Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80055.t1 | RHN82029.1 | 93.7 | 269 | 17 | 0 | 1 | 269 | 32 | 300 | 2.10E-140 | 508.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80055.t1 | A0A072VQG9 | 93.7 | 269 | 17 | 0 | 1 | 269 | 32 | 300 | 1.5e-140 | 508.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049181 | MS.gene80055 | 0.804856 | 1.77E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene80055 | 0.81191 | 5.53E-51 | -1.69E-46 |
| MS.gene051367 | MS.gene80055 | 0.801586 | 8.40E-49 | -1.69E-46 |
| MS.gene05156 | MS.gene80055 | 0.832922 | 7.17E-56 | -1.69E-46 |
| MS.gene052560 | MS.gene80055 | 0.84136 | 4.98E-58 | -1.69E-46 |
| MS.gene054056 | MS.gene80055 | 0.812145 | 4.91E-51 | -1.69E-46 |
| MS.gene055204 | MS.gene80055 | 0.822021 | 2.96E-53 | -1.69E-46 |
| MS.gene055942 | MS.gene80055 | 0.824887 | 6.33E-54 | -1.69E-46 |
| MS.gene056185 | MS.gene80055 | 0.81489 | 1.22E-51 | -1.69E-46 |
| MS.gene056530 | MS.gene80055 | 0.802718 | 4.91E-49 | -1.69E-46 |
| MS.gene056761 | MS.gene80055 | 0.829801 | 4.20E-55 | -1.69E-46 |
| MS.gene058628 | MS.gene80055 | 0.806378 | 8.47E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCTTGTTACTGGTAATT+TGG | 0.120632 | 1.1:-74715079 | MS.gene80055:CDS |
| AGTTTCCAAGCTGGCAAATT+TGG | 0.216666 | 1.1:+74715192 | None:intergenic |
| CATGTACATATGTTACTTAT+TGG | 0.218165 | 1.1:+74712490 | None:intergenic |
| ACTTATGTTCCTCCTCAATT+TGG | 0.238078 | 1.1:-74714982 | MS.gene80055:CDS |
| TTCCTCCTCAATTTGGTATT+CGG | 0.238577 | 1.1:-74714975 | MS.gene80055:CDS |
| GTGCTTCATGCTTGATGTTT+TGG | 0.241820 | 1.1:-74715320 | MS.gene80055:CDS |
| GGGAAAGCCCCGTCTGATTA+TGG | 0.267527 | 1.1:-74713949 | MS.gene80055:CDS |
| ATCAGTGATGGTGTTCTTCC+AGG | 0.297425 | 1.1:-74713892 | MS.gene80055:CDS |
| ATCATTACAACTCTTGTTAC+TGG | 0.301146 | 1.1:-74715087 | MS.gene80055:CDS |
| CATTTGGCTGTTGGCGGCTA+TGG | 0.301439 | 1.1:-74714940 | MS.gene80055:CDS |
| TCCTCCTCAATTTGGTATTC+GGG | 0.303663 | 1.1:-74714974 | MS.gene80055:CDS |
| CATGGTCAAAACATGAAATC+TGG | 0.311226 | 1.1:-74713516 | MS.gene80055:CDS |
| GACACTTGTTAACGATTCAT+TGG | 0.337668 | 1.1:-74715160 | MS.gene80055:CDS |
| ACTAGTTGGCGTATTATTCC+TGG | 0.368986 | 1.1:+74713874 | None:intergenic |
| TCGGGGAAATGGTGAACATT+TGG | 0.391554 | 1.1:-74714956 | MS.gene80055:CDS |
| CAATTTGGTATTCGGGGAAA+TGG | 0.396980 | 1.1:-74714967 | MS.gene80055:CDS |
| TGTCACCAAATTTGCCAGCT+TGG | 0.405069 | 1.1:-74715197 | MS.gene80055:CDS |
| TAGGATTCGGTTTCCGATGA+TGG | 0.405731 | 1.1:-74713970 | MS.gene80055:CDS |
| GAACTGTTGCTGTCTTATAA+TGG | 0.422416 | 1.1:-74714664 | MS.gene80055:CDS |
| TGCACTTGTGCAGGGTATGC+AGG | 0.429202 | 1.1:-74713573 | MS.gene80055:intron |
| GGTTATGGAGAAAGCAACTT+TGG | 0.430081 | 1.1:-74712521 | MS.gene80055:CDS |
| CAGCTGCAAAATATTCAGAT+TGG | 0.435154 | 1.1:-74714906 | MS.gene80055:CDS |
| AGCTGCAAAATATTCAGATT+GGG | 0.452477 | 1.1:-74714905 | MS.gene80055:CDS |
| TCTTGTTACTGGTAATTTGG+AGG | 0.471836 | 1.1:-74715076 | MS.gene80055:CDS |
| GGAAGAACACCATCACTGAT+AGG | 0.475333 | 1.1:+74713895 | None:intergenic |
| ATTTGGCTGTTGGCGGCTAT+GGG | 0.475928 | 1.1:-74714939 | MS.gene80055:CDS |
| CAAAATATTCAGATTGGGTA+AGG | 0.477505 | 1.1:-74714900 | MS.gene80055:intron |
| GAGTAAATGCAGGATGGACC+AGG | 0.497705 | 1.1:-74712842 | MS.gene80055:intron |
| AGGATTCGGTTTCCGATGAT+GGG | 0.501749 | 1.1:-74713969 | MS.gene80055:CDS |
| GATGATCACAACTTTAATCC+AGG | 0.513020 | 1.1:-74712819 | MS.gene80055:intron |
| ATGGTCAAAACATGAAATCT+GGG | 0.513865 | 1.1:-74713515 | MS.gene80055:CDS |
| TGTTAACGATTCATTGGAGA+AGG | 0.518710 | 1.1:-74715154 | MS.gene80055:CDS |
| ATGGAGAAAGCAACTTTGGA+AGG | 0.520760 | 1.1:-74712517 | MS.gene80055:CDS |
| AATGGTGAACATTTGGCTGT+TGG | 0.529164 | 1.1:-74714949 | MS.gene80055:CDS |
| GTCGAGAAGTTGCTCCATCA+TGG | 0.539467 | 1.1:-74713534 | MS.gene80055:CDS |
| GGTGAACATTTGGCTGTTGG+CGG | 0.542329 | 1.1:-74714946 | MS.gene80055:CDS |
| TGGCTGTTGGCGGCTATGGG+AGG | 0.546410 | 1.1:-74714936 | MS.gene80055:CDS |
| TGCAATGCAAGTTTCCAAGC+TGG | 0.556576 | 1.1:+74715183 | None:intergenic |
| AGCAACAGTTCTGTCACTGA+TGG | 0.558246 | 1.1:+74714676 | None:intergenic |
| TTTCCCCGAATACCAAATTG+AGG | 0.562586 | 1.1:+74714970 | None:intergenic |
| AACCATACTCAAGTACTAGT+TGG | 0.567061 | 1.1:+74713860 | None:intergenic |
| AGACGGGGCTTTCCCATCAT+CGG | 0.568285 | 1.1:+74713957 | None:intergenic |
| ATTAAAGTTGTGATCATCCC+TGG | 0.570286 | 1.1:+74712824 | None:intergenic |
| TGCAGGGTATGCAGGAGTGA+AGG | 0.571410 | 1.1:-74713565 | MS.gene80055:intron |
| AACAGTTCTGTCACTGATGG+AGG | 0.583762 | 1.1:+74714679 | None:intergenic |
| CCTCCTCAATTTGGTATTCG+GGG | 0.594882 | 1.1:-74714973 | MS.gene80055:CDS |
| CAGACAGCTCCTATCAGTGA+TGG | 0.620267 | 1.1:-74713904 | MS.gene80055:CDS |
| ATGGAGCAACTTCTCGACAT+GGG | 0.621778 | 1.1:+74713539 | None:intergenic |
| GATGGAGCAACTTCTCGACA+TGG | 0.624453 | 1.1:+74713538 | None:intergenic |
| TCAGATTTAAATATGAGCTG+AGG | 0.626076 | 1.1:+74715243 | None:intergenic |
| ATGCAGGATTAGGAAGACAA+TGG | 0.629546 | 1.1:-74714713 | MS.gene80055:intron |
| AATGGTGATCAAATACTCGA+AGG | 0.638330 | 1.1:-74714646 | MS.gene80055:CDS |
| GCTGGCAAATTTGGTGACAA+TGG | 0.641423 | 1.1:+74715201 | None:intergenic |
| CCCCGAATACCAAATTGAGG+AGG | 0.643632 | 1.1:+74714973 | None:intergenic |
| AGTAAATGCAGGATGGACCA+GGG | 0.672480 | 1.1:-74712841 | MS.gene80055:intron |
| TTTATTTCCATAATCAGACG+GGG | 0.699217 | 1.1:+74713942 | None:intergenic |
| GTCAAAACATGAAATCTGGG+AGG | 0.703539 | 1.1:-74713512 | MS.gene80055:CDS |
| TGCATGTGAGACTATATCTG+AGG | 0.711093 | 1.1:-74715046 | MS.gene80055:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACTTTATACTTATTTATA+TGG | - | chr1.1:74713814-74713833 | MS.gene80055:intron | 10.0% |
| !! | TTAATCATTATAAATAGGTA+TGG | + | chr1.1:74713506-74713525 | None:intergenic | 15.0% |
| !! | TTGTAAATAACATAAAATTC+TGG | + | chr1.1:74714099-74714118 | None:intergenic | 15.0% |
| !!! | GAATTTTATGTTATTTACAA+TGG | - | chr1.1:74714099-74714118 | MS.gene80055:intron | 15.0% |
| !!! | GGTTTTTAATCATTATAAAT+AGG | + | chr1.1:74713511-74713530 | None:intergenic | 15.0% |
| !!! | TAATTTATTTCTGTAACTTT+TGG | + | chr1.1:74714185-74714204 | None:intergenic | 15.0% |
| !! | AAATAACCAAACTTGTAAAT+AGG | + | chr1.1:74714682-74714701 | None:intergenic | 20.0% |
| !! | AAGTAGTAAATAAATTTACC+TGG | + | chr1.1:74715054-74715073 | None:intergenic | 20.0% |
| !! | AGTAAATTCCTACTATTATT+TGG | - | chr1.1:74713570-74713589 | MS.gene80055:intron | 20.0% |
| !! | ATACTATAAAGATGTTTCAT+TGG | + | chr1.1:74714210-74714229 | None:intergenic | 20.0% |
| !! | ATTGTTAGAATATTAAAGCA+TGG | + | chr1.1:74713419-74713438 | None:intergenic | 20.0% |
| !! | GTAAATTCCTACTATTATTT+GGG | - | chr1.1:74713571-74713590 | MS.gene80055:intron | 20.0% |
| !!! | GTTTTATAATTGCAAATGTT+GGG | + | chr1.1:74715282-74715301 | None:intergenic | 20.0% |
| !!! | TTCAAATTGTTTTGGATTAA+TGG | - | chr1.1:74713537-74713556 | MS.gene80055:CDS | 20.0% |
| !!! | TTTTTATTTCCATAATCAGA+CGG | + | chr1.1:74713915-74713934 | None:intergenic | 20.0% |
| ! | AATATGACCCAAATAATAGT+AGG | + | chr1.1:74713581-74713600 | None:intergenic | 25.0% |
| ! | CAAGTTAACAAAACCAATAA+AGG | + | chr1.1:74714801-74714820 | None:intergenic | 25.0% |
| ! | CCAAAACAATTTGAAGATAA+TGG | + | chr1.1:74713532-74713551 | None:intergenic | 25.0% |
| ! | GTAATTACAGCATATTAATG+TGG | + | chr1.1:74714596-74714615 | None:intergenic | 25.0% |
| ! | TAATAGCATTTCAAGACTAT+TGG | - | chr1.1:74713626-74713645 | MS.gene80055:intron | 25.0% |
| ! | TTAAGGTGGTAAATTTATAC+TGG | - | chr1.1:74714945-74714964 | MS.gene80055:CDS | 25.0% |
| !! | ACTACTTTCACATTTTGAAT+TGG | - | chr1.1:74715067-74715086 | MS.gene80055:CDS | 25.0% |
| !! | AGAAAATTAGCACTGAAATT+TGG | + | chr1.1:74713064-74713083 | None:intergenic | 25.0% |
| !! | CCATTATCTTCAAATTGTTT+TGG | - | chr1.1:74713529-74713548 | MS.gene80055:CDS | 25.0% |
| !! | CTACTTTCACATTTTGAATT+GGG | - | chr1.1:74715068-74715087 | MS.gene80055:CDS | 25.0% |
| !! | CTCAACAAAAGTATAAAATC+CGG | - | chr1.1:74714129-74714148 | MS.gene80055:intron | 25.0% |
| !! | CTTTTCCTGATTAAAACATA+AGG | + | chr1.1:74715312-74715331 | None:intergenic | 25.0% |
| !! | GATTAAAACATAAGGCATTT+CGG | + | chr1.1:74715304-74715323 | None:intergenic | 25.0% |
| !! | TCAACAAAAGTATAAAATCC+GGG | - | chr1.1:74714130-74714149 | MS.gene80055:intron | 25.0% |
| !! | TTCTGGTAAATTTTTCTAGA+AGG | + | chr1.1:74714082-74714101 | None:intergenic | 25.0% |
| !! | TTTTAATCAGGAAAAGGTTA+TGG | - | chr1.1:74715316-74715335 | MS.gene80055:CDS | 25.0% |
| !!! | AAATGCCTTATGTTTTAATC+AGG | - | chr1.1:74715304-74715323 | MS.gene80055:CDS | 25.0% |
| !!! | CTTATGTTTTAATCAGGAAA+AGG | - | chr1.1:74715310-74715329 | MS.gene80055:CDS | 25.0% |
| !!! | CTTTATTGGTTTTGTTAACT+TGG | - | chr1.1:74714799-74714818 | MS.gene80055:intron | 25.0% |
| !!! | GGTTTTATAATTGCAAATGT+TGG | + | chr1.1:74715283-74715302 | None:intergenic | 25.0% |
| !!! | TCTGGTAAATTTTTCTAGAA+GGG | + | chr1.1:74714081-74714100 | None:intergenic | 25.0% |
| !!! | TTCTTTTTTTAGTCTTACTG+AGG | - | chr1.1:74714400-74714419 | MS.gene80055:intron | 25.0% |
| !!! | TTTTAGGTTCAAATCTTATG+AGG | + | chr1.1:74713370-74713389 | None:intergenic | 25.0% |
| !!! | TTTTATTTCCATAATCAGAC+GGG | + | chr1.1:74713914-74713933 | None:intergenic | 25.0% |
| AACTCTTGTTACTGGTAATT+TGG | - | chr1.1:74712773-74712792 | MS.gene80055:intron | 30.0% | |
| AACTTTGCAAATTGTTCGTT+TGG | - | chr1.1:74714432-74714451 | MS.gene80055:intron | 30.0% | |
| AGCTGCAAAATATTCAGATT+GGG | - | chr1.1:74712947-74712966 | MS.gene80055:intron | 30.0% | |
| AGTTGCATCTAGTAATTTGA+AGG | + | chr1.1:74713109-74713128 | None:intergenic | 30.0% | |
| ATCATTACAACTCTTGTTAC+TGG | - | chr1.1:74712765-74712784 | MS.gene80055:intron | 30.0% | |
| ATGGACCAAAAAGGAATTTA+AGG | - | chr1.1:74714928-74714947 | MS.gene80055:CDS | 30.0% | |
| ATGGTCAAAACATGAAATCT+GGG | - | chr1.1:74714337-74714356 | MS.gene80055:intron | 30.0% | |
| CAAAATATTCAGATTGGGTA+AGG | - | chr1.1:74712952-74712971 | MS.gene80055:intron | 30.0% | |
| GATTTCAGACTATCCTTTAT+TGG | - | chr1.1:74714785-74714804 | MS.gene80055:intron | 30.0% | |
| TACTGACCTATTTACAAGTT+TGG | - | chr1.1:74714673-74714692 | MS.gene80055:CDS | 30.0% | |
| TCAGATTTAAATATGAGCTG+AGG | + | chr1.1:74712612-74712631 | None:intergenic | 30.0% | |
| TTATATGGATGAGCATAGAA+GGG | + | chr1.1:74713022-74713041 | None:intergenic | 30.0% | |
| TTCTCAATTTGAGTAAATGC+AGG | - | chr1.1:74715000-74715019 | MS.gene80055:CDS | 30.0% | |
| TTTAAATGTGTCGAAATCCT+CGG | + | chr1.1:74714527-74714546 | None:intergenic | 30.0% | |
| TTTATTTCCATAATCAGACG+GGG | + | chr1.1:74713913-74713932 | None:intergenic | 30.0% | |
| TTTGGTTAGTAACCATATGT+GGG | - | chr1.1:74713339-74713358 | MS.gene80055:intron | 30.0% | |
| ! | ATCGTTTCCTGTTTCATTTT+AGG | - | chr1.1:74713863-74713882 | MS.gene80055:intron | 30.0% |
| ! | TACCACCTTAAATTCCTTTT+TGG | + | chr1.1:74714936-74714955 | None:intergenic | 30.0% |
| !! | TAGAAAATAAAAGCGCTAAC+AGG | - | chr1.1:74714229-74714248 | MS.gene80055:intron | 30.0% |
| !!! | ATTTCATGTTTTGACCATGA+TGG | + | chr1.1:74714335-74714354 | None:intergenic | 30.0% |
| !!! | TCCTGTTTCATTTTAGGATT+CGG | - | chr1.1:74713869-74713888 | MS.gene80055:CDS | 30.0% |
| AAACCTGGAAGGATATATCA+TGG | - | chr1.1:74714909-74714928 | MS.gene80055:CDS | 35.0% | |
| AACCATACTCAAGTACTAGT+TGG | + | chr1.1:74713995-74714014 | None:intergenic | 35.0% | |
| AAGTTAGCTGGAATAGTTGT+AGG | + | chr1.1:74713468-74713487 | None:intergenic | 35.0% | |
| AATGGTGATCAAATACTCGA+AGG | - | chr1.1:74713206-74713225 | MS.gene80055:intron | 35.0% | |
| ACCGAATCCTAAAATGAAAC+AGG | + | chr1.1:74713873-74713892 | None:intergenic | 35.0% | |
| ACTAGTACTTGAGTATGGTT+TGG | - | chr1.1:74713995-74714014 | MS.gene80055:intron | 35.0% | |
| ACTTATGTTCCTCCTCAATT+TGG | - | chr1.1:74712870-74712889 | MS.gene80055:intron | 35.0% | |
| ATTAAAGTTGTGATCATCCC+TGG | + | chr1.1:74715031-74715050 | None:intergenic | 35.0% | |
| CAATGACATTGTATGTCAGT+TGG | - | chr1.1:74714704-74714723 | MS.gene80055:CDS | 35.0% | |
| CAATTTGAGTAAATGCAGGA+TGG | - | chr1.1:74715004-74715023 | MS.gene80055:CDS | 35.0% | |
| CACATATGGTTACTAACCAA+AGG | + | chr1.1:74713340-74713359 | None:intergenic | 35.0% | |
| CAGCTGCAAAATATTCAGAT+TGG | - | chr1.1:74712946-74712965 | MS.gene80055:intron | 35.0% | |
| CATGGTCAAAACATGAAATC+TGG | - | chr1.1:74714336-74714355 | MS.gene80055:intron | 35.0% | |
| CTAAAAGCTGTTGCTAATCA+TGG | - | chr1.1:74713384-74713403 | MS.gene80055:intron | 35.0% | |
| CTAAAATTCTCTGTGTCCTT+TGG | - | chr1.1:74713321-74713340 | MS.gene80055:intron | 35.0% | |
| CTGAAATTTGGTATCGTCAA+AGG | + | chr1.1:74713052-74713071 | None:intergenic | 35.0% | |
| CTTATATGGATGAGCATAGA+AGG | + | chr1.1:74713023-74713042 | None:intergenic | 35.0% | |
| CTTTGGTTAGTAACCATATG+TGG | - | chr1.1:74713338-74713357 | MS.gene80055:intron | 35.0% | |
| GAACTGTTGCTGTCTTATAA+TGG | - | chr1.1:74713188-74713207 | MS.gene80055:intron | 35.0% | |
| GACCAAAAAGGAATTTAAGG+TGG | - | chr1.1:74714931-74714950 | MS.gene80055:CDS | 35.0% | |
| GATAAAATAAGCTCACCTTG+CGG | + | chr1.1:74713259-74713278 | None:intergenic | 35.0% | |
| GATGATCACAACTTTAATCC+AGG | - | chr1.1:74715033-74715052 | MS.gene80055:CDS | 35.0% | |
| GGATATATCATGGACCAAAA+AGG | - | chr1.1:74714919-74714938 | MS.gene80055:CDS | 35.0% | |
| GTAAATGGACAGATGCATAA+TGG | + | chr1.1:74715133-74715152 | None:intergenic | 35.0% | |
| GTCAAAGGCAGTAACTTATA+TGG | + | chr1.1:74713037-74713056 | None:intergenic | 35.0% | |
| TACAAAATAGTATTCTCGCG+AGG | + | chr1.1:74714623-74714642 | None:intergenic | 35.0% | |
| TACAACTATTCCAGCTAACT+TGG | - | chr1.1:74713467-74713486 | MS.gene80055:intron | 35.0% | |
| TACTGCTAGATCGAAATCAA+TGG | - | chr1.1:74714501-74714520 | MS.gene80055:intron | 35.0% | |
| TATGAGGTAATTCCCACATA+TGG | + | chr1.1:74713354-74713373 | None:intergenic | 35.0% | |
| TATGCATCTGTCCATTTACA+CGG | - | chr1.1:74715134-74715153 | MS.gene80055:CDS | 35.0% | |
| TCTTGTTACTGGTAATTTGG+AGG | - | chr1.1:74712776-74712795 | MS.gene80055:intron | 35.0% | |
| TGAAATAAGCTTATGCGTCA+TGG | - | chr1.1:74713788-74713807 | MS.gene80055:intron | 35.0% | |
| TGTTAACGATTCATTGGAGA+AGG | - | chr1.1:74712698-74712717 | MS.gene80055:intron | 35.0% | |
| TTATCTCATTTGATGGAGAG+TGG | - | chr1.1:74714155-74714174 | MS.gene80055:intron | 35.0% | |
| TTCCTCCTCAATTTGGTATT+CGG | - | chr1.1:74712877-74712896 | MS.gene80055:intron | 35.0% | |
| ! | CACATTTTGAATTGGGACTT+GGG | - | chr1.1:74715075-74715094 | MS.gene80055:CDS | 35.0% |
| ! | CATGATTAGCAACAGCTTTT+AGG | + | chr1.1:74713386-74713405 | None:intergenic | 35.0% |
| ! | GACACTTGTTAACGATTCAT+TGG | - | chr1.1:74712692-74712711 | MS.gene80055:intron | 35.0% |
| ! | GATAGTCTGAAATCTAGTGT+AGG | + | chr1.1:74714779-74714798 | None:intergenic | 35.0% |
| ! | TCACATTTTGAATTGGGACT+TGG | - | chr1.1:74715074-74715093 | MS.gene80055:CDS | 35.0% |
| ! | TGCTTCATGCTTGATGTTTT+GGG | - | chr1.1:74712533-74712552 | MS.gene80055:intron | 35.0% |
| ! | TTTTTCTGCAATGCAGGATT+AGG | - | chr1.1:74713129-74713148 | MS.gene80055:intron | 35.0% |
| !! | AGGTTATTTCTCATGTGACT+TGG | - | chr1.1:74714249-74714268 | MS.gene80055:intron | 35.0% |
| !!! | ATCCTTCCAGGTTTTAGAAT+GGG | + | chr1.1:74714903-74714922 | None:intergenic | 35.0% |
| !!! | TATCCTTCCAGGTTTTAGAA+TGG | + | chr1.1:74714904-74714923 | None:intergenic | 35.0% |
| !!! | TTTTTTCGTTGTTATCCGCA+AGG | - | chr1.1:74713241-74713260 | MS.gene80055:intron | 35.0% |
| AACTATTCCAGCTAACTTGG+TGG | - | chr1.1:74713470-74713489 | MS.gene80055:intron | 40.0% | |
| AAGACCACAAACCGTGTAAA+TGG | + | chr1.1:74715148-74715167 | None:intergenic | 40.0% | |
| AAGCTGTTGCTAATCATGGT+TGG | - | chr1.1:74713388-74713407 | MS.gene80055:intron | 40.0% | |
| AATGGTGAACATTTGGCTGT+TGG | - | chr1.1:74712903-74712922 | MS.gene80055:intron | 40.0% | |
| ACTAGTTGGCGTATTATTCC+TGG | + | chr1.1:74713981-74714000 | None:intergenic | 40.0% | |
| AGCTGTTGCTAATCATGGTT+GGG | - | chr1.1:74713389-74713408 | MS.gene80055:intron | 40.0% | |
| AGTTTCCAAGCTGGCAAATT+TGG | + | chr1.1:74712663-74712682 | None:intergenic | 40.0% | |
| ATGCAGGATTAGGAAGACAA+TGG | - | chr1.1:74713139-74713158 | MS.gene80055:intron | 40.0% | |
| ATGGAGAAAGCAACTTTGGA+AGG | - | chr1.1:74715335-74715354 | MS.gene80055:CDS | 40.0% | |
| ATGTCATTGCAGATAGCTTG+AGG | - | chr1.1:74714828-74714847 | MS.gene80055:intron | 40.0% | |
| ATTCACTCACTACTATGTGG+TGG | - | chr1.1:74714552-74714571 | MS.gene80055:intron | 40.0% | |
| CAATTTGGTATTCGGGGAAA+TGG | - | chr1.1:74712885-74712904 | MS.gene80055:intron | 40.0% | |
| CCATCAAATGAGATAAAGCC+CGG | + | chr1.1:74714151-74714170 | None:intergenic | 40.0% | |
| GCAACATGCAGATAGTATTC+AGG | - | chr1.1:74714856-74714875 | MS.gene80055:intron | 40.0% | |
| GGTTATGGAGAAAGCAACTT+TGG | - | chr1.1:74715331-74715350 | MS.gene80055:CDS | 40.0% | |
| GTCAAAACATGAAATCTGGG+AGG | - | chr1.1:74714340-74714359 | MS.gene80055:intron | 40.0% | |
| TACATTCTCAAGAGTTCACG+AGG | - | chr1.1:74713707-74713726 | MS.gene80055:intron | 40.0% | |
| TCCTCCTCAATTTGGTATTC+GGG | - | chr1.1:74712878-74712897 | MS.gene80055:intron | 40.0% | |
| TGCATGTGAGACTATATCTG+AGG | - | chr1.1:74712806-74712825 | MS.gene80055:intron | 40.0% | |
| TGCATTCACTCACTACTATG+TGG | - | chr1.1:74714549-74714568 | MS.gene80055:intron | 40.0% | |
| TTAACTTCCACCAAGTTAGC+TGG | + | chr1.1:74713480-74713499 | None:intergenic | 40.0% | |
| TTTCCCCGAATACCAAATTG+AGG | + | chr1.1:74712885-74712904 | None:intergenic | 40.0% | |
| ! | GAAAAAGAGGGTTGATTCTG+AGG | - | chr1.1:74712737-74712756 | MS.gene80055:intron | 40.0% |
| ! | GTATTCAGGTTCCAACAGAA+TGG | - | chr1.1:74714870-74714889 | MS.gene80055:intron | 40.0% |
| ! | GTGCTTCATGCTTGATGTTT+TGG | - | chr1.1:74712532-74712551 | MS.gene80055:intron | 40.0% |
| ! | TTTTGAATTGGGACTTGGGA+TGG | - | chr1.1:74715079-74715098 | MS.gene80055:CDS | 40.0% |
| !! | AATCAGCCCATTCTAAAACC+TGG | - | chr1.1:74714894-74714913 | MS.gene80055:intron | 40.0% |
| !!! | AACCCTCTTTTTCAGTGCAA+AGG | + | chr1.1:74712730-74712749 | None:intergenic | 40.0% |
| !!! | ACCCTCTTTTTCAGTGCAAA+GGG | + | chr1.1:74712729-74712748 | None:intergenic | 40.0% |
| !!! | CATGCTTGATGTTTTGGGAA+AGG | - | chr1.1:74712538-74712557 | MS.gene80055:intron | 40.0% |
| !!! | GCAACTTTTTTCTGCAATGC+AGG | - | chr1.1:74713123-74713142 | MS.gene80055:intron | 40.0% |
| AACAGTTCTGTCACTGATGG+AGG | + | chr1.1:74713176-74713195 | None:intergenic | 45.0% | |
| AGCAACAGTTCTGTCACTGA+TGG | + | chr1.1:74713179-74713198 | None:intergenic | 45.0% | |
| AGTAAATGCAGGATGGACCA+GGG | - | chr1.1:74715011-74715030 | MS.gene80055:CDS | 45.0% | |
| ATGGAGCAACTTCTCGACAT+GGG | + | chr1.1:74714316-74714335 | None:intergenic | 45.0% | |
| CCTCCTCAATTTGGTATTCG+GGG | - | chr1.1:74712879-74712898 | MS.gene80055:intron | 45.0% | |
| CGCCAACTAGTACTTGAGTA+TGG | - | chr1.1:74713990-74714009 | MS.gene80055:intron | 45.0% | |
| CTGTCCATTTACACGGTTTG+TGG | - | chr1.1:74715141-74715160 | MS.gene80055:CDS | 45.0% | |
| GCCCTTTGCACTGAAAAAGA+GGG | - | chr1.1:74712725-74712744 | MS.gene80055:intron | 45.0% | |
| GGAAGAACACCATCACTGAT+AGG | + | chr1.1:74713960-74713979 | None:intergenic | 45.0% | |
| GGTCCATGATATATCCTTCC+AGG | + | chr1.1:74714915-74714934 | None:intergenic | 45.0% | |
| TAGATCGAAATCAATGGCCG+AGG | - | chr1.1:74714507-74714526 | MS.gene80055:intron | 45.0% | |
| TCGGGGAAATGGTGAACATT+TGG | - | chr1.1:74712896-74712915 | MS.gene80055:intron | 45.0% | |
| TGCAATGCAAGTTTCCAAGC+TGG | + | chr1.1:74712672-74712691 | None:intergenic | 45.0% | |
| TGCCCTTTGCACTGAAAAAG+AGG | - | chr1.1:74712724-74712743 | MS.gene80055:intron | 45.0% | |
| TGTCACCAAATTTGCCAGCT+TGG | - | chr1.1:74712655-74712674 | MS.gene80055:intron | 45.0% | |
| ! | AGGATTCGGTTTCCGATGAT+GGG | - | chr1.1:74713883-74713902 | MS.gene80055:CDS | 45.0% |
| ! | ATCAGTGATGGTGTTCTTCC+AGG | - | chr1.1:74713960-74713979 | MS.gene80055:CDS | 45.0% |
| ! | CAAGAGTTCACGAGGTATCT+TGG | - | chr1.1:74713715-74713734 | MS.gene80055:intron | 45.0% |
| ! | CCGGGCTTTATCTCATTTGA+TGG | - | chr1.1:74714148-74714167 | MS.gene80055:intron | 45.0% |
| ! | GCATGATTTGCACTTGTGCA+GGG | - | chr1.1:74714271-74714290 | MS.gene80055:intron | 45.0% |
| ! | GCTGGCAAATTTGGTGACAA+TGG | + | chr1.1:74712654-74712673 | None:intergenic | 45.0% |
| ! | TAGGATTCGGTTTCCGATGA+TGG | - | chr1.1:74713882-74713901 | MS.gene80055:CDS | 45.0% |
| !! | AGCCCATTCTAAAACCTGGA+AGG | - | chr1.1:74714898-74714917 | MS.gene80055:intron | 45.0% |
| AGAAGGGACTCGTTCTTCTG+TGG | + | chr1.1:74714065-74714084 | None:intergenic | 50.0% | |
| ATTTGGCTGTTGGCGGCTAT+GGG | - | chr1.1:74712913-74712932 | MS.gene80055:intron | 50.0% | |
| CAGACAGCTCCTATCAGTGA+TGG | - | chr1.1:74713948-74713967 | MS.gene80055:CDS | 50.0% | |
| CCCCGAATACCAAATTGAGG+AGG | + | chr1.1:74712882-74712901 | None:intergenic | 50.0% | |
| GAGTAAATGCAGGATGGACC+AGG | - | chr1.1:74715010-74715029 | MS.gene80055:CDS | 50.0% | |
| GATGGAGCAACTTCTCGACA+TGG | + | chr1.1:74714317-74714336 | None:intergenic | 50.0% | |
| GGTGAACATTTGGCTGTTGG+CGG | - | chr1.1:74712906-74712925 | MS.gene80055:intron | 50.0% | |
| GTCGAGAAGTTGCTCCATCA+TGG | - | chr1.1:74714318-74714337 | MS.gene80055:intron | 50.0% | |
| TGGGCTGATTGCCATTCTGT+TGG | + | chr1.1:74714884-74714903 | None:intergenic | 50.0% | |
| ! | GGCATGATTTGCACTTGTGC+AGG | - | chr1.1:74714270-74714289 | MS.gene80055:intron | 50.0% |
| AGACGGGGCTTTCCCATCAT+CGG | + | chr1.1:74713898-74713917 | None:intergenic | 55.0% | |
| CATTTGGCTGTTGGCGGCTA+TGG | - | chr1.1:74712912-74712931 | MS.gene80055:intron | 55.0% | |
| GGGAAAGCCCCGTCTGATTA+TGG | - | chr1.1:74713903-74713922 | MS.gene80055:CDS | 55.0% | |
| TGCACTTGTGCAGGGTATGC+AGG | - | chr1.1:74714279-74714298 | MS.gene80055:intron | 55.0% | |
| TGCAGGGTATGCAGGAGTGA+AGG | - | chr1.1:74714287-74714306 | MS.gene80055:intron | 55.0% | |
| TGGCTGTTGGCGGCTATGGG+AGG | - | chr1.1:74712916-74712935 | MS.gene80055:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 74712502 | 74715372 | 74712502 | ID=MS.gene80055 |
| chr1.1 | mRNA | 74712502 | 74715372 | 74712502 | ID=MS.gene80055.t1;Parent=MS.gene80055 |
| chr1.1 | exon | 74714901 | 74715372 | 74714901 | ID=MS.gene80055.t1.exon1;Parent=MS.gene80055.t1 |
| chr1.1 | CDS | 74714901 | 74715372 | 74714901 | ID=cds.MS.gene80055.t1;Parent=MS.gene80055.t1 |
| chr1.1 | exon | 74714612 | 74714729 | 74714612 | ID=MS.gene80055.t1.exon2;Parent=MS.gene80055.t1 |
| chr1.1 | CDS | 74714612 | 74714729 | 74714612 | ID=cds.MS.gene80055.t1;Parent=MS.gene80055.t1 |
| chr1.1 | exon | 74713868 | 74713989 | 74713868 | ID=MS.gene80055.t1.exon3;Parent=MS.gene80055.t1 |
| chr1.1 | CDS | 74713868 | 74713989 | 74713868 | ID=cds.MS.gene80055.t1;Parent=MS.gene80055.t1 |
| chr1.1 | exon | 74713497 | 74713582 | 74713497 | ID=MS.gene80055.t1.exon4;Parent=MS.gene80055.t1 |
| chr1.1 | CDS | 74713497 | 74713582 | 74713497 | ID=cds.MS.gene80055.t1;Parent=MS.gene80055.t1 |
| chr1.1 | exon | 74712820 | 74712852 | 74712820 | ID=MS.gene80055.t1.exon5;Parent=MS.gene80055.t1 |
| chr1.1 | CDS | 74712820 | 74712852 | 74712820 | ID=cds.MS.gene80055.t1;Parent=MS.gene80055.t1 |
| chr1.1 | exon | 74712502 | 74712548 | 74712502 | ID=MS.gene80055.t1.exon6;Parent=MS.gene80055.t1 |
| chr1.1 | CDS | 74712502 | 74712548 | 74712502 | ID=cds.MS.gene80055.t1;Parent=MS.gene80055.t1 |
| Gene Sequence |
| Protein sequence |
