AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057796


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057796.t1 MTR_4g072660 91.954 87 7 0 1 87 1 87 2.51e-56 168
MS.gene057796.t1 MTR_4g072730 86.813 91 7 1 1 86 1 91 1.51e-54 164
MS.gene057796.t1 MTR_4g072620 84.783 92 9 1 1 87 1 92 6.08e-54 162
MS.gene057796.t1 MTR_4g072480 83.696 92 10 1 1 87 1 92 9.67e-53 159
MS.gene057796.t1 MTR_4g072680 80.435 92 13 1 1 87 1 92 6.49e-50 152
MS.gene057796.t1 MTR_4g072460 78.261 92 15 1 1 87 1 92 2.54e-48 148
MS.gene057796.t1 MTR_4g072500 77.174 92 16 1 1 87 1 92 1.14e-47 146
MS.gene057796.t1 MTR_4g072570 75.000 92 18 1 1 87 1 92 2.24e-46 143
MS.gene057796.t1 MTR_4g072530 74.444 90 18 1 1 85 1 90 7.62e-45 139
MS.gene057796.t1 MTR_4g072640 74.444 90 18 1 1 85 1 90 2.01e-44 138
MS.gene057796.t1 MTR_4g072310 68.817 93 23 1 1 87 1 93 8.53e-44 137
MS.gene057796.t1 MTR_4g072860 69.892 93 22 1 1 87 1 93 4.05e-43 135
MS.gene057796.t1 MTR_4g072880 68.817 93 23 1 1 87 1 93 4.67e-43 135
MS.gene057796.t1 MTR_4g072250 73.118 93 18 2 1 87 1 92 4.79e-43 135
MS.gene057796.t1 MTR_4g072270 67.742 93 24 1 1 87 1 93 1.05e-42 134
MS.gene057796.t1 MTR_4g072490 71.765 85 24 0 1 85 1 85 3.42e-42 132
MS.gene057796.t1 MTR_3g084150 67.391 92 25 1 1 87 1 92 1.66e-41 131
MS.gene057796.t1 MTR_4g072740 72.941 85 23 0 1 85 1 85 3.66e-41 130
MS.gene057796.t1 MTR_4g072550 81.579 76 14 0 12 87 28 103 6.53e-41 130
MS.gene057796.t1 MTR_5g008360 80.822 73 14 0 15 87 11 83 8.98e-41 129
MS.gene057796.t1 MTR_4g072240 65.934 91 25 1 1 85 1 91 1.07e-40 129
MS.gene057796.t1 MTR_5g008370 81.081 74 14 0 13 86 18 91 1.28e-40 130
MS.gene057796.t1 MTR_3g084240 67.391 92 25 1 1 87 1 92 1.49e-40 129
MS.gene057796.t1 MTR_3g084180 66.304 92 26 1 1 87 1 92 1.70e-40 128
MS.gene057796.t1 MTR_4g072580 68.235 85 27 0 1 85 1 85 2.54e-40 128
MS.gene057796.t1 MTR_4g072220 65.934 91 25 1 1 85 1 91 2.77e-40 128
MS.gene057796.t1 MTR_3g084170 67.391 92 25 1 1 87 1 92 3.04e-40 128
MS.gene057796.t1 MTR_4g072600 69.412 85 26 0 1 85 1 85 3.45e-40 127
MS.gene057796.t1 MTR_4g072470 70.588 85 25 0 1 85 1 85 3.88e-40 127
MS.gene057796.t1 MTR_8g461410 65.217 92 27 1 1 87 1 92 4.71e-40 127
MS.gene057796.t1 MTR_4g072230 66.667 93 23 2 1 87 1 91 5.45e-40 127
MS.gene057796.t1 MTR_4g072870 65.934 91 25 1 1 85 1 91 1.09e-39 126
MS.gene057796.t1 MTR_4g072330 68.182 88 25 1 1 85 1 88 3.38e-39 125
MS.gene057796.t1 MTR_4g072850 68.478 92 22 1 1 85 1 92 4.58e-39 125
MS.gene057796.t1 MTR_4g072300 62.637 91 28 1 1 85 1 91 4.89e-39 125
MS.gene057796.t1 MTR_4g072370 67.045 88 26 1 1 85 1 88 8.12e-39 124
MS.gene057796.t1 MTR_4g072630 68.605 86 26 1 1 85 1 86 1.16e-38 124
MS.gene057796.t1 MTR_4g072590 72.941 85 23 0 1 85 1 85 1.88e-38 123
MS.gene057796.t1 MTR_3g084220 66.304 92 26 1 1 87 1 92 2.47e-38 123
MS.gene057796.t1 MTR_3g117630 75.000 80 19 1 7 85 11 90 3.58e-38 122
MS.gene057796.t1 MTR_4g072610 72.941 85 22 1 1 85 1 84 5.32e-38 122
MS.gene057796.t1 MTR_4g072540 69.767 86 25 1 1 85 1 86 6.01e-38 122
MS.gene057796.t1 MTR_4g072890 62.637 91 28 1 1 85 1 91 8.46e-38 122
MS.gene057796.t1 MTR_4g050700 63.441 93 28 1 1 87 1 93 3.07e-37 120
MS.gene057796.t1 MTR_2g012410 63.441 93 28 1 1 87 1 93 3.07e-37 120
MS.gene057796.t1 MTR_4g072720 69.767 86 25 1 1 85 1 86 4.10e-37 120
MS.gene057796.t1 MTR_4g072465 63.953 86 30 1 1 85 1 86 4.72e-37 119
MS.gene057796.t1 MTR_4g072380 68.605 86 26 1 1 85 1 86 7.21e-37 119
MS.gene057796.t1 MTR_4g072830 65.517 87 27 1 1 84 1 87 7.79e-37 119
MS.gene057796.t1 MTR_3g110038 64.444 90 27 1 1 85 1 90 9.31e-37 119
MS.gene057796.t1 MTR_4g072260 59.140 93 32 1 1 87 1 93 1.32e-36 119
MS.gene057796.t1 MTR_3g084250 64.130 92 28 1 1 87 1 92 1.37e-36 119
MS.gene057796.t1 MTR_3g084260 64.516 93 27 2 1 87 1 93 1.42e-36 119
MS.gene057796.t1 MTR_4g072940 76.389 72 17 0 16 87 53 124 2.01e-36 119
MS.gene057796.t1 MTR_3g110042 67.816 87 23 1 1 82 1 87 2.10e-36 118
MS.gene057796.t1 MTR_3g084210 61.957 92 30 1 1 87 1 92 2.50e-36 118
MS.gene057796.t1 MTR_4g072820 67.059 85 28 0 1 85 1 85 3.71e-36 117
MS.gene057796.t1 MTR_4g072670 67.442 86 27 1 1 85 1 86 9.03e-36 116
MS.gene057796.t1 MTR_4g072650 67.059 85 27 1 1 85 1 84 1.84e-35 115
MS.gene057796.t1 MTR_4g072510 68.605 86 26 1 1 85 1 86 2.37e-35 115
MS.gene057796.t1 MTR_8g461420 61.957 92 30 1 1 87 1 92 3.25e-35 115
MS.gene057796.t1 MTR_3g084190 63.333 90 28 1 1 85 1 90 4.23e-35 115
MS.gene057796.t1 MTR_3g110032 60.215 93 31 1 1 87 1 93 4.50e-35 115
MS.gene057796.t1 MTR_3g084230 60.870 92 31 1 1 87 1 92 1.92e-34 113
MS.gene057796.t1 MTR_3g084160 60.870 92 31 1 1 87 1 92 2.50e-34 113
MS.gene057796.t1 MTR_3g110045 70.833 72 21 0 16 87 80 151 9.59e-34 113
MS.gene057796.t1 MTR_4g072690 69.412 85 26 0 1 85 1 85 9.59e-34 111
MS.gene057796.t1 MTR_4g072450 68.235 85 27 0 1 85 1 85 3.20e-33 110
MS.gene057796.t1 MTR_4g072980 59.091 88 35 1 1 87 8 95 8.06e-33 109
MS.gene057796.t1 MTR_5g008350 66.216 74 25 0 1 74 1 74 2.56e-32 107
MS.gene057796.t1 MTR_4g072770 64.706 85 25 2 1 85 1 80 3.56e-32 107
MS.gene057796.t1 MTR_4g072290 57.471 87 29 1 1 87 1 79 8.10e-31 103
MS.gene057796.t1 MTR_4g072560 53.608 97 32 3 1 84 1 97 8.25e-31 104
MS.gene057796.t1 MTR_3g117640 72.059 68 18 1 20 86 34 101 8.82e-31 104
MS.gene057796.t1 MTR_4g072910 65.672 67 23 0 19 85 34 100 3.08e-30 103
MS.gene057796.t1 MTR_4g072750 58.824 85 26 2 1 76 1 85 6.45e-29 99.4
MS.gene057796.t1 MTR_3g084200 62.500 72 22 1 1 67 1 72 3.70e-27 95.5
MS.gene057796.t1 MTR_3g110035 52.439 82 39 0 6 87 57 138 5.97e-27 95.9
MS.gene057796.t1 MTR_6g077850 55.224 67 30 0 19 85 33 99 1.29e-25 91.3
MS.gene057796.t1 MTR_3g113310 57.353 68 28 1 18 85 40 106 1.78e-25 91.3
MS.gene057796.t1 MTR_3g117610 59.701 67 26 1 18 84 43 108 1.32e-24 89.4
MS.gene057796.t1 MTR_4g072190 57.971 69 28 1 16 84 32 99 3.29e-24 87.8
MS.gene057796.t1 MTR_4g072280 52.000 75 30 1 1 69 1 75 4.34e-22 82.0
MS.gene057796.t1 MTR_4g072930 57.353 68 25 1 22 85 43 110 8.88e-22 82.0
MS.gene057796.t1 MTR_5g021820 51.515 66 31 1 19 84 39 103 1.30e-20 79.0
MS.gene057796.t1 MTR_8g076040 54.545 66 29 1 19 84 40 104 1.81e-20 78.6
MS.gene057796.t1 MTR_4g124750 48.485 66 33 1 19 84 68 132 6.78e-17 70.9
MS.gene057796.t1 MTR_4g072840 47.674 86 18 3 1 85 1 60 9.18e-17 67.8
MS.gene057796.t1 MTR_2g043960 48.485 66 33 1 19 84 75 139 1.07e-16 70.5
MS.gene057796.t1 MTR_7g118010 46.512 86 38 3 2 85 10 89 1.42e-16 68.6
MS.gene057796.t1 MTR_8g461400 43.478 92 21 2 1 87 1 66 2.78e-16 66.6
MS.gene057796.t1 MTR_4g005310 48.485 66 33 1 16 80 58 123 6.23e-16 68.2
MS.gene057796.t1 MTR_8g026730 48.529 68 32 2 20 85 27 93 1.42e-15 66.2
MS.gene057796.t1 MTR_1g024085 55.000 60 26 1 19 78 36 94 3.93e-15 65.9
MS.gene057796.t1 MTR_1g094750 51.613 62 29 1 19 80 49 109 4.83e-15 65.1
MS.gene057796.t1 MTR_3g092220 42.466 73 39 2 15 85 28 99 9.02e-15 64.3
MS.gene057796.t1 MTR_1g009150 52.459 61 28 1 20 80 71 130 1.06e-14 65.5
MS.gene057796.t1 MTR_1g061570 45.588 68 36 1 19 86 18 84 1.13e-14 64.3
MS.gene057796.t1 MTR_8g461210 40.698 86 45 3 4 84 14 98 2.57e-14 63.2
MS.gene057796.t1 MTR_4g072160 47.368 76 35 3 8 80 23 96 3.70e-14 63.2
MS.gene057796.t1 MTR_4g025830 46.970 66 31 2 20 82 79 143 5.92e-14 63.2
MS.gene057796.t1 MTR_0388s0020 43.836 73 37 2 15 84 70 141 7.77e-14 62.8
MS.gene057796.t1 MTR_1g059770 42.169 83 43 3 8 86 36 117 1.59e-13 61.6
MS.gene057796.t1 MTR_4g005320 47.541 61 31 1 20 80 70 129 3.46e-13 61.2
MS.gene057796.t1 MTR_3g109160 47.761 67 34 1 20 86 69 134 4.98e-13 61.2
MS.gene057796.t1 MTR_1g063950 41.538 65 37 1 19 83 47 110 5.68e-13 59.7
MS.gene057796.t1 MTR_8g101530 38.356 73 44 1 8 80 28 99 1.06e-12 59.7
MS.gene057796.t1 MTR_7g104940 41.935 62 35 1 23 84 53 113 2.91e-12 58.2
MS.gene057796.t1 MTR_7g101740 43.750 64 35 1 19 82 39 101 3.71e-12 57.8
MS.gene057796.t1 MTR_2g066830 38.554 83 49 2 2 84 41 121 4.03e-12 58.2
MS.gene057796.t1 MTR_3g105900 69.444 36 11 0 19 54 1171 1206 1.00e-11 59.3
MS.gene057796.t1 MTR_7g104950 37.500 64 39 1 21 84 51 113 1.01e-11 57.0
MS.gene057796.t1 MTR_3g097120 40.000 75 36 2 14 80 3 76 1.15e-11 56.2
MS.gene057796.t1 MTR_4g021810 48.387 62 30 2 20 80 26 86 1.91e-11 55.5
MS.gene057796.t1 MTR_2g095430 45.205 73 31 3 8 72 29 100 2.41e-11 55.8
MS.gene057796.t1 MTR_3g098970 34.211 76 49 1 12 87 45 119 2.62e-11 56.2
MS.gene057796.t1 MTR_1g063310 44.286 70 34 3 19 85 25 92 3.46e-11 54.7
MS.gene057796.t1 MTR_8g101520 44.444 63 34 1 23 85 53 114 4.74e-11 55.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057796.t1 AT4G38840 73.529 68 17 1 19 85 32 99 2.28e-32 108
MS.gene057796.t1 AT5G18080 75.385 65 15 1 22 85 26 90 8.90e-32 106
MS.gene057796.t1 AT5G18060 73.846 65 16 1 22 85 26 90 1.10e-31 106
MS.gene057796.t1 AT5G18020 75.806 62 14 1 22 82 26 87 1.62e-31 106
MS.gene057796.t1 AT3G03850 63.953 86 29 1 3 86 8 93 2.21e-31 105
MS.gene057796.t1 AT5G18030 65.753 73 24 1 14 85 16 88 4.17e-31 105
MS.gene057796.t1 AT5G18050 72.308 65 17 1 22 85 26 90 4.46e-31 105
MS.gene057796.t1 AT2G21200 67.123 73 23 1 13 84 14 86 8.48e-31 103
MS.gene057796.t1 AT3G03840 60.227 88 31 2 3 86 8 95 1.55e-30 103
MS.gene057796.t1 AT4G38825 64.384 73 25 1 14 85 17 89 4.62e-30 102
MS.gene057796.t1 AT4G34770 64.865 74 24 1 15 86 30 103 7.65e-30 102
MS.gene057796.t1 AT5G18010 70.769 65 18 1 22 85 26 90 1.05e-29 101
MS.gene057796.t1 AT4G38850 63.158 76 25 1 10 82 11 86 1.29e-29 101
MS.gene057796.t1 AT3G03820 60.714 84 28 2 8 86 13 96 3.18e-29 100
MS.gene057796.t1 AT2G21210 49.474 95 38 2 1 85 1 95 8.36e-29 99.4
MS.gene057796.t1 AT4G34800 62.195 82 25 3 1 77 1 81 3.27e-28 97.8
MS.gene057796.t1 AT2G21210 49.474 95 38 2 1 85 68 162 4.93e-28 99.8
MS.gene057796.t1 AT4G34810 64.179 67 20 1 20 82 48 114 1.49e-27 97.1
MS.gene057796.t1 AT4G13790 55.844 77 32 1 8 82 13 89 2.59e-27 95.5
MS.gene057796.t1 AT3G03830 59.036 83 30 2 3 82 8 89 5.00e-27 94.7
MS.gene057796.t1 AT4G34780 64.286 70 22 1 18 84 26 95 9.14e-26 92.0
MS.gene057796.t1 AT4G38860 57.353 68 29 0 18 85 38 105 5.42e-24 87.4
MS.gene057796.t1 AT4G34760 57.353 68 28 1 18 85 41 107 1.36e-23 86.7
MS.gene057796.t1 AT1G75580 61.194 67 25 1 18 84 42 107 2.09e-23 86.3
MS.gene057796.t1 AT2G21220 58.462 65 26 1 18 82 38 101 3.49e-23 85.5
MS.gene057796.t1 AT4G34790 65.000 60 19 1 20 77 39 98 1.52e-22 84.0
MS.gene057796.t1 AT2G16580 55.385 65 28 1 18 82 42 105 3.06e-20 78.2
MS.gene057796.t1 AT1G19830 56.338 71 29 2 15 84 43 112 6.53e-20 77.4
MS.gene057796.t1 AT4G36110 54.688 64 28 1 19 82 39 101 3.04e-19 75.5
MS.gene057796.t1 AT2G18010 53.125 64 29 1 19 82 47 109 2.18e-18 73.6
MS.gene057796.t1 AT3G43120 45.588 68 36 1 19 86 78 144 4.42e-17 71.2
MS.gene057796.t1 AT3G20220 51.613 62 28 2 20 80 47 107 6.47e-17 69.7
MS.gene057796.t1 AT5G66260 47.368 76 39 1 10 85 24 98 8.09e-17 68.9
MS.gene057796.t1 AT5G20810 48.485 66 33 1 19 84 78 142 2.73e-16 69.3
MS.gene057796.t1 AT5G20810 48.485 66 33 1 19 84 78 142 4.78e-16 69.3
MS.gene057796.t1 AT1G75590 55.000 60 26 1 19 78 41 99 1.64e-15 67.0
MS.gene057796.t1 AT2G46690 44.828 87 40 4 3 86 11 92 2.17e-15 66.2
MS.gene057796.t1 AT3G51200 49.123 57 28 1 21 77 41 96 2.63e-15 65.5
MS.gene057796.t1 AT4G34750 46.875 64 33 1 19 82 36 98 2.65e-15 66.6
MS.gene057796.t1 AT4G34750 46.875 64 33 1 19 82 36 98 2.65e-15 66.6
MS.gene057796.t1 AT5G10990 53.333 60 27 1 19 78 40 98 4.16e-15 65.9
MS.gene057796.t1 AT1G19840 55.000 60 26 1 19 78 40 98 1.55e-14 64.7
MS.gene057796.t1 AT3G61900 42.045 88 43 3 5 85 11 97 3.20e-14 63.5
MS.gene057796.t1 AT3G60690 42.466 73 38 2 13 82 81 152 1.53e-13 62.4
MS.gene057796.t1 AT2G37030 43.077 65 36 1 19 83 48 111 2.82e-13 60.8
MS.gene057796.t1 AT4G31320 49.153 59 29 1 22 80 82 139 4.02e-13 61.6
MS.gene057796.t1 AT3G09870 50.000 64 29 2 19 80 44 106 5.25e-13 59.7
MS.gene057796.t1 AT4G00880 46.377 69 34 2 19 85 27 94 7.30e-13 59.7
MS.gene057796.t1 AT2G24400 49.180 61 30 1 20 80 64 123 1.05e-12 60.5
MS.gene057796.t1 AT2G45210 41.429 70 37 2 16 82 75 143 1.16e-12 60.1
MS.gene057796.t1 AT3G12830 39.535 86 47 2 4 85 30 114 2.73e-12 58.5
MS.gene057796.t1 AT5G53590 41.667 72 36 2 19 85 45 115 2.81e-12 58.5
MS.gene057796.t1 AT3G03847 44.304 79 36 2 8 80 54 130 2.92e-12 58.2
MS.gene057796.t1 AT4G09530 41.176 68 37 2 22 86 30 97 3.46e-12 57.4
MS.gene057796.t1 AT1G56150 45.455 66 35 1 20 85 38 102 6.24e-12 57.0
MS.gene057796.t1 AT4G12410 45.312 64 31 2 20 80 76 138 3.50e-11 56.2
MS.gene057796.t1 AT3G53250 38.462 65 36 1 19 83 51 111 4.01e-11 55.1
MS.gene057796.t1 AT3G53250 38.462 65 36 1 19 83 82 142 5.12e-11 55.5
MS.gene057796.t1 AT2G36210 43.548 62 35 0 23 84 57 118 8.59e-11 54.7
MS.gene057796.t1 AT1G16510 43.077 65 36 1 20 84 54 117 9.91e-11 54.7

Find 23 sgRNAs with CRISPR-Local

Find 24 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGCAAGAAGTTATATTT+TGG 0.197431 4.4:+36671017 None:intergenic
AATATAACTTCTTGCTTGAA+TGG 0.302151 4.4:-36671013 MS.gene057796:CDS
CGTTTACATACTATTCTAAA+GGG 0.377068 4.4:-36671238 MS.gene057796:CDS
ATTTCAAGACTTGTTGAGTC+AGG 0.388693 4.4:-36671107 MS.gene057796:CDS
AGTCAGGCTGAGGAAGAGTT+TGG 0.389579 4.4:-36671091 MS.gene057796:CDS
CCGTTTACATACTATTCTAA+AGG 0.397138 4.4:-36671239 MS.gene057796:CDS
ATATAACTTCTTGCTTGAAT+GGG 0.408173 4.4:-36671012 MS.gene057796:CDS
CTCAACAAGTCTTGAAATGA+AGG 0.426496 4.4:+36671112 None:intergenic
AAAATCTATAGAAGTGAGAA+AGG 0.452548 4.4:-36671203 MS.gene057796:CDS
CCTTTAGAATAGTATGTAAA+CGG 0.479197 4.4:+36671239 None:intergenic
ACAAGTCTTGAAATGAAGGT+TGG 0.516683 4.4:+36671116 None:intergenic
TGGAAGACATCTTCGGAGCA+TGG 0.525263 4.4:+36671037 None:intergenic
TTTGGATATGATCATCCAAT+GGG 0.545525 4.4:-36671073 MS.gene057796:CDS
AGACTTGTTGAGTCAGGCTG+AGG 0.545710 4.4:-36671101 MS.gene057796:CDS
GGCTATGTTGCAGTGTATGT+TGG 0.553556 4.4:-36671181 MS.gene057796:CDS
GACATCTTCGGAGCATGGAA+TGG 0.559799 4.4:+36671042 None:intergenic
GTTTGGATATGATCATCCAA+TGG 0.573812 4.4:-36671074 MS.gene057796:CDS
AAATCTATAGAAGTGAGAAA+GGG 0.580369 4.4:-36671202 MS.gene057796:CDS
GGAATGGTGAGGCCACCCAT+TGG 0.588290 4.4:+36671058 None:intergenic
GGATATGATCATCCAATGGG+TGG 0.648071 4.4:-36671070 MS.gene057796:CDS
CTTCGGAGCATGGAATGGTG+AGG 0.671810 4.4:+36671047 None:intergenic
GGTTGGTTCAAGTATGACAC+AGG 0.680266 4.4:+36671133 None:intergenic
ATGTTGGAGAGAAACAGAAG+CGG 0.743921 4.4:-36671165 MS.gene057796:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAAATCTATAGAAGTGAGAA+AGG - chr4.4:36671050-36671069 MS.gene057796:CDS 25.0%
! AAATCTATAGAAGTGAGAAA+GGG - chr4.4:36671051-36671070 MS.gene057796:CDS 25.0%
! AATATAACTTCTTGCTTGAA+TGG - chr4.4:36671240-36671259 MS.gene057796:CDS 25.0%
! ATATAACTTCTTGCTTGAAT+GGG - chr4.4:36671241-36671260 MS.gene057796:CDS 25.0%
! CGTTTACATACTATTCTAAA+GGG - chr4.4:36671015-36671034 MS.gene057796:CDS 25.0%
!! TCAAGCAAGAAGTTATATTT+TGG + chr4.4:36671239-36671258 None:intergenic 25.0%
!!! CCTTTAGAATAGTATGTAAA+CGG + chr4.4:36671017-36671036 None:intergenic 25.0%
!!! TATATTTTGGAAGACATCTT+CGG + chr4.4:36671226-36671245 None:intergenic 25.0%
CCGTTTACATACTATTCTAA+AGG - chr4.4:36671014-36671033 MS.gene057796:CDS 30.0%
TTTGGATATGATCATCCAAT+GGG - chr4.4:36671180-36671199 MS.gene057796:CDS 30.0%
ACAAGTCTTGAAATGAAGGT+TGG + chr4.4:36671140-36671159 None:intergenic 35.0%
CTCAACAAGTCTTGAAATGA+AGG + chr4.4:36671144-36671163 None:intergenic 35.0%
GTTTGGATATGATCATCCAA+TGG - chr4.4:36671179-36671198 MS.gene057796:CDS 35.0%
!! ATTTCAAGACTTGTTGAGTC+AGG - chr4.4:36671146-36671165 MS.gene057796:CDS 35.0%
ATGTTGGAGAGAAACAGAAG+CGG - chr4.4:36671088-36671107 MS.gene057796:CDS 40.0%
GGATATGATCATCCAATGGG+TGG - chr4.4:36671183-36671202 MS.gene057796:CDS 45.0%
GGCTATGTTGCAGTGTATGT+TGG - chr4.4:36671072-36671091 MS.gene057796:CDS 45.0%
! GGTTGGTTCAAGTATGACAC+AGG + chr4.4:36671123-36671142 None:intergenic 45.0%
AGTCAGGCTGAGGAAGAGTT+TGG - chr4.4:36671162-36671181 MS.gene057796:CDS 50.0%
GACATCTTCGGAGCATGGAA+TGG + chr4.4:36671214-36671233 None:intergenic 50.0%
TGGAAGACATCTTCGGAGCA+TGG + chr4.4:36671219-36671238 None:intergenic 50.0%
!! AGACTTGTTGAGTCAGGCTG+AGG - chr4.4:36671152-36671171 MS.gene057796:CDS 50.0%
CTTCGGAGCATGGAATGGTG+AGG + chr4.4:36671209-36671228 None:intergenic 55.0%
GGAATGGTGAGGCCACCCAT+TGG + chr4.4:36671198-36671217 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 36671006 36671269 36671006 ID=MS.gene057796
chr4.4 mRNA 36671006 36671269 36671006 ID=MS.gene057796.t1;Parent=MS.gene057796
chr4.4 exon 36671006 36671269 36671006 ID=MS.gene057796.t1.exon1;Parent=MS.gene057796.t1
chr4.4 CDS 36671006 36671269 36671006 ID=cds.MS.gene057796.t1;Parent=MS.gene057796.t1
Gene Sequence

>MS.gene057796

ATGGGTTTCCGTTTACATACTATTCTAAAGGGTTCAGTAAAATCAAAATCTATAGAAGTGAGAAAGGGCTATGTTGCAGTGTATGTTGGAGAGAAACAGAAGCGGTTTGTAGTTCCTGTGTCATACTTGAACCAACCTTCATTTCAAGACTTGTTGAGTCAGGCTGAGGAAGAGTTTGGATATGATCATCCAATGGGTGGCCTCACCATTCCATGCTCCGAAGATGTCTTCCAAAATATAACTTCTTGCTTGAATGGGATATGA

Protein sequence

>MS.gene057796.t1

MGFRLHTILKGSVKSKSIEVRKGYVAVYVGEKQKRFVVPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQNITSCLNGI