Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79517.t1 | XP_013454718.1 | 83.2 | 315 | 13 | 1 | 1 | 275 | 1 | 315 | 1.10E-146 | 529.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79517.t1 | Q945B6 | 46.6 | 311 | 115 | 4 | 8 | 272 | 13 | 318 | 5.1e-76 | 285.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79517.t1 | A0A072UG76 | 83.2 | 315 | 13 | 1 | 1 | 275 | 1 | 315 | 7.9e-147 | 529.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene79517 | 0.812401 | 4.32E-51 | -1.69E-46 |
| MS.gene05240 | MS.gene79517 | 0.808436 | 3.10E-50 | -1.69E-46 |
| MS.gene05244 | MS.gene79517 | 0.801934 | 7.12E-49 | -1.69E-46 |
| MS.gene052702 | MS.gene79517 | 0.800103 | 1.69E-48 | -1.69E-46 |
| MS.gene054277 | MS.gene79517 | 0.822148 | 2.77E-53 | -1.69E-46 |
| MS.gene054742 | MS.gene79517 | 0.828793 | 7.38E-55 | -1.69E-46 |
| MS.gene056590 | MS.gene79517 | 0.832791 | 7.73E-56 | -1.69E-46 |
| MS.gene056591 | MS.gene79517 | 0.830799 | 2.40E-55 | -1.69E-46 |
| MS.gene056688 | MS.gene79517 | 0.805029 | 1.63E-49 | -1.69E-46 |
| MS.gene056697 | MS.gene79517 | 0.838966 | 2.10E-57 | -1.69E-46 |
| MS.gene056748 | MS.gene79517 | 0.819559 | 1.09E-52 | -1.69E-46 |
| MS.gene056856 | MS.gene79517 | 0.813133 | 2.99E-51 | -1.69E-46 |
| MS.gene056920 | MS.gene79517 | 0.827872 | 1.23E-54 | -1.69E-46 |
| MS.gene057261 | MS.gene79517 | 0.83483 | 2.39E-56 | -1.69E-46 |
| MS.gene057820 | MS.gene79517 | 0.808377 | 3.19E-50 | -1.69E-46 |
| MS.gene058099 | MS.gene79517 | 0.801638 | 8.19E-49 | -1.69E-46 |
| MS.gene058381 | MS.gene79517 | 0.808394 | 3.16E-50 | -1.69E-46 |
| MS.gene05926 | MS.gene79517 | 0.830328 | 3.12E-55 | -1.69E-46 |
| MS.gene059315 | MS.gene79517 | 0.806159 | 9.42E-50 | -1.69E-46 |
| MS.gene059955 | MS.gene79517 | 0.81305 | 3.11E-51 | -1.69E-46 |
| MS.gene060087 | MS.gene79517 | 0.804075 | 2.57E-49 | -1.69E-46 |
| MS.gene060405 | MS.gene79517 | 0.833524 | 5.08E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79517.t1 | MTR_4g011690 | 83.175 | 315 | 13 | 1 | 1 | 275 | 1 | 315 | 0.0 | 532 |
| MS.gene79517.t1 | MTR_4g011720 | 72.063 | 315 | 47 | 2 | 1 | 275 | 1 | 314 | 2.79e-167 | 466 |
| MS.gene79517.t1 | MTR_4g011720 | 68.803 | 234 | 32 | 2 | 1 | 194 | 1 | 233 | 5.76e-110 | 318 |
| MS.gene79517.t1 | MTR_7g090520 | 32.602 | 319 | 168 | 7 | 1 | 275 | 1 | 316 | 4.01e-59 | 191 |
| MS.gene79517.t1 | MTR_3g108520 | 32.602 | 319 | 160 | 10 | 1 | 268 | 1 | 315 | 4.03e-48 | 162 |
| MS.gene79517.t1 | MTR_1g011600 | 32.423 | 293 | 146 | 8 | 1 | 243 | 1 | 291 | 1.50e-45 | 155 |
| MS.gene79517.t1 | MTR_4g021380 | 29.712 | 313 | 169 | 7 | 4 | 267 | 2 | 312 | 1.57e-42 | 148 |
| MS.gene79517.t1 | MTR_4g021360 | 29.968 | 317 | 169 | 9 | 1 | 268 | 1 | 313 | 2.42e-39 | 139 |
| MS.gene79517.t1 | MTR_6g035160 | 45.652 | 138 | 72 | 3 | 124 | 259 | 29 | 165 | 2.47e-35 | 125 |
| MS.gene79517.t1 | MTR_5g024940 | 30.657 | 274 | 158 | 9 | 17 | 267 | 9 | 273 | 1.44e-31 | 118 |
| MS.gene79517.t1 | MTR_8g030880 | 27.869 | 305 | 164 | 7 | 9 | 267 | 10 | 304 | 3.20e-26 | 105 |
| MS.gene79517.t1 | MTR_5g027230 | 26.812 | 276 | 155 | 6 | 32 | 266 | 22 | 291 | 3.07e-25 | 102 |
| MS.gene79517.t1 | MTR_5g025050 | 28.125 | 288 | 149 | 8 | 9 | 253 | 5 | 277 | 4.74e-25 | 101 |
| MS.gene79517.t1 | MTR_5g025090 | 25.000 | 300 | 172 | 8 | 9 | 271 | 5 | 288 | 1.60e-23 | 97.4 |
| MS.gene79517.t1 | MTR_5g032870 | 40.650 | 123 | 71 | 2 | 142 | 264 | 216 | 336 | 3.67e-22 | 94.4 |
| MS.gene79517.t1 | MTR_5g032880 | 29.373 | 303 | 163 | 9 | 9 | 264 | 376 | 674 | 7.61e-22 | 95.1 |
| MS.gene79517.t1 | MTR_5g032880 | 38.168 | 131 | 78 | 3 | 142 | 272 | 208 | 335 | 1.48e-20 | 91.7 |
| MS.gene79517.t1 | MTR_7g077670 | 25.155 | 322 | 183 | 10 | 3 | 275 | 5 | 317 | 1.85e-21 | 92.0 |
| MS.gene79517.t1 | MTR_7g102820 | 27.129 | 317 | 166 | 10 | 8 | 267 | 66 | 374 | 2.25e-21 | 92.8 |
| MS.gene79517.t1 | MTR_5g025060 | 27.626 | 257 | 165 | 8 | 9 | 253 | 6 | 253 | 2.64e-21 | 90.9 |
| MS.gene79517.t1 | MTR_1g070120 | 24.333 | 300 | 178 | 8 | 9 | 265 | 38 | 331 | 3.49e-21 | 91.7 |
| MS.gene79517.t1 | MTR_8g024120 | 24.333 | 300 | 176 | 7 | 5 | 260 | 38 | 330 | 1.11e-20 | 90.5 |
| MS.gene79517.t1 | MTR_0009s0050 | 38.211 | 123 | 73 | 3 | 142 | 263 | 38 | 158 | 6.68e-20 | 85.1 |
| MS.gene79517.t1 | MTR_4g087110 | 35.211 | 142 | 90 | 2 | 114 | 254 | 187 | 327 | 9.70e-20 | 87.8 |
| MS.gene79517.t1 | MTR_7g451860 | 27.547 | 265 | 149 | 8 | 8 | 232 | 40 | 301 | 1.84e-19 | 87.0 |
| MS.gene79517.t1 | MTR_7g047670 | 27.547 | 265 | 149 | 8 | 8 | 232 | 40 | 301 | 1.84e-19 | 87.0 |
| MS.gene79517.t1 | MTR_8g033380 | 31.250 | 160 | 104 | 3 | 113 | 268 | 206 | 363 | 2.17e-19 | 87.0 |
| MS.gene79517.t1 | MTR_0009s0050 | 38.211 | 123 | 73 | 3 | 142 | 263 | 120 | 240 | 3.36e-19 | 84.7 |
| MS.gene79517.t1 | MTR_0009s0050 | 38.211 | 123 | 73 | 3 | 142 | 263 | 120 | 240 | 4.20e-19 | 84.7 |
| MS.gene79517.t1 | MTR_5g005570 | 26.855 | 283 | 161 | 9 | 8 | 253 | 36 | 309 | 5.40e-19 | 85.5 |
| MS.gene79517.t1 | MTR_1g034140 | 31.915 | 141 | 90 | 3 | 126 | 265 | 191 | 326 | 5.69e-19 | 85.5 |
| MS.gene79517.t1 | MTR_0009s0050 | 38.211 | 123 | 73 | 3 | 142 | 263 | 218 | 338 | 9.52e-19 | 85.1 |
| MS.gene79517.t1 | MTR_0009s0050 | 38.211 | 123 | 73 | 3 | 142 | 263 | 218 | 338 | 1.16e-18 | 84.7 |
| MS.gene79517.t1 | MTR_1g062110 | 25.714 | 315 | 167 | 9 | 8 | 267 | 65 | 367 | 3.45e-18 | 83.6 |
| MS.gene79517.t1 | MTR_2g083030 | 25.862 | 290 | 166 | 8 | 3 | 253 | 31 | 310 | 3.63e-18 | 83.2 |
| MS.gene79517.t1 | MTR_1g070110 | 36.975 | 119 | 73 | 2 | 144 | 262 | 107 | 223 | 3.93e-18 | 81.6 |
| MS.gene79517.t1 | MTR_1g070135 | 31.429 | 140 | 94 | 2 | 126 | 265 | 194 | 331 | 5.10e-18 | 82.8 |
| MS.gene79517.t1 | MTR_3g092890 | 26.230 | 305 | 166 | 11 | 9 | 266 | 38 | 330 | 5.22e-18 | 82.8 |
| MS.gene79517.t1 | MTR_3g096500 | 25.152 | 330 | 175 | 11 | 8 | 275 | 65 | 384 | 5.46e-18 | 83.2 |
| MS.gene79517.t1 | MTR_8g093930 | 25.704 | 284 | 151 | 10 | 33 | 264 | 70 | 345 | 6.18e-18 | 82.8 |
| MS.gene79517.t1 | MTR_4g087090 | 27.431 | 288 | 152 | 7 | 9 | 242 | 30 | 314 | 1.08e-17 | 82.0 |
| MS.gene79517.t1 | MTR_3g117420 | 32.450 | 151 | 99 | 3 | 115 | 264 | 199 | 347 | 1.10e-17 | 82.0 |
| MS.gene79517.t1 | MTR_1g034120 | 31.690 | 142 | 95 | 2 | 114 | 254 | 189 | 329 | 1.42e-17 | 81.6 |
| MS.gene79517.t1 | MTR_7g062600 | 25.413 | 303 | 174 | 8 | 4 | 261 | 46 | 341 | 2.19e-17 | 81.3 |
| MS.gene79517.t1 | MTR_7g081710 | 24.204 | 314 | 166 | 9 | 9 | 267 | 49 | 345 | 3.01e-17 | 80.9 |
| MS.gene79517.t1 | MTR_6g464620 | 34.559 | 136 | 84 | 3 | 126 | 258 | 230 | 363 | 3.98e-17 | 80.9 |
| MS.gene79517.t1 | MTR_1g070080 | 35.115 | 131 | 82 | 3 | 135 | 265 | 204 | 331 | 6.17e-17 | 79.7 |
| MS.gene79517.t1 | MTR_5g082750 | 29.110 | 292 | 150 | 12 | 4 | 245 | 44 | 328 | 7.03e-17 | 79.7 |
| MS.gene79517.t1 | MTR_4g087140 | 32.639 | 144 | 95 | 2 | 112 | 254 | 186 | 328 | 7.21e-17 | 79.7 |
| MS.gene79517.t1 | MTR_8g074050 | 32.911 | 158 | 101 | 5 | 115 | 269 | 199 | 354 | 7.68e-17 | 79.7 |
| MS.gene79517.t1 | MTR_1g070085 | 23.432 | 303 | 178 | 7 | 9 | 265 | 37 | 331 | 9.62e-17 | 79.3 |
| MS.gene79517.t1 | MTR_1g070085 | 23.432 | 303 | 178 | 7 | 9 | 265 | 37 | 331 | 9.62e-17 | 79.3 |
| MS.gene79517.t1 | MTR_1g102070 | 30.675 | 163 | 107 | 3 | 115 | 273 | 214 | 374 | 1.11e-16 | 79.3 |
| MS.gene79517.t1 | MTR_1g034060 | 30.986 | 142 | 96 | 2 | 114 | 254 | 189 | 329 | 1.11e-16 | 79.3 |
| MS.gene79517.t1 | MTR_1g086550 | 30.435 | 138 | 92 | 2 | 136 | 270 | 197 | 333 | 1.30e-16 | 79.0 |
| MS.gene79517.t1 | MTR_1g070085 | 32.258 | 124 | 82 | 2 | 142 | 265 | 132 | 253 | 1.66e-16 | 77.8 |
| MS.gene79517.t1 | MTR_1g070100 | 27.815 | 151 | 107 | 2 | 115 | 265 | 101 | 249 | 1.75e-16 | 77.4 |
| MS.gene79517.t1 | MTR_8g074070 | 32.278 | 158 | 102 | 4 | 115 | 269 | 180 | 335 | 3.96e-16 | 77.4 |
| MS.gene79517.t1 | MTR_7g062570 | 34.615 | 130 | 82 | 3 | 127 | 255 | 211 | 338 | 4.04e-16 | 77.8 |
| MS.gene79517.t1 | MTR_1g081840 | 35.652 | 115 | 72 | 2 | 126 | 240 | 219 | 331 | 4.17e-16 | 77.8 |
| MS.gene79517.t1 | MTR_8g074070 | 32.278 | 158 | 102 | 4 | 115 | 269 | 199 | 354 | 4.68e-16 | 77.4 |
| MS.gene79517.t1 | MTR_2g437380 | 26.733 | 303 | 168 | 10 | 9 | 263 | 50 | 346 | 5.73e-16 | 77.4 |
| MS.gene79517.t1 | MTR_4g087100 | 30.000 | 140 | 96 | 2 | 116 | 254 | 189 | 327 | 9.74e-16 | 76.6 |
| MS.gene79517.t1 | MTR_4g074130 | 25.843 | 267 | 156 | 9 | 8 | 235 | 39 | 302 | 1.02e-15 | 76.3 |
| MS.gene79517.t1 | MTR_3g043900 | 26.712 | 292 | 158 | 9 | 9 | 257 | 56 | 334 | 1.11e-15 | 76.3 |
| MS.gene79517.t1 | MTR_7g062580 | 33.094 | 139 | 90 | 3 | 127 | 264 | 211 | 347 | 1.22e-15 | 76.3 |
| MS.gene79517.t1 | MTR_4g123020 | 33.065 | 124 | 82 | 1 | 136 | 259 | 185 | 307 | 1.32e-15 | 75.9 |
| MS.gene79517.t1 | MTR_5g048570 | 35.772 | 123 | 76 | 3 | 142 | 263 | 216 | 336 | 1.40e-15 | 75.9 |
| MS.gene79517.t1 | MTR_5g055680 | 35.772 | 123 | 76 | 3 | 142 | 263 | 218 | 338 | 1.77e-15 | 75.9 |
| MS.gene79517.t1 | MTR_2g072890 | 26.316 | 304 | 175 | 11 | 8 | 267 | 51 | 349 | 1.93e-15 | 75.5 |
| MS.gene79517.t1 | MTR_0009s0400 | 36.364 | 121 | 74 | 3 | 142 | 261 | 14 | 132 | 2.12e-15 | 72.0 |
| MS.gene79517.t1 | MTR_3g088745 | 30.882 | 136 | 89 | 3 | 126 | 258 | 202 | 335 | 2.31e-15 | 75.5 |
| MS.gene79517.t1 | MTR_2g437380 | 37.097 | 124 | 74 | 3 | 142 | 263 | 131 | 252 | 3.75e-15 | 73.9 |
| MS.gene79517.t1 | MTR_5g048550 | 32.099 | 162 | 98 | 6 | 109 | 261 | 178 | 336 | 4.77e-15 | 74.3 |
| MS.gene79517.t1 | MTR_0056s0160 | 37.190 | 121 | 73 | 3 | 142 | 261 | 103 | 221 | 5.55e-15 | 72.8 |
| MS.gene79517.t1 | MTR_8g093980 | 25.490 | 306 | 172 | 9 | 8 | 264 | 58 | 356 | 1.03e-14 | 73.6 |
| MS.gene79517.t1 | MTR_6g015950 | 26.241 | 282 | 157 | 7 | 32 | 266 | 55 | 332 | 1.11e-14 | 73.2 |
| MS.gene79517.t1 | MTR_2g033270 | 29.851 | 134 | 92 | 2 | 141 | 273 | 186 | 318 | 1.30e-14 | 72.8 |
| MS.gene79517.t1 | MTR_5g055900 | 34.959 | 123 | 77 | 3 | 142 | 263 | 218 | 338 | 1.58e-14 | 73.2 |
| MS.gene79517.t1 | MTR_3g070860 | 26.855 | 283 | 158 | 9 | 9 | 245 | 50 | 329 | 1.61e-14 | 73.2 |
| MS.gene79517.t1 | MTR_5g059130 | 25.862 | 290 | 151 | 10 | 8 | 246 | 43 | 319 | 1.84e-14 | 72.8 |
| MS.gene79517.t1 | MTR_7g063730 | 26.498 | 317 | 175 | 13 | 8 | 275 | 63 | 370 | 1.85e-14 | 72.8 |
| MS.gene79517.t1 | MTR_8g461330 | 32.500 | 120 | 80 | 1 | 142 | 261 | 203 | 321 | 2.06e-14 | 72.4 |
| MS.gene79517.t1 | MTR_0328s0030 | 35.075 | 134 | 80 | 4 | 142 | 270 | 216 | 347 | 2.07e-14 | 72.8 |
| MS.gene79517.t1 | MTR_7g068650 | 29.010 | 293 | 156 | 11 | 9 | 253 | 54 | 342 | 3.13e-14 | 72.0 |
| MS.gene79517.t1 | MTR_3g063180 | 32.836 | 134 | 82 | 4 | 142 | 269 | 219 | 350 | 3.77e-14 | 72.0 |
| MS.gene79517.t1 | MTR_4g015790 | 36.620 | 142 | 85 | 5 | 121 | 260 | 219 | 357 | 4.07e-14 | 72.0 |
| MS.gene79517.t1 | MTR_0009s0480 | 35.537 | 121 | 75 | 3 | 142 | 261 | 217 | 335 | 5.23e-14 | 71.6 |
| MS.gene79517.t1 | MTR_5g055800 | 25.000 | 304 | 176 | 10 | 2 | 261 | 40 | 335 | 5.61e-14 | 71.2 |
| MS.gene79517.t1 | MTR_5g048850 | 35.772 | 123 | 76 | 3 | 142 | 263 | 218 | 338 | 5.67e-14 | 71.2 |
| MS.gene79517.t1 | MTR_7g062550 | 25.253 | 297 | 169 | 10 | 4 | 255 | 55 | 343 | 1.10e-13 | 70.5 |
| MS.gene79517.t1 | MTR_8g064200 | 24.262 | 305 | 179 | 10 | 2 | 261 | 50 | 347 | 1.14e-13 | 70.5 |
| MS.gene79517.t1 | MTR_8g064200 | 24.262 | 305 | 179 | 10 | 2 | 261 | 45 | 342 | 1.20e-13 | 70.5 |
| MS.gene79517.t1 | MTR_4g087130 | 33.333 | 141 | 92 | 2 | 114 | 253 | 186 | 325 | 1.56e-13 | 70.1 |
| MS.gene79517.t1 | MTR_1g033810 | 25.763 | 295 | 168 | 9 | 4 | 253 | 42 | 330 | 1.82e-13 | 70.1 |
| MS.gene79517.t1 | MTR_4g087120 | 31.690 | 142 | 95 | 2 | 114 | 254 | 187 | 327 | 1.88e-13 | 69.7 |
| MS.gene79517.t1 | MTR_4g116010 | 32.520 | 123 | 80 | 3 | 142 | 263 | 220 | 340 | 2.41e-13 | 69.7 |
| MS.gene79517.t1 | MTR_3g117485 | 32.231 | 121 | 79 | 3 | 127 | 246 | 139 | 257 | 2.46e-13 | 68.9 |
| MS.gene79517.t1 | MTR_3g117485 | 32.231 | 121 | 79 | 3 | 127 | 246 | 211 | 329 | 4.37e-13 | 68.9 |
| MS.gene79517.t1 | MTR_3g045230 | 38.462 | 117 | 65 | 4 | 143 | 257 | 224 | 335 | 6.17e-13 | 68.2 |
| MS.gene79517.t1 | MTR_8g062600 | 24.116 | 311 | 183 | 13 | 9 | 272 | 67 | 371 | 6.48e-13 | 68.6 |
| MS.gene79517.t1 | MTR_3g058610 | 25.597 | 293 | 168 | 10 | 8 | 255 | 38 | 325 | 1.23e-12 | 67.4 |
| MS.gene79517.t1 | MTR_2g102570 | 33.628 | 113 | 74 | 1 | 142 | 254 | 223 | 334 | 1.58e-12 | 67.4 |
| MS.gene79517.t1 | MTR_3g091350 | 28.994 | 169 | 105 | 4 | 96 | 264 | 196 | 349 | 1.61e-12 | 67.0 |
| MS.gene79517.t1 | MTR_4g096840 | 24.186 | 215 | 151 | 6 | 61 | 269 | 121 | 329 | 1.98e-12 | 66.6 |
| MS.gene79517.t1 | MTR_2g019370 | 26.190 | 168 | 118 | 5 | 96 | 261 | 158 | 321 | 2.16e-12 | 66.6 |
| MS.gene79517.t1 | MTR_5g022020 | 26.780 | 295 | 162 | 11 | 8 | 255 | 38 | 325 | 2.23e-12 | 66.6 |
| MS.gene79517.t1 | MTR_5g048740 | 24.342 | 304 | 178 | 9 | 3 | 261 | 39 | 335 | 3.19e-12 | 66.2 |
| MS.gene79517.t1 | MTR_4g093840 | 26.316 | 171 | 114 | 5 | 86 | 255 | 189 | 348 | 4.32e-12 | 65.9 |
| MS.gene79517.t1 | MTR_8g102600 | 26.404 | 178 | 109 | 8 | 102 | 272 | 162 | 324 | 1.72e-11 | 63.9 |
| MS.gene79517.t1 | MTR_8g102600 | 26.404 | 178 | 109 | 8 | 102 | 272 | 112 | 274 | 1.77e-11 | 63.5 |
| MS.gene79517.t1 | MTR_2g068840 | 32.520 | 123 | 76 | 3 | 142 | 258 | 225 | 346 | 1.78e-11 | 63.9 |
| MS.gene79517.t1 | MTR_1g032220 | 33.333 | 129 | 81 | 5 | 135 | 261 | 235 | 360 | 2.55e-11 | 63.5 |
| MS.gene79517.t1 | MTR_6g088665 | 29.286 | 140 | 91 | 4 | 127 | 260 | 190 | 327 | 2.59e-11 | 63.5 |
| MS.gene79517.t1 | MTR_6g088665 | 28.188 | 149 | 99 | 4 | 118 | 260 | 182 | 328 | 2.63e-11 | 63.5 |
| MS.gene79517.t1 | MTR_3g091360 | 35.398 | 113 | 70 | 3 | 142 | 254 | 226 | 335 | 3.01e-11 | 63.5 |
| MS.gene79517.t1 | MTR_7g029655 | 32.800 | 125 | 70 | 5 | 142 | 257 | 235 | 354 | 5.72e-11 | 62.8 |
| MS.gene79517.t1 | MTR_2g070870 | 34.940 | 83 | 53 | 1 | 142 | 224 | 196 | 277 | 7.49e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79517.t1 | AT1G52820 | 57.994 | 319 | 88 | 4 | 1 | 275 | 1 | 317 | 9.81e-134 | 381 |
| MS.gene79517.t1 | AT4G03070 | 46.178 | 314 | 117 | 4 | 8 | 274 | 13 | 321 | 5.09e-97 | 288 |
| MS.gene79517.t1 | AT1G52820 | 52.941 | 238 | 66 | 4 | 1 | 194 | 1 | 236 | 1.53e-82 | 249 |
| MS.gene79517.t1 | AT1G28030 | 41.801 | 311 | 136 | 6 | 9 | 275 | 13 | 322 | 9.20e-78 | 239 |
| MS.gene79517.t1 | AT1G52790 | 38.907 | 311 | 147 | 3 | 6 | 275 | 2 | 310 | 1.12e-75 | 233 |
| MS.gene79517.t1 | AT1G52800 | 38.585 | 311 | 147 | 5 | 6 | 275 | 7 | 314 | 2.57e-71 | 222 |
| MS.gene79517.t1 | AT1G52810 | 42.657 | 286 | 139 | 4 | 8 | 275 | 11 | 289 | 1.14e-69 | 217 |
| MS.gene79517.t1 | AT1G80320 | 31.902 | 326 | 163 | 7 | 1 | 275 | 1 | 318 | 1.02e-48 | 164 |
| MS.gene79517.t1 | AT1G15540 | 32.209 | 326 | 163 | 8 | 1 | 275 | 4 | 322 | 5.80e-42 | 147 |
| MS.gene79517.t1 | AT1G15540 | 32.209 | 326 | 163 | 8 | 1 | 275 | 1 | 319 | 5.89e-42 | 146 |
| MS.gene79517.t1 | AT1G15540 | 32.209 | 326 | 163 | 8 | 1 | 275 | 1 | 319 | 5.89e-42 | 146 |
| MS.gene79517.t1 | AT1G15540 | 32.209 | 326 | 163 | 8 | 1 | 275 | 8 | 326 | 7.46e-42 | 146 |
| MS.gene79517.t1 | AT4G03050 | 46.715 | 137 | 71 | 2 | 140 | 275 | 272 | 407 | 3.87e-41 | 146 |
| MS.gene79517.t1 | AT4G03050 | 33.721 | 172 | 70 | 3 | 1 | 132 | 1 | 168 | 1.09e-22 | 96.7 |
| MS.gene79517.t1 | AT4G03050 | 46.715 | 137 | 71 | 2 | 140 | 275 | 272 | 407 | 3.87e-41 | 146 |
| MS.gene79517.t1 | AT4G03050 | 33.721 | 172 | 70 | 3 | 1 | 132 | 1 | 168 | 1.09e-22 | 96.7 |
| MS.gene79517.t1 | AT4G23340 | 35.294 | 136 | 84 | 3 | 143 | 275 | 64 | 198 | 6.07e-21 | 88.6 |
| MS.gene79517.t1 | AT4G23340 | 35.294 | 136 | 84 | 3 | 143 | 275 | 182 | 316 | 8.49e-20 | 87.8 |
| MS.gene79517.t1 | AT4G10490 | 26.403 | 303 | 156 | 14 | 9 | 258 | 42 | 330 | 1.54e-19 | 87.4 |
| MS.gene79517.t1 | AT2G36690 | 25.890 | 309 | 169 | 9 | 8 | 267 | 60 | 357 | 5.24e-19 | 85.9 |
| MS.gene79517.t1 | AT2G36690 | 25.890 | 309 | 169 | 9 | 8 | 267 | 60 | 357 | 5.24e-19 | 85.9 |
| MS.gene79517.t1 | AT1G50960 | 30.350 | 257 | 135 | 9 | 8 | 224 | 39 | 291 | 7.55e-19 | 85.1 |
| MS.gene79517.t1 | AT1G14130 | 26.236 | 263 | 153 | 6 | 27 | 250 | 20 | 280 | 1.24e-18 | 84.3 |
| MS.gene79517.t1 | AT1G78550 | 36.364 | 121 | 74 | 3 | 142 | 261 | 148 | 266 | 1.45e-17 | 80.9 |
| MS.gene79517.t1 | AT1G78550 | 36.364 | 121 | 74 | 3 | 142 | 261 | 226 | 344 | 2.78e-17 | 80.9 |
| MS.gene79517.t1 | AT3G19010 | 24.907 | 269 | 167 | 8 | 8 | 248 | 27 | 288 | 3.48e-17 | 80.5 |
| MS.gene79517.t1 | AT1G14120 | 26.056 | 284 | 162 | 5 | 3 | 247 | 2 | 276 | 4.27e-17 | 80.1 |
| MS.gene79517.t1 | AT1G14120 | 26.056 | 284 | 162 | 5 | 3 | 247 | 2 | 276 | 4.27e-17 | 80.1 |
| MS.gene79517.t1 | AT1G14120 | 26.056 | 284 | 162 | 5 | 3 | 247 | 2 | 276 | 4.27e-17 | 80.1 |
| MS.gene79517.t1 | AT5G07200 | 37.008 | 127 | 74 | 4 | 114 | 238 | 213 | 335 | 8.81e-17 | 79.7 |
| MS.gene79517.t1 | AT5G51810 | 29.747 | 158 | 105 | 3 | 115 | 268 | 213 | 368 | 2.13e-16 | 78.6 |
| MS.gene79517.t1 | AT4G21200 | 34.375 | 128 | 82 | 2 | 105 | 232 | 173 | 298 | 3.11e-16 | 77.8 |
| MS.gene79517.t1 | AT1G44090 | 29.775 | 178 | 109 | 6 | 97 | 272 | 209 | 372 | 2.38e-15 | 75.5 |
| MS.gene79517.t1 | AT4G10500 | 23.906 | 297 | 172 | 10 | 8 | 258 | 43 | 331 | 3.35e-15 | 75.1 |
| MS.gene79517.t1 | AT5G51310 | 34.375 | 128 | 75 | 4 | 143 | 263 | 182 | 307 | 6.12e-15 | 73.9 |
| MS.gene79517.t1 | AT5G20550 | 35.200 | 125 | 77 | 4 | 142 | 264 | 220 | 342 | 6.56e-15 | 73.9 |
| MS.gene79517.t1 | AT5G05600 | 26.129 | 310 | 177 | 10 | 3 | 263 | 53 | 359 | 9.85e-15 | 73.9 |
| MS.gene79517.t1 | AT1G47990 | 29.630 | 135 | 93 | 2 | 140 | 273 | 186 | 319 | 1.25e-14 | 73.2 |
| MS.gene79517.t1 | AT4G25420 | 32.258 | 124 | 82 | 2 | 115 | 238 | 215 | 336 | 1.25e-14 | 73.6 |
| MS.gene79517.t1 | AT3G19010 | 31.111 | 135 | 87 | 3 | 115 | 248 | 189 | 318 | 1.63e-14 | 72.8 |
| MS.gene79517.t1 | AT3G19010 | 31.111 | 135 | 87 | 3 | 115 | 248 | 189 | 318 | 1.63e-14 | 72.8 |
| MS.gene79517.t1 | AT1G02400 | 31.667 | 120 | 80 | 2 | 141 | 259 | 197 | 315 | 2.57e-14 | 72.4 |
| MS.gene79517.t1 | AT1G78440 | 28.324 | 173 | 108 | 4 | 96 | 261 | 147 | 310 | 2.70e-14 | 72.0 |
| MS.gene79517.t1 | AT4G16765 | 31.875 | 160 | 93 | 5 | 102 | 255 | 88 | 237 | 3.05e-14 | 70.9 |
| MS.gene79517.t1 | AT4G16765 | 31.875 | 160 | 93 | 5 | 102 | 255 | 88 | 237 | 3.05e-14 | 70.9 |
| MS.gene79517.t1 | AT4G16765 | 31.875 | 160 | 93 | 5 | 102 | 255 | 88 | 237 | 3.05e-14 | 70.9 |
| MS.gene79517.t1 | AT3G13610 | 36.975 | 119 | 71 | 4 | 142 | 258 | 230 | 346 | 3.94e-14 | 72.0 |
| MS.gene79517.t1 | AT1G30040 | 26.627 | 169 | 112 | 3 | 96 | 261 | 161 | 320 | 7.43e-14 | 70.9 |
| MS.gene79517.t1 | AT1G15550 | 25.333 | 300 | 162 | 8 | 9 | 259 | 57 | 343 | 3.27e-13 | 69.3 |
| MS.gene79517.t1 | AT2G34555 | 27.397 | 146 | 102 | 3 | 120 | 262 | 173 | 317 | 6.34e-13 | 68.2 |
| MS.gene79517.t1 | AT1G55290 | 32.203 | 118 | 78 | 2 | 142 | 258 | 230 | 346 | 7.53e-13 | 68.2 |
| MS.gene79517.t1 | AT1G60980 | 29.299 | 157 | 108 | 3 | 113 | 268 | 213 | 367 | 8.13e-13 | 68.2 |
| MS.gene79517.t1 | AT5G54000 | 33.553 | 152 | 96 | 4 | 115 | 264 | 114 | 262 | 9.72e-13 | 67.0 |
| MS.gene79517.t1 | AT1G49390 | 33.600 | 125 | 78 | 4 | 142 | 264 | 141 | 262 | 1.56e-12 | 66.6 |
| MS.gene79517.t1 | AT1G80340 | 32.000 | 125 | 81 | 2 | 142 | 266 | 220 | 340 | 1.61e-12 | 67.0 |
| MS.gene79517.t1 | AT5G54000 | 33.553 | 152 | 96 | 4 | 115 | 264 | 194 | 342 | 1.62e-12 | 67.0 |
| MS.gene79517.t1 | AT4G16765 | 35.897 | 117 | 69 | 3 | 143 | 255 | 77 | 191 | 2.98e-12 | 64.7 |
| MS.gene79517.t1 | AT1G49390 | 33.600 | 125 | 78 | 4 | 142 | 264 | 220 | 341 | 3.04e-12 | 66.2 |
| MS.gene79517.t1 | AT2G44800 | 23.151 | 311 | 188 | 10 | 1 | 267 | 45 | 348 | 3.18e-12 | 66.2 |
| MS.gene79517.t1 | AT2G38240 | 25.914 | 301 | 162 | 11 | 3 | 253 | 42 | 331 | 4.31e-12 | 65.9 |
| MS.gene79517.t1 | AT5G43935 | 24.399 | 291 | 160 | 11 | 6 | 258 | 16 | 284 | 4.79e-12 | 65.5 |
| MS.gene79517.t1 | AT1G80330 | 31.356 | 118 | 79 | 2 | 142 | 258 | 222 | 338 | 4.91e-12 | 65.9 |
| MS.gene79517.t1 | AT5G63595 | 24.167 | 240 | 146 | 7 | 5 | 218 | 21 | 250 | 6.46e-12 | 64.7 |
| MS.gene79517.t1 | AT3G19000 | 32.353 | 136 | 90 | 2 | 120 | 254 | 195 | 329 | 7.82e-12 | 65.1 |
| MS.gene79517.t1 | AT5G20400 | 32.258 | 124 | 81 | 2 | 142 | 264 | 220 | 341 | 8.45e-12 | 65.1 |
| MS.gene79517.t1 | AT5G59540 | 24.172 | 302 | 175 | 11 | 8 | 262 | 60 | 354 | 1.52e-11 | 64.3 |
| MS.gene79517.t1 | AT4G21690 | 29.577 | 142 | 94 | 3 | 121 | 259 | 200 | 338 | 1.57e-11 | 64.3 |
| MS.gene79517.t1 | AT3G11180 | 35.099 | 151 | 92 | 6 | 127 | 275 | 253 | 399 | 1.97e-11 | 64.3 |
| MS.gene79517.t1 | AT4G22880 | 30.323 | 155 | 100 | 5 | 116 | 265 | 198 | 349 | 3.54e-11 | 63.2 |
| MS.gene79517.t1 | AT4G22880 | 30.323 | 155 | 100 | 5 | 116 | 265 | 198 | 349 | 3.54e-11 | 63.2 |
| MS.gene79517.t1 | AT4G22880 | 30.323 | 155 | 100 | 5 | 116 | 265 | 198 | 349 | 3.54e-11 | 63.2 |
| MS.gene79517.t1 | AT1G06620 | 31.126 | 151 | 90 | 6 | 118 | 260 | 208 | 352 | 4.27e-11 | 63.2 |
| MS.gene79517.t1 | AT2G19590 | 30.178 | 169 | 102 | 5 | 94 | 261 | 122 | 275 | 4.80e-11 | 62.4 |
| MS.gene79517.t1 | AT2G19590 | 30.994 | 171 | 98 | 7 | 94 | 261 | 137 | 290 | 5.36e-11 | 62.4 |
| MS.gene79517.t1 | AT3G11180 | 36.029 | 136 | 82 | 5 | 127 | 260 | 253 | 385 | 5.96e-11 | 62.8 |
Find 68 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAACCCTCCACTTGATTT+TGG | 0.172318 | 4.2:+88684173 | None:intergenic |
| CATAACTCGGAGAAGATAAT+TGG | 0.235118 | 4.2:+88684276 | None:intergenic |
| CTCTTCTATTGAAGCAAATA+TGG | 0.247910 | 4.2:+88684905 | None:intergenic |
| CAAACAAGTGGCACAAAATT+AGG | 0.254155 | 4.2:-88684238 | MS.gene79517:CDS |
| TTTATAATGTACCCTTCTTT+GGG | 0.274338 | 4.2:+88683746 | None:intergenic |
| AAGTATTATTACACTGAAAA+AGG | 0.296469 | 4.2:-88683653 | MS.gene79517:CDS |
| AGGAACACCCTTTGCTCTTT+AGG | 0.302565 | 4.2:-88683700 | MS.gene79517:CDS |
| TATCTCCCAATTGGGACCTT+TGG | 0.309151 | 4.2:+88685013 | None:intergenic |
| TTATGACCAAAGATGGAAAA+TGG | 0.328291 | 4.2:-88684147 | MS.gene79517:CDS |
| AGCTACAAGCCTTCTTCTTT+AGG | 0.339219 | 4.2:-88684121 | MS.gene79517:CDS |
| AGGTTATTGAAGTCAATTAT+TGG | 0.351381 | 4.2:+88685047 | None:intergenic |
| AAATCAAGTGGAGGGTTTAG+AGG | 0.368484 | 4.2:-88684170 | MS.gene79517:CDS |
| AAGTCAATTATTGGAAGCTT+TGG | 0.372595 | 4.2:+88685056 | None:intergenic |
| GGCTGCATTCGCCGTTTCAT+CGG | 0.372856 | 4.2:-88683820 | MS.gene79517:CDS |
| GGACTTCACTATCTCCCAAT+TGG | 0.386844 | 4.2:+88685004 | None:intergenic |
| TCCTCATCCACCAGCTCCTC+AGG | 0.394498 | 4.2:+88683719 | None:intergenic |
| TGAGTAGCTTGGTTTGTAAA+GGG | 0.399695 | 4.2:+88684871 | None:intergenic |
| TGGAAGCCAAAGGTCCCAAT+TGG | 0.409261 | 4.2:-88685019 | MS.gene79517:CDS |
| TTTAGGTGTTGAAAAGTACT+TGG | 0.418069 | 4.2:-88684317 | MS.gene79517:intron |
| TACAAGGCACTAGTAGAGTA+TGG | 0.427395 | 4.2:-88684975 | MS.gene79517:CDS |
| CTACTAGTGCCTTGTAGACT+TGG | 0.427530 | 4.2:+88684982 | None:intergenic |
| AAAGTGGAACCATAGGATAT+TGG | 0.429700 | 4.2:+88684814 | None:intergenic |
| TCCTGAGGAGCTGGTGGATG+AGG | 0.442309 | 4.2:-88683720 | MS.gene79517:CDS |
| TTAGAGGTTATGACCAAAGA+TGG | 0.443286 | 4.2:-88684154 | MS.gene79517:CDS |
| TTGAGTAGCTTGGTTTGTAA+AGG | 0.444697 | 4.2:+88684870 | None:intergenic |
| GCATAGCAAATTGATCCCTT+TGG | 0.445803 | 4.2:+88683630 | None:intergenic |
| AGAAATTCAACATGGTCATA+AGG | 0.455564 | 4.2:+88683677 | None:intergenic |
| AATGAGGCAAGATATTCAAC+AGG | 0.456964 | 4.2:-88683782 | MS.gene79517:CDS |
| GCTGCATTCGCCGTTTCATC+GGG | 0.461406 | 4.2:-88683819 | MS.gene79517:CDS |
| CTCATCATCACCCGATGAAA+CGG | 0.468077 | 4.2:+88683809 | None:intergenic |
| CTTAGACACATTGAGTAGCT+TGG | 0.469557 | 4.2:+88684860 | None:intergenic |
| GACTTCACTATCTCCCAATT+GGG | 0.479300 | 4.2:+88685005 | None:intergenic |
| ATGGCTTTGCGAAGGTCTAA+AGG | 0.489454 | 4.2:+88684924 | None:intergenic |
| TATAAAAGCTCCTGAGGAGC+TGG | 0.492315 | 4.2:-88683729 | MS.gene79517:CDS |
| AAGCCTTATCATGGTTATGT+TGG | 0.495147 | 4.2:-88684837 | MS.gene79517:CDS |
| GGCCTTTGTATTTCATAACT+CGG | 0.505784 | 4.2:+88684263 | None:intergenic |
| TTATGTTGGCCAATATCCTA+TGG | 0.513696 | 4.2:-88684823 | MS.gene79517:CDS |
| GACCTTTGGCTTCCAAGTTG+AGG | 0.513817 | 4.2:+88685027 | None:intergenic |
| TGGCCAACATAACCATGATA+AGG | 0.515439 | 4.2:+88684834 | None:intergenic |
| TTGTTCTCTATCCCCAAAGA+AGG | 0.517620 | 4.2:-88683758 | MS.gene79517:CDS |
| TGACTTCAATAACCTCAACT+TGG | 0.518399 | 4.2:-88685039 | MS.gene79517:CDS |
| GGAAGCCAAAGGTCCCAATT+GGG | 0.524708 | 4.2:-88685018 | MS.gene79517:CDS |
| CATAAGGCCTAAAGAGCAAA+GGG | 0.533538 | 4.2:+88683693 | None:intergenic |
| TTTGCTATGCACACTTATTG+TGG | 0.535358 | 4.2:-88683617 | MS.gene79517:CDS |
| GTGTCTAAGAAGCCTTATCA+TGG | 0.546828 | 4.2:-88684846 | MS.gene79517:CDS |
| ACAAAACTGCCTAAAGAAGA+AGG | 0.550044 | 4.2:+88684112 | None:intergenic |
| TGCAGGCATGGTCAAACGGA+AGG | 0.550290 | 4.2:-88683841 | MS.gene79517:intron |
| AAAAGCTCCTGAGGAGCTGG+TGG | 0.553359 | 4.2:-88683726 | MS.gene79517:CDS |
| AGTGAAGTCCCAAGTCTACA+AGG | 0.560285 | 4.2:-88684991 | MS.gene79517:CDS |
| TTGTACCAAAATCAAGTGGA+GGG | 0.578480 | 4.2:-88684178 | MS.gene79517:CDS |
| AGGTGTTGAAAAGTACTTGG+AGG | 0.581664 | 4.2:-88684314 | MS.gene79517:CDS |
| TACTAGTGCCTTGTAGACTT+GGG | 0.582523 | 4.2:+88684983 | None:intergenic |
| TTTCATCGGGTGATGATGAG+TGG | 0.601192 | 4.2:-88683806 | MS.gene79517:CDS |
| TCATAAGGCCTAAAGAGCAA+AGG | 0.602630 | 4.2:+88683692 | None:intergenic |
| CTCCGAGTTATGAAATACAA+AGG | 0.607802 | 4.2:-88684265 | MS.gene79517:CDS |
| TTATAATGTACCCTTCTTTG+GGG | 0.608444 | 4.2:+88683747 | None:intergenic |
| GTACATTATAAAAGCTCCTG+AGG | 0.610724 | 4.2:-88683735 | MS.gene79517:CDS |
| CATATTGTACCAAAATCAAG+TGG | 0.618110 | 4.2:-88684182 | MS.gene79517:CDS |
| TACAAAGGCCCTCAAACAAG+TGG | 0.618602 | 4.2:-88684250 | MS.gene79517:CDS |
| ATTGTACCAAAATCAAGTGG+AGG | 0.620577 | 4.2:-88684179 | MS.gene79517:CDS |
| GGTGATGATGAGTGGAAATG+AGG | 0.625943 | 4.2:-88683798 | MS.gene79517:CDS |
| AAGCAAATATGGCTTTGCGA+AGG | 0.626163 | 4.2:+88684916 | None:intergenic |
| AACCTCAACTTGGAAGCCAA+AGG | 0.627785 | 4.2:-88685029 | MS.gene79517:CDS |
| AATTATTGGAAGCTTTGGAG+TGG | 0.639485 | 4.2:+88685061 | None:intergenic |
| TCTTGTCACTATGTGTGCTG+AGG | 0.642869 | 4.2:+88684215 | None:intergenic |
| TGTTCTCTATCCCCAAAGAA+GGG | 0.657730 | 4.2:-88683757 | MS.gene79517:CDS |
| AATACTTGAGAAATTCAACA+TGG | 0.726391 | 4.2:+88683669 | None:intergenic |
| ATGAGGCAAGATATTCAACA+GGG | 0.749856 | 4.2:-88683781 | MS.gene79517:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAACAAAATAATAAG+GGG | + | chr4.2:88684269-88684288 | None:intergenic | 10.0% |
| !!! | TTAATAATTAGTTTTCGATA+AGG | + | chr4.2:88684642-88684661 | None:intergenic | 15.0% |
| !! | AAGTATTATTACACTGAAAA+AGG | - | chr4.2:88685031-88685050 | MS.gene79517:CDS | 20.0% |
| !! | TATCAAATACTTTGATATCT+CGG | + | chr4.2:88684737-88684756 | None:intergenic | 20.0% |
| !!! | AATTATTAGGAAGATGATTT+TGG | - | chr4.2:88684340-88684359 | MS.gene79517:intron | 20.0% |
| !!! | ATCAAAACAAGTAACTTTTT+AGG | + | chr4.2:88683990-88684009 | None:intergenic | 20.0% |
| !!! | TTTTTAGGTACCTAAAATTT+TGG | + | chr4.2:88683975-88683994 | None:intergenic | 20.0% |
| ! | AAGAGTTGGATCAAATTATT+AGG | - | chr4.2:88684327-88684346 | MS.gene79517:intron | 25.0% |
| ! | AATACTTGAGAAATTCAACA+TGG | + | chr4.2:88685018-88685037 | None:intergenic | 25.0% |
| ! | AATTTGATCCCTACAATTAT+AGG | - | chr4.2:88684065-88684084 | MS.gene79517:intron | 25.0% |
| ! | AGGTTATTGAAGTCAATTAT+TGG | + | chr4.2:88683640-88683659 | None:intergenic | 25.0% |
| ! | ATCAAATACTTTGATATCTC+GGG | + | chr4.2:88684736-88684755 | None:intergenic | 25.0% |
| ! | ATTTGATCCCTACAATTATA+GGG | - | chr4.2:88684066-88684085 | MS.gene79517:intron | 25.0% |
| ! | TTTATAATGTACCCTTCTTT+GGG | + | chr4.2:88684941-88684960 | None:intergenic | 25.0% |
| !! | TATCAAAGTATTTGATATCG+TGG | - | chr4.2:88684740-88684759 | MS.gene79517:intron | 25.0% |
| !! | TTTTATAATGTACCCTTCTT+TGG | + | chr4.2:88684942-88684961 | None:intergenic | 25.0% |
| !!! | AATTAGTTTTCGATAAGGAA+TGG | + | chr4.2:88684637-88684656 | None:intergenic | 25.0% |
| AAGTCAATTATTGGAAGCTT+TGG | + | chr4.2:88683631-88683650 | None:intergenic | 30.0% | |
| AGAAATATAAGTCCTCCAAA+TGG | + | chr4.2:88684238-88684257 | None:intergenic | 30.0% | |
| AGAAATTCAACATGGTCATA+AGG | + | chr4.2:88685010-88685029 | None:intergenic | 30.0% | |
| ATTATTGTGAATGTGGCTTA+AGG | + | chr4.2:88684709-88684728 | None:intergenic | 30.0% | |
| ATTGCTTAGTTAACACTTCT+GGG | - | chr4.2:88684008-88684027 | MS.gene79517:intron | 30.0% | |
| CATATTGTACCAAAATCAAG+TGG | - | chr4.2:88684502-88684521 | MS.gene79517:intron | 30.0% | |
| CTCTTCTATTGAAGCAAATA+TGG | + | chr4.2:88683782-88683801 | None:intergenic | 30.0% | |
| TTATAATGTACCCTTCTTTG+GGG | + | chr4.2:88684940-88684959 | None:intergenic | 30.0% | |
| TTATGACCAAAGATGGAAAA+TGG | - | chr4.2:88684537-88684556 | MS.gene79517:intron | 30.0% | |
| TTGTTAATTGTGATTGCATC+AGG | - | chr4.2:88684681-88684700 | MS.gene79517:intron | 30.0% | |
| TTTCGATAAGGAATGGTTAA+TGG | + | chr4.2:88684630-88684649 | None:intergenic | 30.0% | |
| ! | CAGATGGAAACCAAAATTTT+AGG | - | chr4.2:88683962-88683981 | MS.gene79517:intron | 30.0% |
| ! | TCATATTAGAGCATCTCTAA+TGG | - | chr4.2:88684160-88684179 | MS.gene79517:CDS | 30.0% |
| ! | TCGTGTTATATGAATTTTGC+AGG | - | chr4.2:88684826-88684845 | MS.gene79517:CDS | 30.0% |
| ! | TTATATGAATTTTGCAGGCA+TGG | - | chr4.2:88684831-88684850 | MS.gene79517:CDS | 30.0% |
| !! | AAGATGATTTTGGAGAGTTT+AGG | - | chr4.2:88684350-88684369 | MS.gene79517:intron | 30.0% |
| !! | CACTTGATTTTGGTACAATA+TGG | + | chr4.2:88684504-88684523 | None:intergenic | 30.0% |
| !! | TTTAGGTGTTGAAAAGTACT+TGG | - | chr4.2:88684367-88684386 | MS.gene79517:intron | 30.0% |
| !!! | CTAAAATTTTGGTTTCCATC+TGG | + | chr4.2:88683964-88683983 | None:intergenic | 30.0% |
| AAAGTGGAACCATAGGATAT+TGG | + | chr4.2:88683873-88683892 | None:intergenic | 35.0% | |
| AAGCCACATTCACAATAATG+TGG | - | chr4.2:88684710-88684729 | MS.gene79517:intron | 35.0% | |
| AATGAGGCAAGATATTCAAC+AGG | - | chr4.2:88684902-88684921 | MS.gene79517:CDS | 35.0% | |
| ACAAAACTGCCTAAAGAAGA+AGG | + | chr4.2:88684575-88684594 | None:intergenic | 35.0% | |
| ATGAGGCAAGATATTCAACA+GGG | - | chr4.2:88684903-88684922 | MS.gene79517:CDS | 35.0% | |
| ATTACACTGAAAAAGGCCAA+AGG | - | chr4.2:88685038-88685057 | MS.gene79517:CDS | 35.0% | |
| ATTGTACCAAAATCAAGTGG+AGG | - | chr4.2:88684505-88684524 | MS.gene79517:intron | 35.0% | |
| CAAACAAGTGGCACAAAATT+AGG | - | chr4.2:88684446-88684465 | MS.gene79517:intron | 35.0% | |
| CATAACTCGGAGAAGATAAT+TGG | + | chr4.2:88684411-88684430 | None:intergenic | 35.0% | |
| CTCCGAGTTATGAAATACAA+AGG | - | chr4.2:88684419-88684438 | MS.gene79517:intron | 35.0% | |
| GATAGTGCCCTATAATTGTA+GGG | + | chr4.2:88684076-88684095 | None:intergenic | 35.0% | |
| GATTGCTTAGTTAACACTTC+TGG | - | chr4.2:88684007-88684026 | MS.gene79517:intron | 35.0% | |
| GGCCTTTGTATTTCATAACT+CGG | + | chr4.2:88684424-88684443 | None:intergenic | 35.0% | |
| GTACATTATAAAAGCTCCTG+AGG | - | chr4.2:88684949-88684968 | MS.gene79517:CDS | 35.0% | |
| TGACTTCAATAACCTCAACT+TGG | - | chr4.2:88683645-88683664 | MS.gene79517:CDS | 35.0% | |
| TTACACTGAAAAAGGCCAAA+GGG | - | chr4.2:88685039-88685058 | MS.gene79517:CDS | 35.0% | |
| TTAGAGGTTATGACCAAAGA+TGG | - | chr4.2:88684530-88684549 | MS.gene79517:intron | 35.0% | |
| TTATGTTGGCCAATATCCTA+TGG | - | chr4.2:88683861-88683880 | MS.gene79517:intron | 35.0% | |
| TTGTACCAAAATCAAGTGGA+GGG | - | chr4.2:88684506-88684525 | MS.gene79517:intron | 35.0% | |
| ! | AAGCCTTATCATGGTTATGT+TGG | - | chr4.2:88683847-88683866 | MS.gene79517:intron | 35.0% |
| ! | ATTATAGGGCACTATCGATT+TGG | - | chr4.2:88684080-88684099 | MS.gene79517:intron | 35.0% |
| ! | GCTTATCCATTTTCCATCTT+TGG | + | chr4.2:88684546-88684565 | None:intergenic | 35.0% |
| ! | TTTGCTATGCACACTTATTG+TGG | - | chr4.2:88685067-88685086 | MS.gene79517:CDS | 35.0% |
| !! | AATTATTGGAAGCTTTGGAG+TGG | + | chr4.2:88683626-88683645 | None:intergenic | 35.0% |
| !! | TGAGTAGCTTGGTTTGTAAA+GGG | + | chr4.2:88683816-88683835 | None:intergenic | 35.0% |
| !! | TTGAGTAGCTTGGTTTGTAA+AGG | + | chr4.2:88683817-88683836 | None:intergenic | 35.0% |
| !!! | AATTTTGTGCCACTTGTTTG+AGG | + | chr4.2:88684446-88684465 | None:intergenic | 35.0% |
| !!! | ATTTTGTGCCACTTGTTTGA+GGG | + | chr4.2:88684445-88684464 | None:intergenic | 35.0% |
| AAATCAAGTGGAGGGTTTAG+AGG | - | chr4.2:88684514-88684533 | MS.gene79517:intron | 40.0% | |
| ACAGTATGACCAACAACTTG+TGG | - | chr4.2:88683938-88683957 | MS.gene79517:intron | 40.0% | |
| AGCTACAAGCCTTCTTCTTT+AGG | - | chr4.2:88684563-88684582 | MS.gene79517:intron | 40.0% | |
| ATGCATGTGTGACTACGATT+TGG | + | chr4.2:88684767-88684786 | None:intergenic | 40.0% | |
| CATAAGGCCTAAAGAGCAAA+GGG | + | chr4.2:88684994-88685013 | None:intergenic | 40.0% | |
| CCTTAACAAGTGTCACCATT+TGG | - | chr4.2:88684220-88684239 | MS.gene79517:CDS | 40.0% | |
| CGATAGTGCCCTATAATTGT+AGG | + | chr4.2:88684077-88684096 | None:intergenic | 40.0% | |
| CTCTCAAAAAGTGGAACCAT+AGG | + | chr4.2:88683880-88683899 | None:intergenic | 40.0% | |
| CTCTGATGAGCTAAAAGAGT+TGG | - | chr4.2:88684313-88684332 | MS.gene79517:CDS | 40.0% | |
| CTTAGACACATTGAGTAGCT+TGG | + | chr4.2:88683827-88683846 | None:intergenic | 40.0% | |
| GACTTCACTATCTCCCAATT+GGG | + | chr4.2:88683682-88683701 | None:intergenic | 40.0% | |
| GCATAGCAAATTGATCCCTT+TGG | + | chr4.2:88685057-88685076 | None:intergenic | 40.0% | |
| TAACAAGTGTCACCATTTGG+AGG | - | chr4.2:88684223-88684242 | MS.gene79517:CDS | 40.0% | |
| TACTAGTGCCTTGTAGACTT+GGG | + | chr4.2:88683704-88683723 | None:intergenic | 40.0% | |
| TCATAAGGCCTAAAGAGCAA+AGG | + | chr4.2:88684995-88685014 | None:intergenic | 40.0% | |
| TGCATGTGTGACTACGATTT+GGG | + | chr4.2:88684766-88684785 | None:intergenic | 40.0% | |
| TGGCCAACATAACCATGATA+AGG | + | chr4.2:88683853-88683872 | None:intergenic | 40.0% | |
| TGTTCTCTATCCCCAAAGAA+GGG | - | chr4.2:88684927-88684946 | MS.gene79517:CDS | 40.0% | |
| TTGTTCTCTATCCCCAAAGA+AGG | - | chr4.2:88684926-88684945 | MS.gene79517:CDS | 40.0% | |
| ! | AAGCAAATATGGCTTTGCGA+AGG | + | chr4.2:88683771-88683790 | None:intergenic | 40.0% |
| ! | ATTTTGCAGGCATGGTCAAA+CGG | - | chr4.2:88684839-88684858 | MS.gene79517:CDS | 40.0% |
| ! | CCAAATGGTGACACTTGTTA+AGG | + | chr4.2:88684223-88684242 | None:intergenic | 40.0% |
| ! | CTAAACCCTCCACTTGATTT+TGG | + | chr4.2:88684514-88684533 | None:intergenic | 40.0% |
| ! | GTGTCTAAGAAGCCTTATCA+TGG | - | chr4.2:88683838-88683857 | MS.gene79517:CDS | 40.0% |
| ! | TACAAGGCACTAGTAGAGTA+TGG | - | chr4.2:88683709-88683728 | MS.gene79517:CDS | 40.0% |
| !! | AGGTGTTGAAAAGTACTTGG+AGG | - | chr4.2:88684370-88684389 | MS.gene79517:intron | 40.0% |
| !! | GGCAGTTTTGTAGCAATGAT+TGG | - | chr4.2:88684584-88684603 | MS.gene79517:intron | 40.0% |
| !!! | CTCTTTTAGCTCATCAGAGA+AGG | + | chr4.2:88684312-88684331 | None:intergenic | 40.0% |
| !!! | GTTCCACTTTTTGAGAGCAT+GGG | - | chr4.2:88683883-88683902 | MS.gene79517:intron | 40.0% |
| AACCTCAACTTGGAAGCCAA+AGG | - | chr4.2:88683655-88683674 | MS.gene79517:CDS | 45.0% | |
| AGGAACACCCTTTGCTCTTT+AGG | - | chr4.2:88684984-88685003 | MS.gene79517:CDS | 45.0% | |
| AGTGAAGTCCCAAGTCTACA+AGG | - | chr4.2:88683693-88683712 | MS.gene79517:CDS | 45.0% | |
| ATGCCCATGCTCTCAAAAAG+TGG | + | chr4.2:88683889-88683908 | None:intergenic | 45.0% | |
| CTACTAGTGCCTTGTAGACT+TGG | + | chr4.2:88683705-88683724 | None:intergenic | 45.0% | |
| CTCATCATCACCCGATGAAA+CGG | + | chr4.2:88684878-88684897 | None:intergenic | 45.0% | |
| GGACTTCACTATCTCCCAAT+TGG | + | chr4.2:88683683-88683702 | None:intergenic | 45.0% | |
| GGGCCACATTATTGTGAATG+TGG | + | chr4.2:88684716-88684735 | None:intergenic | 45.0% | |
| TACAAAGGCCCTCAAACAAG+TGG | - | chr4.2:88684434-88684453 | MS.gene79517:intron | 45.0% | |
| TATAAAAGCTCCTGAGGAGC+TGG | - | chr4.2:88684955-88684974 | MS.gene79517:CDS | 45.0% | |
| TATCTCCCAATTGGGACCTT+TGG | + | chr4.2:88683674-88683693 | None:intergenic | 45.0% | |
| TCTAATGGTAGTCGTTCGAG+AGG | - | chr4.2:88684175-88684194 | MS.gene79517:CDS | 45.0% | |
| TCTTGTCACTATGTGTGCTG+AGG | + | chr4.2:88684472-88684491 | None:intergenic | 45.0% | |
| ! | ATGGCTTTGCGAAGGTCTAA+AGG | + | chr4.2:88683763-88683782 | None:intergenic | 45.0% |
| ! | GGTGATGATGAGTGGAAATG+AGG | - | chr4.2:88684886-88684905 | MS.gene79517:CDS | 45.0% |
| ! | TTTCATCGGGTGATGATGAG+TGG | - | chr4.2:88684878-88684897 | MS.gene79517:CDS | 45.0% |
| !! | TAGGGCACTATCGATTTGGA+TGG | - | chr4.2:88684084-88684103 | MS.gene79517:intron | 45.0% |
| !!! | GGTTCCACTTTTTGAGAGCA+TGG | - | chr4.2:88683882-88683901 | MS.gene79517:intron | 45.0% |
| !! | AAAATTAAAACAAAATAATA+AGG | + | chr4.2:88684271-88684290 | None:intergenic | 5.0% |
| !! | AAACTAATTATTAATTATTA+AGG | - | chr4.2:88684648-88684667 | MS.gene79517:intron | 5.0% |
| !! | AAATTAAAACAAAATAATAA+GGG | + | chr4.2:88684270-88684289 | None:intergenic | 5.0% |
| ACCAACAACTTGTGGCCAGA+TGG | - | chr4.2:88683946-88683965 | MS.gene79517:intron | 50.0% | |
| GGAAGCCAAAGGTCCCAATT+GGG | - | chr4.2:88683666-88683685 | MS.gene79517:CDS | 50.0% | |
| TCCATCTGGCCACAAGTTGT+TGG | + | chr4.2:88683950-88683969 | None:intergenic | 50.0% | |
| TGGAAGCCAAAGGTCCCAAT+TGG | - | chr4.2:88683665-88683684 | MS.gene79517:CDS | 50.0% | |
| ! | GACCTTTGGCTTCCAAGTTG+AGG | + | chr4.2:88683660-88683679 | None:intergenic | 50.0% |
| AAAAGCTCCTGAGGAGCTGG+TGG | - | chr4.2:88684958-88684977 | MS.gene79517:CDS | 55.0% | |
| GCTGCATTCGCCGTTTCATC+GGG | - | chr4.2:88684865-88684884 | MS.gene79517:CDS | 55.0% | |
| GGCTGCATTCGCCGTTTCAT+CGG | - | chr4.2:88684864-88684883 | MS.gene79517:CDS | 55.0% | |
| TGCAGGCATGGTCAAACGGA+AGG | - | chr4.2:88684843-88684862 | MS.gene79517:CDS | 55.0% | |
| TCCTCATCCACCAGCTCCTC+AGG | + | chr4.2:88684968-88684987 | None:intergenic | 60.0% | |
| ! | TCCTGAGGAGCTGGTGGATG+AGG | - | chr4.2:88684964-88684983 | MS.gene79517:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 88683610 | 88685096 | 88683610 | ID=MS.gene79517 |
| chr4.2 | mRNA | 88683610 | 88685096 | 88683610 | ID=MS.gene79517.t1;Parent=MS.gene79517 |
| chr4.2 | exon | 88684766 | 88685096 | 88684766 | ID=MS.gene79517.t1.exon1;Parent=MS.gene79517.t1 |
| chr4.2 | CDS | 88684766 | 88685096 | 88684766 | ID=cds.MS.gene79517.t1;Parent=MS.gene79517.t1 |
| chr4.2 | exon | 88684087 | 88684334 | 88684087 | ID=MS.gene79517.t1.exon2;Parent=MS.gene79517.t1 |
| chr4.2 | CDS | 88684087 | 88684334 | 88684087 | ID=cds.MS.gene79517.t1;Parent=MS.gene79517.t1 |
| chr4.2 | exon | 88683610 | 88683858 | 88683610 | ID=MS.gene79517.t1.exon3;Parent=MS.gene79517.t1 |
| chr4.2 | CDS | 88683610 | 88683858 | 88683610 | ID=cds.MS.gene79517.t1;Parent=MS.gene79517.t1 |
| Gene Sequence |
| Protein sequence |
