Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04986.t1 | P04078.1 | 100 | 356 | 0 | 0 | 1 | 356 | 1 | 356 | 3.90E-213 | 750.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04986.t1 | P04078 | 100.0 | 356 | 0 | 0 | 1 | 356 | 1 | 356 | 9.5e-216 | 750.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04986.t1 | G7J9B8 | 99.2 | 356 | 3 | 0 | 1 | 356 | 1 | 356 | 3.1e-212 | 746.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04986 | MS.gene050216 | -0.802961 | 4.38E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene050612 | -0.803503 | 3.38E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene052916 | -0.806804 | 6.88E-50 | -1.69E-46 |
| MS.gene04986 | MS.gene053561 | 0.800437 | 1.44E-48 | -1.69E-46 |
| MS.gene04986 | MS.gene055776 | -0.831226 | 1.88E-55 | -1.69E-46 |
| MS.gene04986 | MS.gene055942 | 0.815345 | 9.70E-52 | -1.69E-46 |
| MS.gene04986 | MS.gene056185 | 0.858392 | 8.50E-63 | -1.69E-46 |
| MS.gene04986 | MS.gene056504 | -0.802377 | 5.77E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene058175 | 0.802576 | 5.25E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene059865 | -0.80774 | 4.36E-50 | -1.69E-46 |
| MS.gene04986 | MS.gene062071 | 0.8038 | 2.93E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene064019 | 0.821678 | 3.55E-53 | -1.69E-46 |
| MS.gene04986 | MS.gene065323 | -0.803251 | 3.81E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene065380 | 0.804699 | 1.91E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene066532 | 0.801056 | 1.08E-48 | -1.69E-46 |
| MS.gene04986 | MS.gene067085 | 0.813253 | 2.81E-51 | -1.69E-46 |
| MS.gene04986 | MS.gene067091 | 0.839002 | 2.06E-57 | -1.69E-46 |
| MS.gene04986 | MS.gene067954 | -0.803763 | 2.99E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene071172 | 0.810701 | 1.01E-50 | -1.69E-46 |
| MS.gene04986 | MS.gene071810 | 0.809909 | 1.50E-50 | -1.69E-46 |
| MS.gene04986 | MS.gene071843 | 0.801142 | 1.04E-48 | -1.69E-46 |
| MS.gene04986 | MS.gene071942 | 0.808403 | 3.15E-50 | -1.69E-46 |
| MS.gene04986 | MS.gene072378 | 0.819302 | 1.25E-52 | -1.69E-46 |
| MS.gene04986 | MS.gene072871 | -0.80388 | 2.82E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene072979 | 0.801449 | 8.96E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene074383 | 0.803228 | 3.85E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene09946 | 0.804001 | 2.66E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene20093 | 0.820334 | 7.25E-53 | -1.69E-46 |
| MS.gene04986 | MS.gene21143 | 0.803138 | 4.02E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene23352 | -0.803018 | 4.26E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene24298 | 0.801158 | 1.03E-48 | -1.69E-46 |
| MS.gene04986 | MS.gene24883 | 0.820227 | 7.67E-53 | -1.69E-46 |
| MS.gene04986 | MS.gene25062 | 0.807093 | 5.98E-50 | -1.69E-46 |
| MS.gene04986 | MS.gene26941 | 0.804226 | 2.39E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene27550 | 0.81833 | 2.07E-52 | -1.69E-46 |
| MS.gene04986 | MS.gene27968 | 0.801444 | 8.98E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene33603 | -0.831213 | 1.90E-55 | -1.69E-46 |
| MS.gene04986 | MS.gene34168 | -0.809096 | 2.24E-50 | -1.69E-46 |
| MS.gene04986 | MS.gene34589 | 0.819395 | 1.19E-52 | -1.69E-46 |
| MS.gene04986 | MS.gene37538 | 0.805754 | 1.15E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene38046 | -0.823277 | 1.51E-53 | -1.69E-46 |
| MS.gene04986 | MS.gene38214 | -0.806057 | 9.89E-50 | -1.69E-46 |
| MS.gene04986 | MS.gene40699 | 0.819446 | 1.16E-52 | -1.69E-46 |
| MS.gene04986 | MS.gene41633 | -0.827215 | 1.77E-54 | -1.69E-46 |
| MS.gene04986 | MS.gene44022 | -0.85288 | 3.45E-61 | -1.69E-46 |
| MS.gene04986 | MS.gene45147 | 0.820267 | 7.51E-53 | -1.69E-46 |
| MS.gene04986 | MS.gene45765 | 0.810424 | 1.16E-50 | -1.69E-46 |
| MS.gene04986 | MS.gene47475 | -0.813081 | 3.07E-51 | -1.69E-46 |
| MS.gene04986 | MS.gene47930 | 0.831902 | 1.28E-55 | -1.69E-46 |
| MS.gene04986 | MS.gene52062 | 0.829713 | 4.41E-55 | -1.69E-46 |
| MS.gene04986 | MS.gene53498 | 0.836644 | 8.29E-57 | -1.69E-46 |
| MS.gene04986 | MS.gene54952 | 0.8037 | 3.08E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene56769 | 0.802184 | 6.33E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene57034 | -0.807374 | 5.22E-50 | -1.69E-46 |
| MS.gene04986 | MS.gene57987 | 0.804625 | 1.97E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene58223 | 0.801664 | 8.09E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene63020 | -0.824577 | 7.49E-54 | -1.69E-46 |
| MS.gene04986 | MS.gene63691 | 0.80104 | 1.09E-48 | -1.69E-46 |
| MS.gene04986 | MS.gene66360 | 0.811378 | 7.22E-51 | -1.69E-46 |
| MS.gene04986 | MS.gene66463 | 0.808424 | 3.12E-50 | -1.69E-46 |
| MS.gene04986 | MS.gene68181 | 0.808955 | 2.40E-50 | -1.69E-46 |
| MS.gene04986 | MS.gene68458 | -0.815773 | 7.79E-52 | -1.69E-46 |
| MS.gene04986 | MS.gene69922 | -0.860501 | 1.98E-63 | -1.69E-46 |
| MS.gene04986 | MS.gene70806 | -0.844565 | 6.99E-59 | -1.69E-46 |
| MS.gene04986 | MS.gene71268 | -0.806364 | 8.53E-50 | -1.69E-46 |
| MS.gene04986 | MS.gene73256 | 0.821072 | 4.90E-53 | -1.69E-46 |
| MS.gene04986 | MS.gene75048 | 0.801858 | 7.38E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene75517 | 0.841389 | 4.90E-58 | -1.69E-46 |
| MS.gene04986 | MS.gene76453 | 0.840516 | 8.30E-58 | -1.69E-46 |
| MS.gene04986 | MS.gene80055 | 0.81191 | 5.53E-51 | -1.69E-46 |
| MS.gene04986 | MS.gene80056 | 0.8117 | 6.14E-51 | -1.69E-46 |
| MS.gene04986 | MS.gene80234 | -0.804059 | 2.59E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene81230 | -0.813925 | 2.00E-51 | -1.69E-46 |
| MS.gene04986 | MS.gene81559 | -0.810446 | 1.15E-50 | -1.69E-46 |
| MS.gene04986 | MS.gene84712 | 0.843147 | 1.68E-58 | -1.69E-46 |
| MS.gene04986 | MS.gene84947 | 0.816369 | 5.73E-52 | -1.69E-46 |
| MS.gene04986 | MS.gene88888 | 0.805071 | 1.59E-49 | -1.69E-46 |
| MS.gene04986 | MS.gene90011 | 0.809553 | 1.79E-50 | -1.69E-46 |
| MS.gene04986 | MS.gene90518 | 0.826479 | 2.65E-54 | -1.69E-46 |
| MS.gene04986 | MS.gene92392 | 0.815565 | 8.66E-52 | -1.69E-46 |
| MS.gene04986 | MS.gene92394 | 0.806213 | 9.17E-50 | -1.69E-46 |
| MS.gene04986 | MS.gene92396 | 0.831486 | 1.62E-55 | -1.69E-46 |
| MS.gene04986 | MS.gene92589 | 0.828116 | 1.08E-54 | -1.69E-46 |
| MS.gene04986 | MS.gene92808 | 0.831305 | 1.80E-55 | -1.69E-46 |
| MS.gene04986 | MS.gene93192 | -0.82202 | 2.96E-53 | -1.69E-46 |
| MS.gene04986 | MS.gene95929 | 0.823049 | 1.71E-53 | -1.69E-46 |
| MS.gene04986 | MS.gene97158 | 0.800382 | 1.48E-48 | -1.69E-46 |
| MS.gene04986 | MS.gene98219 | 0.815677 | 8.18E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04986 | MS.gene72618 | PPI |
| MS.gene04986 | MS.gene042906 | PPI |
| MS.gene04986 | MS.gene81828 | PPI |
| MS.gene04986 | MS.gene93980 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04986.t1 | MTR_3g065250 | 99.157 | 356 | 3 | 0 | 1 | 356 | 1 | 356 | 0.0 | 728 |
| MS.gene04986.t1 | MTR_6g071070 | 89.326 | 356 | 38 | 0 | 1 | 356 | 1 | 356 | 0.0 | 676 |
| MS.gene04986.t1 | MTR_5g077950 | 87.042 | 355 | 46 | 0 | 2 | 356 | 3 | 357 | 0.0 | 657 |
| MS.gene04986.t1 | MTR_2g021255 | 79.213 | 356 | 74 | 0 | 1 | 356 | 57 | 412 | 0.0 | 612 |
| MS.gene04986.t1 | MTR_2g021242 | 75.562 | 356 | 87 | 0 | 1 | 356 | 57 | 412 | 0.0 | 590 |
| MS.gene04986.t1 | MTR_2g021255 | 78.042 | 337 | 74 | 0 | 1 | 337 | 57 | 393 | 0.0 | 562 |
| MS.gene04986.t1 | MTR_8g062840 | 58.000 | 100 | 29 | 2 | 257 | 356 | 1 | 87 | 2.23e-27 | 105 |
| MS.gene04986.t1 | MTR_2g021248 | 41.429 | 140 | 31 | 4 | 217 | 355 | 10 | 99 | 3.12e-21 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04986.t1 | AT5G37600 | 89.326 | 356 | 38 | 0 | 1 | 356 | 1 | 356 | 0.0 | 679 |
| MS.gene04986.t1 | AT1G66200 | 88.764 | 356 | 40 | 0 | 1 | 356 | 1 | 356 | 0.0 | 677 |
| MS.gene04986.t1 | AT5G16570 | 90.169 | 356 | 35 | 0 | 1 | 356 | 1 | 356 | 0.0 | 676 |
| MS.gene04986.t1 | AT1G66200 | 86.575 | 365 | 40 | 1 | 1 | 356 | 1 | 365 | 0.0 | 669 |
| MS.gene04986.t1 | AT3G17820 | 85.552 | 353 | 51 | 0 | 1 | 353 | 1 | 353 | 0.0 | 644 |
| MS.gene04986.t1 | AT1G48470 | 81.065 | 338 | 64 | 0 | 16 | 353 | 16 | 353 | 0.0 | 598 |
| MS.gene04986.t1 | AT5G35630 | 76.966 | 356 | 82 | 0 | 1 | 356 | 59 | 414 | 0.0 | 596 |
| MS.gene04986.t1 | AT5G35630 | 76.966 | 356 | 82 | 0 | 1 | 356 | 59 | 414 | 0.0 | 596 |
| MS.gene04986.t1 | AT5G35630 | 76.966 | 356 | 82 | 0 | 1 | 356 | 59 | 414 | 0.0 | 596 |
| MS.gene04986.t1 | AT1G66200 | 88.889 | 252 | 28 | 0 | 1 | 252 | 1 | 252 | 5.23e-174 | 484 |
| MS.gene04986.t1 | AT5G16570 | 89.540 | 239 | 25 | 0 | 1 | 239 | 1 | 239 | 8.56e-162 | 452 |
Find 111 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCAAACCTTAATTGGTTT+TGG | 0.177125 | 3.3:+58789459 | None:intergenic |
| CTTTGACCCAAAACCAATTA+AGG | 0.180257 | 3.3:-58789466 | MS.gene04986:intron |
| TGGAAATAGCAAACCTTAAT+TGG | 0.193278 | 3.3:+58789453 | None:intergenic |
| ATGGGTAGCTCGTTACATTT+TGG | 0.226756 | 3.3:-58789657 | MS.gene04986:CDS |
| CTGACATTAACACCTTCTTA+TGG | 0.238098 | 3.3:-58789048 | MS.gene04986:CDS |
| TCTAAATGGATCCTTGAAAA+TGG | 0.250502 | 3.3:+58790946 | None:intergenic |
| ATATTGTTACCCCTTCTAAA+TGG | 0.285580 | 3.3:+58790932 | None:intergenic |
| TCTCTGCTGGTGATGAGATA+TGG | 0.307171 | 3.3:-58789676 | MS.gene04986:CDS |
| ATGTCTCTTGTTGGTGGGAA+TGG | 0.309316 | 3.3:+58790465 | None:intergenic |
| AAGGAGCACATTGCTGCTTA+TGG | 0.324475 | 3.3:-58789112 | MS.gene04986:CDS |
| TTATGCAAAACTAGGGTGAT+TGG | 0.355807 | 3.3:-58789326 | MS.gene04986:intron |
| TGACATTAACACCTTCTTAT+GGG | 0.364511 | 3.3:-58789047 | MS.gene04986:intron |
| AGCTGTGAAGGGTCAGTAAC+TGG | 0.376973 | 3.3:+58791165 | None:intergenic |
| GGCAGCTGCATGTCTCTTGT+TGG | 0.378014 | 3.3:+58790456 | None:intergenic |
| TATGTCAGGATTGGTGGATC+TGG | 0.389845 | 3.3:-58791337 | MS.gene04986:intron |
| GTGGGAATGGGTTCTCCAGC+TGG | 0.392840 | 3.3:+58790478 | None:intergenic |
| AGAATCTAACCATATGTATT+CGG | 0.402832 | 3.3:+58792062 | None:intergenic |
| CAGGATTGGTGGATCTGGTT+TGG | 0.409454 | 3.3:-58791332 | MS.gene04986:CDS |
| TGAAAGCAATTGAGAAGCTT+GGG | 0.410163 | 3.3:-58789144 | MS.gene04986:CDS |
| ATCATGGAAGTAACAACATA+TGG | 0.411129 | 3.3:+58788732 | None:intergenic |
| TCCAGGAGCTTGACCTGTGC+TGG | 0.411245 | 3.3:+58791119 | None:intergenic |
| TAGAAGGGGTAACAATATCT+TGG | 0.417590 | 3.3:-58790927 | MS.gene04986:intron |
| CTGGTGCTCACACAAATTAC+AGG | 0.417888 | 3.3:-58789296 | MS.gene04986:intron |
| AAAGACATCAATTGGCCTCT+TGG | 0.419531 | 3.3:-58790265 | MS.gene04986:CDS |
| CCCTCAGTTGGTATCTCTGC+TGG | 0.420001 | 3.3:-58789689 | MS.gene04986:CDS |
| TTGAAAGCAATTGAGAAGCT+TGG | 0.420009 | 3.3:-58789145 | MS.gene04986:CDS |
| GGCAACGAGCGTAGATTGAC+AGG | 0.421220 | 3.3:-58789085 | MS.gene04986:CDS |
| TGTTGCAGAAAGACATCAAT+TGG | 0.424542 | 3.3:-58790273 | MS.gene04986:CDS |
| TGTCTCTTGTTGGTGGGAAT+GGG | 0.425962 | 3.3:+58790466 | None:intergenic |
| TAGAGGATCACTGAGGTTGC+TGG | 0.429246 | 3.3:-58789501 | MS.gene04986:CDS |
| GCTGGTGCTGACAAGGCATT+TGG | 0.430707 | 3.3:-58789942 | MS.gene04986:CDS |
| ATCAGGATGGCTGAAAATCT+TGG | 0.445473 | 3.3:+58790435 | None:intergenic |
| CTCTGCTGGTGATGAGATAT+GGG | 0.446320 | 3.3:-58789675 | MS.gene04986:CDS |
| CGGTGGTTTCGGAGAGGTCA+AGG | 0.456062 | 3.3:+58792097 | None:intergenic |
| GTTCATTATGTCAGGATTGG+TGG | 0.459850 | 3.3:-58791343 | MS.gene04986:intron |
| GTGGATCTGGTTTGGACTTG+AGG | 0.460278 | 3.3:-58791324 | MS.gene04986:CDS |
| GGCTTATGGTTTCCAGAGAA+TGG | 0.461165 | 3.3:+58788698 | None:intergenic |
| CCTCTTGGTTGGCCAGTTGG+TGG | 0.462411 | 3.3:-58790250 | MS.gene04986:CDS |
| AAATCATCGCCGAATACATA+TGG | 0.465828 | 3.3:-58792071 | MS.gene04986:intron |
| AGCTGCATGTCTCTTGTTGG+TGG | 0.467488 | 3.3:+58790459 | None:intergenic |
| AATGGTGGTGTCTGCAATCA+TGG | 0.470051 | 3.3:+58788716 | None:intergenic |
| TCCAGCACAGGTCAAGCTCC+TGG | 0.473336 | 3.3:-58791120 | MS.gene04986:CDS |
| TTGCAGACACCACCATTCTC+TGG | 0.481231 | 3.3:-58788710 | MS.gene04986:CDS |
| TGGCCTCTTGGTTGGCCAGT+TGG | 0.482222 | 3.3:-58790253 | MS.gene04986:CDS |
| AACTATGATGGTTCCAGCAC+AGG | 0.485647 | 3.3:-58791132 | MS.gene04986:CDS |
| GGTACTTCAGCAACAACATC+AGG | 0.488296 | 3.3:+58790418 | None:intergenic |
| TTATTTGCTTACCCATAAGA+AGG | 0.490705 | 3.3:+58789036 | None:intergenic |
| TTCCACTTGGGAAGCTGTGA+AGG | 0.498232 | 3.3:+58791153 | None:intergenic |
| GATCCTTGAAAATGGCTTGT+GGG | 0.500897 | 3.3:+58790954 | None:intergenic |
| ACATCAATTGGCCTCTTGGT+TGG | 0.505676 | 3.3:-58790261 | MS.gene04986:CDS |
| GCACCAGCACCACAATAGTA+TGG | 0.514601 | 3.3:+58789957 | None:intergenic |
| GGAAGGGACACAGAGAAAGC+AGG | 0.514679 | 3.3:-58788798 | MS.gene04986:CDS |
| ATCAACATCAGTGGAATCAA+TGG | 0.515689 | 3.3:-58789873 | MS.gene04986:CDS |
| CTTCCCAAGTGGAACTATGA+TGG | 0.516245 | 3.3:-58791144 | MS.gene04986:CDS |
| GGAAAGGTTATTTCGAGGAT+AGG | 0.519246 | 3.3:-58788776 | MS.gene04986:CDS |
| CACATTGCTGCTTATGGAGA+AGG | 0.521068 | 3.3:-58789106 | MS.gene04986:CDS |
| TACAAAGCCTGTCTTTATGC+CGG | 0.521155 | 3.3:-58789897 | MS.gene04986:CDS |
| ACCAAGTCTATGAGAGAAGA+TGG | 0.523810 | 3.3:-58789184 | MS.gene04986:CDS |
| TTTCAAGGATCCATTTAGAA+GGG | 0.527758 | 3.3:-58790942 | MS.gene04986:CDS |
| GTTGATGCCGGCATAAAGAC+AGG | 0.529739 | 3.3:+58789890 | None:intergenic |
| GGACCATACTATTGTGGTGC+TGG | 0.534606 | 3.3:-58789960 | MS.gene04986:CDS |
| TATGGATCCATGTTAGATGA+TGG | 0.538723 | 3.3:+58788750 | None:intergenic |
| GCTGCATGTCTCTTGTTGGT+GGG | 0.539293 | 3.3:+58790460 | None:intergenic |
| GGTCCAGGAAAACCACCAAC+TGG | 0.540153 | 3.3:+58790238 | None:intergenic |
| TTCCAAGTTGGTCCCTCAGT+TGG | 0.551503 | 3.3:-58789701 | MS.gene04986:CDS |
| CGTGGTGCGTCGATTAGAGT+TGG | 0.552602 | 3.3:-58788819 | MS.gene04986:CDS |
| ATAACTTCACTATCTTCTCC+AGG | 0.553474 | 3.3:+58791102 | None:intergenic |
| GATCACTGAGGTTGCTGGTG+TGG | 0.554625 | 3.3:-58789496 | MS.gene04986:CDS |
| GATTCCACTGATGTTGATGC+CGG | 0.555187 | 3.3:+58789878 | None:intergenic |
| AGCAGGGAAAGGTTATTTCG+AGG | 0.555891 | 3.3:-58788781 | MS.gene04986:CDS |
| AAGGTTATTTCGAGGATAGG+AGG | 0.561130 | 3.3:-58788773 | MS.gene04986:CDS |
| GGATCCTTGAAAATGGCTTG+TGG | 0.562735 | 3.3:+58790953 | None:intergenic |
| TGGACTTGAGGAGCAAAGCA+AGG | 0.567464 | 3.3:-58791312 | MS.gene04986:CDS |
| ACCATCTTCTCTCATAGACT+TGG | 0.571470 | 3.3:+58789183 | None:intergenic |
| GGAACCATCATAGTTCCACT+TGG | 0.572427 | 3.3:+58791140 | None:intergenic |
| ATTGATGTCTTTCTGCAACA+AGG | 0.574318 | 3.3:+58790276 | None:intergenic |
| TTGTGGTGCTGGTGCTGACA+AGG | 0.575827 | 3.3:-58789949 | MS.gene04986:CDS |
| TTGCTCCAACTTACTTGACC+AGG | 0.576512 | 3.3:+58789840 | None:intergenic |
| TACCAACTGAGGGACCAACT+TGG | 0.582203 | 3.3:+58789699 | None:intergenic |
| GTGCGTCGATTAGAGTTGGA+AGG | 0.584013 | 3.3:-58788815 | MS.gene04986:CDS |
| ATGTAGTGGGAATTCCAAGT+TGG | 0.586154 | 3.3:-58789713 | MS.gene04986:intron |
| TAGGGTGATTGGAATGGTGC+TGG | 0.586935 | 3.3:-58789315 | MS.gene04986:CDS |
| TGTGATGCGTACACTCCAGC+TGG | 0.588646 | 3.3:-58790493 | MS.gene04986:CDS |
| TTCAAGGATCCATTTAGAAG+GGG | 0.590326 | 3.3:-58790941 | MS.gene04986:CDS |
| ATCAATGGTGAAGTGATGCC+TGG | 0.592881 | 3.3:-58789858 | MS.gene04986:CDS |
| TCCACTTGGGAAGCTGTGAA+GGG | 0.596916 | 3.3:+58791154 | None:intergenic |
| GACACAGAGAAAGCAGGGAA+AGG | 0.598045 | 3.3:-58788792 | MS.gene04986:CDS |
| GAAGGGTCAGTAACTGGACC+TGG | 0.599215 | 3.3:+58791171 | None:intergenic |
| CAATAGGGACCATACTATTG+TGG | 0.601480 | 3.3:-58789966 | MS.gene04986:intron |
| ACCCTTCACAGCTTCCCAAG+TGG | 0.605168 | 3.3:-58791155 | MS.gene04986:CDS |
| GGACTTGAGGAGCAAAGCAA+GGG | 0.609551 | 3.3:-58791311 | MS.gene04986:intron |
| CAACTCTAATCGACGCACCA+CGG | 0.611739 | 3.3:+58788820 | None:intergenic |
| TAGGAGGCCATCATCTAACA+TGG | 0.627480 | 3.3:-58788757 | MS.gene04986:CDS |
| CAAGGTTGATGAGATCTGAA+AGG | 0.633414 | 3.3:+58792115 | None:intergenic |
| GAAGGGACACAGAGAAAGCA+GGG | 0.638354 | 3.3:-58788797 | MS.gene04986:CDS |
| CAAAACTAGGGTGATTGGAA+TGG | 0.644331 | 3.3:-58789321 | MS.gene04986:intron |
| TGCGTCGATTAGAGTTGGAA+GGG | 0.644595 | 3.3:-58788814 | MS.gene04986:CDS |
| GAACCATCATAGTTCCACTT+GGG | 0.652093 | 3.3:+58791141 | None:intergenic |
| TTGAAGGGTGTTGCAAACCG+TGG | 0.663350 | 3.3:-58788837 | MS.gene04986:intron |
| TTATGGTTTCCAGAGAATGG+TGG | 0.667248 | 3.3:+58788701 | None:intergenic |
| ACCAGCAGAGATACCAACTG+AGG | 0.670459 | 3.3:+58789688 | None:intergenic |
| CCACCAACTGGCCAACCAAG+AGG | 0.671238 | 3.3:+58790250 | None:intergenic |
| TATGCCGGCATCAACATCAG+TGG | 0.676060 | 3.3:-58789882 | MS.gene04986:CDS |
| CTTCAGCAACAACATCAGGA+TGG | 0.677550 | 3.3:+58790422 | None:intergenic |
| CCAGCAGAGATACCAACTGA+GGG | 0.678315 | 3.3:+58789689 | None:intergenic |
| AATGTGAGTCAACAATGTCA+CGG | 0.681181 | 3.3:+58789919 | None:intergenic |
| GCAACGAGCGTAGATTGACA+GGG | 0.702514 | 3.3:-58789084 | MS.gene04986:CDS |
| ATGTTGTTGCTGAAGTACCA+TGG | 0.706598 | 3.3:-58790414 | MS.gene04986:intron |
| GAAGCTTGGGAAGAAGCACA+AGG | 0.711059 | 3.3:-58789131 | MS.gene04986:CDS |
| AAGTCTATGAGAGAAGATGG+TGG | 0.739470 | 3.3:-58789181 | MS.gene04986:CDS |
| GTTCCAATAGAGGATCACTG+AGG | 0.789699 | 3.3:-58789508 | MS.gene04986:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAATATATACATAATTA+AGG | + | chr3.3:58789794-58789813 | None:intergenic | 10.0% |
| !! | ATGAATAAAAAAAATAATCA+TGG | + | chr3.3:58788977-58788996 | None:intergenic | 10.0% |
| !!! | ATTATGATTTTTACTTATTT+GGG | - | chr3.3:58789831-58789850 | MS.gene04986:intron | 10.0% |
| !!! | TATTATGATTTTTACTTATT+TGG | - | chr3.3:58789830-58789849 | MS.gene04986:intron | 10.0% |
| !! | AATGAACATAAATTAATCAA+AGG | + | chr3.3:58789468-58789487 | None:intergenic | 15.0% |
| !! | ATAACATAAAACTATTTGTT+AGG | + | chr3.3:58790739-58790758 | None:intergenic | 15.0% |
| !! | ATGAACATAAATTAATCAAA+GGG | + | chr3.3:58789467-58789486 | None:intergenic | 15.0% |
| !! | GTAGTAAATAATAATGATAA+AGG | + | chr3.3:58791028-58791047 | None:intergenic | 15.0% |
| !!! | AAAATATAAATGGCTTTTTT+TGG | - | chr3.3:58789618-58789637 | MS.gene04986:intron | 15.0% |
| !!! | AAATATAAATGGCTTTTTTT+GGG | - | chr3.3:58789619-58789638 | MS.gene04986:intron | 15.0% |
| !!! | ATAGATTTTTAAGTTGATTT+TGG | - | chr3.3:58789110-58789129 | MS.gene04986:CDS | 15.0% |
| !!! | ATTTTATAATTTGCTCAATA+GGG | - | chr3.3:58790843-58790862 | MS.gene04986:intron | 15.0% |
| !!! | ATTTTTTTTATGCAAAACTA+GGG | - | chr3.3:58791491-58791510 | MS.gene04986:intron | 15.0% |
| !!! | CTATAGTTGAATATTTTATA+TGG | - | chr3.3:58791581-58791600 | MS.gene04986:intron | 15.0% |
| !!! | TAGATTTTTAAGTTGATTTT+GGG | - | chr3.3:58789111-58789130 | MS.gene04986:CDS | 15.0% |
| !!! | TAGTAATTTTGATACATTTA+AGG | + | chr3.3:58789996-58790015 | None:intergenic | 15.0% |
| !!! | TATTGTTTTTTTAATGTAGT+GGG | - | chr3.3:58791098-58791117 | MS.gene04986:CDS | 15.0% |
| !!! | TATTTTATAATTTGCTCAAT+AGG | - | chr3.3:58790842-58790861 | MS.gene04986:intron | 15.0% |
| !!! | TATTTTTTTTATGCAAAACT+AGG | - | chr3.3:58791490-58791509 | MS.gene04986:intron | 15.0% |
| !!! | TTATGATTTTTACTTATTTG+GGG | - | chr3.3:58789832-58789851 | MS.gene04986:intron | 15.0% |
| !!! | TTTTCTTTTTTTTCTTTTCT+TGG | + | chr3.3:58791830-58791849 | None:intergenic | 15.0% |
| !!! | TTTTTTGTTTGGAATAAAAT+TGG | - | chr3.3:58789256-58789275 | MS.gene04986:intron | 15.0% |
| !! | AACAAAGAAAATTAGTTAGT+TGG | + | chr3.3:58791293-58791312 | None:intergenic | 20.0% |
| !! | AAGAATTTAATATCATGGTT+TGG | + | chr3.3:58789400-58789419 | None:intergenic | 20.0% |
| !! | ATATAGACAAGTATATCAAT+TGG | + | chr3.3:58791451-58791470 | None:intergenic | 20.0% |
| !! | GAGTTTAATTAAAAACAAGA+GGG | + | chr3.3:58790303-58790322 | None:intergenic | 20.0% |
| !! | TAATTTATGTTCATTATGTC+AGG | - | chr3.3:58789473-58789492 | MS.gene04986:CDS | 20.0% |
| !! | TACACAATCATATAAGAAAA+TGG | - | chr3.3:58790672-58790691 | MS.gene04986:intron | 20.0% |
| !! | TATAGACAAGTATATCAATT+GGG | + | chr3.3:58791450-58791469 | None:intergenic | 20.0% |
| !! | TGAACATAAATTAATCAAAG+GGG | + | chr3.3:58789466-58789485 | None:intergenic | 20.0% |
| !! | TGAGTTTAATTAAAAACAAG+AGG | + | chr3.3:58790304-58790323 | None:intergenic | 20.0% |
| !!! | AATGACTTTGTTTTTTTGTT+TGG | - | chr3.3:58789245-58789264 | MS.gene04986:intron | 20.0% |
| !!! | ATAAAACTATTTGTTAGGTA+AGG | + | chr3.3:58790734-58790753 | None:intergenic | 20.0% |
| !!! | CTATTGTTTTTTTAATGTAG+TGG | - | chr3.3:58791097-58791116 | MS.gene04986:CDS | 20.0% |
| !!! | TAAAACTATTTGTTAGGTAA+GGG | + | chr3.3:58790733-58790752 | None:intergenic | 20.0% |
| !!! | TATTTTGTTCTCTATTTTCT+TGG | - | chr3.3:58789806-58789825 | MS.gene04986:intron | 20.0% |
| !!! | TCTTGTTTTTAATTAAACTC+AGG | - | chr3.3:58790303-58790322 | MS.gene04986:intron | 20.0% |
| !!! | TTGAATATTTTATATGGTCA+TGG | - | chr3.3:58791587-58791606 | MS.gene04986:intron | 20.0% |
| !!! | TTTTTTGTTGTTCTAATTGT+TGG | - | chr3.3:58791949-58791968 | MS.gene04986:intron | 20.0% |
| ! | AAAAACAAATGTTACAGACT+AGG | + | chr3.3:58791929-58791948 | None:intergenic | 25.0% |
| ! | AAGTATATCAATTGGGTTAA+AGG | + | chr3.3:58791443-58791462 | None:intergenic | 25.0% |
| ! | AATAGGTCAAAATCAAAAAG+AGG | + | chr3.3:58791246-58791265 | None:intergenic | 25.0% |
| ! | AGAACAGAAAAAATCATCAT+GGG | + | chr3.3:58789173-58789192 | None:intergenic | 25.0% |
| ! | AGAATAACTTGATTCAAACA+AGG | + | chr3.3:58791398-58791417 | None:intergenic | 25.0% |
| ! | AGAATCTAACCATATGTATT+CGG | + | chr3.3:58788765-58788784 | None:intergenic | 25.0% |
| ! | CGTACAAGAATTTAATATCA+TGG | + | chr3.3:58789405-58789424 | None:intergenic | 25.0% |
| ! | GAACATAAATTAATCAAAGG+GGG | + | chr3.3:58789465-58789484 | None:intergenic | 25.0% |
| ! | GAATAACTTGATTCAAACAA+GGG | + | chr3.3:58791397-58791416 | None:intergenic | 25.0% |
| ! | TCTCATATTATTACCACTAA+TGG | + | chr3.3:58790703-58790722 | None:intergenic | 25.0% |
| ! | TTGTCTCTTGTTAATTAGTT+TGG | - | chr3.3:58790061-58790080 | MS.gene04986:intron | 25.0% |
| !! | TTGTTGTATGATTTGTGATT+AGG | - | chr3.3:58790503-58790522 | MS.gene04986:intron | 25.0% |
| !!! | GATGTTTTGTTCTGTTTTTT+AGG | - | chr3.3:58789141-58789160 | MS.gene04986:CDS | 25.0% |
| !!! | GGTGAATTTTTTTTTGTCAT+TGG | - | chr3.3:58790797-58790816 | MS.gene04986:intron | 25.0% |
| !!! | TTTAATATCATGGTTTGGTT+TGG | + | chr3.3:58789395-58789414 | None:intergenic | 25.0% |
| !!! | TTTGATTTTGACCTATTGAA+TGG | - | chr3.3:58791249-58791268 | MS.gene04986:intron | 25.0% |
| AAAGGTTAAAATGAGTGCAT+AGG | + | chr3.3:58791010-58791029 | None:intergenic | 30.0% | |
| AACACTAACTTCCATTCAAT+AGG | + | chr3.3:58791263-58791282 | None:intergenic | 30.0% | |
| AAGAGAGAGAAAATAATCAC+TGG | + | chr3.3:58789038-58789057 | None:intergenic | 30.0% | |
| AGAATAAACAAGTGGCAAAA+AGG | + | chr3.3:58790469-58790488 | None:intergenic | 30.0% | |
| AGTAGCAAAAAAAGATACCA+TGG | + | chr3.3:58790430-58790449 | None:intergenic | 30.0% | |
| ATACATTTAAGGACTAACGA+CGG | + | chr3.3:58789985-58790004 | None:intergenic | 30.0% | |
| ATACGTAGTAGACTTGAAAT+CGG | + | chr3.3:58791877-58791896 | None:intergenic | 30.0% | |
| ATATTGTTACCCCTTCTAAA+TGG | + | chr3.3:58789895-58789914 | None:intergenic | 30.0% | |
| ATCAGAACAGAATAAACAAG+TGG | + | chr3.3:58790477-58790496 | None:intergenic | 30.0% | |
| ATCATGGAAGTAACAACATA+TGG | + | chr3.3:58792095-58792114 | None:intergenic | 30.0% | |
| CAGAACAGAAAAAATCATCA+TGG | + | chr3.3:58789174-58789193 | None:intergenic | 30.0% | |
| CAGATGATTCAATATACAAC+AGG | + | chr3.3:58790219-58790238 | None:intergenic | 30.0% | |
| GAAAATTAGTTAGTTGGAGA+AGG | + | chr3.3:58791287-58791306 | None:intergenic | 30.0% | |
| TATGTTCATTATGTCAGGAT+TGG | - | chr3.3:58789478-58789497 | MS.gene04986:CDS | 30.0% | |
| TCTAAATGGATCCTTGAAAA+TGG | + | chr3.3:58789881-58789900 | None:intergenic | 30.0% | |
| TGACATTAACACCTTCTTAT+GGG | - | chr3.3:58791777-58791796 | MS.gene04986:intron | 30.0% | |
| TGGAAATAGCAAACCTTAAT+TGG | + | chr3.3:58791374-58791393 | None:intergenic | 30.0% | |
| TTATTTGCTTACCCATAAGA+AGG | + | chr3.3:58791791-58791810 | None:intergenic | 30.0% | |
| TTTCAAGGATCCATTTAGAA+GGG | - | chr3.3:58789882-58789901 | MS.gene04986:CDS | 30.0% | |
| ! | ATGATTCTAGAAAAACGTTG+CGG | + | chr3.3:58788939-58788958 | None:intergenic | 30.0% |
| ! | ATTTCAAGTCTACTACGTAT+GGG | - | chr3.3:58791877-58791896 | MS.gene04986:intron | 30.0% |
| ! | CTTTGTTTATGTTCCAATAG+AGG | - | chr3.3:58791306-58791325 | MS.gene04986:intron | 30.0% |
| ! | GTATGATTTGTGATTAGGTA+TGG | - | chr3.3:58790508-58790527 | MS.gene04986:intron | 30.0% |
| ! | TCAAAATCAAAAAGAGGTGT+TGG | + | chr3.3:58791240-58791259 | None:intergenic | 30.0% |
| !! | GATTTTTACTTATTTGGGGT+TGG | - | chr3.3:58789836-58789855 | MS.gene04986:intron | 30.0% |
| !! | TAGCAAACCTTAATTGGTTT+TGG | + | chr3.3:58791368-58791387 | None:intergenic | 30.0% |
| !! | TTTTCAAGGATCCATTTAGA+AGG | - | chr3.3:58789881-58789900 | MS.gene04986:CDS | 30.0% |
| !! | TTTTGTTTGTTAGCATGTGA+GGG | + | chr3.3:58788798-58788817 | None:intergenic | 30.0% |
| !! | TTTTTGTTTGTTAGCATGTG+AGG | + | chr3.3:58788799-58788818 | None:intergenic | 30.0% |
| !!! | AGCAAACCTTAATTGGTTTT+GGG | + | chr3.3:58791367-58791386 | None:intergenic | 30.0% |
| !!! | TAAGTTGATTTTGGGATATG+AGG | - | chr3.3:58789119-58789138 | MS.gene04986:CDS | 30.0% |
| !!! | TGTTTTTTGATGGTTGAGTA+TGG | - | chr3.3:58789198-58789217 | MS.gene04986:intron | 30.0% |
| AAATCATCGCCGAATACATA+TGG | - | chr3.3:58788753-58788772 | MS.gene04986:CDS | 35.0% | |
| AATGTGAGTCAACAATGTCA+CGG | + | chr3.3:58790908-58790927 | None:intergenic | 35.0% | |
| ATAACTTCACTATCTTCTCC+AGG | + | chr3.3:58789725-58789744 | None:intergenic | 35.0% | |
| ATCAACATCAGTGGAATCAA+TGG | - | chr3.3:58790951-58790970 | MS.gene04986:CDS | 35.0% | |
| ATCAATTGGGTTAAAGGAGT+TGG | + | chr3.3:58791437-58791456 | None:intergenic | 35.0% | |
| ATTGATGTCTTTCTGCAACA+AGG | + | chr3.3:58790551-58790570 | None:intergenic | 35.0% | |
| CCAAAAGACAAGTTCAAACT+TGG | + | chr3.3:58790779-58790798 | None:intergenic | 35.0% | |
| CTGACATTAACACCTTCTTA+TGG | - | chr3.3:58791776-58791795 | MS.gene04986:intron | 35.0% | |
| CTTTGACCCAAAACCAATTA+AGG | - | chr3.3:58791358-58791377 | MS.gene04986:intron | 35.0% | |
| GTGTGTCTTGGAAAACATAT+TGG | + | chr3.3:58790091-58790110 | None:intergenic | 35.0% | |
| TAACTTGATTCAAACAAGGG+TGG | + | chr3.3:58791394-58791413 | None:intergenic | 35.0% | |
| TAGAAGGGGTAACAATATCT+TGG | - | chr3.3:58789897-58789916 | MS.gene04986:CDS | 35.0% | |
| TATGGATCCATGTTAGATGA+TGG | + | chr3.3:58792077-58792096 | None:intergenic | 35.0% | |
| TATTGTACTTAGTGGTAGAC+TGG | + | chr3.3:58789362-58789381 | None:intergenic | 35.0% | |
| TGAAAGCAATTGAGAAGCTT+GGG | - | chr3.3:58791680-58791699 | MS.gene04986:intron | 35.0% | |
| TGTTGCAGAAAGACATCAAT+TGG | - | chr3.3:58790551-58790570 | MS.gene04986:intron | 35.0% | |
| TTATGCAAAACTAGGGTGAT+TGG | - | chr3.3:58791498-58791517 | MS.gene04986:intron | 35.0% | |
| TTCAAGGATCCATTTAGAAG+GGG | - | chr3.3:58789883-58789902 | MS.gene04986:CDS | 35.0% | |
| TTGAAAGCAATTGAGAAGCT+TGG | - | chr3.3:58791679-58791698 | MS.gene04986:intron | 35.0% | |
| ! | AGTAGTGTTTTTCGTACGTA+CGG | + | chr3.3:58788871-58788890 | None:intergenic | 35.0% |
| ! | CCAAGTTTGAACTTGTCTTT+TGG | - | chr3.3:58790776-58790795 | MS.gene04986:intron | 35.0% |
| ! | GATTTCAAGTCTACTACGTA+TGG | - | chr3.3:58791876-58791895 | MS.gene04986:intron | 35.0% |
| ! | TTTCAAGTCTACTACGTATG+GGG | - | chr3.3:58791878-58791897 | MS.gene04986:intron | 35.0% |
| !! | CTTGGTGCTACAGTATTATA+AGG | + | chr3.3:58791626-58791645 | None:intergenic | 35.0% |
| !! | TATCATGGTTTGGTTTGGTT+TGG | + | chr3.3:58789390-58789409 | None:intergenic | 35.0% |
| !! | TGGTTTGGTATTGTACTTAG+TGG | + | chr3.3:58789370-58789389 | None:intergenic | 35.0% |
| !!! | CTTAATTGGTTTTGGGTCAA+AGG | + | chr3.3:58791360-58791379 | None:intergenic | 35.0% |
| !!! | GTTCTGACTCTGTTTTTTGA+TGG | - | chr3.3:58789188-58789207 | MS.gene04986:CDS | 35.0% |
| AAACATCATCGAGTGTGTCT+TGG | + | chr3.3:58790103-58790122 | None:intergenic | 40.0% | |
| AAGTCTATGAGAGAAGATGG+TGG | - | chr3.3:58791643-58791662 | MS.gene04986:intron | 40.0% | |
| ACCAAGTCTATGAGAGAAGA+TGG | - | chr3.3:58791640-58791659 | MS.gene04986:intron | 40.0% | |
| ACCATCTTCTCTCATAGACT+TGG | + | chr3.3:58791644-58791663 | None:intergenic | 40.0% | |
| ATCAGGATGGCTGAAAATCT+TGG | + | chr3.3:58790392-58790411 | None:intergenic | 40.0% | |
| CAAAACTAGGGTGATTGGAA+TGG | - | chr3.3:58791503-58791522 | MS.gene04986:intron | 40.0% | |
| CAATAGGGACCATACTATTG+TGG | - | chr3.3:58790858-58790877 | MS.gene04986:intron | 40.0% | |
| GAAAATGGTGTGACCATTAG+TGG | - | chr3.3:58790687-58790706 | MS.gene04986:intron | 40.0% | |
| GAACCATCATAGTTCCACTT+GGG | + | chr3.3:58789686-58789705 | None:intergenic | 40.0% | |
| GTTCATTATGTCAGGATTGG+TGG | - | chr3.3:58789481-58789500 | MS.gene04986:CDS | 40.0% | |
| TACAAAGCCTGTCTTTATGC+CGG | - | chr3.3:58790927-58790946 | MS.gene04986:intron | 40.0% | |
| TGTTGTTCTAATTGTTGGCG+TGG | - | chr3.3:58791954-58791973 | MS.gene04986:intron | 40.0% | |
| TTATGGTTTCCAGAGAATGG+TGG | + | chr3.3:58792126-58792145 | None:intergenic | 40.0% | |
| TTCAAGTCTACTACGTATGG+GGG | - | chr3.3:58791879-58791898 | MS.gene04986:intron | 40.0% | |
| TTCTGATCCCTAAATGTGTG+AGG | + | chr3.3:58790163-58790182 | None:intergenic | 40.0% | |
| ! | AAAGACATCAATTGGCCTCT+TGG | - | chr3.3:58790559-58790578 | MS.gene04986:intron | 40.0% |
| ! | AAGGTTATTTCGAGGATAGG+AGG | - | chr3.3:58792051-58792070 | MS.gene04986:intron | 40.0% |
| ! | ATGGGTAGCTCGTTACATTT+TGG | - | chr3.3:58791167-58791186 | MS.gene04986:CDS | 40.0% |
| ! | ATGTAGTGGGAATTCCAAGT+TGG | - | chr3.3:58791111-58791130 | MS.gene04986:CDS | 40.0% |
| ! | ATGTTGTTGCTGAAGTACCA+TGG | - | chr3.3:58790410-58790429 | MS.gene04986:intron | 40.0% |
| ! | ATTCTAGAAAAACGTTGCGG+TGG | + | chr3.3:58788936-58788955 | None:intergenic | 40.0% |
| ! | GATCCTTGAAAATGGCTTGT+GGG | + | chr3.3:58789873-58789892 | None:intergenic | 40.0% |
| ! | GATGATTTTCTCGGTGGTTT+CGG | + | chr3.3:58788741-58788760 | None:intergenic | 40.0% |
| ! | GGAAAGGTTATTTCGAGGAT+AGG | - | chr3.3:58792048-58792067 | MS.gene04986:intron | 40.0% |
| ! | GTATTCGGCGATGATTTTCT+CGG | + | chr3.3:58788750-58788769 | None:intergenic | 40.0% |
| ! | TGAAAGTGAGTTTTCACCTG+AGG | + | chr3.3:58790610-58790629 | None:intergenic | 40.0% |
| !! | CAAGGTTGATGAGATCTGAA+AGG | + | chr3.3:58788712-58788731 | None:intergenic | 40.0% |
| !! | CGTGGCTTGTGTTATTTGAA+GGG | - | chr3.3:58791972-58791991 | MS.gene04986:intron | 40.0% |
| !! | TGGTTTGGTTTGGTTTGGTT+TGG | + | chr3.3:58789385-58789404 | None:intergenic | 40.0% |
| AACTATGATGGTTCCAGCAC+AGG | - | chr3.3:58789692-58789711 | MS.gene04986:CDS | 45.0% | |
| AGTGGTAGACTGGTAGGTTT+GGG | + | chr3.3:58789352-58789371 | None:intergenic | 45.0% | |
| ATCAATGGTGAAGTGATGCC+TGG | - | chr3.3:58790966-58790985 | MS.gene04986:intron | 45.0% | |
| ATGTGTGAGGCGTGTCAATA+TGG | + | chr3.3:58790150-58790169 | None:intergenic | 45.0% | |
| CAACCTCAGTGATCCTCTAT+TGG | + | chr3.3:58791322-58791341 | None:intergenic | 45.0% | |
| CTGGTGCTCACACAAATTAC+AGG | - | chr3.3:58791528-58791547 | MS.gene04986:intron | 45.0% | |
| CTTCAGCAACAACATCAGGA+TGG | + | chr3.3:58790405-58790424 | None:intergenic | 45.0% | |
| CTTCCCAAGTGGAACTATGA+TGG | - | chr3.3:58789680-58789699 | MS.gene04986:CDS | 45.0% | |
| GATTCCACTGATGTTGATGC+CGG | + | chr3.3:58790949-58790968 | None:intergenic | 45.0% | |
| GGAACCATCATAGTTCCACT+TGG | + | chr3.3:58789687-58789706 | None:intergenic | 45.0% | |
| GGATCCTTGAAAATGGCTTG+TGG | + | chr3.3:58789874-58789893 | None:intergenic | 45.0% | |
| GGTACTTCAGCAACAACATC+AGG | + | chr3.3:58790409-58790428 | None:intergenic | 45.0% | |
| GTACTTAGTGGTAGACTGGT+AGG | + | chr3.3:58789358-58789377 | None:intergenic | 45.0% | |
| GTTCCAATAGAGGATCACTG+AGG | - | chr3.3:58791316-58791335 | MS.gene04986:CDS | 45.0% | |
| TAGGAGGCCATCATCTAACA+TGG | - | chr3.3:58792067-58792086 | MS.gene04986:intron | 45.0% | |
| TAGTGGTAGACTGGTAGGTT+TGG | + | chr3.3:58789353-58789372 | None:intergenic | 45.0% | |
| TCAAGTCTACTACGTATGGG+GGG | - | chr3.3:58791880-58791899 | MS.gene04986:intron | 45.0% | |
| TGACACGCCTCACACATTTA+GGG | - | chr3.3:58790153-58790172 | MS.gene04986:intron | 45.0% | |
| TGATGCCTGGTCAAGTAAGT+TGG | - | chr3.3:58790979-58790998 | MS.gene04986:intron | 45.0% | |
| TTGACACGCCTCACACATTT+AGG | - | chr3.3:58790152-58790171 | MS.gene04986:intron | 45.0% | |
| TTGCTCCAACTTACTTGACC+AGG | + | chr3.3:58790987-58791006 | None:intergenic | 45.0% | |
| ! | AAGGAGCACATTGCTGCTTA+TGG | - | chr3.3:58791712-58791731 | MS.gene04986:intron | 45.0% |
| ! | AATGGTGGTGTCTGCAATCA+TGG | + | chr3.3:58792111-58792130 | None:intergenic | 45.0% |
| ! | ACATCAATTGGCCTCTTGGT+TGG | - | chr3.3:58790563-58790582 | MS.gene04986:intron | 45.0% |
| ! | AGCAGGGAAAGGTTATTTCG+AGG | - | chr3.3:58792043-58792062 | MS.gene04986:intron | 45.0% |
| ! | ATGTCTCTTGTTGGTGGGAA+TGG | + | chr3.3:58790362-58790381 | None:intergenic | 45.0% |
| ! | CACATTGCTGCTTATGGAGA+AGG | - | chr3.3:58791718-58791737 | MS.gene04986:intron | 45.0% |
| ! | CTCTGCTGGTGATGAGATAT+GGG | - | chr3.3:58791149-58791168 | MS.gene04986:CDS | 45.0% |
| ! | GGTAGCTCGTTACATTTTGG+AGG | - | chr3.3:58791170-58791189 | MS.gene04986:CDS | 45.0% |
| ! | TATGTCAGGATTGGTGGATC+TGG | - | chr3.3:58789487-58789506 | MS.gene04986:CDS | 45.0% |
| ! | TCTCTGCTGGTGATGAGATA+TGG | - | chr3.3:58791148-58791167 | MS.gene04986:CDS | 45.0% |
| ! | TGTCTCTTGTTGGTGGGAAT+GGG | + | chr3.3:58790361-58790380 | None:intergenic | 45.0% |
| !! | CGTTACATTTTGGAGGTAGG+TGG | - | chr3.3:58791177-58791196 | MS.gene04986:CDS | 45.0% |
| !! | GCGTGGCTTGTGTTATTTGA+AGG | - | chr3.3:58791971-58791990 | MS.gene04986:intron | 45.0% |
| !! | GCTCGTTACATTTTGGAGGT+AGG | - | chr3.3:58791174-58791193 | MS.gene04986:CDS | 45.0% |
| !! | TGCGTCGATTAGAGTTGGAA+GGG | - | chr3.3:58792010-58792029 | MS.gene04986:intron | 45.0% |
| !! | TAATTTATTGAAAATATAAA+TGG | - | chr3.3:58789608-58789627 | MS.gene04986:intron | 5.0% |
| ACCAGCAGAGATACCAACTG+AGG | + | chr3.3:58791139-58791158 | None:intergenic | 50.0% | |
| AGCTGCATGTCTCTTGTTGG+TGG | + | chr3.3:58790368-58790387 | None:intergenic | 50.0% | |
| AGCTGTGAAGGGTCAGTAAC+TGG | + | chr3.3:58789662-58789681 | None:intergenic | 50.0% | |
| CAACTCTAATCGACGCACCA+CGG | + | chr3.3:58792007-58792026 | None:intergenic | 50.0% | |
| CAAGTCTACTACGTATGGGG+GGG | - | chr3.3:58791881-58791900 | MS.gene04986:intron | 50.0% | |
| CCAGCAGAGATACCAACTGA+GGG | + | chr3.3:58791138-58791157 | None:intergenic | 50.0% | |
| GAAGGGACACAGAGAAAGCA+GGG | - | chr3.3:58792027-58792046 | MS.gene04986:intron | 50.0% | |
| GACACAGAGAAAGCAGGGAA+AGG | - | chr3.3:58792032-58792051 | MS.gene04986:intron | 50.0% | |
| GCAACGAGCGTAGATTGACA+GGG | - | chr3.3:58791740-58791759 | MS.gene04986:intron | 50.0% | |
| GCACCAGCACCACAATAGTA+TGG | + | chr3.3:58790870-58790889 | None:intergenic | 50.0% | |
| GCTGCATGTCTCTTGTTGGT+GGG | + | chr3.3:58790367-58790386 | None:intergenic | 50.0% | |
| GGACCATACTATTGTGGTGC+TGG | - | chr3.3:58790864-58790883 | MS.gene04986:intron | 50.0% | |
| GGACTTGAGGAGCAAAGCAA+GGG | - | chr3.3:58789513-58789532 | MS.gene04986:intron | 50.0% | |
| GTTGATGCCGGCATAAAGAC+AGG | + | chr3.3:58790937-58790956 | None:intergenic | 50.0% | |
| TACCAACTGAGGGACCAACT+TGG | + | chr3.3:58791128-58791147 | None:intergenic | 50.0% | |
| TAGAGGATCACTGAGGTTGC+TGG | - | chr3.3:58791323-58791342 | MS.gene04986:CDS | 50.0% | |
| TAGGGTGATTGGAATGGTGC+TGG | - | chr3.3:58791509-58791528 | MS.gene04986:intron | 50.0% | |
| TATGCCGGCATCAACATCAG+TGG | - | chr3.3:58790942-58790961 | MS.gene04986:CDS | 50.0% | |
| TCCACTTGGGAAGCTGTGAA+GGG | + | chr3.3:58789673-58789692 | None:intergenic | 50.0% | |
| TGGACTTGAGGAGCAAAGCA+AGG | - | chr3.3:58789512-58789531 | MS.gene04986:intron | 50.0% | |
| TTCCACTTGGGAAGCTGTGA+AGG | + | chr3.3:58789674-58789693 | None:intergenic | 50.0% | |
| TTGCAGACACCACCATTCTC+TGG | - | chr3.3:58792114-58792133 | MS.gene04986:CDS | 50.0% | |
| ! | CAGGATTGGTGGATCTGGTT+TGG | - | chr3.3:58789492-58789511 | MS.gene04986:CDS | 50.0% |
| ! | GAAGCTTGGGAAGAAGCACA+AGG | - | chr3.3:58791693-58791712 | MS.gene04986:intron | 50.0% |
| ! | TGAGTTTTCACCTGAGGTCC+AGG | + | chr3.3:58790604-58790623 | None:intergenic | 50.0% |
| ! | TTCGGCGATGATTTTCTCGG+TGG | + | chr3.3:58788747-58788766 | None:intergenic | 50.0% |
| ! | TTTTCTCGGTGGTTTCGGAG+AGG | + | chr3.3:58788736-58788755 | None:intergenic | 50.0% |
| !! | CAGCCCACAAGCCATTTTCA+AGG | - | chr3.3:58789867-58789886 | MS.gene04986:CDS | 50.0% |
| !! | GTGCGTCGATTAGAGTTGGA+AGG | - | chr3.3:58792009-58792028 | MS.gene04986:intron | 50.0% |
| !! | GTGGATCTGGTTTGGACTTG+AGG | - | chr3.3:58789500-58789519 | MS.gene04986:CDS | 50.0% |
| !! | TTCCAAGTTGGTCCCTCAGT+TGG | - | chr3.3:58791123-58791142 | MS.gene04986:CDS | 50.0% |
| !! | TTGAAGGGTGTTGCAAACCG+TGG | - | chr3.3:58791987-58792006 | MS.gene04986:intron | 50.0% |
| !! | TTTTGGGTGCAGACTCTACC+AGG | - | chr3.3:58789635-58789654 | MS.gene04986:intron | 50.0% |
| ACCCTTCACAGCTTCCCAAG+TGG | - | chr3.3:58789669-58789688 | MS.gene04986:CDS | 55.0% | |
| GAAGGGTCAGTAACTGGACC+TGG | + | chr3.3:58789656-58789675 | None:intergenic | 55.0% | |
| GATCACTGAGGTTGCTGGTG+TGG | - | chr3.3:58791328-58791347 | MS.gene04986:CDS | 55.0% | |
| GGAAGGGACACAGAGAAAGC+AGG | - | chr3.3:58792026-58792045 | MS.gene04986:intron | 55.0% | |
| GGCAACGAGCGTAGATTGAC+AGG | - | chr3.3:58791739-58791758 | MS.gene04986:intron | 55.0% | |
| GGCAGCTGCATGTCTCTTGT+TGG | + | chr3.3:58790371-58790390 | None:intergenic | 55.0% | |
| GGTCCAGGAAAACCACCAAC+TGG | + | chr3.3:58790589-58790608 | None:intergenic | 55.0% | |
| TGTGATGCGTACACTCCAGC+TGG | - | chr3.3:58790331-58790350 | MS.gene04986:intron | 55.0% | |
| ! | ACGTATGGGGGGGATTAGTG+CGG | - | chr3.3:58791891-58791910 | MS.gene04986:intron | 55.0% |
| ! | CCCTCAGTTGGTATCTCTGC+TGG | - | chr3.3:58791135-58791154 | MS.gene04986:CDS | 55.0% |
| ! | TGGTGGTTTTCCTGGACCTC+AGG | - | chr3.3:58790591-58790610 | MS.gene04986:intron | 55.0% |
| !! | CGTGGTGCGTCGATTAGAGT+TGG | - | chr3.3:58792005-58792024 | MS.gene04986:intron | 55.0% |
| !! | GCTGGTGCTGACAAGGCATT+TGG | - | chr3.3:58790882-58790901 | MS.gene04986:intron | 55.0% |
| !! | TTGTGGTGCTGGTGCTGACA+AGG | - | chr3.3:58790875-58790894 | MS.gene04986:intron | 55.0% |
| !!! | TGGCCAGTTGGTGGTTTTCC+TGG | - | chr3.3:58790583-58790602 | MS.gene04986:intron | 55.0% |
| CCACCAACTGGCCAACCAAG+AGG | + | chr3.3:58790577-58790596 | None:intergenic | 60.0% | |
| CGGTGGTTTCGGAGAGGTCA+AGG | + | chr3.3:58788730-58788749 | None:intergenic | 60.0% | |
| TCCAGCACAGGTCAAGCTCC+TGG | - | chr3.3:58789704-58789723 | MS.gene04986:CDS | 60.0% | |
| TCCAGGAGCTTGACCTGTGC+TGG | + | chr3.3:58789708-58789727 | None:intergenic | 60.0% | |
| ! | ATGGGGGGGATTAGTGCGGT+TGG | - | chr3.3:58791895-58791914 | MS.gene04986:intron | 60.0% |
| ! | CCTCTTGGTTGGCCAGTTGG+TGG | - | chr3.3:58790574-58790593 | MS.gene04986:intron | 60.0% |
| ! | GTGGGAATGGGTTCTCCAGC+TGG | + | chr3.3:58790349-58790368 | None:intergenic | 60.0% |
| ! | TGGCCTCTTGGTTGGCCAGT+TGG | - | chr3.3:58790571-58790590 | MS.gene04986:intron | 60.0% |
| ! | TGGGGGGGATTAGTGCGGTT+GGG | - | chr3.3:58791896-58791915 | MS.gene04986:intron | 60.0% |
| ! | GGGGGGGATTAGTGCGGTTG+GGG | - | chr3.3:58791897-58791916 | MS.gene04986:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 58788701 | 58792145 | 58788701 | ID=MS.gene04986 |
| chr3.3 | mRNA | 58788701 | 58792145 | 58788701 | ID=MS.gene04986.t1;Parent=MS.gene04986 |
| chr3.3 | exon | 58792072 | 58792145 | 58792072 | ID=MS.gene04986.t1.exon1;Parent=MS.gene04986.t1 |
| chr3.3 | CDS | 58792072 | 58792145 | 58792072 | ID=cds.MS.gene04986.t1;Parent=MS.gene04986.t1 |
| chr3.3 | exon | 58791312 | 58791351 | 58791312 | ID=MS.gene04986.t1.exon2;Parent=MS.gene04986.t1 |
| chr3.3 | CDS | 58791312 | 58791351 | 58791312 | ID=cds.MS.gene04986.t1;Parent=MS.gene04986.t1 |
| chr3.3 | exon | 58791096 | 58791199 | 58791096 | ID=MS.gene04986.t1.exon3;Parent=MS.gene04986.t1 |
| chr3.3 | CDS | 58791096 | 58791199 | 58791096 | ID=cds.MS.gene04986.t1;Parent=MS.gene04986.t1 |
| chr3.3 | exon | 58790928 | 58790976 | 58790928 | ID=MS.gene04986.t1.exon4;Parent=MS.gene04986.t1 |
| chr3.3 | CDS | 58790928 | 58790976 | 58790928 | ID=cds.MS.gene04986.t1;Parent=MS.gene04986.t1 |
| chr3.3 | exon | 58790415 | 58790521 | 58790415 | ID=MS.gene04986.t1.exon5;Parent=MS.gene04986.t1 |
| chr3.3 | CDS | 58790415 | 58790521 | 58790415 | ID=cds.MS.gene04986.t1;Parent=MS.gene04986.t1 |
| chr3.3 | exon | 58790234 | 58790321 | 58790234 | ID=MS.gene04986.t1.exon6;Parent=MS.gene04986.t1 |
| chr3.3 | CDS | 58790234 | 58790321 | 58790234 | ID=cds.MS.gene04986.t1;Parent=MS.gene04986.t1 |
| chr3.3 | exon | 58789854 | 58789982 | 58789854 | ID=MS.gene04986.t1.exon7;Parent=MS.gene04986.t1 |
| chr3.3 | CDS | 58789854 | 58789982 | 58789854 | ID=cds.MS.gene04986.t1;Parent=MS.gene04986.t1 |
| chr3.3 | exon | 58789655 | 58789729 | 58789655 | ID=MS.gene04986.t1.exon8;Parent=MS.gene04986.t1 |
| chr3.3 | CDS | 58789655 | 58789729 | 58789655 | ID=cds.MS.gene04986.t1;Parent=MS.gene04986.t1 |
| chr3.3 | exon | 58789467 | 58789520 | 58789467 | ID=MS.gene04986.t1.exon9;Parent=MS.gene04986.t1 |
| chr3.3 | CDS | 58789467 | 58789520 | 58789467 | ID=cds.MS.gene04986.t1;Parent=MS.gene04986.t1 |
| chr3.3 | exon | 58789297 | 58789334 | 58789297 | ID=MS.gene04986.t1.exon10;Parent=MS.gene04986.t1 |
| chr3.3 | CDS | 58789297 | 58789334 | 58789297 | ID=cds.MS.gene04986.t1;Parent=MS.gene04986.t1 |
| chr3.3 | exon | 58789048 | 58789207 | 58789048 | ID=MS.gene04986.t1.exon11;Parent=MS.gene04986.t1 |
| chr3.3 | CDS | 58789048 | 58789207 | 58789048 | ID=cds.MS.gene04986.t1;Parent=MS.gene04986.t1 |
| chr3.3 | exon | 58788701 | 58788853 | 58788701 | ID=MS.gene04986.t1.exon12;Parent=MS.gene04986.t1 |
| chr3.3 | CDS | 58788701 | 58788853 | 58788701 | ID=cds.MS.gene04986.t1;Parent=MS.gene04986.t1 |
| Gene Sequence |
| Protein sequence |
