
| MS.gene057101 | MS.gene28923 | 0.801388 | 9.22E-49 | -1.69E-46 |
| MS.gene057101 | MS.gene29942 | 0.807259 | 5.52E-50 | -1.69E-46 |
| MS.gene057101 | MS.gene35853 | 0.800536 | 1.38E-48 | -1.69E-46 |
| MS.gene057101 | MS.gene39911 | 0.808051 | 3.74E-50 | -1.69E-46 |
| MS.gene057101 | MS.gene40630 | 0.819772 | 9.74E-53 | -1.69E-46 |
| MS.gene057101 | MS.gene41190 | 0.838841 | 2.26E-57 | -1.69E-46 |
| MS.gene057101 | MS.gene45445 | 0.818043 | 2.41E-52 | -1.69E-46 |
| MS.gene057101 | MS.gene47664 | 0.818248 | 2.16E-52 | -1.69E-46 |
| MS.gene057101 | MS.gene48038 | 0.871962 | 4.58E-67 | -1.69E-46 |
| MS.gene057101 | MS.gene49165 | 0.800063 | 1.72E-48 | -1.69E-46 |
| MS.gene057101 | MS.gene49349 | 0.816185 | 6.30E-52 | -1.69E-46 |
| MS.gene057101 | MS.gene50576 | 0.820787 | 5.70E-53 | -1.69E-46 |
| MS.gene057101 | MS.gene51554 | 0.826114 | 3.24E-54 | -1.69E-46 |
| MS.gene057101 | MS.gene52403 | 0.814983 | 1.17E-51 | -1.69E-46 |
| MS.gene057101 | MS.gene52980 | 0.815866 | 7.42E-52 | -1.69E-46 |
| MS.gene057101 | MS.gene58835 | 0.810746 | 9.89E-51 | -1.69E-46 |
| MS.gene057101 | MS.gene60269 | 0.800376 | 1.48E-48 | -1.69E-46 |
| MS.gene057101 | MS.gene61094 | 0.840138 | 1.04E-57 | -1.69E-46 |
| MS.gene057101 | MS.gene61684 | 0.838638 | 2.55E-57 | -1.69E-46 |
| MS.gene057101 | MS.gene63320 | 0.814432 | 1.55E-51 | -1.69E-46 |
| MS.gene057101 | MS.gene63469 | 0.801086 | 1.06E-48 | -1.69E-46 |
| MS.gene057101 | MS.gene66403 | 0.810978 | 8.81E-51 | -1.69E-46 |
| MS.gene057101 | MS.gene72164 | 0.828447 | 8.95E-55 | -1.69E-46 |
| MS.gene057101 | MS.gene75761 | 0.808058 | 3.73E-50 | -1.69E-46 |
| MS.gene057101 | MS.gene75915 | 0.809036 | 2.31E-50 | -1.69E-46 |
| MS.gene057101 | MS.gene75918 | 0.81968 | 1.02E-52 | -1.69E-46 |
| MS.gene057101 | MS.gene79461 | 0.806371 | 8.50E-50 | -1.69E-46 |
| MS.gene057101 | MS.gene80899 | 0.841556 | 4.42E-58 | -1.69E-46 |
| MS.gene057101 | MS.gene82422 | 0.806055 | 9.91E-50 | -1.69E-46 |
| MS.gene057101 | MS.gene82768 | 0.824586 | 7.45E-54 | -1.69E-46 |
| MS.gene057101 | MS.gene87884 | 0.809505 | 1.83E-50 | -1.69E-46 |
| MS.gene057101 | MS.gene92313 | 0.842516 | 2.47E-58 | -1.69E-46 |
| MS.gene057101 | MS.gene93762 | 0.818952 | 1.50E-52 | -1.69E-46 |
| MS.gene057101 | MS.gene94553 | 0.805917 | 1.06E-49 | -1.69E-46 |
| MS.gene057101 | MS.gene94954 | 0.815989 | 6.97E-52 | -1.69E-46 |
| MS.gene057101 | MS.gene96101 | 0.816417 | 5.59E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene059371 | MS.gene057101 | PPI |
| MS.gene26467 | MS.gene057101 | PPI |
| MS.gene29661 | MS.gene057101 | PPI |
| MS.gene33573 | MS.gene057101 | PPI |
| MS.gene94232 | MS.gene057101 | PPI |
| MS.gene006458 | MS.gene057101 | PPI |
| MS.gene059370 | MS.gene057101 | PPI |
| MS.gene43131 | MS.gene057101 | PPI |
| MS.gene006802 | MS.gene057101 | PPI |
| MS.gene76069 | MS.gene057101 | PPI |
| MS.gene007855 | MS.gene057101 | PPI |
| MS.gene051100 | MS.gene057101 | PPI |
| MS.gene032323 | MS.gene057101 | PPI |
| MS.gene96778 | MS.gene057101 | PPI |
| MS.gene047859 | MS.gene057101 | PPI |
| MS.gene93598 | MS.gene057101 | PPI |
| MS.gene46213 | MS.gene057101 | PPI |
| MS.gene031482 | MS.gene057101 | PPI |
| MS.gene80048 | MS.gene057101 | PPI |
| MS.gene56142 | MS.gene057101 | PPI |
| MS.gene26890 | MS.gene057101 | PPI |
| MS.gene25107 | MS.gene057101 | PPI |
| MS.gene56523 | MS.gene057101 | PPI |
| MS.gene38996 | MS.gene057101 | PPI |
| MS.gene30421 | MS.gene057101 | PPI |
| MS.gene93612 | MS.gene057101 | PPI |
| MS.gene26468 | MS.gene057101 | PPI |
| MS.gene32240 | MS.gene057101 | PPI |
| MS.gene074437 | MS.gene057101 | PPI |
| MS.gene059369 | MS.gene057101 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057101.t1 | MTR_5g091020 | 98.915 | 922 | 10 | 0 | 1 | 922 | 1 | 922 | 0.0 | 1870 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057101.t1 | AT1G06590 | 65.939 | 916 | 303 | 4 | 1 | 913 | 1 | 910 | 0.0 | 1174 |
Find 183 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAAGCTGATCAGGTTATTT+TGG | 0.134029 | 5.3:+73168715 | MS.gene057101:CDS |
| CTAATGAGTTCTTCCAATTT+TGG | 0.138756 | 5.3:-73168414 | None:intergenic |
| CAAGTTCATCACACAGTTTC+TGG | 0.154029 | 5.3:-73176879 | None:intergenic |
| TTTGGATGCGAACAGTAATT+TGG | 0.171286 | 5.3:+73168733 | MS.gene057101:CDS |
| CTGAGCTTCATGGAAGATTT+TGG | 0.180753 | 5.3:-73174340 | None:intergenic |
| TGTTGTTGTTTAGGAATAAT+TGG | 0.207157 | 5.3:+73168671 | MS.gene057101:intron |
| CAACATTTAGCAGTCTTTAA+AGG | 0.213041 | 5.3:+73176459 | MS.gene057101:CDS |
| TCAAACTTGCTGTTTGAAAA+TGG | 0.214893 | 5.3:+73172114 | MS.gene057101:CDS |
| GCCAAGTTGCTTCCCAGTTT+TGG | 0.226282 | 5.3:-73168455 | None:intergenic |
| ATATTCACCGTTTACTAGTA+TGG | 0.229148 | 5.3:+73172170 | MS.gene057101:CDS |
| TGAAATTGCTTTATTATGTT+TGG | 0.240051 | 5.3:+73171585 | MS.gene057101:CDS |
| ACTACCTTGGAAACGTTAAC+TGG | 0.242741 | 5.3:-73174370 | None:intergenic |
| GAAATTGCTTTATTATGTTT+GGG | 0.268224 | 5.3:+73171586 | MS.gene057101:CDS |
| GCTTTGGCATCACCTGTTAT+TGG | 0.274264 | 5.3:+73176904 | MS.gene057101:CDS |
| TCTGCGACAGCTACAGAAAT+TGG | 0.287798 | 5.3:+73170184 | MS.gene057101:CDS |
| TTCATTTCAGAAACATATAT+TGG | 0.294740 | 5.3:+73180099 | MS.gene057101:CDS |
| GGATGATGCATTTCCACTTT+GGG | 0.312657 | 5.3:+73171608 | MS.gene057101:CDS |
| GCAGTCATGTGATGATATTT+TGG | 0.317956 | 5.3:+73168389 | MS.gene057101:intron |
| TTGGATGCGAACAGTAATTT+GGG | 0.319904 | 5.3:+73168734 | MS.gene057101:CDS |
| CAGAAAATATTTGAACCATT+TGG | 0.320684 | 5.3:-73174591 | None:intergenic |
| CAAAGGCCCTTGTTATCATT+TGG | 0.320708 | 5.3:+73174316 | MS.gene057101:CDS |
| TGAGATTGATAAGCCAAAAC+TGG | 0.320794 | 5.3:+73168442 | MS.gene057101:CDS |
| ATAATTGGAGGTCCCGATTC+AGG | 0.332819 | 5.3:+73168686 | MS.gene057101:CDS |
| CCTCCATGACCAAGAATTAT+CGG | 0.342968 | 5.3:-73178389 | None:intergenic |
| TTCTGTCAGGATTCTGGATC+TGG | 0.349192 | 5.3:+73174609 | MS.gene057101:CDS |
| GTTGTTGGCTTCCAATCATT+TGG | 0.351718 | 5.3:+73172275 | MS.gene057101:CDS |
| CTTCGCCATTGCCAAATGAT+TGG | 0.353923 | 5.3:-73172286 | None:intergenic |
| TGGGCATCCAAAGCTGGCTT+TGG | 0.360157 | 5.3:+73171627 | MS.gene057101:CDS |
| TCTTAATTTATCACTCTGTT+TGG | 0.362155 | 5.3:-73169898 | None:intergenic |
| ACCTGTTATTGGTGTAGATA+TGG | 0.366729 | 5.3:+73176915 | MS.gene057101:CDS |
| TTTCAATTTGCTACCGTTTG+AGG | 0.370631 | 5.3:+73168784 | MS.gene057101:CDS |
| TTCACCTCCAAAGCCAGCTT+TGG | 0.375269 | 5.3:-73171634 | None:intergenic |
| TTTAAAGCTAAAACGGTTGT+TGG | 0.375594 | 5.3:+73172260 | MS.gene057101:CDS |
| TGCTCTGCAGTTTCATGAAT+TGG | 0.376439 | 5.3:+73180000 | MS.gene057101:intron |
| AATGGCGAAGTTTGATTTAA+CGG | 0.376800 | 5.3:+73172299 | MS.gene057101:CDS |
| TACGAAGAAACTAGTTTAGA+TGG | 0.377685 | 5.3:+73169486 | MS.gene057101:CDS |
| ATGTTGGTTGGGCACAGAAC+TGG | 0.377959 | 5.3:-73174650 | None:intergenic |
| TTACTTTGGCGGTCTTCATA+TGG | 0.381475 | 5.3:-73169930 | None:intergenic |
| CCACTTTGGGCATCCAAAGC+TGG | 0.381512 | 5.3:+73171621 | MS.gene057101:CDS |
| GCAACAGCTTGGGAGTTATA+TGG | 0.382924 | 5.3:+73174723 | MS.gene057101:CDS |
| GCTGAGCTATGGCTCTCTCT+TGG | 0.386122 | 5.3:+73178320 | MS.gene057101:CDS |
| TGACAAACTTGGGCAATTAG+AGG | 0.387249 | 5.3:+73180057 | MS.gene057101:CDS |
| GGTAGTGCCGTTTCTTTGAA+TGG | 0.388272 | 5.3:+73170149 | MS.gene057101:CDS |
| ACTAAACTCAGAAGTGCATT+AGG | 0.400537 | 5.3:-73169642 | None:intergenic |
| TGATGATTATACTGCTGCTT+TGG | 0.403956 | 5.3:+73170356 | MS.gene057101:CDS |
| TCAAGCACTGCTGGGATACT+AGG | 0.406665 | 5.3:+73172141 | MS.gene057101:CDS |
| GGTAAACTAACCTCGTATAT+CGG | 0.408448 | 5.3:-73168544 | None:intergenic |
| AATGGCATCTCAAGCACTGC+TGG | 0.409205 | 5.3:+73172132 | MS.gene057101:CDS |
| CAGAAAATTTAAAGCTAAAA+CGG | 0.410366 | 5.3:+73172253 | MS.gene057101:CDS |
| GGGATGATGCATTTCCACTT+TGG | 0.412550 | 5.3:+73171607 | MS.gene057101:CDS |
| AATTCTTGGTCATGGAGGTT+TGG | 0.413839 | 5.3:+73178394 | MS.gene057101:CDS |
| AGAAGAAATTGAAGCAAGAA+AGG | 0.415329 | 5.3:+73169584 | MS.gene057101:CDS |
| TTCTGAAGAACTCCAACCTT+TGG | 0.419782 | 5.3:+73178994 | MS.gene057101:CDS |
| AAACTTACTCGATGCAGTTC+AGG | 0.424047 | 5.3:-73170209 | None:intergenic |
| GCCCAACCAACATCAATTCC+TGG | 0.424701 | 5.3:+73174660 | MS.gene057101:CDS |
| AGCTTCGATATCACCTGAAT+CGG | 0.425601 | 5.3:-73168699 | None:intergenic |
| TCCATATCTACACCAATAAC+AGG | 0.426582 | 5.3:-73176916 | None:intergenic |
| TCCAGGAATTGATGTTGGTT+GGG | 0.434584 | 5.3:-73174661 | None:intergenic |
| TTTGCTTGCTGAGATTCATA+AGG | 0.436669 | 5.3:+73177692 | MS.gene057101:CDS |
| AAGTTCATCACACAGTTTCT+GGG | 0.437398 | 5.3:-73176878 | None:intergenic |
| TGCTAAAGTATATGCAAGAT+TGG | 0.437680 | 5.3:-73172085 | None:intergenic |
| GCACTTCTGAGTTTAGTAGA+TGG | 0.438748 | 5.3:+73169648 | MS.gene057101:CDS |
| ATCCAGGAATTGATGTTGGT+TGG | 0.441435 | 5.3:-73174662 | None:intergenic |
| GCATCCAAAGCTGGCTTTGG+AGG | 0.444711 | 5.3:+73171630 | MS.gene057101:CDS |
| GTGTGATGAACTTGGTGCTT+TGG | 0.447118 | 5.3:+73176888 | MS.gene057101:CDS |
| TGGGCATGTACTGAGCTTCA+TGG | 0.453351 | 5.3:-73174350 | None:intergenic |
| GAAAGGCTTGCTAAAGCATA+TGG | 0.453725 | 5.3:-73178242 | None:intergenic |
| CTCTTACTTTAGCTGAGCTA+TGG | 0.457524 | 5.3:+73178309 | MS.gene057101:CDS |
| GAGGTTTGGAGCTCCGCTCA+CGG | 0.457750 | 5.3:+73178408 | MS.gene057101:CDS |
| TATACTTCGTGCAACAGCTT+GGG | 0.460709 | 5.3:+73174713 | MS.gene057101:CDS |
| TGAAGAACTCCAACCTTTGG+AGG | 0.461943 | 5.3:+73178997 | MS.gene057101:CDS |
| GCCAAAACTGGGAAGCAACT+TGG | 0.464201 | 5.3:+73168454 | MS.gene057101:CDS |
| GTAGTGCCGTTTCTTTGAAT+GGG | 0.464451 | 5.3:+73170150 | MS.gene057101:CDS |
| TTCAAACCCATTCAAAGAAA+CGG | 0.465431 | 5.3:-73170156 | None:intergenic |
| ATTCTGCATATCATTTAACT+TGG | 0.466902 | 5.3:+73178265 | MS.gene057101:CDS |
| TGTCATAGACCATGGCCATC+AGG | 0.469456 | 5.3:-73180039 | None:intergenic |
| TGTTGGTTGGGCACAGAACT+GGG | 0.472742 | 5.3:-73174649 | None:intergenic |
| CCCGTACCATGTTACTTTGG+CGG | 0.476806 | 5.3:-73169941 | None:intergenic |
| GAAATACCCATACTAGTAAA+CGG | 0.476976 | 5.3:-73172177 | None:intergenic |
| TTTATATCTGGCAGGAACTC+AGG | 0.477934 | 5.3:+73174472 | MS.gene057101:intron |
| TCTAAACTAGTTTCTTCGTA+TGG | 0.481801 | 5.3:-73169483 | None:intergenic |
| CTTTGCTGCGAGCAAGGTAC+GGG | 0.483239 | 5.3:-73176968 | None:intergenic |
| GCTTTGCTGCGAGCAAGGTA+CGG | 0.484021 | 5.3:-73176969 | None:intergenic |
| AGGTGATATCGAAGCTGATC+AGG | 0.492525 | 5.3:+73168706 | MS.gene057101:CDS |
| CAATTGTTTGTTCTCTTGAG+AGG | 0.495715 | 5.3:+73172216 | MS.gene057101:CDS |
| CGCACAAACTGGCAGATACA+AGG | 0.495982 | 5.3:+73169993 | MS.gene057101:CDS |
| TTTCCGATAATTCTTGGTCA+TGG | 0.496921 | 5.3:+73178386 | MS.gene057101:CDS |
| CTTCATGAGCATGCTTTACA+CGG | 0.497677 | 5.3:+73176742 | MS.gene057101:CDS |
| CCGGCTGGTAATAATAGCTC+TGG | 0.501012 | 5.3:+73171556 | MS.gene057101:CDS |
| CTTGCTTTGCTGATGCATCA+AGG | 0.501716 | 5.3:+73176039 | MS.gene057101:CDS |
| CTCAAGATCTACGCTCCTCC+AGG | 0.503478 | 5.3:+73167870 | MS.gene057101:CDS |
| AGTTCTGCAATGACAATTGA+TGG | 0.505348 | 5.3:+73174531 | MS.gene057101:CDS |
| AGCAGTTCGTGTTTCTCAGC+AGG | 0.505632 | 5.3:+73171812 | MS.gene057101:CDS |
| GACAAAAGTGCAGGGAAAGA+AGG | 0.506651 | 5.3:+73171517 | MS.gene057101:intron |
| TATTCACCGTTTACTAGTAT+GGG | 0.513278 | 5.3:+73172171 | MS.gene057101:CDS |
| AGGAATTTACAAAAGCCAAA+TGG | 0.514925 | 5.3:+73174576 | MS.gene057101:CDS |
| TATCCCGTACCATGTTACTT+TGG | 0.516958 | 5.3:-73169944 | None:intergenic |
| GGCTTCCAATCATTTGGCAA+TGG | 0.517340 | 5.3:+73172281 | MS.gene057101:CDS |
| GCAAGGTACGGGCATGGCGA+AGG | 0.518844 | 5.3:-73176957 | None:intergenic |
| CAGAAACTGTGTGATGAACT+TGG | 0.519173 | 5.3:+73176880 | MS.gene057101:CDS |
| CCTTCAGTACAGCTTGGCTC+AGG | 0.520226 | 5.3:+73174556 | MS.gene057101:CDS |
| GCTACAGATTCGAACGGAAA+AGG | 0.520404 | 5.3:-73167906 | None:intergenic |
| CTATGTGATACAAATTTCAA+TGG | 0.520415 | 5.3:+73178458 | MS.gene057101:CDS |
| GGTTCAGTGCCCGTGTGGCA+TGG | 0.523020 | 5.3:-73178349 | None:intergenic |
| AGGTTTGGAGCTCCGCTCAC+GGG | 0.524912 | 5.3:+73178409 | MS.gene057101:CDS |
| CTACCTTGGAAACGTTAACT+GGG | 0.525003 | 5.3:-73174369 | None:intergenic |
| ATATACTTCGTGCAACAGCT+TGG | 0.526105 | 5.3:+73174712 | MS.gene057101:CDS |
| ATTTGTAACACATGCAAAAG+AGG | 0.526228 | 5.3:-73177635 | None:intergenic |
| ACCGCCAAAGTAACATGGTA+CGG | 0.526359 | 5.3:+73169940 | MS.gene057101:CDS |
| GGAAAACGCCATACCTCAAA+CGG | 0.526617 | 5.3:-73168797 | None:intergenic |
| AGTACTTGCAAAACAGATCC+AGG | 0.526714 | 5.3:-73174678 | None:intergenic |
| ACTTGGGCAATTAGAGGAAA+GGG | 0.529233 | 5.3:+73180063 | MS.gene057101:CDS |
| GCCATGGTCTATGACAAACT+TGG | 0.534302 | 5.3:+73180046 | MS.gene057101:CDS |
| GTAGCTCAACATAATCGTCT+TGG | 0.536260 | 5.3:+73167924 | MS.gene057101:CDS |
| CTGGAGGAGCGTAGATCTTG+AGG | 0.540154 | 5.3:-73167869 | None:intergenic |
| TCCCTATGTTTGTTAAGAGA+CGG | 0.541201 | 5.3:-73169428 | None:intergenic |
| GTCTGCTTACCTCCAAAGGT+TGG | 0.541541 | 5.3:-73179006 | None:intergenic |
| ATGGTGCCTTCAGTACAGCT+TGG | 0.541706 | 5.3:+73174550 | MS.gene057101:CDS |
| TCTGCAGTTTCATGAATTGG+CGG | 0.545463 | 5.3:+73180003 | MS.gene057101:intron |
| GCTTCGATATCACCTGAATC+GGG | 0.550133 | 5.3:-73168698 | None:intergenic |
| AACTTGGGCAATTAGAGGAA+AGG | 0.550820 | 5.3:+73180062 | MS.gene057101:CDS |
| CAGAGTGATAAATTAAGAGT+AGG | 0.551438 | 5.3:+73169903 | MS.gene057101:CDS |
| ACAGATCCAGGAATTGATGT+TGG | 0.553520 | 5.3:-73174666 | None:intergenic |
| CTGCGAGCAAGGTACGGGCA+TGG | 0.554584 | 5.3:-73176963 | None:intergenic |
| TAAATGATATGCAGAATGAA+AGG | 0.559046 | 5.3:-73178259 | None:intergenic |
| TTAGGTGTATGAAGATGAAA+CGG | 0.559249 | 5.3:-73169624 | None:intergenic |
| TGCCGTCTCTTAACAAACAT+AGG | 0.559859 | 5.3:+73169426 | MS.gene057101:CDS |
| GCAGTCTTTAAAGGATACAA+AGG | 0.560313 | 5.3:+73176468 | MS.gene057101:CDS |
| TAAAGTCTGCTTACCTCCAA+AGG | 0.561354 | 5.3:-73179010 | None:intergenic |
| ATGCAGCGGATGTTTAAAGC+TGG | 0.564667 | 5.3:+73176855 | MS.gene057101:intron |
| CTTCTCTGCAGCATGTTCAA+AGG | 0.566366 | 5.3:+73174299 | MS.gene057101:intron |
| GAATTGCTTTGCTGCGAGCA+AGG | 0.566474 | 5.3:-73176974 | None:intergenic |
| GCCGTCTCTTAACAAACATA+GGG | 0.569130 | 5.3:+73169427 | MS.gene057101:CDS |
| CCATGGTCTATGACAAACTT+GGG | 0.572262 | 5.3:+73180047 | MS.gene057101:CDS |
| CGGGCACTGAACCTTGTCCA+TGG | 0.573001 | 5.3:+73178359 | MS.gene057101:CDS |
| GGCTGAAGCATTCTACCTGA+TGG | 0.574890 | 5.3:+73180024 | MS.gene057101:CDS |
| ATGGCATCTCAAGCACTGCT+GGG | 0.575777 | 5.3:+73172133 | MS.gene057101:CDS |
| AAACTAGTTTCTTCGTATGG+AGG | 0.578782 | 5.3:-73169480 | None:intergenic |
| AGAATACGAGAACATGGACT+TGG | 0.579108 | 5.3:+73169536 | MS.gene057101:CDS |
| CCAGAGCTATTATTACCAGC+CGG | 0.579807 | 5.3:-73171556 | None:intergenic |
| AGCTAAAGTAAGAGTAGCTG+AGG | 0.583735 | 5.3:-73178300 | None:intergenic |
| CCCAAGTTTGTCATAGACCA+TGG | 0.588238 | 5.3:-73180047 | None:intergenic |
| CCGCCAAAGTAACATGGTAC+GGG | 0.590022 | 5.3:+73169941 | MS.gene057101:CDS |
| CCTGAGCCAAGCTGTACTGA+AGG | 0.590820 | 5.3:-73174556 | None:intergenic |
| ATGAAACGGAACTCTTCCAC+TGG | 0.590952 | 5.3:-73169610 | None:intergenic |
| GAATTATCGGAAAAGCTCCA+TGG | 0.592292 | 5.3:-73178376 | None:intergenic |
| ATGCCCAGTTAACGTTTCCA+AGG | 0.595544 | 5.3:+73174366 | MS.gene057101:CDS |
| CCGATAATTCTTGGTCATGG+AGG | 0.595973 | 5.3:+73178389 | MS.gene057101:CDS |
| ATTCAATATATACTAACAAG+AGG | 0.598080 | 5.3:-73180151 | None:intergenic |
| TGTTGTTTAGGAATAATTGG+AGG | 0.608292 | 5.3:+73168674 | MS.gene057101:intron |
| AAATTGCTTTATTATGTTTG+GGG | 0.609522 | 5.3:+73171587 | MS.gene057101:CDS |
| GAGATTGATAAGCCAAAACT+GGG | 0.611852 | 5.3:+73168443 | MS.gene057101:CDS |
| AGCGCATTTATGCGAGACAT+AGG | 0.613638 | 5.3:-73176005 | None:intergenic |
| TTTGTAACACATGCAAAAGA+GGG | 0.615678 | 5.3:-73177634 | None:intergenic |
| CAGCTTGGGAGTTATATGGC+AGG | 0.615717 | 5.3:+73174727 | MS.gene057101:CDS |
| TGGATGCGAACAGTAATTTG+GGG | 0.621377 | 5.3:+73168735 | MS.gene057101:CDS |
| AAAGGAACGGAAACTTGACC+TGG | 0.622958 | 5.3:-73167888 | None:intergenic |
| TCGGAAAAGCTCCATGGACA+AGG | 0.623063 | 5.3:-73178370 | None:intergenic |
| TTGGATCAAGCCATGCCACA+CGG | 0.623878 | 5.3:+73178339 | MS.gene057101:CDS |
| TGTTGAGCTACAGATTCGAA+CGG | 0.626645 | 5.3:-73167912 | None:intergenic |
| ATACAGAGCGATACTTTGTG+TGG | 0.626980 | 5.3:-73167843 | None:intergenic |
| TTCATGAGCATGCTTTACAC+GGG | 0.631914 | 5.3:+73176743 | MS.gene057101:CDS |
| TGGATCAAGCCATGCCACAC+GGG | 0.632664 | 5.3:+73178340 | MS.gene057101:CDS |
| CCAGCTTTGGATGCCCAAAG+TGG | 0.638618 | 5.3:-73171621 | None:intergenic |
| TGAAGACCGCCAAAGTAACA+TGG | 0.640921 | 5.3:+73169935 | MS.gene057101:CDS |
| AGAAATTGAAGCAAGAAAGG+AGG | 0.641409 | 5.3:+73169587 | MS.gene057101:CDS |
| TGTTTGGATACTGAATCAGC+AGG | 0.647779 | 5.3:-73169882 | None:intergenic |
| CAACGATATAGGCCCGTGAG+CGG | 0.655234 | 5.3:-73178421 | None:intergenic |
| GGAGTTATCGTAAATGCACC+TGG | 0.655237 | 5.3:-73167822 | None:intergenic |
| GTATTCAGAATACGAGAACA+TGG | 0.657580 | 5.3:+73169530 | MS.gene057101:CDS |
| GAAGCAAGAAAGGAGGCCAG+TGG | 0.662714 | 5.3:+73169594 | MS.gene057101:CDS |
| AGCATTCTACCTGATGGCCA+TGG | 0.666689 | 5.3:+73180030 | MS.gene057101:CDS |
| AGATTCGAACGGAAAAGGAA+CGG | 0.668299 | 5.3:-73167901 | None:intergenic |
| CGCAGCAAAGCAATTCCGAG+AGG | 0.671365 | 5.3:+73176981 | MS.gene057101:CDS |
| TTTGGACCAAATGATAACAA+GGG | 0.679717 | 5.3:-73174322 | None:intergenic |
| GTTGGTTGGGCACAGAACTG+GGG | 0.696775 | 5.3:-73174648 | None:intergenic |
| GACAAGGTTCAGTGCCCGTG+TGG | 0.697635 | 5.3:-73178354 | None:intergenic |
| GGAACGGAAACTTGACCTGG+AGG | 0.699710 | 5.3:-73167885 | None:intergenic |
| GAGCTATTATTACCAGCCGG+AGG | 0.710144 | 5.3:-73171553 | None:intergenic |
| GCTGTGATGTTGAAACAACC+AGG | 0.711853 | 5.3:+73167804 | MS.gene057101:CDS |
| TTATCAGAAATCTGGCAATG+CGG | 0.719122 | 5.3:+73178208 | MS.gene057101:intron |
| GTACGGGATATTGATCCCAG+TGG | 0.719445 | 5.3:+73169957 | MS.gene057101:CDS |
| GTTCATCTTAGCTCTCACCA+AGG | 0.742877 | 5.3:+73167950 | MS.gene057101:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 73167801 | 73180171 | 73167801 | ID=MS.gene057101 |
| chr5.3 | mRNA | 73167801 | 73180171 | 73167801 | ID=MS.gene057101.t1;Parent=MS.gene057101 |
| chr5.3 | exon | 73167801 | 73167971 | 73167801 | ID=MS.gene057101.t1.exon1;Parent=MS.gene057101.t1 |
| chr5.3 | CDS | 73167801 | 73167971 | 73167801 | ID=cds.MS.gene057101.t1;Parent=MS.gene057101.t1 |
| chr5.3 | exon | 73168393 | 73168555 | 73168393 | ID=MS.gene057101.t1.exon2;Parent=MS.gene057101.t1 |
| chr5.3 | CDS | 73168393 | 73168555 | 73168393 | ID=cds.MS.gene057101.t1;Parent=MS.gene057101.t1 |
| chr5.3 | exon | 73168684 | 73168805 | 73168684 | ID=MS.gene057101.t1.exon3;Parent=MS.gene057101.t1 |
| chr5.3 | CDS | 73168684 | 73168805 | 73168684 | ID=cds.MS.gene057101.t1;Parent=MS.gene057101.t1 |
| chr5.3 | exon | 73169420 | 73169669 | 73169420 | ID=MS.gene057101.t1.exon4;Parent=MS.gene057101.t1 |
| chr5.3 | CDS | 73169420 | 73169669 | 73169420 | ID=cds.MS.gene057101.t1;Parent=MS.gene057101.t1 |
| chr5.3 | exon | 73169871 | 73170048 | 73169871 | ID=MS.gene057101.t1.exon5;Parent=MS.gene057101.t1 |
| chr5.3 | CDS | 73169871 | 73170048 | 73169871 | ID=cds.MS.gene057101.t1;Parent=MS.gene057101.t1 |
| chr5.3 | exon | 73170145 | 73170223 | 73170145 | ID=MS.gene057101.t1.exon6;Parent=MS.gene057101.t1 |
| chr5.3 | CDS | 73170145 | 73170223 | 73170145 | ID=cds.MS.gene057101.t1;Parent=MS.gene057101.t1 |
| chr5.3 | exon | 73170321 | 73170406 | 73170321 | ID=MS.gene057101.t1.exon7;Parent=MS.gene057101.t1 |
| chr5.3 | CDS | 73170321 | 73170406 | 73170321 | ID=cds.MS.gene057101.t1;Parent=MS.gene057101.t1 |
| chr5.3 | exon | 73171525 | 73171651 | 73171525 | ID=MS.gene057101.t1.exon8;Parent=MS.gene057101.t1 |
| chr5.3 | CDS | 73171525 | 73171651 | 73171525 | ID=cds.MS.gene057101.t1;Parent=MS.gene057101.t1 |
| chr5.3 | exon | 73171801 | 73171833 | 73171801 | ID=MS.gene057101.t1.exon9;Parent=MS.gene057101.t1 |
| chr5.3 | CDS | 73171801 | 73171833 | 73171801 | ID=cds.MS.gene057101.t1;Parent=MS.gene057101.t1 |
| chr5.3 | exon | 73172072 | 73172320 | 73172072 | ID=MS.gene057101.t1.exon10;Parent=MS.gene057101.t1 |
| chr5.3 | CDS | 73172072 | 73172320 | 73172072 | ID=cds.MS.gene057101.t1;Parent=MS.gene057101.t1 |
| chr5.3 | exon | 73174310 | 73174387 | 73174310 | ID=MS.gene057101.t1.exon11;Parent=MS.gene057101.t1 |
| chr5.3 | CDS | 73174310 | 73174387 | 73174310 | ID=cds.MS.gene057101.t1;Parent=MS.gene057101.t1 |
| chr5.3 | exon | 73174486 | 73174748 | 73174486 | ID=MS.gene057101.t1.exon12;Parent=MS.gene057101.t1 |
| chr5.3 | CDS | 73174486 | 73174748 | 73174486 | ID=cds.MS.gene057101.t1;Parent=MS.gene057101.t1 |
| chr5.3 | exon | 73176001 | 73176060 | 73176001 | ID=MS.gene057101.t1.exon13;Parent=MS.gene057101.t1 |
| chr5.3 | CDS | 73176001 | 73176060 | 73176001 | ID=cds.MS.gene057101.t1;Parent=MS.gene057101.t1 |
| chr5.3 | exon | 73176422 | 73176489 | 73176422 | ID=MS.gene057101.t1.exon14;Parent=MS.gene057101.t1 |
| chr5.3 | CDS | 73176422 | 73176489 | 73176422 | ID=cds.MS.gene057101.t1;Parent=MS.gene057101.t1 |
| chr5.3 | exon | 73176659 | 73176764 | 73176659 | ID=MS.gene057101.t1.exon15;Parent=MS.gene057101.t1 |
| chr5.3 | CDS | 73176659 | 73176764 | 73176659 | ID=cds.MS.gene057101.t1;Parent=MS.gene057101.t1 |
| chr5.3 | exon | 73176861 | 73177002 | 73176861 | ID=MS.gene057101.t1.exon16;Parent=MS.gene057101.t1 |
| chr5.3 | CDS | 73176861 | 73177002 | 73176861 | ID=cds.MS.gene057101.t1;Parent=MS.gene057101.t1 |
| chr5.3 | exon | 73177615 | 73177713 | 73177615 | ID=MS.gene057101.t1.exon17;Parent=MS.gene057101.t1 |
| chr5.3 | CDS | 73177615 | 73177713 | 73177615 | ID=cds.MS.gene057101.t1;Parent=MS.gene057101.t1 |
| chr5.3 | exon | 73178215 | 73178479 | 73178215 | ID=MS.gene057101.t1.exon18;Parent=MS.gene057101.t1 |
| chr5.3 | CDS | 73178215 | 73178479 | 73178215 | ID=cds.MS.gene057101.t1;Parent=MS.gene057101.t1 |
| chr5.3 | exon | 73178951 | 73179018 | 73178951 | ID=MS.gene057101.t1.exon19;Parent=MS.gene057101.t1 |
| chr5.3 | CDS | 73178951 | 73179018 | 73178951 | ID=cds.MS.gene057101.t1;Parent=MS.gene057101.t1 |
| chr5.3 | exon | 73180010 | 73180171 | 73180010 | ID=MS.gene057101.t1.exon20;Parent=MS.gene057101.t1 |
| chr5.3 | CDS | 73180010 | 73180171 | 73180010 | ID=cds.MS.gene057101.t1;Parent=MS.gene057101.t1 |
| Gene Sequence |
| Protein sequence |
